Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59540.t1 | XP_024627594.1 | 91.9 | 236 | 18 | 1 | 1 | 236 | 1 | 235 | 4.40E-112 | 414.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59540.t1 | O81223 | 60.2 | 221 | 82 | 1 | 17 | 237 | 3 | 217 | 1.8e-69 | 263.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59540.t1 | G8A2Y4 | 91.9 | 236 | 18 | 1 | 1 | 236 | 1 | 235 | 3.2e-112 | 414.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene59540 | 0.838713 | 2.44E-57 | -1.69E-46 |
| MS.gene04919 | MS.gene59540 | 0.822585 | 2.19E-53 | -1.69E-46 |
| MS.gene04920 | MS.gene59540 | 0.846558 | 2.01E-59 | -1.69E-46 |
| MS.gene049254 | MS.gene59540 | 0.862561 | 4.64E-64 | -1.69E-46 |
| MS.gene049283 | MS.gene59540 | 0.848658 | 5.33E-60 | -1.69E-46 |
| MS.gene049293 | MS.gene59540 | -0.818584 | 1.82E-52 | -1.69E-46 |
| MS.gene049350 | MS.gene59540 | 0.80691 | 6.54E-50 | -1.69E-46 |
| MS.gene049419 | MS.gene59540 | -0.820052 | 8.41E-53 | -1.69E-46 |
| MS.gene049499 | MS.gene59540 | 0.862476 | 4.93E-64 | -1.69E-46 |
| MS.gene049652 | MS.gene59540 | 0.804457 | 2.14E-49 | -1.69E-46 |
| MS.gene049825 | MS.gene59540 | 0.833478 | 5.21E-56 | -1.69E-46 |
| MS.gene049983 | MS.gene59540 | 0.811031 | 8.58E-51 | -1.69E-46 |
| MS.gene050026 | MS.gene59540 | 0.817972 | 2.50E-52 | -1.69E-46 |
| MS.gene050031 | MS.gene59540 | 0.81349 | 2.49E-51 | -1.69E-46 |
| MS.gene050300 | MS.gene59540 | -0.837963 | 3.81E-57 | -1.69E-46 |
| MS.gene050414 | MS.gene59540 | 0.807105 | 5.95E-50 | -1.69E-46 |
| MS.gene050559 | MS.gene59540 | 0.816024 | 6.84E-52 | -1.69E-46 |
| MS.gene050561 | MS.gene59540 | 0.80857 | 2.90E-50 | -1.69E-46 |
| MS.gene050562 | MS.gene59540 | 0.806668 | 7.36E-50 | -1.69E-46 |
| MS.gene050945 | MS.gene59540 | 0.812309 | 4.52E-51 | -1.69E-46 |
| MS.gene051279 | MS.gene59540 | 0.804674 | 1.93E-49 | -1.69E-46 |
| MS.gene051332 | MS.gene59540 | 0.83253 | 8.97E-56 | -1.69E-46 |
| MS.gene051574 | MS.gene59540 | 0.810747 | 9.88E-51 | -1.69E-46 |
| MS.gene051597 | MS.gene59540 | 0.805362 | 1.38E-49 | -1.69E-46 |
| MS.gene051676 | MS.gene59540 | 0.802182 | 6.33E-49 | -1.69E-46 |
| MS.gene051699 | MS.gene59540 | 0.860178 | 2.48E-63 | -1.69E-46 |
| MS.gene051700 | MS.gene59540 | 0.816857 | 4.46E-52 | -1.69E-46 |
| MS.gene051744 | MS.gene59540 | 0.807072 | 6.04E-50 | -1.69E-46 |
| MS.gene051832 | MS.gene59540 | 0.845061 | 5.14E-59 | -1.69E-46 |
| MS.gene051902 | MS.gene59540 | 0.807383 | 5.19E-50 | -1.69E-46 |
| MS.gene051975 | MS.gene59540 | 0.810578 | 1.08E-50 | -1.69E-46 |
| MS.gene052108 | MS.gene59540 | 0.841312 | 5.13E-58 | -1.69E-46 |
| MS.gene052239 | MS.gene59540 | -0.816518 | 5.31E-52 | -1.69E-46 |
| MS.gene052463 | MS.gene59540 | 0.816323 | 5.87E-52 | -1.69E-46 |
| MS.gene052518 | MS.gene59540 | 0.803217 | 3.87E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene59540 | 0.828151 | 1.05E-54 | -1.69E-46 |
| MS.gene052533 | MS.gene59540 | 0.811346 | 7.33E-51 | -1.69E-46 |
| MS.gene052534 | MS.gene59540 | 0.851594 | 8.02E-61 | -1.69E-46 |
| MS.gene052582 | MS.gene59540 | 0.849927 | 2.36E-60 | -1.69E-46 |
| MS.gene052584 | MS.gene59540 | 0.85215 | 5.57E-61 | -1.69E-46 |
| MS.gene052586 | MS.gene59540 | 0.840194 | 1.01E-57 | -1.69E-46 |
| MS.gene052673 | MS.gene59540 | -0.805048 | 1.61E-49 | -1.69E-46 |
| MS.gene052685 | MS.gene59540 | 0.850938 | 1.23E-60 | -1.69E-46 |
| MS.gene052686 | MS.gene59540 | 0.810521 | 1.11E-50 | -1.69E-46 |
| MS.gene052717 | MS.gene59540 | 0.810362 | 1.20E-50 | -1.69E-46 |
| MS.gene052793 | MS.gene59540 | 0.803891 | 2.81E-49 | -1.69E-46 |
