Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069717.t1 | XP_013445321.1 | 94 | 268 | 10 | 2 | 1 | 262 | 1 | 268 | 2.80E-139 | 504.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069717.t1 | Q32KT5 | 28.0 | 161 | 102 | 5 | 75 | 221 | 147 | 307 | 3.1e-06 | 53.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069717.t1 | A0A072TPP7 | 94.0 | 268 | 10 | 2 | 1 | 262 | 1 | 268 | 2.0e-139 | 504.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene069717 | 0.846408 | 2.21E-59 | -1.69E-46 |
| MS.gene049396 | MS.gene069717 | 0.822384 | 2.44E-53 | -1.69E-46 |
| MS.gene049757 | MS.gene069717 | 0.805391 | 1.37E-49 | -1.69E-46 |
| MS.gene050060 | MS.gene069717 | 0.80578 | 1.13E-49 | -1.69E-46 |
| MS.gene050426 | MS.gene069717 | -0.838664 | 2.51E-57 | -1.69E-46 |
| MS.gene050670 | MS.gene069717 | 0.863807 | 1.91E-64 | -1.69E-46 |
| MS.gene050971 | MS.gene069717 | 0.842 | 3.38E-58 | -1.69E-46 |
| MS.gene05105 | MS.gene069717 | 0.813245 | 2.82E-51 | -1.69E-46 |
| MS.gene051360 | MS.gene069717 | 0.805935 | 1.05E-49 | -1.69E-46 |
| MS.gene051521 | MS.gene069717 | 0.820895 | 5.39E-53 | -1.69E-46 |
| MS.gene051525 | MS.gene069717 | 0.853362 | 2.51E-61 | -1.69E-46 |
| MS.gene051588 | MS.gene069717 | 0.818969 | 1.49E-52 | -1.69E-46 |
| MS.gene052011 | MS.gene069717 | -0.827416 | 1.58E-54 | -1.69E-46 |
| MS.gene052077 | MS.gene069717 | 0.823692 | 1.21E-53 | -1.69E-46 |
| MS.gene052134 | MS.gene069717 | 0.803854 | 2.86E-49 | -1.69E-46 |
| MS.gene052135 | MS.gene069717 | 0.816019 | 6.86E-52 | -1.69E-46 |
| MS.gene052136 | MS.gene069717 | 0.80636 | 8.55E-50 | -1.69E-46 |
| MS.gene052188 | MS.gene069717 | 0.838292 | 3.14E-57 | -1.69E-46 |
| MS.gene052253 | MS.gene069717 | 0.834953 | 2.22E-56 | -1.69E-46 |
| MS.gene052340 | MS.gene069717 | 0.830782 | 2.42E-55 | -1.69E-46 |
| MS.gene052346 | MS.gene069717 | 0.811039 | 8.55E-51 | -1.69E-46 |
| MS.gene052414 | MS.gene069717 | 0.849225 | 3.71E-60 | -1.69E-46 |
| MS.gene052485 | MS.gene069717 | 0.805981 | 1.03E-49 | -1.69E-46 |
| MS.gene053169 | MS.gene069717 | 0.876148 | 1.76E-68 | -1.69E-46 |
| MS.gene05316 | MS.gene069717 | 0.845426 | 4.09E-59 | -1.69E-46 |
| MS.gene053449 | MS.gene069717 | 0.836583 | 8.59E-57 | -1.69E-46 |
| MS.gene053758 | MS.gene069717 | 0.823739 | 1.18E-53 | -1.69E-46 |
| MS.gene053889 | MS.gene069717 | 0.814973 | 1.17E-51 | -1.69E-46 |
| MS.gene053912 | MS.gene069717 | 0.820396 | 7.01E-53 | -1.69E-46 |
| MS.gene054183 | MS.gene069717 | 0.84006 | 1.09E-57 | -1.69E-46 |
| MS.gene054349 | MS.gene069717 | 0.847377 | 1.20E-59 | -1.69E-46 |
| MS.gene054556 | MS.gene069717 | 0.88379 | 3.33E-71 | -1.69E-46 |
| MS.gene055116 | MS.gene069717 | 0.814931 | 1.20E-51 | -1.69E-46 |
| MS.gene055369 | MS.gene069717 | 0.825812 | 3.82E-54 | -1.69E-46 |
