AlfalfaGEDB | MS.gene069717

M. sativa cultivar XinJiangDaYe / MS.gene069717

KEGG: -
GO: -
PFAM: PF10184.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069717.t1	XP_013445321.1	94	268	10	2	1	262	1	268	2.80E-139	504.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069717.t1	Q32KT5	28.0	161	102	5	75	221	147	307	3.1e-06	53.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069717.t1	A0A072TPP7	94.0	268	10	2	1	262	1	268	2.0e-139	504.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049356	MS.gene069717	0.846408	2.21E-59	-1.69E-46
MS.gene049396	MS.gene069717	0.822384	2.44E-53	-1.69E-46
MS.gene049757	MS.gene069717	0.805391	1.37E-49	-1.69E-46
MS.gene050060	MS.gene069717	0.80578	1.13E-49	-1.69E-46
MS.gene050426	MS.gene069717	-0.838664	2.51E-57	-1.69E-46
MS.gene050670	MS.gene069717	0.863807	1.91E-64	-1.69E-46
MS.gene050971	MS.gene069717	0.842	3.38E-58	-1.69E-46
MS.gene05105	MS.gene069717	0.813245	2.82E-51	-1.69E-46
MS.gene051360	MS.gene069717	0.805935	1.05E-49	-1.69E-46
MS.gene051521	MS.gene069717	0.820895	5.39E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene038976	MS.gene069717	PPI
MS.gene045724	MS.gene069717	PPI
MS.gene069717	MS.gene42747	PPI
MS.gene069717	MS.gene36105	PPI
MS.gene069717	MS.gene038976	PPI
MS.gene069717	MS.gene62495	PPI
MS.gene069717	MS.gene068946	PPI
MS.gene069717	MS.gene066192	PPI
MS.gene42746	MS.gene069717	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069717.t1	MTR_8g046460	93.284	268	12	2	1	262	1	268	5.61e-178	490
MS.gene069717.t1	MTR_2g064370	70.522	268	72	4	1	262	1	267	3.79e-131	372
MS.gene069717.t1	MTR_8g028425	57.143	154	63	2	72	223	92	244	5.45e-65	203

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069717.t1	AT1G16320	69.231	221	67	1	43	262	53	273	4.49e-117	336
MS.gene069717.t1	AT1G79510	60.714	280	87	5	1	262	1	275	1.99e-116	335
MS.gene069717.t1	AT1G79510	60.714	280	87	5	1	262	1	275	1.99e-116	335
MS.gene069717.t1	AT2G46220	57.325	157	64	2	69	223	81	236	2.50e-66	206

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Find 57 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGACCCCATGAAAATGT+TGG	0.541364	8.4:-54306960	None:intergenic
AATAAAGAGTATTGAGAAAT+GGG	0.349742	8.4:-54305962	None:intergenic
AATGTTGGATTTGGACTAGC+AGG	0.451399	8.4:-54306945	None:intergenic
AATTCACCTTTAGCTTCCCA+TGG	0.534577	8.4:-54306792	None:intergenic
ACCAAATCCAAAACCGAAAC+CGG	0.442141	8.4:-54306912	None:intergenic
ACCGGTTTCATCATCTTCTG+TGG	0.561359	8.4:-54306894	None:intergenic
ACCTATAAATATCATAATTA+AGG	0.297853	8.4:-54306156	None:intergenic
ACCTTAATTATGATATTTAT+AGG	0.278702	8.4:+54306155	MS.gene069717:CDS
AGAAGTACAAGTTGATCTTT+TGG	0.270946	8.4:+54306649	MS.gene069717:CDS
AGAATGTGATATTGATCAGG+TGG	0.610163	8.4:+54306745	MS.gene069717:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGTCGATATAGTTAGGT+CGG	+	chr8.4:54306407-54306426	MS.gene069717:intron	30.0%
AGGTCTTTAACAAAGATCAA+AGG	-	chr8.4:54306139-54306158	None:intergenic	30.0%
ATACCAGTAAATGTGTTCAA+AGG	-	chr8.4:54306627-54306646	None:intergenic	30.0%
ATCAATATCACATTCTCTGA+AGG	-	chr8.4:54306741-54306760	None:intergenic	30.0%
GTTTGGATGTATACAGAATA+TGG	+	chr8.4:54306712-54306731	MS.gene069717:CDS	30.0%
TAAACAGAATCAGCATCAAA+AGG	+	chr8.4:54306060-54306079	MS.gene069717:CDS	30.0%
TACCAGTAAATGTGTTCAAA+GGG	-	chr8.4:54306626-54306645	None:intergenic	30.0%
TGGTAAATGTCGATATAGTT+AGG	+	chr8.4:54306403-54306422	MS.gene069717:intron	30.0%
TGTTTATCTTGAGTAGCTAA+TGG	-	chr8.4:54306046-54306065	None:intergenic	30.0%
ACCAATATATGCACATCCAA+AGG	-	chr8.4:54306332-54306351	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	54305875	54307088	54305875	ID=MS.gene069717
chr8.4	mRNA	54305875	54307088	54305875	ID=MS.gene069717.t1;Parent=MS.gene069717
chr8.4	exon	54305875	54306176	54305875	ID=MS.gene069717.t1.exon1;Parent=MS.gene069717.t1
chr8.4	CDS	54305875	54306176	54305875	ID=cds.MS.gene069717.t1;Parent=MS.gene069717.t1
chr8.4	exon	54306602	54307088	54306602	ID=MS.gene069717.t1.exon2;Parent=MS.gene069717.t1
chr8.4	CDS	54306602	54307088	54306602	ID=cds.MS.gene069717.t1;Parent=MS.gene069717.t1