| MS.gene052954 | MS.gene59540 | 0.810527 | 1.10E-50 | -1.69E-46 |
| MS.gene053006 | MS.gene59540 | 0.812499 | 4.11E-51 | -1.69E-46 |
| MS.gene053045 | MS.gene59540 | 0.822063 | 2.89E-53 | -1.69E-46 |
| MS.gene053082 | MS.gene59540 | 0.812953 | 3.27E-51 | -1.69E-46 |
| MS.gene05308 | MS.gene59540 | 0.807762 | 4.31E-50 | -1.69E-46 |
| MS.gene053189 | MS.gene59540 | 0.805017 | 1.63E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene59540 | 0.833843 | 4.23E-56 | -1.69E-46 |
| MS.gene053294 | MS.gene59540 | 0.82557 | 4.36E-54 | -1.69E-46 |
| MS.gene053298 | MS.gene59540 | 0.849466 | 3.18E-60 | -1.69E-46 |
| MS.gene053321 | MS.gene59540 | 0.8132 | 2.89E-51 | -1.69E-46 |
| MS.gene053340 | MS.gene59540 | 0.82929 | 5.59E-55 | -1.69E-46 |
| MS.gene053396 | MS.gene59540 | 0.810077 | 1.38E-50 | -1.69E-46 |
| MS.gene05365 | MS.gene59540 | 0.833634 | 4.76E-56 | -1.69E-46 |
| MS.gene053963 | MS.gene59540 | 0.881479 | 2.32E-70 | -1.69E-46 |
| MS.gene05415 | MS.gene59540 | 0.811552 | 6.61E-51 | -1.69E-46 |
| MS.gene054222 | MS.gene59540 | 0.878362 | 2.99E-69 | -1.69E-46 |
| MS.gene05423 | MS.gene59540 | 0.82308 | 1.68E-53 | -1.69E-46 |
| MS.gene054291 | MS.gene59540 | -0.804329 | 2.28E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene59540 | 0.830314 | 3.15E-55 | -1.69E-46 |
| MS.gene054576 | MS.gene59540 | 0.836214 | 1.07E-56 | -1.69E-46 |
| MS.gene054651 | MS.gene59540 | 0.824279 | 8.80E-54 | -1.69E-46 |
| MS.gene054684 | MS.gene59540 | 0.801299 | 9.61E-49 | -1.69E-46 |
| MS.gene054892 | MS.gene59540 | 0.820458 | 6.79E-53 | -1.69E-46 |
| MS.gene054893 | MS.gene59540 | 0.822476 | 2.32E-53 | -1.69E-46 |
| MS.gene054957 | MS.gene59540 | 0.802726 | 4.89E-49 | -1.69E-46 |
| MS.gene054991 | MS.gene59540 | 0.827648 | 1.39E-54 | -1.69E-46 |
| MS.gene055228 | MS.gene59540 | 0.8029 | 4.50E-49 | -1.69E-46 |
| MS.gene055229 | MS.gene59540 | 0.816548 | 5.22E-52 | -1.69E-46 |
| MS.gene05539 | MS.gene59540 | 0.816871 | 4.42E-52 | -1.69E-46 |
| MS.gene05548 | MS.gene59540 | 0.819808 | 9.56E-53 | -1.69E-46 |
| MS.gene055555 | MS.gene59540 | 0.83872 | 2.43E-57 | -1.69E-46 |
| MS.gene055586 | MS.gene59540 | 0.83596 | 1.24E-56 | -1.69E-46 |
| MS.gene055589 | MS.gene59540 | 0.816 | 6.93E-52 | -1.69E-46 |
| MS.gene055724 | MS.gene59540 | 0.82107 | 4.91E-53 | -1.69E-46 |
| MS.gene055778 | MS.gene59540 | 0.801001 | 1.11E-48 | -1.69E-46 |
| MS.gene055801 | MS.gene59540 | 0.809349 | 1.98E-50 | -1.69E-46 |
| MS.gene055808 | MS.gene59540 | 0.802277 | 6.06E-49 | -1.69E-46 |
| MS.gene055841 | MS.gene59540 | 0.842138 | 3.10E-58 | -1.69E-46 |
| MS.gene056068 | MS.gene59540 | 0.839418 | 1.60E-57 | -1.69E-46 |
| MS.gene056082 | MS.gene59540 | 0.805552 | 1.26E-49 | -1.69E-46 |
| MS.gene056091 | MS.gene59540 | 0.827773 | 1.30E-54 | -1.69E-46 |
| MS.gene056174 | MS.gene59540 | 0.807739 | 4.36E-50 | -1.69E-46 |
| MS.gene056215 | MS.gene59540 | 0.804518 | 2.08E-49 | -1.69E-46 |
| MS.gene056272 | MS.gene59540 | 0.845196 | 4.72E-59 | -1.69E-46 |
| MS.gene056366 | MS.gene59540 | 0.807504 | 4.89E-50 | -1.69E-46 |
| MS.gene05636 | MS.gene59540 | 0.821492 | 3.92E-53 | -1.69E-46 |
| MS.gene056403 | MS.gene59540 | 0.815022 | 1.14E-51 | -1.69E-46 |
| MS.gene05659 | MS.gene59540 | 0.812571 | 3.96E-51 | -1.69E-46 |
| MS.gene056605 | MS.gene59540 | 0.805028 | 1.63E-49 | -1.69E-46 |
| MS.gene056677 | MS.gene59540 | 0.813075 | 3.08E-51 | -1.69E-46 |
| MS.gene056776 | MS.gene59540 | 0.849109 | 3.99E-60 | -1.69E-46 |
| MS.gene056779 | MS.gene59540 | 0.824345 | 8.49E-54 | -1.69E-46 |