| MS.gene055539 | MS.gene069717 | 0.820305 | 7.36E-53 | -1.69E-46 |
| MS.gene05553 | MS.gene069717 | 0.825931 | 3.58E-54 | -1.69E-46 |
| MS.gene05556 | MS.gene069717 | 0.805236 | 1.47E-49 | -1.69E-46 |
| MS.gene055666 | MS.gene069717 | 0.802431 | 5.63E-49 | -1.69E-46 |
| MS.gene055741 | MS.gene069717 | 0.855198 | 7.41E-62 | -1.69E-46 |
| MS.gene055744 | MS.gene069717 | 0.867537 | 1.27E-65 | -1.69E-46 |
| MS.gene055909 | MS.gene069717 | 0.841946 | 3.49E-58 | -1.69E-46 |
| MS.gene055911 | MS.gene069717 | 0.84889 | 4.59E-60 | -1.69E-46 |
| MS.gene056233 | MS.gene069717 | 0.810689 | 1.02E-50 | -1.69E-46 |
| MS.gene056422 | MS.gene069717 | 0.813084 | 3.06E-51 | -1.69E-46 |
| MS.gene056447 | MS.gene069717 | 0.806539 | 7.83E-50 | -1.69E-46 |
| MS.gene056511 | MS.gene069717 | 0.853827 | 1.85E-61 | -1.69E-46 |
| MS.gene056514 | MS.gene069717 | 0.843869 | 1.07E-58 | -1.69E-46 |
| MS.gene056659 | MS.gene069717 | 0.816405 | 5.62E-52 | -1.69E-46 |
| MS.gene056723 | MS.gene069717 | 0.829288 | 5.60E-55 | -1.69E-46 |
| MS.gene056876 | MS.gene069717 | 0.813503 | 2.48E-51 | -1.69E-46 |
| MS.gene057019 | MS.gene069717 | 0.812895 | 3.37E-51 | -1.69E-46 |
| MS.gene057124 | MS.gene069717 | 0.810526 | 1.10E-50 | -1.69E-46 |
| MS.gene057396 | MS.gene069717 | 0.844972 | 5.43E-59 | -1.69E-46 |
| MS.gene057476 | MS.gene069717 | 0.801862 | 7.37E-49 | -1.69E-46 |
| MS.gene057609 | MS.gene069717 | 0.815239 | 1.02E-51 | -1.69E-46 |
| MS.gene057610 | MS.gene069717 | 0.841335 | 5.06E-58 | -1.69E-46 |
| MS.gene057749 | MS.gene069717 | 0.826433 | 2.72E-54 | -1.69E-46 |
| MS.gene057823 | MS.gene069717 | 0.832147 | 1.12E-55 | -1.69E-46 |
| MS.gene057825 | MS.gene069717 | 0.809348 | 1.98E-50 | -1.69E-46 |
| MS.gene058007 | MS.gene069717 | 0.862127 | 6.32E-64 | -1.69E-46 |
| MS.gene058075 | MS.gene069717 | 0.824728 | 6.90E-54 | -1.69E-46 |
| MS.gene058120 | MS.gene069717 | 0.805665 | 1.20E-49 | -1.69E-46 |
| MS.gene058376 | MS.gene069717 | 0.836269 | 1.03E-56 | -1.69E-46 |
| MS.gene058444 | MS.gene069717 | 0.82234 | 2.50E-53 | -1.69E-46 |
| MS.gene058700 | MS.gene069717 | 0.848814 | 4.82E-60 | -1.69E-46 |
| MS.gene058928 | MS.gene069717 | 0.842633 | 2.29E-58 | -1.69E-46 |
| MS.gene058948 | MS.gene069717 | 0.812825 | 3.49E-51 | -1.69E-46 |
| MS.gene058949 | MS.gene069717 | 0.80471 | 1.90E-49 | -1.69E-46 |
| MS.gene058995 | MS.gene069717 | 0.805826 | 1.11E-49 | -1.69E-46 |
| MS.gene059011 | MS.gene069717 | 0.806201 | 9.23E-50 | -1.69E-46 |
| MS.gene059080 | MS.gene069717 | 0.81098 | 8.80E-51 | -1.69E-46 |
| MS.gene059082 | MS.gene069717 | 0.847839 | 8.97E-60 | -1.69E-46 |
| MS.gene059366 | MS.gene069717 | 0.829315 | 5.52E-55 | -1.69E-46 |
| MS.gene059420 | MS.gene069717 | 0.863037 | 3.31E-64 | -1.69E-46 |