Gene Sequence

>MS.gene069717

ATGGCTTTTCCTCTTTGCAATCTCAATCTTTCTCTATTACCTCAATCCAAATCAAGATTCAAACACCAAACACTGTCTTCTTCAAAACCCATTTCTCAATACTCTTTATTCTTCTCTTCTTCTCCTTCAGTCCAAAGTTTCACTGCACAGGTTGCTCAGGTGAATTCACCATTAGCTACTCAAGATAAACAGAATCAGCATCAAAAGGATGAGTTTTATCTCAATCTTGGTGTTGCTGTTAGAACCCTTCGTGAGGATATGCCTTTGATCTTTGTTAAAGACCTTAATTATGATATTTATAGGTAATTTTCTCATCTGGGTATGTAAAGTTTCTTGCTTTTCATATAAATATATGGTTTTTAATTTGAATTGTGTTATTTCTAGGTGAAAAAAAATTGGATTTTTAATGTTGGGTTTGGTAATTTTAAGGATGATGTAATTAATATTTATGGACCCTTTGGATGTGCATATATTGGTTTTTAATTCGAATTTAGTTAATTCTGAGTAATCTGTAAGGCCTAGCTCAACTGGTAAATGTCGATATAGTTAGGTCGGACACCTTAACCTGGGTTCGAACGACTCGCAGTCAAGTGGTGTATGAGAGTTTAAAACTCATTGCCACTTTCTATGTATAAAAAAAGTTAATTTTGAGTGGAAAAAAATTGGGTTTTTATTCTGTGCAAAAATATAGTTAGAATTTTAATGTTGGGTTTGATAATTTTTTCAGGGATGATGTAACATTTTTGGACCCTTTGAACACATTTACTGGTATTGAGAAGTACAAGTTGATCTTTTGGGCATTGAGGTTTCATGGTAGAATTTTGTTTCGTGAGATTGGTTTGGATGTATACAGAATATGGCAGCCTTCAGAGAATGTGATATTGATCAGGTGGAACTTGAGGGGTGTGCCTAGGGTTCCATGGGAAGCTAAAGGTGAATTTCAAGGTACTTCGCGGTATAAATTGGATCGGAACGGTAAGATTTATGAACACAAAGTTGATAATTTAGCATTCAACTTTCCACAGAAGATGATGAAACCGGTTTCGGTTTTGGATTTGGTTACTGCTTGCCCTGCTAGTCCAAATCCAACATTTTCATGGGGTCCTTTGGATTCTAGTTCATGTTCATGGATAGAATTATATCAAGCAGTTAAGCACACATTGGATGAAGAAAGACAGTTGTTACCACCAGATGGTTTGGCTGCATGTTCATAG

Protein sequence

>MS.gene069717.t1

MAFPLCNLNLSLLPQSKSRFKHQTLSSSKPISQYSLFFSSSPSVQSFTAQVAQVNSPLATQDKQNQHQKDEFYLNLGVAVRTLREDMPLIFVKDLNYDIYRDDVTFLDPLNTFTGIEKYKLIFWALRFHGRILFREIGLDVYRIWQPSENVILIRWNLRGVPRVPWEAKGEFQGTSRYKLDRNGKIYEHKVDNLAFNFPQKMMKPVSVLDLVTACPASPNPTFSWGPLDSSSCSWIELYQAVKHTLDEERQLLPPDGLAACS