| MS.gene05686 | MS.gene59540 | 0.815385 | 9.50E-52 | -1.69E-46 |
| MS.gene05689 | MS.gene59540 | 0.844772 | 6.15E-59 | -1.69E-46 |
| MS.gene05690 | MS.gene59540 | 0.813183 | 2.91E-51 | -1.69E-46 |
| MS.gene056973 | MS.gene59540 | 0.803275 | 3.77E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene59540 | 0.816995 | 4.15E-52 | -1.69E-46 |
| MS.gene057102 | MS.gene59540 | 0.867922 | 9.58E-66 | -1.69E-46 |
| MS.gene057155 | MS.gene59540 | 0.804571 | 2.03E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene59540 | 0.848047 | 7.86E-60 | -1.69E-46 |
| MS.gene057598 | MS.gene59540 | 0.813623 | 2.33E-51 | -1.69E-46 |
| MS.gene057611 | MS.gene59540 | 0.80211 | 6.55E-49 | -1.69E-46 |
| MS.gene057890 | MS.gene59540 | -0.807088 | 6.00E-50 | -1.69E-46 |
| MS.gene057893 | MS.gene59540 | -0.839194 | 1.83E-57 | -1.69E-46 |
| MS.gene058008 | MS.gene59540 | 0.829902 | 3.97E-55 | -1.69E-46 |
| MS.gene058009 | MS.gene59540 | 0.801217 | 9.99E-49 | -1.69E-46 |
| MS.gene058037 | MS.gene59540 | 0.817665 | 2.93E-52 | -1.69E-46 |
| MS.gene058159 | MS.gene59540 | 0.857934 | 1.16E-62 | -1.69E-46 |
| MS.gene058279 | MS.gene59540 | 0.850431 | 1.71E-60 | -1.69E-46 |
| MS.gene058498 | MS.gene59540 | 0.836538 | 8.82E-57 | -1.69E-46 |
| MS.gene058500 | MS.gene59540 | 0.832699 | 8.14E-56 | -1.69E-46 |
| MS.gene058592 | MS.gene59540 | 0.801195 | 1.01E-48 | -1.69E-46 |
| MS.gene058625 | MS.gene59540 | 0.814685 | 1.36E-51 | -1.69E-46 |
| MS.gene058635 | MS.gene59540 | 0.804611 | 1.99E-49 | -1.69E-46 |
| MS.gene059170 | MS.gene59540 | 0.800462 | 1.42E-48 | -1.69E-46 |
| MS.gene059439 | MS.gene59540 | 0.815558 | 8.69E-52 | -1.69E-46 |
| MS.gene05950 | MS.gene59540 | 0.812895 | 3.37E-51 | -1.69E-46 |
| MS.gene05952 | MS.gene59540 | 0.84114 | 5.69E-58 | -1.69E-46 |
| MS.gene05954 | MS.gene59540 | 0.831706 | 1.43E-55 | -1.69E-46 |
| MS.gene059625 | MS.gene59540 | 0.819445 | 1.16E-52 | -1.69E-46 |
| MS.gene05985 | MS.gene59540 | -0.873825 | 1.09E-67 | -1.69E-46 |
| MS.gene059901 | MS.gene59540 | -0.802849 | 4.62E-49 | -1.69E-46 |
| MS.gene059935 | MS.gene59540 | 0.846478 | 2.12E-59 | -1.69E-46 |
| MS.gene060012 | MS.gene59540 | 0.841897 | 3.59E-58 | -1.69E-46 |
| MS.gene060365 | MS.gene59540 | 0.87098 | 9.68E-67 | -1.69E-46 |
| MS.gene060373 | MS.gene59540 | 0.809342 | 1.98E-50 | -1.69E-46 |
| MS.gene060412 | MS.gene59540 | 0.81809 | 2.35E-52 | -1.69E-46 |
| MS.gene060429 | MS.gene59540 | 0.801611 | 8.30E-49 | -1.69E-46 |
| MS.gene060521 | MS.gene59540 | 0.839062 | 1.98E-57 | -1.69E-46 |
| MS.gene060572 | MS.gene59540 | 0.816619 | 5.04E-52 | -1.69E-46 |
| MS.gene060634 | MS.gene59540 | -0.842326 | 2.77E-58 | -1.69E-46 |
| MS.gene060777 | MS.gene59540 | 0.807855 | 4.12E-50 | -1.69E-46 |
| MS.gene060840 | MS.gene59540 | 0.809441 | 1.89E-50 | -1.69E-46 |
| MS.gene060879 | MS.gene59540 | 0.860149 | 2.53E-63 | -1.69E-46 |
| MS.gene060932 | MS.gene59540 | 0.81523 | 1.03E-51 | -1.69E-46 |
| MS.gene060933 | MS.gene59540 | 0.817812 | 2.72E-52 | -1.69E-46 |
| MS.gene060935 | MS.gene59540 | 0.835852 | 1.32E-56 | -1.69E-46 |
| MS.gene060937 | MS.gene59540 | 0.847487 | 1.12E-59 | -1.69E-46 |
| MS.gene061100 | MS.gene59540 | 0.821897 | 3.16E-53 | -1.69E-46 |
| MS.gene061160 | MS.gene59540 | 0.810012 | 1.42E-50 | -1.69E-46 |
| MS.gene061188 | MS.gene59540 | 0.823751 | 1.17E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59540.t1 | MTR_8g027620 | 97.034 | 236 | 6 | 1 | 1 | 236 | 1 | 235 | 7.22e-168 | 465 |
| MS.gene59540.t1 | MTR_3g091440 | 68.878 | 196 | 61 | 0 | 40 | 235 | 17 | 212 | 2.71e-95 | 278 |
