Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059080.t1 | XP_003588620.2 | 98.5 | 401 | 6 | 0 | 1 | 401 | 1 | 401 | 9.20E-211 | 742.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059080.t1 | G7I570 | 98.5 | 401 | 6 | 0 | 1 | 401 | 1 | 401 | 6.7e-211 | 742.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055909 | MS.gene059080 | 0.824765 | 6.76E-54 | -1.69E-46 |
| MS.gene055911 | MS.gene059080 | 0.82954 | 4.86E-55 | -1.69E-46 |
| MS.gene057888 | MS.gene059080 | 0.803122 | 4.05E-49 | -1.69E-46 |
| MS.gene058007 | MS.gene059080 | 0.825186 | 5.38E-54 | -1.69E-46 |
| MS.gene058700 | MS.gene059080 | 0.800735 | 1.25E-48 | -1.69E-46 |
| MS.gene059080 | MS.gene059081 | 0.824733 | 6.88E-54 | -1.69E-46 |
| MS.gene059080 | MS.gene059082 | 0.940408 | 2.46E-100 | -1.69E-46 |
| MS.gene059080 | MS.gene059420 | 0.803383 | 3.58E-49 | -1.69E-46 |
| MS.gene059080 | MS.gene059462 | 0.907825 | 3.33E-81 | -1.69E-46 |
| MS.gene059080 | MS.gene059674 | 0.80186 | 7.38E-49 | -1.69E-46 |
| MS.gene059080 | MS.gene065130 | 0.810145 | 1.33E-50 | -1.69E-46 |
| MS.gene059080 | MS.gene068064 | 0.814087 | 1.84E-51 | -1.69E-46 |
| MS.gene059080 | MS.gene069717 | 0.81098 | 8.80E-51 | -1.69E-46 |
| MS.gene059080 | MS.gene069870 | 0.81421 | 1.73E-51 | -1.69E-46 |
| MS.gene059080 | MS.gene070515 | 0.820575 | 6.38E-53 | -1.69E-46 |
| MS.gene059080 | MS.gene070746 | 0.836484 | 9.11E-57 | -1.69E-46 |
| MS.gene059080 | MS.gene20025 | 0.805686 | 1.18E-49 | -1.69E-46 |
| MS.gene059080 | MS.gene20364 | 0.808174 | 3.53E-50 | -1.69E-46 |
| MS.gene059080 | MS.gene20556 | 0.80977 | 1.61E-50 | -1.69E-46 |
| MS.gene059080 | MS.gene21471 | 0.817628 | 2.99E-52 | -1.69E-46 |
| MS.gene059080 | MS.gene24611 | 0.847102 | 1.43E-59 | -1.69E-46 |
| MS.gene059080 | MS.gene27100 | 0.821242 | 4.48E-53 | -1.69E-46 |
| MS.gene059080 | MS.gene35984 | 0.82232 | 2.52E-53 | -1.69E-46 |
| MS.gene059080 | MS.gene36353 | 0.820547 | 6.47E-53 | -1.69E-46 |
| MS.gene059080 | MS.gene36818 | 0.848357 | 6.45E-60 | -1.69E-46 |
| MS.gene059080 | MS.gene36952 | 0.841409 | 4.84E-58 | -1.69E-46 |
| MS.gene059080 | MS.gene38799 | 0.804402 | 2.20E-49 | -1.69E-46 |
| MS.gene059080 | MS.gene39277 | 0.813682 | 2.26E-51 | -1.69E-46 |
| MS.gene059080 | MS.gene42746 | 0.811167 | 8.02E-51 | -1.69E-46 |
| MS.gene059080 | MS.gene44640 | 0.818101 | 2.34E-52 | -1.69E-46 |
| MS.gene059080 | MS.gene46956 | 0.82051 | 6.60E-53 | -1.69E-46 |
| MS.gene059080 | MS.gene47396 | 0.830533 | 2.78E-55 | -1.69E-46 |
| MS.gene059080 | MS.gene47869 | 0.815361 | 9.62E-52 | -1.69E-46 |
| MS.gene059080 | MS.gene48585 | 0.820839 | 5.55E-53 | -1.69E-46 |