| MS.gene059462 | MS.gene069717 | 0.847646 | 1.01E-59 | -1.69E-46 |
| MS.gene059674 | MS.gene069717 | 0.850677 | 1.46E-60 | -1.69E-46 |
| MS.gene059688 | MS.gene069717 | 0.823253 | 1.53E-53 | -1.69E-46 |
| MS.gene059695 | MS.gene069717 | 0.800858 | 1.18E-48 | -1.69E-46 |
| MS.gene059807 | MS.gene069717 | 0.901656 | 2.15E-78 | -1.69E-46 |
| MS.gene059870 | MS.gene069717 | 0.802865 | 4.58E-49 | -1.69E-46 |
| MS.gene059876 | MS.gene069717 | 0.838759 | 2.38E-57 | -1.69E-46 |
| MS.gene059933 | MS.gene069717 | 0.826452 | 2.69E-54 | -1.69E-46 |
| MS.gene060247 | MS.gene069717 | 0.814165 | 1.77E-51 | -1.69E-46 |
| MS.gene060372 | MS.gene069717 | 0.846391 | 2.24E-59 | -1.69E-46 |
| MS.gene060401 | MS.gene069717 | 0.808335 | 3.26E-50 | -1.69E-46 |
| MS.gene060403 | MS.gene069717 | 0.829657 | 4.55E-55 | -1.69E-46 |
| MS.gene060837 | MS.gene069717 | 0.819815 | 9.53E-53 | -1.69E-46 |
| MS.gene060986 | MS.gene069717 | 0.820712 | 5.93E-53 | -1.69E-46 |
| MS.gene061154 | MS.gene069717 | 0.844983 | 5.39E-59 | -1.69E-46 |
| MS.gene061159 | MS.gene069717 | 0.820752 | 5.81E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene069717 | MS.gene42747 | PPI |
| MS.gene069717 | MS.gene36105 | PPI |
| MS.gene069717 | MS.gene038976 | PPI |
| MS.gene42746 | MS.gene069717 | PPI |
| MS.gene045724 | MS.gene069717 | PPI |
| MS.gene069717 | MS.gene62495 | PPI |
| MS.gene069717 | MS.gene068946 | PPI |
| MS.gene069717 | MS.gene066192 | PPI |
| MS.gene038976 | MS.gene069717 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069717.t1 | MTR_8g046460 | 93.284 | 268 | 12 | 2 | 1 | 262 | 1 | 268 | 5.61e-178 | 490 |
| MS.gene069717.t1 | MTR_2g064370 | 70.522 | 268 | 72 | 4 | 1 | 262 | 1 | 267 | 3.79e-131 | 372 |
| MS.gene069717.t1 | MTR_8g028425 | 57.143 | 154 | 63 | 2 | 72 | 223 | 92 | 244 | 5.45e-65 | 203 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069717.t1 | AT1G16320 | 69.231 | 221 | 67 | 1 | 43 | 262 | 53 | 273 | 4.49e-117 | 336 |
| MS.gene069717.t1 | AT1G79510 | 60.714 | 280 | 87 | 5 | 1 | 262 | 1 | 275 | 1.99e-116 | 335 |
| MS.gene069717.t1 | AT1G79510 | 60.714 | 280 | 87 | 5 | 1 | 262 | 1 | 275 | 1.99e-116 | 335 |
| MS.gene069717.t1 | AT2G46220 | 57.325 | 157 | 64 | 2 | 69 | 223 | 81 | 236 | 2.50e-66 | 206 |
Find 57 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGAAACCGGTTTCGGTTT+TGG | 0.220818 | 8.4:+54306905 | MS.gene069717:CDS |
| GACCCTTTGAACACATTTAC+TGG | 0.240823 | 8.4:+54306621 | MS.gene069717:CDS |
| AGAAGTACAAGTTGATCTTT+TGG | 0.270946 | 8.4:+54306649 | MS.gene069717:CDS |
| AGGTACTTCGCGGTATAAAT+TGG | 0.272271 | 8.4:+54306818 | MS.gene069717:CDS |
| ACCTTAATTATGATATTTAT+AGG | 0.278702 | 8.4:+54306155 | MS.gene069717:CDS |
| ACCTATAAATATCATAATTA+AGG | 0.297853 | 8.4:-54306156 | None:intergenic |