| MS.gene59540.t1 | MTR_3g091440 | 66.316 | 190 | 64 | 0 | 46 | 235 | 24 | 213 | 2.64e-88 | 261 |
| MS.gene59540.t1 | MTR_8g099575 | 61.538 | 195 | 75 | 0 | 40 | 234 | 16 | 210 | 1.82e-85 | 253 |
| MS.gene59540.t1 | MTR_4g099210 | 56.923 | 195 | 84 | 0 | 40 | 234 | 16 | 210 | 9.29e-79 | 236 |
| MS.gene59540.t1 | MTR_3g060730 | 54.146 | 205 | 92 | 1 | 33 | 235 | 22 | 226 | 1.27e-76 | 231 |
| MS.gene59540.t1 | MTR_4g134250 | 55.440 | 193 | 86 | 0 | 43 | 235 | 35 | 227 | 1.73e-76 | 231 |
| MS.gene59540.t1 | MTR_1g016430 | 57.436 | 195 | 83 | 0 | 38 | 232 | 53 | 247 | 2.20e-76 | 231 |
| MS.gene59540.t1 | MTR_5g096420 | 55.612 | 196 | 87 | 0 | 40 | 235 | 31 | 226 | 4.57e-76 | 229 |
| MS.gene59540.t1 | MTR_3g060730 | 55.435 | 184 | 82 | 0 | 52 | 235 | 5 | 188 | 7.16e-73 | 220 |
| MS.gene59540.t1 | MTR_1g016430 | 58.011 | 181 | 76 | 0 | 52 | 232 | 1 | 181 | 8.43e-73 | 219 |
| MS.gene59540.t1 | MTR_2g027500 | 46.809 | 235 | 114 | 2 | 1 | 235 | 1 | 224 | 2.19e-72 | 220 |
| MS.gene59540.t1 | MTR_8g099570 | 51.531 | 196 | 95 | 0 | 40 | 235 | 58 | 253 | 6.58e-72 | 220 |
| MS.gene59540.t1 | MTR_1g016430 | 58.011 | 181 | 76 | 0 | 52 | 232 | 99 | 279 | 1.98e-71 | 219 |
| MS.gene59540.t1 | MTR_2g027440 | 53.226 | 186 | 87 | 0 | 49 | 234 | 43 | 228 | 7.39e-67 | 206 |
| MS.gene59540.t1 | MTR_3g091440 | 70.922 | 141 | 41 | 0 | 40 | 180 | 17 | 157 | 1.11e-65 | 201 |
| MS.gene59540.t1 | MTR_2g027480 | 52.688 | 186 | 88 | 0 | 49 | 234 | 43 | 228 | 2.74e-65 | 202 |
| MS.gene59540.t1 | MTR_8g016170 | 52.083 | 192 | 92 | 0 | 45 | 236 | 66 | 257 | 9.32e-64 | 199 |
| MS.gene59540.t1 | MTR_2g027520 | 49.738 | 191 | 96 | 0 | 45 | 235 | 41 | 231 | 3.85e-63 | 197 |
| MS.gene59540.t1 | MTR_5g013560 | 49.231 | 195 | 88 | 1 | 40 | 234 | 15 | 198 | 6.45e-61 | 190 |
| MS.gene59540.t1 | MTR_8g016170 | 54.070 | 172 | 79 | 0 | 45 | 216 | 47 | 218 | 1.46e-58 | 185 |
| MS.gene59540.t1 | MTR_4g113505 | 44.920 | 187 | 103 | 0 | 51 | 237 | 6 | 192 | 1.16e-55 | 178 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59540.t1 | AT5G24270 | 60.181 | 221 | 82 | 1 | 17 | 237 | 3 | 217 | 1.62e-93 | 274 |
| MS.gene59540.t1 | AT5G24270 | 60.181 | 221 | 82 | 1 | 17 | 237 | 3 | 217 | 1.62e-93 | 274 |
| MS.gene59540.t1 | AT5G24270 | 60.181 | 221 | 82 | 1 | 17 | 237 | 3 | 217 | 1.62e-93 | 274 |
| MS.gene59540.t1 | AT5G24270 | 63.492 | 189 | 69 | 0 | 49 | 237 | 4 | 192 | 1.28e-86 | 255 |
| MS.gene59540.t1 | AT1G64480 | 60.000 | 195 | 78 | 0 | 40 | 234 | 20 | 214 | 5.95e-79 | 236 |
| MS.gene59540.t1 | AT1G64480 | 60.000 | 195 | 78 | 0 | 40 | 234 | 20 | 214 | 5.95e-79 | 236 |
| MS.gene59540.t1 | AT1G64480 | 60.000 | 195 | 78 | 0 | 40 | 234 | 20 | 214 | 5.95e-79 | 236 |
| MS.gene59540.t1 | AT5G24270 | 62.805 | 164 | 61 | 0 | 74 | 237 | 7 | 170 | 1.23e-75 | 226 |
| MS.gene59540.t1 | AT5G47100 | 56.842 | 190 | 82 | 0 | 45 | 234 | 21 | 210 | 1.43e-75 | 228 |
| MS.gene59540.t1 | AT4G33000 | 58.247 | 194 | 81 | 0 | 41 | 234 | 53 | 246 | 1.44e-75 | 229 |
| MS.gene59540.t1 | AT4G17615 | 55.385 | 195 | 87 | 0 | 40 | 234 | 16 | 210 | 3.03e-75 | 227 |
| MS.gene59540.t1 | AT4G17615 | 55.385 | 195 | 87 | 0 | 40 | 234 | 16 | 210 | 3.03e-75 | 227 |
| MS.gene59540.t1 | AT4G17615 | 55.385 | 195 | 87 | 0 | 40 | 234 | 16 | 210 | 3.03e-75 | 227 |
| MS.gene59540.t1 | AT4G33000 | 58.247 | 194 | 81 | 0 | 41 | 234 | 63 | 256 | 3.49e-75 | 228 |
| MS.gene59540.t1 | AT4G26570 | 54.359 | 195 | 89 | 0 | 41 | 235 | 32 | 226 | 8.33e-75 | 226 |