| MS.gene059080 | MS.gene51922 | 0.822585 | 2.19E-53 | -1.69E-46 |
| MS.gene059080 | MS.gene52283 | 0.819857 | 9.32E-53 | -1.69E-46 |
| MS.gene059080 | MS.gene67422 | 0.818177 | 2.25E-52 | -1.69E-46 |
| MS.gene059080 | MS.gene68677 | 0.803535 | 3.33E-49 | -1.69E-46 |
| MS.gene059080 | MS.gene71664 | 0.815459 | 9.14E-52 | -1.69E-46 |
| MS.gene059080 | MS.gene71667 | 0.800085 | 1.70E-48 | -1.69E-46 |
| MS.gene059080 | MS.gene71836 | 0.810088 | 1.37E-50 | -1.69E-46 |
| MS.gene059080 | MS.gene74802 | 0.802364 | 5.81E-49 | -1.69E-46 |
| MS.gene059080 | MS.gene74803 | 0.803765 | 2.98E-49 | -1.69E-46 |
| MS.gene059080 | MS.gene75014 | 0.844379 | 7.84E-59 | -1.69E-46 |
| MS.gene059080 | MS.gene76300 | 0.805205 | 1.49E-49 | -1.69E-46 |
| MS.gene059080 | MS.gene76535 | 0.824952 | 6.11E-54 | -1.69E-46 |
| MS.gene059080 | MS.gene85151 | 0.80584 | 1.10E-49 | -1.69E-46 |
| MS.gene059080 | MS.gene88978 | 0.800065 | 1.72E-48 | -1.69E-46 |
| MS.gene059080 | MS.gene90950 | 0.804942 | 1.70E-49 | -1.69E-46 |
| MS.gene059080 | MS.gene92853 | 0.800988 | 1.11E-48 | -1.69E-46 |
| MS.gene059080 | MS.gene98798 | 0.818631 | 1.77E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059080.t1 | MTR_1g009230 | 98.254 | 401 | 7 | 0 | 1 | 401 | 1 | 401 | 0.0 | 804 |
| MS.gene059080.t1 | MTR_3g054010 | 30.392 | 408 | 262 | 7 | 13 | 401 | 1 | 405 | 6.07e-59 | 198 |
| MS.gene059080.t1 | MTR_2g025160 | 31.044 | 364 | 234 | 3 | 54 | 401 | 25 | 387 | 5.79e-53 | 181 |
| MS.gene059080.t1 | MTR_2g025160 | 31.044 | 364 | 234 | 3 | 54 | 401 | 25 | 387 | 7.04e-53 | 182 |
| MS.gene059080.t1 | MTR_8g080210 | 28.528 | 326 | 225 | 4 | 45 | 370 | 42 | 359 | 3.79e-43 | 157 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059080.t1 | AT2G21080 | 57.724 | 369 | 129 | 10 | 40 | 401 | 21 | 369 | 2.92e-132 | 386 |
| MS.gene059080.t1 | AT1G50630 | 37.748 | 302 | 186 | 2 | 53 | 354 | 35 | 334 | 2.30e-66 | 217 |
| MS.gene059080.t1 | AT1G50630 | 37.748 | 302 | 186 | 2 | 53 | 354 | 35 | 334 | 2.88e-66 | 218 |
| MS.gene059080.t1 | AT3G20300 | 33.333 | 381 | 232 | 4 | 41 | 401 | 29 | 407 | 1.01e-64 | 214 |
| MS.gene059080.t1 | AT4G03820 | 31.690 | 284 | 193 | 1 | 68 | 351 | 40 | 322 | 3.95e-47 | 167 |
| MS.gene059080.t1 | AT4G03820 | 31.690 | 284 | 193 | 1 | 68 | 351 | 40 | 322 | 9.78e-47 | 166 |
| MS.gene059080.t1 | AT4G03820 | 31.690 | 284 | 193 | 1 | 68 | 351 | 89 | 371 | 1.29e-46 | 167 |
| MS.gene059080.t1 | AT4G03820 | 31.690 | 284 | 193 | 1 | 68 | 351 | 89 | 371 | 2.77e-46 | 166 |
| MS.gene059080.t1 | AT4G22270 | 31.707 | 287 | 195 | 1 | 68 | 354 | 43 | 328 | 9.12e-45 | 160 |
| MS.gene059080.t1 | AT4G22270 | 31.707 | 287 | 195 | 1 | 68 | 354 | 43 | 328 | 1.05e-44 | 160 |
