AlfalfaGEDB | MS.gene58466

M. sativa cultivar XinJiangDaYe / MS.gene58466

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58466.t1	XP_013453016.1	69.5	174	50	1	1	174	1	171	1.90E-56	228.8

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58466.t1	A0A072UB75	69.5	174	50	1	1	174	1	171	1.4e-56	228.8

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene58466	0.810883	9.24E-51	-1.69E-46
MS.gene049171	MS.gene58466	0.93693	7.88E-98	-1.69E-46
MS.gene049173	MS.gene58466	0.830122	3.51E-55	-1.69E-46
MS.gene04921	MS.gene58466	-0.813423	2.58E-51	-1.69E-46
MS.gene049217	MS.gene58466	0.847335	1.23E-59	-1.69E-46
MS.gene049222	MS.gene58466	0.909736	4.09E-82	-1.69E-46
MS.gene049232	MS.gene58466	0.879358	1.33E-69	-1.69E-46
MS.gene049281	MS.gene58466	-0.832675	8.26E-56	-1.69E-46
MS.gene049285	MS.gene58466	0.922807	6.08E-89	-1.69E-46
MS.gene049320	MS.gene58466	0.915098	8.80E-85	-1.69E-46

Showing 1 to 10 of 251 entries

Previous1 2 3 4 5…26Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58466.t1	MTR_6g084620	92.529	174	10	2	1	174	1	171	1.08e-104	297

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58466.t1	AT1G73885	58.824	85	33	2	91	173	95	179	1.96e-26	99.8

Showing 1 to 1 of 1 entries

Previous1Next

Find 0 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATAGTCTCACAAGTACTTA+TGG	-	42699:29948-29967	MS.gene58466:intron	30.0%
AATGTCTTGTCTAGAGAATT+TGG	-	42699:31360-31379	MS.gene58466:CDS	30.0%
ACTACCAAGGTTTCTATATT+AGG	+	42699:30159-30178	None:intergenic	30.0%
AGTTTCTGCTAATGAATTGT+AGG	-	42699:30705-30724	MS.gene58466:intron	30.0%
ATGTCTTGTCTAGAGAATTT+GGG	-	42699:31361-31380	MS.gene58466:CDS	30.0%
CAAACATGCCTAATCTATTT+AGG	+	42699:31270-31289	None:intergenic	30.0%
CAATCTTCATCAGAGTAAAA+CGG	+	42699:29312-29331	None:intergenic	30.0%
GATCGAAATATTAGATCATG+TGG	+	42699:30614-30633	None:intergenic	30.0%
GCAGAGCAATAAAATTTGAA+TGG	+	42699:31165-31184	None:intergenic	30.0%
GTATTGTGCGTGAATATTAA+TGG	+	42699:30076-30095	None:intergenic	30.0%

Showing 1 to 10 of 160 entries

Previous1 2 3 4 5…16Next

Chromosome	Type	Strat	End	Strand	Name
42699	gene	29096	31621	29096	ID=MS.gene58466
42699	mRNA	29096	31621	29096	ID=MS.gene58466.t1;Parent=MS.gene58466
42699	exon	31268	31621	31268	ID=MS.gene58466.t1.exon1;Parent=MS.gene58466.t1
42699	CDS	31268	31621	31268	ID=cds.MS.gene58466.t1;Parent=MS.gene58466.t1
42699	exon	29096	29266	29096	ID=MS.gene58466.t1.exon2;Parent=MS.gene58466.t1
42699	CDS	29096	29266	29096	ID=cds.MS.gene58466.t1;Parent=MS.gene58466.t1