| MS.gene59540.t1 | AT5G55990 | 54.359 | 195 | 89 | 0 | 41 | 235 | 32 | 226 | 2.37e-73 | 223 |
| MS.gene59540.t1 | AT5G55990 | 54.359 | 195 | 89 | 0 | 41 | 235 | 32 | 226 | 2.37e-73 | 223 |
| MS.gene59540.t1 | AT4G26570 | 53.266 | 199 | 89 | 1 | 41 | 235 | 32 | 230 | 1.46e-72 | 221 |
| MS.gene59540.t1 | AT1G64480 | 60.452 | 177 | 70 | 0 | 40 | 216 | 20 | 196 | 1.68e-70 | 214 |
| MS.gene59540.t1 | AT4G17615 | 55.801 | 181 | 80 | 0 | 40 | 220 | 16 | 196 | 9.18e-68 | 209 |
| MS.gene59540.t1 | AT4G01420 | 47.739 | 199 | 104 | 0 | 29 | 227 | 4 | 202 | 2.63e-62 | 194 |
| MS.gene59540.t1 | AT4G16350 | 51.613 | 186 | 86 | 1 | 45 | 230 | 34 | 215 | 2.06e-61 | 192 |
| MS.gene59540.t1 | AT4G16350 | 51.613 | 186 | 86 | 1 | 45 | 230 | 34 | 215 | 2.06e-61 | 192 |
| MS.gene59540.t1 | AT4G17615 | 54.777 | 157 | 71 | 0 | 78 | 234 | 12 | 168 | 3.27e-61 | 190 |
| MS.gene59540.t1 | AT4G01420 | 47.872 | 188 | 98 | 0 | 29 | 216 | 4 | 191 | 1.37e-58 | 184 |
| MS.gene59540.t1 | AT4G26560 | 46.316 | 190 | 89 | 1 | 59 | 235 | 25 | 214 | 1.86e-56 | 179 |
| MS.gene59540.t1 | AT5G47100 | 53.623 | 138 | 64 | 0 | 45 | 182 | 21 | 158 | 1.09e-49 | 160 |
| MS.gene59540.t1 | AT4G33000 | 55.556 | 144 | 64 | 0 | 41 | 184 | 53 | 196 | 3.20e-48 | 158 |
| MS.gene59540.t1 | AT4G33000 | 56.429 | 140 | 61 | 0 | 41 | 180 | 53 | 192 | 5.88e-48 | 157 |
| MS.gene59540.t1 | AT4G33000 | 56.429 | 140 | 61 | 0 | 41 | 180 | 53 | 192 | 5.88e-48 | 157 |
| MS.gene59540.t1 | AT4G33000 | 55.435 | 92 | 41 | 0 | 41 | 132 | 53 | 144 | 1.53e-25 | 98.2 |
Find 32 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTCTGCTTGAGGAGCTTT+AGG | 0.234896 | 8.4:-68734807 | None:intergenic |
| GGATATGGTGTTGATGATTT+TGG | 0.239699 | 8.4:+68735160 | MS.gene59540:CDS |
| TTCTGCGTTCAGCATAAAAC+TGG | 0.307181 | 8.4:-68735624 | None:intergenic |
| AAAAGTAGCAGAAAATATTA+TGG | 0.327214 | 8.4:+68733605 | MS.gene59540:CDS |
| TAAATTCGCCAAACTCTATA+TGG | 0.330475 | 8.4:-68734761 | None:intergenic |
| GGCGAATTTATCAGATCTTT+AGG | 0.334304 | 8.4:+68734774 | MS.gene59540:CDS |
| CTTAAAACTTACATTAGATA+TGG | 0.346803 | 8.4:-68735429 | None:intergenic |
| AAATTTACAGTTGAAGGATA+TGG | 0.379306 | 8.4:+68735145 | MS.gene59540:intron |
| CACAACGGCCATATAGAGTT+TGG | 0.395021 | 8.4:+68734753 | MS.gene59540:CDS |
| TTATATGACTTGAGGCATAC+TGG | 0.414238 | 8.4:+68735024 | MS.gene59540:CDS |
| AAACTACAAGTGTGATTCTT+CGG | 0.432593 | 8.4:-68735648 | None:intergenic |
| GTCATGTTCTTGAGTAATGA+TGG | 0.435791 | 8.4:-68735402 | None:intergenic |
| AAACAAACGCAACCTCTTTG+TGG | 0.437485 | 8.4:+68734584 | MS.gene59540:CDS |
| CTTATCTTTGCCAACTTCAC+AGG | 0.446985 | 8.4:-68733634 | None:intergenic |
| GAAGAATGGAGTGAATATGT+TGG | 0.482908 | 8.4:+68735372 | MS.gene59540:CDS |
| GAGAGAGGTGGAAATCTTGA+AGG | 0.495718 | 8.4:+68734337 | MS.gene59540:CDS |
| TTTGGTTCTCTCTGATGATG+TGG | 0.519964 | 8.4:+68735193 | MS.gene59540:CDS |
| ACGCAACCTCTTTGTGGATA+GGG | 0.528181 | 8.4:+68734590 | MS.gene59540:CDS |
| TACATGGTGTTTCAGAAGCA+AGG | 0.531935 | 8.4:-68733719 | None:intergenic |
| GTAGCAGAAAATATTATGGA+TGG | 0.537395 | 8.4:+68733609 | MS.gene59540:CDS |
| CATTTAGATTATATGACTTG+AGG | 0.558619 | 8.4:+68735016 | MS.gene59540:CDS |
| ATGGATGGATCCTGTGAAGT+TGG | 0.558937 | 8.4:+68733624 | MS.gene59540:CDS |
| AACGCAACCTCTTTGTGGAT+AGG | 0.564160 | 8.4:+68734589 | MS.gene59540:CDS |
| CCTAGCAGTTACTGTGAGAG+AGG | 0.600150 | 8.4:+68734322 | MS.gene59540:intron |
| GGTTGAAACAATTGTGGACA+AGG | 0.615162 | 8.4:+68735214 | MS.gene59540:CDS |
| GAAACAGACACGAAAGGTGA+CGG | 0.615254 | 8.4:+68735336 | MS.gene59540:CDS |