| MS.gene059080.t1 | AT1G67570 | 30.033 | 303 | 204 | 3 | 62 | 364 | 58 | 352 | 2.23e-41 | 151 |
| MS.gene059080.t1 | AT1G67570 | 30.033 | 303 | 204 | 3 | 62 | 364 | 58 | 352 | 1.40e-40 | 150 |
Find 63 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCAAGAGCACACCATTTA+AGG | 0.198157 | 1.4:-10556498 | None:intergenic |
| AGAAGCAGGTGTTATATTTA+AGG | 0.203283 | 1.4:+10557477 | MS.gene059080:CDS |
| GGCTTCTTCTTGTGCATCTT+AGG | 0.235318 | 1.4:+10557842 | MS.gene059080:CDS |
| GAGAAGACATTCTTCAATTC+TGG | 0.242722 | 1.4:+10557628 | MS.gene059080:CDS |
| GGGTTCTCTATTGCTAGTTT+TGG | 0.258616 | 1.4:+10557594 | MS.gene059080:CDS |
| ACTTTCGGATATGCCTTAAA+TGG | 0.275331 | 1.4:+10556485 | MS.gene059080:CDS |
| AAGCAGATACTTGAACAAAT+AGG | 0.282476 | 1.4:-10556597 | None:intergenic |
| TGAGGATTAGAAGGCAATTA+TGG | 0.287173 | 1.4:+10557506 | MS.gene059080:CDS |
| AGAGGAATTATCAATGTTAA+TGG | 0.296185 | 1.4:-10556350 | None:intergenic |
| TACTATGAGTGTTAGTCAAT+TGG | 0.328654 | 1.4:+10557573 | MS.gene059080:CDS |
| TTGTATTTATGTTACTTTCA+TGG | 0.331455 | 1.4:+10557344 | MS.gene059080:CDS |
| TTTCAGACTAGACAATCTTT+AGG | 0.339756 | 1.4:+10558055 | MS.gene059080:CDS |
| GTCAGAGAAAGATACTCTTT+TGG | 0.360397 | 1.4:-10556374 | None:intergenic |
| TCCTTGGTTGATTCTGTTGA+AGG | 0.377806 | 1.4:-10556322 | None:intergenic |
| AATGTTAATGGTTGTGTCCT+TGG | 0.382680 | 1.4:-10556338 | None:intergenic |
| CTTCAAATATTGAGATTTGA+AGG | 0.390973 | 1.4:+10557424 | MS.gene059080:CDS |
| AGGAACATGTGAGGATTAGA+AGG | 0.398671 | 1.4:+10557497 | MS.gene059080:CDS |
| CTTTCATGGCTGTACAGAAC+TGG | 0.398954 | 1.4:+10557358 | MS.gene059080:CDS |
| ATGATGGCAAGTGCAGATTC+AGG | 0.410877 | 1.4:-10556667 | None:intergenic |
| AGCAGATACTTGAACAAATA+GGG | 0.411563 | 1.4:-10556596 | None:intergenic |
| TTGATGAACTAAGAAACTTT+CGG | 0.420225 | 1.4:+10556470 | MS.gene059080:CDS |
| ACTATGAGTGTTAGTCAATT+GGG | 0.421702 | 1.4:+10557574 | MS.gene059080:CDS |
| ACAAACACAATTGAGTGTAT+TGG | 0.427450 | 1.4:-10557325 | None:intergenic |
| ACAAGCTTGTTCAAGGAGAT+AGG | 0.430827 | 1.4:-10556637 | None:intergenic |
| TCTTAGTTCATCAAAGATCA+TGG | 0.445556 | 1.4:-10556461 | None:intergenic |
| CTCTCTACCGTTTCTTCCGA+AGG | 0.449304 | 1.4:+10556701 | MS.gene059080:CDS |
| GGAAATCCAGCACTAAGGTT+TGG | 0.455769 | 1.4:-10557304 | None:intergenic |
| TGTGTTGTTGCTGTTGCTGT+TGG | 0.458307 | 1.4:-10556396 | None:intergenic |
| CAAATCTCAATATTTGAAGC+TGG | 0.469941 | 1.4:-10557420 | None:intergenic |
| GAAACGGTAGAGAGTGAAGA+AGG | 0.481723 | 1.4:-10556692 | None:intergenic |
| TTGTTTCAATTGCAACAAGA+TGG | 0.484621 | 1.4:+10557897 | MS.gene059080:CDS |