| CCCCATGAAAATGTTGGATT+TGG | 0.313331 | 8.4:-54306954 | None:intergenic |
| TGGATTCTAGTTCATGTTCA+TGG | 0.337564 | 8.4:+54306982 | MS.gene069717:CDS |
| GAATAAAGAGTATTGAGAAA+TGG | 0.346750 | 8.4:-54305963 | None:intergenic |
| AATAAAGAGTATTGAGAAAT+GGG | 0.349742 | 8.4:-54305962 | None:intergenic |
| GTTTGGATGTATACAGAATA+TGG | 0.351747 | 8.4:+54306712 | MS.gene069717:CDS |
| TTGGTGTTTGAATCTTGATT+TGG | 0.370847 | 8.4:-54305921 | None:intergenic |
| TGTTTATCTTGAGTAGCTAA+TGG | 0.394872 | 8.4:-54306043 | None:intergenic |
| GAAGATGATGAAACCGGTTT+CGG | 0.396965 | 8.4:+54306899 | MS.gene069717:CDS |
| GTTGTTACCACCAGATGGTT+TGG | 0.415329 | 8.4:+54307052 | MS.gene069717:CDS |
| GGAACTTGAGGGGTGTGCCT+AGG | 0.417152 | 8.4:+54306766 | MS.gene069717:CDS |
| TTTGTTTCGTGAGATTGGTT+TGG | 0.421815 | 8.4:+54306695 | MS.gene069717:CDS |
| GAACTTGAGGGGTGTGCCTA+GGG | 0.426698 | 8.4:+54306767 | MS.gene069717:CDS |
| ACCAAATCCAAAACCGAAAC+CGG | 0.442141 | 8.4:-54306912 | None:intergenic |
| CAACCTGTGCAGTGAAACTT+TGG | 0.444081 | 8.4:-54306006 | None:intergenic |
| AATGTTGGATTTGGACTAGC+AGG | 0.451399 | 8.4:-54306945 | None:intergenic |
| TTTCACTGCACAGGTTGCTC+AGG | 0.452221 | 8.4:+54306012 | MS.gene069717:CDS |
| GGGGTGTGCCTAGGGTTCCA+TGG | 0.454206 | 8.4:+54306775 | MS.gene069717:CDS |
| GGGTGTGCCTAGGGTTCCAT+GGG | 0.462556 | 8.4:+54306776 | MS.gene069717:CDS |
| TTGAATCTTGATTTGGATTG+AGG | 0.469278 | 8.4:-54305914 | None:intergenic |
| GAACATGCAGCCAAACCATC+TGG | 0.478212 | 8.4:-54307062 | None:intergenic |
| CAGAGAATGTGATATTGATC+AGG | 0.478427 | 8.4:+54306742 | MS.gene069717:CDS |
| TACCAGTAAATGTGTTCAAA+GGG | 0.481927 | 8.4:-54306623 | None:intergenic |
| AGTCCAAAGTTTCACTGCAC+AGG | 0.485891 | 8.4:+54306003 | MS.gene069717:CDS |
| TCCACAGAAGATGATGAAAC+CGG | 0.487224 | 8.4:+54306893 | MS.gene069717:CDS |
| ATACCAGTAAATGTGTTCAA+AGG | 0.496720 | 8.4:-54306624 | None:intergenic |
| TAAACAGAATCAGCATCAAA+AGG | 0.500362 | 8.4:+54306060 | MS.gene069717:CDS |
| GAAGCTAAAGGTGAATTTCA+AGG | 0.517611 | 8.4:+54306798 | MS.gene069717:CDS |
| GTGAATTTCAAGGTACTTCG+CGG | 0.529074 | 8.4:+54306808 | MS.gene069717:CDS |
| ATCAATATCACATTCTCTGA+AGG | 0.533171 | 8.4:-54306738 | None:intergenic |
| AATTCACCTTTAGCTTCCCA+TGG | 0.534577 | 8.4:-54306792 | None:intergenic |
| TTAGCTTCCCATGGAACCCT+AGG | 0.536034 | 8.4:-54306783 | None:intergenic |
| TATTGATCAGGTGGAACTTG+AGG | 0.540071 | 8.4:+54306754 | MS.gene069717:CDS |
| AAAGGACCCCATGAAAATGT+TGG | 0.541364 | 8.4:-54306960 | None:intergenic |
| ATTGATCAGGTGGAACTTGA+GGG | 0.551874 | 8.4:+54306755 | MS.gene069717:CDS |
| ACCGGTTTCATCATCTTCTG+TGG | 0.561359 | 8.4:-54306894 | None:intergenic |
| AGGGTTCCATGGGAAGCTAA+AGG | 0.578430 | 8.4:+54306786 | MS.gene069717:CDS |
| GAAAGATTGAGATTGCAAAG+AGG | 0.578460 | 8.4:-54305884 | None:intergenic |