| TGCATACCCTATCCACAAAG+AGG | 0.624228 | 8.4:-68734596 | None:intergenic |
| TGATGTGGTTGAAACAATTG+TGG | 0.635953 | 8.4:+68735208 | MS.gene59540:CDS |
| TCTGCGTTCAGCATAAAACT+GGG | 0.644374 | 8.4:-68735623 | None:intergenic |
| AGCAGTTACTGTGAGAGAGG+TGG | 0.654761 | 8.4:+68734325 | MS.gene59540:intron |
| TTTCTAGAAACAGACACGAA+AGG | 0.669410 | 8.4:+68735330 | MS.gene59540:CDS |
| TGGTTACATTGAGCGCGAAG+AGG | 0.670430 | 8.4:+68735044 | MS.gene59540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATACAATCATATAAAT+TGG | + | chr8.4:68734904-68734923 | MS.gene59540:intron | 10.0% |
| !!! | AAAGTTTCTTATATATATTT+TGG | + | chr8.4:68735291-68735310 | MS.gene59540:intron | 10.0% |
| !!! | AAGTTTCTTATATATATTTT+GGG | + | chr8.4:68735292-68735311 | MS.gene59540:intron | 10.0% |
| !!! | ATCACTTTATAAATTTTATA+TGG | + | chr8.4:68735268-68735287 | MS.gene59540:intron | 10.0% |
| !! | AATTAGTTATTGCTTAAAAA+AGG | + | chr8.4:68733933-68733952 | MS.gene59540:intron | 15.0% |
| !! | ATATATTAAGTGTAAAAAAG+AGG | - | chr8.4:68733912-68733931 | None:intergenic | 15.0% |
| !! | ATTAGTTATTGCTTAAAAAA+GGG | + | chr8.4:68733934-68733953 | MS.gene59540:intron | 15.0% |
| !! | CAAAAAAAAAAAACTTGAAA+AGG | - | chr8.4:68733758-68733777 | None:intergenic | 15.0% |
| !! | CTTATAATCTGTAAAATTAT+AGG | + | chr8.4:68733815-68733834 | MS.gene59540:intron | 15.0% |
| !!! | AGTTTCTTATATATATTTTG+GGG | + | chr8.4:68735293-68735312 | MS.gene59540:intron | 15.0% |
| !! | AAAAGTAGCAGAAAATATTA+TGG | + | chr8.4:68733605-68733624 | MS.gene59540:CDS | 20.0% |
| !! | CTTAAAACTTACATTAGATA+TGG | - | chr8.4:68735432-68735451 | None:intergenic | 20.0% |
| !! | TTAGTTATTGCTTAAAAAAG+GGG | + | chr8.4:68733935-68733954 | MS.gene59540:intron | 20.0% |
| !!! | AATATACTACTTTGATTTAG+TGG | + | chr8.4:68733879-68733898 | MS.gene59540:intron | 20.0% |
| !!! | ACTTTTTGATTCTAATTTCA+GGG | + | chr8.4:68735583-68735602 | MS.gene59540:intron | 20.0% |
| !!! | GTTTCTTATATATATTTTGG+GGG | + | chr8.4:68735294-68735313 | MS.gene59540:intron | 20.0% |
| !!! | TGACAATTGTTTTAATGTTT+TGG | + | chr8.4:68735113-68735132 | MS.gene59540:intron | 20.0% |
| !!! | TTTCTTATATATATTTTGGG+GGG | + | chr8.4:68735295-68735314 | MS.gene59540:intron | 20.0% |
| ! | AAACATCATAATGCAATGAA+TGG | - | chr8.4:68735473-68735492 | None:intergenic | 25.0% |
| ! | AAATTTACAGTTGAAGGATA+TGG | + | chr8.4:68735145-68735164 | MS.gene59540:intron | 25.0% |
| ! | ACGTGATTTAGATAATTTCA+TGG | + | chr8.4:68733843-68733862 | MS.gene59540:intron | 25.0% |
| ! | CATAAATTAAAACACACAAG+TGG | - | chr8.4:68734251-68734270 | None:intergenic | 25.0% |
| ! | CATTTAGATTATATGACTTG+AGG | + | chr8.4:68735016-68735035 | MS.gene59540:CDS | 25.0% |
| ! | TAGCTTATGAAAACAGATTA+TGG | + | chr8.4:68734092-68734111 | MS.gene59540:intron | 25.0% |
| ! | TGTGTATTGTGTATATTAAC+AGG | + | chr8.4:68734530-68734549 | MS.gene59540:intron | 25.0% |
| ! | TTACGAAAATTTACAGTTGA+AGG | + | chr8.4:68735139-68735158 | MS.gene59540:intron | 25.0% |
| !! | GAAAAATGGACTTATTCAAA+AGG | + | chr8.4:68734391-68734410 | MS.gene59540:CDS | 25.0% |
| !! | GAAAAATTGACTTAGAAGAA+TGG | + | chr8.4:68735358-68735377 | MS.gene59540:CDS | 25.0% |
| !! | TCATTTTCTTTTACTTCTGA+AGG | - | chr8.4:68733666-68733685 | None:intergenic | 25.0% |
| !!! | AAATGGTCTTCTTTTGTTTT+TGG | + | chr8.4:68735519-68735538 | MS.gene59540:intron | 25.0% |
| !!! | CAAGTTTTTTTTTTTTGCCT+TGG | + | chr8.4:68733761-68733780 | MS.gene59540:intron | 25.0% |
| !!! | CACTTTTTGATTCTAATTTC+AGG | + | chr8.4:68735582-68735601 | MS.gene59540:intron | 25.0% |