| TATTTGAACAAGCTTGTTCA+AGG | 0.484907 | 1.4:-10556644 | None:intergenic |
| GAGAGTGAAGAAGGAAATGA+TGG | 0.494904 | 1.4:-10556683 | None:intergenic |
| TCAGCACCAAACCTTAGTGC+TGG | 0.495418 | 1.4:+10557298 | MS.gene059080:CDS |
| AATTATGGATTATAAGTCAT+AGG | 0.501167 | 1.4:+10557521 | MS.gene059080:CDS |
| CTTGATCACTCATCTTGTGT+TGG | 0.518508 | 1.4:+10556514 | MS.gene059080:CDS |
| TAAAGATTGTCTAGTCTGAA+AGG | 0.525351 | 1.4:-10558053 | None:intergenic |
| GAAGGGTGTGGATCAGAAGC+AGG | 0.525748 | 1.4:+10557463 | MS.gene059080:CDS |
| ATCAGAATCACTACTATCAC+TGG | 0.527982 | 1.4:-10557987 | None:intergenic |
| CTAAGAATAGAAGTTGCCTT+AGG | 0.539238 | 1.4:-10557129 | None:intergenic |
| AAGGAGATAGGATCAACTTC+AGG | 0.540232 | 1.4:-10556625 | None:intergenic |
| AGAGAGGAACAATGAAAGTG+AGG | 0.542144 | 1.4:-10556567 | None:intergenic |
| CTTCAATTCTGGTGACCTTG+TGG | 0.547529 | 1.4:+10557639 | MS.gene059080:CDS |
| TTTGGTACCTTCGGAAGAAA+CGG | 0.549992 | 1.4:-10556708 | None:intergenic |
| AAAATCACACATAGAGCTCA+AGG | 0.557605 | 1.4:+10557872 | MS.gene059080:CDS |
| GCAAGTTCTACAAAGAAAGA+AGG | 0.565294 | 1.4:-10557241 | None:intergenic |
| GTTCTACAAAGAAAGAAGGT+AGG | 0.566351 | 1.4:-10557237 | None:intergenic |
| ATTCTTTATAATCTGTTGTG+TGG | 0.569662 | 1.4:+10557549 | MS.gene059080:CDS |
| AATGAAAGTGAGGAAGATGA+AGG | 0.573099 | 1.4:-10556557 | None:intergenic |
| GTATTGGAAATCCAGCACTA+AGG | 0.581099 | 1.4:-10557309 | None:intergenic |
| TATGATGCAGGTATGGCCTA+AGG | 0.582377 | 1.4:+10557113 | MS.gene059080:intron |
| GAATGCTTTCTCTAGCTCGC+GGG | 0.594449 | 1.4:-10557194 | None:intergenic |
| TAAGATGGTTGAAGTAACAA+AGG | 0.601645 | 1.4:-10556424 | None:intergenic |
| TATTGATATATGTATGTCTG+AGG | 0.613114 | 1.4:-10558011 | None:intergenic |
| ACAAATAGGGTTGTGAAGAG+AGG | 0.616885 | 1.4:-10556583 | None:intergenic |
| GAAAGGAAGAGAGTCTCTGT+GGG | 0.624738 | 1.4:-10558036 | None:intergenic |
| TGAATGCTTTCTCTAGCTCG+CGG | 0.629956 | 1.4:-10557195 | None:intergenic |
| TGTTCAGCAGTGCAATTGAG+TGG | 0.630731 | 1.4:+10557821 | MS.gene059080:CDS |
| TGAAAGGAAGAGAGTCTCTG+TGG | 0.638408 | 1.4:-10558037 | None:intergenic |
| TTATATTTAAGGAACATGTG+AGG | 0.659712 | 1.4:+10557488 | MS.gene059080:CDS |
| TGCAACAAGATGGCACATGT+TGG | 0.671190 | 1.4:+10557907 | MS.gene059080:CDS |
| ACCTTCAACAGAATCAACCA+AGG | 0.695999 | 1.4:+10556321 | MS.gene059080:CDS |
| GACACTACATATGTTCGTCG+CGG | 0.737129 | 1.4:+10557166 | MS.gene059080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAGAAAAAAATTCTATTTA+AGG | - | chr1.4:10557770-10557789 | None:intergenic | 10.0% |
| !!! | TTTTTTTCTAATTATGTGAT+TGG | + | chr1.4:10557779-10557798 | MS.gene059080:intron | 15.0% |