Gene Sequence

>MS.gene58466

ATGGCATTCACCGTAGCTACATGCGGTGGTGCAGGAATCCTCTACAACAAGACCACCACAACAACACCCTACACCCTCCTACCACCATCTTCTTCTAGAAGAAGAACACTTCACATAGTTTCAGCTAAGAAGATTTCTTCACGTTCAAGAAGGAACCAACAACCAACAACCACTGTTGATGAGGAAATAGAACCAAGGAATGAAGTTGAAATACCGTTTTACTCTGATGAAGATTGGCCTTTTGAATGGAGACCTCCTGGTACTTACAAAGAGCCTGATTTCTTTGAAGGTCCTCAGTGGAATACTGTTGGGTTTGTTGGAGAATGGTTGTGGATTCTTGGTGGTCTTTTTGCGGTATAATTCAACTTCTATCTTGTTTTTCTTTTGTTTTGTTTGTTGCTGAATTGTTGGTGTGTTATTTGTATGTGTGTGTGTTTTGATTGAGTGATTGTTCTTGAGTATTAGAAGAATTTTGGAAGAAGATATGACCCTGTTTGGATAAACAACTTATTGTGCAGCTTATAGGATAAGTGTATATTATATAAGTTGTTATGAATAAGCTATTTCTATAACACAAGATTACAAGATAAAATAAAGTTAAAATGTTTCGATACAAGGTATAAGTTGTTTTAACCCATTTAGGTTGGCCTGGTGGTATTGACTTGGGACCTGGGAGTGTGCTCCTCCTCAAGGTCTCATGTTCGATTCTCTCCGGTGTCAATTTGAGTGGGCTTCGATTCTCTCCGGTGTCAATTTGAGTGGGCTAATTTAGCTTCTTTTTACAAGTTGTTTTTGTAAGTATCTTGAAGGGTTTGTGATATACGGTATAACCTTTTTTTGCAAGTCCGCTCAAATAGTCTCACAAGTACTTATGGACTCATCATCTTATGAGTTGGTTTTGTAAGGATTAATTAAATATAATATAAAAAACCTGATATGATATCAGTCATCAGAGCCTATCCATTAAGGGCCAACAACCATTAATATTCACGCACAATACCCAATAGTGTTGAGCGTGAGAGGGTGTATGCGTGAAGGGGCTTACTGGGGATGAGTTAAGCCTAATATAGAAACCTTGGTAGTATGTGTGTGTATTTTGATTGACTGATTTTTTTAGTATAAGAAGAAATTTGGTGTGTGTGTATTTTGATTGACTGATTTTTTTAGTATTAGAAGAAATTTGGAAGAGTGCAGAGTTAACTTTTGAGTTTATTTGGCGACATAATCACTTATCTAGGAACATGTTTGGATTGACGAGGAGTTTGAACTTTGACGAAAGCACGGTGACATCGTAATTTTGTTGAAACTCTGAAGTGTTGTTTCTTGCCAAAATCGCGCTGGGTCATTTGACCATGTCAGACTCACCGCCAATTCAAAATATGAACTAAGTAGTTAGAAAAATTATAGTGAAAATAAAGTAGTGAGAAAAATCATAAGTAACTAGAACAATTGGGTTGGATTGTGATATTAAGATTTTTTTATGTCTATATGACTACATCATGATCCTAATTGTTGCCACATGATCTAATATTTCGATCCATCTTGATTGTGTTTTCGCGGTATGATTTAACTACCTTTTCTTTTGCTATTTTGCGACATCAAGCTTTCGAGTTTCTGCTAATGAATTGTAGGTGTGTCATGTTTATATTTGTGTTTTCTGTGAGTGTTTTTTTTTTGGTATAAGAAGAAATTTGGAGGAGGATAGAGTTTAATTGAGTATATGCAGTGACAATTTCACTTATATAAGTATTTAGAAAAGTAAATATTTGCCTAAAACAAGTTCATAAAAATAACATACCCATTTATCTATGTGCTGCAGTATTAAGGTTTTTCATGCCATAACTATGTTATTTAAATGTTAAGGTTTTCGATGTCTCACAACGTTATTGTGACCGCATGATACTATATTTGACCACAATTGTTGCAATATTATGAATCCTGATGAAATGCTGCTTTAAACGTTCACTACAATACGCTCACAAATTTATTTCAGCTTATTTAACCAAGTTTTCAAAGATAAAATTACTTAGGTGGATTTTATCTAATCTTCTTTCTTCTATTTTCATCCATTCAAATTTTATTGCTCTGCTAAAATGTGAACAGTTTGTTGAATTTAAGCACAAGGTTTGTTTAATATATTAGTACTTTATTAAGTTGTATGCCAAAAACTTCCTAAATAGATTAGGCATGTTTGTGAGAATACTCTGTTGTTTCTGCATTTCTACTTCTTGTGTTCATATTCGTTCATTTCTTTGATGCCAAGGAATGTCTTGTCTAGAGAATTTGGGTTGCTAATCTAGTCATATATCGACATGTAGGTTCAGTTATAAATTTATAAGTTCATCGTGATTGCAGGTACTCGGTGGTGGGTATGCAGCCATAAACTACAATCTAGGCGCATCAGATTTTAAGGAAACTCCTGCATACAAGGAATCTCAATCTCAAGAACTTTTAGAACAACCCGAAACATCTGAATCGGACATATTCGAGTCCAATCCTACAGAGGTAGCTCCTAGTTTGAACTAG

Protein sequence

>MS.gene58466.t1

MAFTVATCGGAGILYNKTTTTTPYTLLPPSSSRRRTLHIVSAKKISSRSRRNQQPTTTVDEEIEPRNEVEIPFYSDEDWPFEWRPPGTYKEPDFFEGPQWNTVGFVGEWLWILGGLFAVLGGGYAAINYNLGASDFKETPAYKESQSQELLEQPETSESDIFESNPTEVAPSLN