| !!! | CTTATTTTCATAAGTTCTAC+AGG | + | chr8.4:68734068-68734087 | MS.gene59540:intron | 25.0% |
| ACCATTTACTATTCATTTCG+AGG | - | chr8.4:68735506-68735525 | None:intergenic | 30.0% | |
| ACCTCGAAATGAATAGTAAA+TGG | + | chr8.4:68735502-68735521 | MS.gene59540:intron | 30.0% | |
| AGCACAGTTATTGTGAAAAA+TGG | + | chr8.4:68734377-68734396 | MS.gene59540:CDS | 30.0% | |
| ATAATCACTTCTGCTACAAT+CGG | + | chr8.4:68734181-68734200 | MS.gene59540:intron | 30.0% | |
| ATTAAAACACACAAGTGGAA+AGG | - | chr8.4:68734246-68734265 | None:intergenic | 30.0% | |
| GTACACTATTCATATGCAAT+TGG | - | chr8.4:68734277-68734296 | None:intergenic | 30.0% | |
| GTAGCAGAAAATATTATGGA+TGG | + | chr8.4:68733609-68733628 | MS.gene59540:CDS | 30.0% | |
| TAAATTCGCCAAACTCTATA+TGG | - | chr8.4:68734764-68734783 | None:intergenic | 30.0% | |
| TGTATATATGATCAACATCC+TGG | - | chr8.4:68734893-68734912 | None:intergenic | 30.0% | |
| ! | AAATAAGTTTAAAACGCTCG+CGG | - | chr8.4:68734055-68734074 | None:intergenic | 30.0% |
| ! | CAAGACAATTTAACTTTCCA+AGG | - | chr8.4:68733781-68733800 | None:intergenic | 30.0% |
| !!! | CATTTTATTTTGTCTGCTTG+AGG | - | chr8.4:68734819-68734838 | None:intergenic | 30.0% |
| !!! | GATTTTGGTTGAATCTGATT+TGG | + | chr8.4:68735175-68735194 | MS.gene59540:CDS | 30.0% |
| AATCCAAAAAGCCCTTAAGA+TGG | - | chr8.4:68733975-68733994 | None:intergenic | 35.0% | |
| ACTTGAATCTCTTGTTCGAT+TGG | + | chr8.4:68734445-68734464 | MS.gene59540:intron | 35.0% | |
| AGGAAGCTTTCTTACTTACA+TGG | - | chr8.4:68733738-68733757 | None:intergenic | 35.0% | |
| ATATGATCAACATCCTGGAA+TGG | - | chr8.4:68734888-68734907 | None:intergenic | 35.0% | |
| ATCCAAACAGAACCTGAAAT+TGG | + | chr8.4:68734218-68734237 | MS.gene59540:intron | 35.0% | |
| CATAGTGCATACCATCTTAA+GGG | + | chr8.4:68733961-68733980 | MS.gene59540:intron | 35.0% | |
| GAAAAGATCAAACATCTGCA+TGG | - | chr8.4:68734724-68734743 | None:intergenic | 35.0% | |
| GAAGAATGGAGTGAATATGT+TGG | + | chr8.4:68735372-68735391 | MS.gene59540:CDS | 35.0% | |
| GGCGAATTTATCAGATCTTT+AGG | + | chr8.4:68734774-68734793 | MS.gene59540:CDS | 35.0% | |
| GTCATGTTCTTGAGTAATGA+TGG | - | chr8.4:68735405-68735424 | None:intergenic | 35.0% | |
| TATATCCTATGAAAGACCAC+AGG | - | chr8.4:68735078-68735097 | None:intergenic | 35.0% | |
| TGATGTGGTTGAAACAATTG+TGG | + | chr8.4:68735208-68735227 | MS.gene59540:CDS | 35.0% | |
| TTATATGACTTGAGGCATAC+TGG | + | chr8.4:68735024-68735043 | MS.gene59540:CDS | 35.0% | |
| ! | ATACCATCTTAAGGGCTTTT+TGG | + | chr8.4:68733969-68733988 | MS.gene59540:intron | 35.0% |
| ! | CTGCGAAGAATAATTTTACG+TGG | - | chr8.4:68734993-68735012 | None:intergenic | 35.0% |
| ! | CTTTTCGATGTCAATCACAA+CGG | + | chr8.4:68734738-68734757 | MS.gene59540:CDS | 35.0% |
| ! | GTATAAACAACTGTGTCACT+TGG | - | chr8.4:68735560-68735579 | None:intergenic | 35.0% |
| ! | TTTCTAGAAACAGACACGAA+AGG | + | chr8.4:68735330-68735349 | MS.gene59540:CDS | 35.0% |
| !! | AACCAATTTCAGGTTCTGTT+TGG | - | chr8.4:68734223-68734242 | None:intergenic | 35.0% |
| !!! | GGATATGGTGTTGATGATTT+TGG | + | chr8.4:68735160-68735179 | MS.gene59540:CDS | 35.0% |
| AAACAAACGCAACCTCTTTG+TGG | + | chr8.4:68734584-68734603 | MS.gene59540:CDS | 40.0% | |
| AGTCGTTTGTTTACCATTCC+AGG | + | chr8.4:68734872-68734891 | MS.gene59540:intron | 40.0% | |
| AGTGGAAAGGAACCAATTTC+AGG | - | chr8.4:68734233-68734252 | None:intergenic | 40.0% | |
| ATACTCCTGTGGTCTTTCAT+AGG | + | chr8.4:68735070-68735089 | MS.gene59540:intron | 40.0% | |
| CTTATCTTTGCCAACTTCAC+AGG | - | chr8.4:68733637-68733656 | None:intergenic | 40.0% | |