| !! | TTCAATAGAATTAATCAAAG+CGG | + | chr1.4:10556942-10556961 | MS.gene059080:intron | 20.0% |
| !!! | AATTATGGATTATAAGTCAT+AGG | + | chr1.4:10557521-10557540 | MS.gene059080:CDS | 20.0% |
| !!! | ACTATGATGAAAAATTGTTT+TGG | - | chr1.4:10556729-10556748 | None:intergenic | 20.0% |
| !!! | CTGAAAATGTTATTTTTACT+TGG | - | chr1.4:10557002-10557021 | None:intergenic | 20.0% |
| !!! | TTGTATTTATGTTACTTTCA+TGG | + | chr1.4:10557344-10557363 | MS.gene059080:CDS | 20.0% |
| ! | AATGCAAGAAGAAAAACATT+AGG | - | chr1.4:10556871-10556890 | None:intergenic | 25.0% |
| ! | AGAGGAATTATCAATGTTAA+TGG | - | chr1.4:10556353-10556372 | None:intergenic | 25.0% |
| ! | ATTCTTTATAATCTGTTGTG+TGG | + | chr1.4:10557549-10557568 | MS.gene059080:CDS | 25.0% |
| ! | CTTCAAATATTGAGATTTGA+AGG | + | chr1.4:10557424-10557443 | MS.gene059080:CDS | 25.0% |
| ! | TAGTGTATGTTTGTAACTTA+GGG | - | chr1.4:10557082-10557101 | None:intergenic | 25.0% |
| ! | TATTGATATATGTATGTCTG+AGG | - | chr1.4:10558014-10558033 | None:intergenic | 25.0% |
| ! | TTAGTGTATGTTTGTAACTT+AGG | - | chr1.4:10557083-10557102 | None:intergenic | 25.0% |
| ! | TTATATTTAAGGAACATGTG+AGG | + | chr1.4:10557488-10557507 | MS.gene059080:CDS | 25.0% |
| ! | TTGATGAACTAAGAAACTTT+CGG | + | chr1.4:10556470-10556489 | MS.gene059080:CDS | 25.0% |
| !! | ACAATTTTATTATTTCGCCT+AGG | - | chr1.4:10556834-10556853 | None:intergenic | 25.0% |
| !! | CAATTTTATTATTTCGCCTA+GGG | - | chr1.4:10556833-10556852 | None:intergenic | 25.0% |
| !!! | AAAAATTGTTTTGGTACCTT+CGG | - | chr1.4:10556720-10556739 | None:intergenic | 25.0% |
| AAGCAGATACTTGAACAAAT+AGG | - | chr1.4:10556600-10556619 | None:intergenic | 30.0% | |
| ACAAACACAATTGAGTGTAT+TGG | - | chr1.4:10557328-10557347 | None:intergenic | 30.0% | |
| ACATTAATGTACTTACCACA+AGG | - | chr1.4:10557657-10557676 | None:intergenic | 30.0% | |
| ACTATGAGTGTTAGTCAATT+GGG | + | chr1.4:10557574-10557593 | MS.gene059080:CDS | 30.0% | |
| AGAATTAATCAAAGCGGAAT+AGG | + | chr1.4:10556948-10556967 | MS.gene059080:intron | 30.0% | |
| AGCAGATACTTGAACAAATA+GGG | - | chr1.4:10556599-10556618 | None:intergenic | 30.0% | |
| TAAAGATTGTCTAGTCTGAA+AGG | - | chr1.4:10558056-10558075 | None:intergenic | 30.0% | |
| TAAGATGGTTGAAGTAACAA+AGG | - | chr1.4:10556427-10556446 | None:intergenic | 30.0% | |
| TACTATGAGTGTTAGTCAAT+TGG | + | chr1.4:10557573-10557592 | MS.gene059080:CDS | 30.0% | |
| TCTTAGTTCATCAAAGATCA+TGG | - | chr1.4:10556464-10556483 | None:intergenic | 30.0% | |
| TTGTTTCAATTGCAACAAGA+TGG | + | chr1.4:10557897-10557916 | MS.gene059080:CDS | 30.0% | |
| ! | AGAAGCAGGTGTTATATTTA+AGG | + | chr1.4:10557477-10557496 | MS.gene059080:CDS | 30.0% |