| AGGTCTTTAACAAAGATCAA+AGG | 0.587544 | 8.4:-54306136 | None:intergenic |
| AGACAGTTGTTACCACCAGA+TGG | 0.589181 | 8.4:+54307047 | MS.gene069717:CDS |
| GCAGTGAAACTTTGGACTGA+AGG | 0.593412 | 8.4:-54305998 | None:intergenic |
| AGAATGTGATATTGATCAGG+TGG | 0.610163 | 8.4:+54306745 | MS.gene069717:CDS |
| TCAAGCAGTTAAGCACACAT+TGG | 0.624208 | 8.4:+54307016 | MS.gene069717:CDS |
| CTTCGCGGTATAAATTGGAT+CGG | 0.643822 | 8.4:+54306823 | MS.gene069717:CDS |
| GAACATGAACTAGAATCCAA+AGG | 0.647700 | 8.4:-54306978 | None:intergenic |
| TGCTGTTAGAACCCTTCGTG+AGG | 0.651000 | 8.4:+54306108 | MS.gene069717:CDS |
| CGGTATAAATTGGATCGGAA+CGG | 0.651485 | 8.4:+54306828 | MS.gene069717:CDS |
| TTGATCAGGTGGAACTTGAG+GGG | 0.654298 | 8.4:+54306756 | MS.gene069717:CDS |
| CAAAGGCATATCCTCACGAA+GGG | 0.657035 | 8.4:-54306119 | None:intergenic |
| ATGTTGGATTTGGACTAGCA+GGG | 0.662829 | 8.4:-54306944 | None:intergenic |
| TCAAAGGCATATCCTCACGA+AGG | 0.664210 | 8.4:-54306120 | None:intergenic |
| CATGCAGCCAAACCATCTGG+TGG | 0.695452 | 8.4:-54307059 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACCTATAAATATCATAATTA+AGG | - | chr8.4:54306159-54306178 | None:intergenic | 15.0% |
| !! | ACCTTAATTATGATATTTAT+AGG | + | chr8.4:54306155-54306174 | MS.gene069717:CDS | 15.0% |
| !! | GATGATGTAATTAATATTTA+TGG | + | chr8.4:54306304-54306323 | MS.gene069717:intron | 15.0% |
| !!! | AAAAATTGGATTTTTAATGT+TGG | + | chr8.4:54306265-54306284 | MS.gene069717:intron | 15.0% |
| !!! | AAAATTGGATTTTTAATGTT+GGG | + | chr8.4:54306266-54306285 | MS.gene069717:intron | 15.0% |
| !!! | ATAGTTAGAATTTTAATGTT+GGG | + | chr8.4:54306562-54306581 | MS.gene069717:intron | 15.0% |
| !!! | TAAAAAAAGTTAATTTTGAG+TGG | + | chr8.4:54306507-54306526 | MS.gene069717:intron | 15.0% |
| !!! | TATAGTTAGAATTTTAATGT+TGG | + | chr8.4:54306561-54306580 | MS.gene069717:intron | 15.0% |
| !!! | TTGCTTTTCATATAAATATA+TGG | + | chr8.4:54306208-54306227 | MS.gene069717:intron | 15.0% |
| !!! | AATAAAGAGTATTGAGAAAT+GGG | - | chr8.4:54305965-54305984 | None:intergenic | 20.0% |
| !!! | AATTTTGAGTGGAAAAAAAT+TGG | + | chr8.4:54306518-54306537 | MS.gene069717:intron | 20.0% |
| !!! | ATTTCTAGGTGAAAAAAAAT+TGG | + | chr8.4:54306251-54306270 | MS.gene069717:intron | 20.0% |
| !!! | ATTTGAATTGTGTTATTTCT+AGG | + | chr8.4:54306237-54306256 | MS.gene069717:intron | 20.0% |
| !!! | ATTTTGAGTGGAAAAAAATT+GGG | + | chr8.4:54306519-54306538 | MS.gene069717:intron | 20.0% |
| !!! | CTTTTTTTATACATAGAAAG+TGG | - | chr8.4:54306496-54306515 | None:intergenic | 20.0% |
| ! | ATTAATATTTATGGACCCTT+TGG | + | chr8.4:54306313-54306332 | MS.gene069717:intron | 25.0% |
| ! | TTAATTCTGAGTAATCTGTA+AGG | + | chr8.4:54306369-54306388 | MS.gene069717:intron | 25.0% |