| GCATAGTGCATACCATCTTA+AGG | + | chr8.4:68733960-68733979 | MS.gene59540:intron | 40.0% | |
| GGTTGAAACAATTGTGGACA+AGG | + | chr8.4:68735214-68735233 | MS.gene59540:CDS | 40.0% | |
| TACATGGTGTTTCAGAAGCA+AGG | - | chr8.4:68733722-68733741 | None:intergenic | 40.0% | |
| TCTGCGTTCAGCATAAAACT+GGG | - | chr8.4:68735626-68735645 | None:intergenic | 40.0% | |
| TTCTGCGTTCAGCATAAAAC+TGG | - | chr8.4:68735627-68735646 | None:intergenic | 40.0% | |
| !! | TTTGGTTCTCTCTGATGATG+TGG | + | chr8.4:68735193-68735212 | MS.gene59540:CDS | 40.0% |
| AACGCAACCTCTTTGTGGAT+AGG | + | chr8.4:68734589-68734608 | MS.gene59540:CDS | 45.0% | |
| ACGCAACCTCTTTGTGGATA+GGG | + | chr8.4:68734590-68734609 | MS.gene59540:CDS | 45.0% | |
| ATGGATGGATCCTGTGAAGT+TGG | + | chr8.4:68733624-68733643 | MS.gene59540:CDS | 45.0% | |
| CACAACGGCCATATAGAGTT+TGG | + | chr8.4:68734753-68734772 | MS.gene59540:CDS | 45.0% | |
| CGAAGAGGTAAATACTCCTG+TGG | + | chr8.4:68735059-68735078 | MS.gene59540:intron | 45.0% | |
| GAAACAGACACGAAAGGTGA+CGG | + | chr8.4:68735336-68735355 | MS.gene59540:CDS | 45.0% | |
| GAGAGAGGTGGAAATCTTGA+AGG | + | chr8.4:68734337-68734356 | MS.gene59540:CDS | 45.0% | |
| TGCATACCCTATCCACAAAG+AGG | - | chr8.4:68734599-68734618 | None:intergenic | 45.0% | |
| TTGTCTGCTTGAGGAGCTTT+AGG | - | chr8.4:68734810-68734829 | None:intergenic | 45.0% | |
| AGCAGTTACTGTGAGAGAGG+TGG | + | chr8.4:68734325-68734344 | MS.gene59540:intron | 50.0% | |
| CCTAGCAGTTACTGTGAGAG+AGG | + | chr8.4:68734322-68734341 | MS.gene59540:intron | 50.0% | |
| CCTCTCTCACAGTAACTGCT+AGG | - | chr8.4:68734325-68734344 | None:intergenic | 50.0% | |
| TGGTTACATTGAGCGCGAAG+AGG | + | chr8.4:68735044-68735063 | MS.gene59540:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 68733588 | 68735667 | 68733588 | ID=MS.gene59540 |
| chr8.4 | mRNA | 68733588 | 68735667 | 68733588 | ID=MS.gene59540.t1;Parent=MS.gene59540 |
| chr8.4 | exon | 68733588 | 68733738 | 68733588 | ID=MS.gene59540.t1.exon1;Parent=MS.gene59540.t1 |
| chr8.4 | CDS | 68733588 | 68733738 | 68733588 | ID=cds.MS.gene59540.t1;Parent=MS.gene59540.t1 |
| chr8.4 | exon | 68734330 | 68734412 | 68734330 | ID=MS.gene59540.t1.exon2;Parent=MS.gene59540.t1 |
| chr8.4 | CDS | 68734330 | 68734412 | 68734330 | ID=cds.MS.gene59540.t1;Parent=MS.gene59540.t1 |
| chr8.4 | exon | 68734552 | 68734611 | 68734552 | ID=MS.gene59540.t1.exon3;Parent=MS.gene59540.t1 |
| chr8.4 | CDS | 68734552 | 68734611 | 68734552 | ID=cds.MS.gene59540.t1;Parent=MS.gene59540.t1 |
| chr8.4 | exon | 68734729 | 68734837 | 68734729 | ID=MS.gene59540.t1.exon4;Parent=MS.gene59540.t1 |
| chr8.4 | CDS | 68734729 | 68734837 | 68734729 | ID=cds.MS.gene59540.t1;Parent=MS.gene59540.t1 |
| chr8.4 | exon | 68735013 | 68735065 | 68735013 | ID=MS.gene59540.t1.exon5;Parent=MS.gene59540.t1 |
| chr8.4 | CDS | 68735013 | 68735065 | 68735013 | ID=cds.MS.gene59540.t1;Parent=MS.gene59540.t1 |
| chr8.4 | exon | 68735155 | 68735235 | 68735155 | ID=MS.gene59540.t1.exon6;Parent=MS.gene59540.t1 |
| chr8.4 | CDS | 68735155 | 68735235 | 68735155 | ID=cds.MS.gene59540.t1;Parent=MS.gene59540.t1 |
| chr8.4 | exon | 68735327 | 68735439 | 68735327 | ID=MS.gene59540.t1.exon7;Parent=MS.gene59540.t1 |
| chr8.4 | CDS | 68735327 | 68735439 | 68735327 | ID=cds.MS.gene59540.t1;Parent=MS.gene59540.t1 |
| chr8.4 | exon | 68735604 | 68735667 | 68735604 | ID=MS.gene59540.t1.exon8;Parent=MS.gene59540.t1 |
| chr8.4 | CDS | 68735604 | 68735667 | 68735604 | ID=cds.MS.gene59540.t1;Parent=MS.gene59540.t1 |
| Gene Sequence |
| Protein sequence |