| ! | CAAATCTCAATATTTGAAGC+TGG | - | chr1.4:10557423-10557442 | None:intergenic | 30.0% |
| ! | TATTTGAACAAGCTTGTTCA+AGG | - | chr1.4:10556647-10556666 | None:intergenic | 30.0% |
| !! | GATTTTGATCTTGCATAAGA+TGG | - | chr1.4:10556442-10556461 | None:intergenic | 30.0% |
| AAAATCACACATAGAGCTCA+AGG | + | chr1.4:10557872-10557891 | MS.gene059080:CDS | 35.0% | |
| AAACCAATGTGTTATGATGC+AGG | + | chr1.4:10557101-10557120 | MS.gene059080:intron | 35.0% | |
| AATGAAAGTGAGGAAGATGA+AGG | - | chr1.4:10556560-10556579 | None:intergenic | 35.0% | |
| AATGTGTTATGATGCAGGTA+TGG | + | chr1.4:10557106-10557125 | MS.gene059080:intron | 35.0% | |
| AATGTTAATGGTTGTGTCCT+TGG | - | chr1.4:10556341-10556360 | None:intergenic | 35.0% | |
| ACTTTCGGATATGCCTTAAA+TGG | + | chr1.4:10556485-10556504 | MS.gene059080:CDS | 35.0% | |
| ATACCTGCATCATAACACAT+TGG | - | chr1.4:10557107-10557126 | None:intergenic | 35.0% | |
| ATCAGAATCACTACTATCAC+TGG | - | chr1.4:10557990-10558009 | None:intergenic | 35.0% | |
| CTAAGAATAGAAGTTGCCTT+AGG | - | chr1.4:10557132-10557151 | None:intergenic | 35.0% | |
| GAGAAGACATTCTTCAATTC+TGG | + | chr1.4:10557628-10557647 | MS.gene059080:CDS | 35.0% | |
| GCAAGTTCTACAAAGAAAGA+AGG | - | chr1.4:10557244-10557263 | None:intergenic | 35.0% | |
| GTTCTACAAAGAAAGAAGGT+AGG | - | chr1.4:10557240-10557259 | None:intergenic | 35.0% | |
| TGAAATTGTGATCACAGCTA+GGG | + | chr1.4:10556786-10556805 | MS.gene059080:intron | 35.0% | |
| TGAGGATTAGAAGGCAATTA+TGG | + | chr1.4:10557506-10557525 | MS.gene059080:CDS | 35.0% | |
| TTGAAATTGTGATCACAGCT+AGG | + | chr1.4:10556785-10556804 | MS.gene059080:intron | 35.0% | |
| TTTCAGTGCCCCTAAAAAAA+TGG | + | chr1.4:10557016-10557035 | MS.gene059080:intron | 35.0% | |
| ! | GTCAGAGAAAGATACTCTTT+TGG | - | chr1.4:10556377-10556396 | None:intergenic | 35.0% |
| ! | GTGTTCACAAGCTTTTTGAA+GGG | + | chr1.4:10557446-10557465 | MS.gene059080:CDS | 35.0% |
| !! | GAAAGATACTCTTTTGGAAG+AGG | - | chr1.4:10556371-10556390 | None:intergenic | 35.0% |
| AAGGAGATAGGATCAACTTC+AGG | - | chr1.4:10556628-10556647 | None:intergenic | 40.0% | |
| ACAAATAGGGTTGTGAAGAG+AGG | - | chr1.4:10556586-10556605 | None:intergenic | 40.0% | |
| ACCTTCAACAGAATCAACCA+AGG | + | chr1.4:10556321-10556340 | MS.gene059080:CDS | 40.0% | |
| AGAGAGGAACAATGAAAGTG+AGG | - | chr1.4:10556570-10556589 | None:intergenic | 40.0% | |
| AGGAACATGTGAGGATTAGA+AGG | + | chr1.4:10557497-10557516 | MS.gene059080:CDS | 40.0% | |
| CCCTAAAAAAATGGTGTCCT+GGG | + | chr1.4:10557025-10557044 | MS.gene059080:intron | 40.0% | |
| CTTGATCACTCATCTTGTGT+TGG | + | chr1.4:10556514-10556533 | MS.gene059080:CDS | 40.0% | |