| !! | TATAGGTAATTTTCTCATCT+GGG | + | chr8.4:54306172-54306191 | MS.gene069717:intron | 25.0% |
| !! | TTATAGGTAATTTTCTCATC+TGG | + | chr8.4:54306171-54306190 | MS.gene069717:intron | 25.0% |
| !!! | GAATAAAGAGTATTGAGAAA+TGG | - | chr8.4:54305966-54305985 | None:intergenic | 25.0% |
| !!! | TGGGTTTGATAATTTTTTCA+GGG | + | chr8.4:54306581-54306600 | MS.gene069717:intron | 25.0% |
| !!! | TTGGGTTTGATAATTTTTTC+AGG | + | chr8.4:54306580-54306599 | MS.gene069717:intron | 25.0% |
| AAATGTCGATATAGTTAGGT+CGG | + | chr8.4:54306407-54306426 | MS.gene069717:intron | 30.0% | |
| AGGTCTTTAACAAAGATCAA+AGG | - | chr8.4:54306139-54306158 | None:intergenic | 30.0% | |
| ATACCAGTAAATGTGTTCAA+AGG | - | chr8.4:54306627-54306646 | None:intergenic | 30.0% | |
| ATCAATATCACATTCTCTGA+AGG | - | chr8.4:54306741-54306760 | None:intergenic | 30.0% | |
| GTTTGGATGTATACAGAATA+TGG | + | chr8.4:54306712-54306731 | MS.gene069717:CDS | 30.0% | |
| TAAACAGAATCAGCATCAAA+AGG | + | chr8.4:54306060-54306079 | MS.gene069717:CDS | 30.0% | |
| TACCAGTAAATGTGTTCAAA+GGG | - | chr8.4:54306626-54306645 | None:intergenic | 30.0% | |
| TGGTAAATGTCGATATAGTT+AGG | + | chr8.4:54306403-54306422 | MS.gene069717:intron | 30.0% | |
| TGTTTATCTTGAGTAGCTAA+TGG | - | chr8.4:54306046-54306065 | None:intergenic | 30.0% | |
| ! | TCCAAATCCAACATTTTCAT+GGG | + | chr8.4:54306953-54306972 | MS.gene069717:CDS | 30.0% |
| ! | TGGATTTTTAATGTTGGGTT+TGG | + | chr8.4:54306271-54306290 | MS.gene069717:intron | 30.0% |
| ! | TTGGTGTTTGAATCTTGATT+TGG | - | chr8.4:54305924-54305943 | None:intergenic | 30.0% |
| !! | AGAATTTTGTTTCGTGAGAT+TGG | + | chr8.4:54306690-54306709 | MS.gene069717:CDS | 30.0% |
| !! | GATGAGTTTTATCTCAATCT+TGG | + | chr8.4:54306082-54306101 | MS.gene069717:CDS | 30.0% |
| !! | TGTTGGGTTTGGTAATTTTA+AGG | + | chr8.4:54306282-54306301 | MS.gene069717:intron | 30.0% |
| !! | TTGAATCTTGATTTGGATTG+AGG | - | chr8.4:54305917-54305936 | None:intergenic | 30.0% |
| !!! | AGAAGTACAAGTTGATCTTT+TGG | + | chr8.4:54306649-54306668 | MS.gene069717:CDS | 30.0% |
| !!! | GAAGTACAAGTTGATCTTTT+GGG | + | chr8.4:54306650-54306669 | MS.gene069717:CDS | 30.0% |
| ACCAATATATGCACATCCAA+AGG | - | chr8.4:54306332-54306351 | None:intergenic | 35.0% | |
| AGAATGTGATATTGATCAGG+TGG | + | chr8.4:54306745-54306764 | MS.gene069717:CDS | 35.0% | |
| CAGAGAATGTGATATTGATC+AGG | + | chr8.4:54306742-54306761 | MS.gene069717:CDS | 35.0% | |
| CCAATATATGCACATCCAAA+GGG | - | chr8.4:54306331-54306350 | None:intergenic | 35.0% | |
| GAAAGATTGAGATTGCAAAG+AGG | - | chr8.4:54305887-54305906 | None:intergenic | 35.0% | |
| GAACATGAACTAGAATCCAA+AGG | - | chr8.4:54306981-54307000 | None:intergenic | 35.0% | |
| GAAGCTAAAGGTGAATTTCA+AGG | + | chr8.4:54306798-54306817 | MS.gene069717:CDS | 35.0% | |