| GAGAGTGAAGAAGGAAATGA+TGG | - | chr1.4:10556686-10556705 | None:intergenic | 40.0% | |
| GTATTGGAAATCCAGCACTA+AGG | - | chr1.4:10557312-10557331 | None:intergenic | 40.0% | |
| TTTGGTACCTTCGGAAGAAA+CGG | - | chr1.4:10556711-10556730 | None:intergenic | 40.0% | |
| ! | ACAAGCTTGTTCAAGGAGAT+AGG | - | chr1.4:10556640-10556659 | None:intergenic | 40.0% |
| ! | GATCAAGAGCACACCATTTA+AGG | - | chr1.4:10556501-10556520 | None:intergenic | 40.0% |
| ! | GGTGTTCACAAGCTTTTTGA+AGG | + | chr1.4:10557445-10557464 | MS.gene059080:CDS | 40.0% |
| ! | TCCTTGGTTGATTCTGTTGA+AGG | - | chr1.4:10556325-10556344 | None:intergenic | 40.0% |
| !! | GGGTTCTCTATTGCTAGTTT+TGG | + | chr1.4:10557594-10557613 | MS.gene059080:CDS | 40.0% |
| !!! | CCAGGACACCATTTTTTTAG+GGG | - | chr1.4:10557027-10557046 | None:intergenic | 40.0% |
| !!! | CCCAGGACACCATTTTTTTA+GGG | - | chr1.4:10557028-10557047 | None:intergenic | 40.0% |
| ATGATGGCAAGTGCAGATTC+AGG | - | chr1.4:10556670-10556689 | None:intergenic | 45.0% | |
| CCCCTAAAAAAATGGTGTCC+TGG | + | chr1.4:10557024-10557043 | MS.gene059080:intron | 45.0% | |
| CTTCAATTCTGGTGACCTTG+TGG | + | chr1.4:10557639-10557658 | MS.gene059080:CDS | 45.0% | |
| CTTTCATGGCTGTACAGAAC+TGG | + | chr1.4:10557358-10557377 | MS.gene059080:CDS | 45.0% | |
| GAAACGGTAGAGAGTGAAGA+AGG | - | chr1.4:10556695-10556714 | None:intergenic | 45.0% | |
| GAAAGGAAGAGAGTCTCTGT+GGG | - | chr1.4:10558039-10558058 | None:intergenic | 45.0% | |
| GACACTACATATGTTCGTCG+CGG | + | chr1.4:10557166-10557185 | MS.gene059080:CDS | 45.0% | |
| GGAAATCCAGCACTAAGGTT+TGG | - | chr1.4:10557307-10557326 | None:intergenic | 45.0% | |
| GGCTTCTTCTTGTGCATCTT+AGG | + | chr1.4:10557842-10557861 | MS.gene059080:CDS | 45.0% | |
| TATGATGCAGGTATGGCCTA+AGG | + | chr1.4:10557113-10557132 | MS.gene059080:intron | 45.0% | |
| TGAAAGGAAGAGAGTCTCTG+TGG | - | chr1.4:10558040-10558059 | None:intergenic | 45.0% | |
| TGCAACAAGATGGCACATGT+TGG | + | chr1.4:10557907-10557926 | MS.gene059080:CDS | 45.0% | |
| TGTTCAGCAGTGCAATTGAG+TGG | + | chr1.4:10557821-10557840 | MS.gene059080:CDS | 45.0% | |
| ! | TGAATGCTTTCTCTAGCTCG+CGG | - | chr1.4:10557198-10557217 | None:intergenic | 45.0% |
| ! | TGTGTTGTTGCTGTTGCTGT+TGG | - | chr1.4:10556399-10556418 | None:intergenic | 45.0% |
| !! | CACAAGCTTTTTGAAGGGTG+TGG | + | chr1.4:10557451-10557470 | MS.gene059080:CDS | 45.0% |
| !!! | GCCCAGGACACCATTTTTTT+AGG | - | chr1.4:10557029-10557048 | None:intergenic | 45.0% |
| ATTGTGATCACAGCTAGGGC+CGG | + | chr1.4:10556790-10556809 | MS.gene059080:intron | 50.0% | |
| CTCTCTACCGTTTCTTCCGA+AGG | + | chr1.4:10556701-10556720 | MS.gene059080:CDS | 50.0% | |