| ! | CAGGGATGATGTAACATTTT+TGG | + | chr8.4:54306599-54306618 | MS.gene069717:intron | 35.0% |
| ! | CCAAATCCAACATTTTCATG+GGG | + | chr8.4:54306954-54306973 | MS.gene069717:CDS | 35.0% |
| ! | GTCCAAATCCAACATTTTCA+TGG | + | chr8.4:54306952-54306971 | MS.gene069717:CDS | 35.0% |
| ! | TTTGTTTCGTGAGATTGGTT+TGG | + | chr8.4:54306695-54306714 | MS.gene069717:CDS | 35.0% |
| !! | TGGATTCTAGTTCATGTTCA+TGG | + | chr8.4:54306982-54307001 | MS.gene069717:CDS | 35.0% |
| !!! | GTTTTGAAGAAGACAGTGTT+TGG | - | chr8.4:54305943-54305962 | None:intergenic | 35.0% |
| AAAGGACCCCATGAAAATGT+TGG | - | chr8.4:54306963-54306982 | None:intergenic | 40.0% | |
| ACCAAATCCAAAACCGAAAC+CGG | - | chr8.4:54306915-54306934 | None:intergenic | 40.0% | |
| AGGTACTTCGCGGTATAAAT+TGG | + | chr8.4:54306818-54306837 | MS.gene069717:CDS | 40.0% | |
| ATTGATCAGGTGGAACTTGA+GGG | + | chr8.4:54306755-54306774 | MS.gene069717:CDS | 40.0% | |
| CCCCATGAAAATGTTGGATT+TGG | - | chr8.4:54306957-54306976 | None:intergenic | 40.0% | |
| CCCTTTGGATGTGCATATAT+TGG | + | chr8.4:54306328-54306347 | MS.gene069717:intron | 40.0% | |
| CGGTATAAATTGGATCGGAA+CGG | + | chr8.4:54306828-54306847 | MS.gene069717:CDS | 40.0% | |
| CTTCGCGGTATAAATTGGAT+CGG | + | chr8.4:54306823-54306842 | MS.gene069717:CDS | 40.0% | |
| GACCCTTTGAACACATTTAC+TGG | + | chr8.4:54306621-54306640 | MS.gene069717:CDS | 40.0% | |
| TATTGATCAGGTGGAACTTG+AGG | + | chr8.4:54306754-54306773 | MS.gene069717:CDS | 40.0% | |
| TCAAGCAGTTAAGCACACAT+TGG | + | chr8.4:54307016-54307035 | MS.gene069717:CDS | 40.0% | |
| TCCACAGAAGATGATGAAAC+CGG | + | chr8.4:54306893-54306912 | MS.gene069717:CDS | 40.0% | |
| ! | AACATTTTCATGGGGTCCTT+TGG | + | chr8.4:54306962-54306981 | MS.gene069717:CDS | 40.0% |
| ! | AATTCACCTTTAGCTTCCCA+TGG | - | chr8.4:54306795-54306814 | None:intergenic | 40.0% |
| ! | GAAGATGATGAAACCGGTTT+CGG | + | chr8.4:54306899-54306918 | MS.gene069717:CDS | 40.0% |
| ! | GTGAATTTCAAGGTACTTCG+CGG | + | chr8.4:54306808-54306827 | MS.gene069717:CDS | 40.0% |
| !! | AATGTTGGATTTGGACTAGC+AGG | - | chr8.4:54306948-54306967 | None:intergenic | 40.0% |
| !! | AGTTGATCTTTTGGGCATTG+AGG | + | chr8.4:54306658-54306677 | MS.gene069717:CDS | 40.0% |
| !! | ATGTTGGATTTGGACTAGCA+GGG | - | chr8.4:54306947-54306966 | None:intergenic | 40.0% |
| !!! | TTTTGGGCATTGAGGTTTCA+TGG | + | chr8.4:54306666-54306685 | MS.gene069717:CDS | 40.0% |
| AGACAGTTGTTACCACCAGA+TGG | + | chr8.4:54307047-54307066 | MS.gene069717:CDS | 45.0% | |
| AGTCCAAAGTTTCACTGCAC+AGG | + | chr8.4:54306003-54306022 | MS.gene069717:CDS | 45.0% | |
| CAACCTGTGCAGTGAAACTT+TGG | - | chr8.4:54306009-54306028 | None:intergenic | 45.0% | |
| CGACATTTACCAGTTGAGCT+AGG | - | chr8.4:54306395-54306414 | None:intergenic | 45.0% | |
| GCAGTGAAACTTTGGACTGA+AGG | - | chr8.4:54306001-54306020 | None:intergenic | 45.0% | |