| GGCACCAAGAATCTTAGGAC+CGG | - | chr1.4:10556812-10556831 | None:intergenic | 50.0% | |
| GTAACTTAGGGTAGCCCTGA+GGG | - | chr1.4:10557070-10557089 | None:intergenic | 50.0% | |
| TCAGCACCAAACCTTAGTGC+TGG | + | chr1.4:10557298-10557317 | MS.gene059080:CDS | 50.0% | |
| TGTAACTTAGGGTAGCCCTG+AGG | - | chr1.4:10557071-10557090 | None:intergenic | 50.0% | |
| ! | CCTAGGGCACCAAGAATCTT+AGG | - | chr1.4:10556817-10556836 | None:intergenic | 50.0% |
| ! | GAATGCTTTCTCTAGCTCGC+GGG | - | chr1.4:10557197-10557216 | None:intergenic | 50.0% |
| !! | CCTAAGATTCTTGGTGCCCT+AGG | + | chr1.4:10556814-10556833 | MS.gene059080:intron | 50.0% |
| AGGGCCGGTCCTAAGATTCT+TGG | + | chr1.4:10556805-10556824 | MS.gene059080:intron | 55.0% | |
| ! | GAAGGGTGTGGATCAGAAGC+AGG | + | chr1.4:10557463-10557482 | MS.gene059080:CDS | 55.0% |
| ACTTAGGGTAGCCCTGAGGG+TGG | - | chr1.4:10557067-10557086 | None:intergenic | 60.0% | |
| CTTAGGGTAGCCCTGAGGGT+GGG | - | chr1.4:10557066-10557085 | None:intergenic | 60.0% | |
| AGGGTAGCCCTGAGGGTGGG+CGG | - | chr1.4:10557063-10557082 | None:intergenic | 70.0% | |
| AGCCCTGAGGGTGGGCGGGA+GGG | - | chr1.4:10557058-10557077 | None:intergenic | 75.0% | |
| GGGTAGCCCTGAGGGTGGGC+GGG | - | chr1.4:10557062-10557081 | None:intergenic | 75.0% | |
| TAGCCCTGAGGGTGGGCGGG+AGG | - | chr1.4:10557059-10557078 | None:intergenic | 75.0% | |
| ! | CTGAGGGTGGGCGGGAGGGG+CGG | - | chr1.4:10557054-10557073 | None:intergenic | 80.0% |
| ! | GCCCCTCCCGCCCACCCTCA+GGG | + | chr1.4:10557053-10557072 | MS.gene059080:intron | 80.0% |
| ! | GCCCTGAGGGTGGGCGGGAG+GGG | - | chr1.4:10557057-10557076 | None:intergenic | 80.0% |
| ! | CGCCCCTCCCGCCCACCCTC+AGG | + | chr1.4:10557052-10557071 | MS.gene059080:intron | 85.0% |
| ! | GGCGGGAGGGGCGGCAGCCC+AGG | - | chr1.4:10557045-10557064 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 10556316 | 10558076 | 10556316 | ID=MS.gene059080 |
| chr1.4 | mRNA | 10556316 | 10558076 | 10556316 | ID=MS.gene059080.t1;Parent=MS.gene059080 |
| chr1.4 | exon | 10556316 | 10556722 | 10556316 | ID=MS.gene059080.t1.exon1;Parent=MS.gene059080.t1 |
| chr1.4 | CDS | 10556316 | 10556722 | 10556316 | ID=cds.MS.gene059080.t1;Parent=MS.gene059080.t1 |
| chr1.4 | exon | 10557123 | 10557660 | 10557123 | ID=MS.gene059080.t1.exon2;Parent=MS.gene059080.t1 |
| chr1.4 | CDS | 10557123 | 10557660 | 10557123 | ID=cds.MS.gene059080.t1;Parent=MS.gene059080.t1 |
| chr1.4 | exon | 10557818 | 10558076 | 10557818 | ID=MS.gene059080.t1.exon3;Parent=MS.gene059080.t1 |
| chr1.4 | CDS | 10557818 | 10558076 | 10557818 | ID=cds.MS.gene059080.t1;Parent=MS.gene059080.t1 |
| Gene Sequence |
| Protein sequence |