| GTTGTTACCACCAGATGGTT+TGG | + | chr8.4:54307052-54307071 | MS.gene069717:CDS | 45.0% | |
| TTGATCAGGTGGAACTTGAG+GGG | + | chr8.4:54306756-54306775 | MS.gene069717:CDS | 45.0% | |
| ! | ACCGGTTTCATCATCTTCTG+TGG | - | chr8.4:54306897-54306916 | None:intergenic | 45.0% |
| ! | CAAAGGCATATCCTCACGAA+GGG | - | chr8.4:54306122-54306141 | None:intergenic | 45.0% |
| ! | TCAAAGGCATATCCTCACGA+AGG | - | chr8.4:54306123-54306142 | None:intergenic | 45.0% |
| !! | GATGAAACCGGTTTCGGTTT+TGG | + | chr8.4:54306905-54306924 | MS.gene069717:CDS | 45.0% |
| !!! | ACCGGTTTCGGTTTTGGATT+TGG | + | chr8.4:54306911-54306930 | MS.gene069717:CDS | 45.0% |
| AGGGTTCCATGGGAAGCTAA+AGG | + | chr8.4:54306786-54306805 | MS.gene069717:CDS | 50.0% | |
| AGTCGTTCGAACCCAGGTTA+AGG | - | chr8.4:54306436-54306455 | None:intergenic | 50.0% | |
| GAACATGCAGCCAAACCATC+TGG | - | chr8.4:54307065-54307084 | None:intergenic | 50.0% | |
| TAGGTCGGACACCTTAACCT+GGG | + | chr8.4:54306422-54306441 | MS.gene069717:intron | 50.0% | |
| TCTGTAAGGCCTAGCTCAAC+TGG | + | chr8.4:54306383-54306402 | MS.gene069717:intron | 50.0% | |
| TGCTGTTAGAACCCTTCGTG+AGG | + | chr8.4:54306108-54306127 | MS.gene069717:CDS | 50.0% | |
| TTAGCTTCCCATGGAACCCT+AGG | - | chr8.4:54306786-54306805 | None:intergenic | 50.0% | |
| TTAGGTCGGACACCTTAACC+TGG | + | chr8.4:54306421-54306440 | MS.gene069717:intron | 50.0% | |
| TTTCACTGCACAGGTTGCTC+AGG | + | chr8.4:54306012-54306031 | MS.gene069717:CDS | 50.0% | |
| CATGCAGCCAAACCATCTGG+TGG | - | chr8.4:54307062-54307081 | None:intergenic | 55.0% | |
| TCGAACGACTCGCAGTCAAG+TGG | + | chr8.4:54306446-54306465 | MS.gene069717:intron | 55.0% | |
| ! | GAACTTGAGGGGTGTGCCTA+GGG | + | chr8.4:54306767-54306786 | MS.gene069717:CDS | 55.0% |
| ACTGCGAGTCGTTCGAACCC+AGG | - | chr8.4:54306442-54306461 | None:intergenic | 60.0% | |
| GGGTGTGCCTAGGGTTCCAT+GGG | + | chr8.4:54306776-54306795 | MS.gene069717:CDS | 60.0% | |
| ! | GGAACTTGAGGGGTGTGCCT+AGG | + | chr8.4:54306766-54306785 | MS.gene069717:CDS | 60.0% |
| GGGGTGTGCCTAGGGTTCCA+TGG | + | chr8.4:54306775-54306794 | MS.gene069717:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 54305875 | 54307088 | 54305875 | ID=MS.gene069717 |
| chr8.4 | mRNA | 54305875 | 54307088 | 54305875 | ID=MS.gene069717.t1;Parent=MS.gene069717 |
| chr8.4 | exon | 54305875 | 54306176 | 54305875 | ID=MS.gene069717.t1.exon1;Parent=MS.gene069717.t1 |
| chr8.4 | CDS | 54305875 | 54306176 | 54305875 | ID=cds.MS.gene069717.t1;Parent=MS.gene069717.t1 |
| chr8.4 | exon | 54306602 | 54307088 | 54306602 | ID=MS.gene069717.t1.exon2;Parent=MS.gene069717.t1 |
| chr8.4 | CDS | 54306602 | 54307088 | 54306602 | ID=cds.MS.gene069717.t1;Parent=MS.gene069717.t1 |
| Gene Sequence |
| Protein sequence |
