AlfalfaGEDB | MS.gene74803

M. sativa cultivar XinJiangDaYe / MS.gene74803

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF08263.15 PF12799.10 PF13855.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74803.t1	RHN50966.1	82.3	1064	151	3	9	1067	71	1102	0.00E+00	1086.6

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74803.t1	Q6JN46	40.0	1076	509	20	15	1067	23	984	1.2e-38	163.7

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74803.t1	A0A396HCL7	82.3	1064	151	3	9	1067	71	1102	0.0e+00	1086.6

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049356	MS.gene74803	0.801186	1.01E-48	-1.69E-46
MS.gene049488	MS.gene74803	0.813302	2.74E-51	-1.69E-46
MS.gene050122	MS.gene74803	0.8037	3.08E-49	-1.69E-46
MS.gene050426	MS.gene74803	-0.830763	2.44E-55	-1.69E-46
MS.gene050640	MS.gene74803	0.806077	9.80E-50	-1.69E-46
MS.gene050670	MS.gene74803	0.864584	1.10E-64	-1.69E-46
MS.gene05105	MS.gene74803	0.803075	4.14E-49	-1.69E-46
MS.gene051525	MS.gene74803	0.875459	3.03E-68	-1.69E-46
MS.gene051568	MS.gene74803	0.827202	1.78E-54	-1.69E-46
MS.gene051582	MS.gene74803	0.810148	1.33E-50	-1.69E-46

Showing 1 to 10 of 98 entries

Previous1 2 3 4 5…10Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74803.t1	MTR_6g034470	86.615	1031	131	3	9	1034	20	1048	0.0	1668
MS.gene74803.t1	MTR_6g034410	86.391	1014	111	3	9	1017	20	1011	0.0	1608
MS.gene74803.t1	MTR_6g034380	86.282	780	86	1	9	788	20	778	0.0	1214
MS.gene74803.t1	MTR_6g034380	28.373	504	295	13	518	982	302	778	1.44e-24	111
MS.gene74803.t1	MTR_6g034380	26.147	654	368	22	445	992	96	740	2.27e-16	84.7
MS.gene74803.t1	MTR_6g034380	25.853	557	314	16	380	872	268	789	2.96e-16	84.3
MS.gene74803.t1	MTR_6g034450	62.943	931	191	9	164	1087	12	795	0.0	1018
MS.gene74803.t1	MTR_6g034450	24.211	665	373	21	107	750	141	695	3.36e-13	74.7
MS.gene74803.t1	MTR_6g034450	37.681	138	68	4	98	220	562	696	5.66e-12	70.5
MS.gene74803.t1	MTR_5g047390	50.794	1071	440	12	9	1067	20	1015	0.0	954

Showing 1 to 10 of 1,733 entries

Previous1 2 3 4 5…174Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74803.t1	AT2G34930	34.051	743	371	21	362	1023	199	903	1.58e-98	333
MS.gene74803.t1	AT2G34930	28.587	913	507	31	22	851	28	878	1.65e-55	209
MS.gene74803.t1	AT1G74190	29.376	817	407	19	413	1068	134	941	6.37e-70	253
MS.gene74803.t1	AT1G74190	28.866	873	489	34	27	798	27	868	5.66e-47	183
MS.gene74803.t1	AT1G74190	29.125	594	328	19	439	992	105	645	3.91e-32	135
MS.gene74803.t1	AT1G58190	28.877	935	497	29	282	1073	100	1009	1.57e-68	250
MS.gene74803.t1	AT4G04220	32.468	693	400	21	358	1020	106	760	8.45e-68	244
MS.gene74803.t1	AT4G04220	27.617	793	410	30	20	726	17	731	1.84e-36	149
MS.gene74803.t1	AT4G04220	28.342	561	316	23	96	612	220	738	5.37e-19	93.6
MS.gene74803.t1	AT4G04220	26.866	335	169	8	732	992	104	436	9.38e-18	89.4

Showing 1 to 10 of 1,209 entries

Previous1 2 3 4 5…121Next

Find 200 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTGGAGGGTAATGCTT+TGG	0.387983	6.3:-25710263	MS.gene74803:CDS
AAAGAGATTGGATATTTGGT+TGG	0.479311	6.3:-25709134	MS.gene74803:CDS
AAAGGAGGAACCCAACTAAG+GGG	0.676979	6.3:+25710154	None:intergenic
AAAGTGGCCAAGTTTGTTGT+TGG	0.507674	6.3:+25709776	None:intergenic
AAATATGTTAATTTGAAAGG+AGG	0.558503	6.3:+25710139	None:intergenic
AAATGCACCAACAACAAACT+TGG	0.502874	6.3:-25709783	MS.gene74803:CDS
AAATTTAATGTTGTTAGATG+TGG	0.519574	6.3:-25709552	MS.gene74803:CDS
AACATACCTTTATTCTGGAA+AGG	0.515459	6.3:-25709239	MS.gene74803:CDS
AACTACGATATTGTCCGCTC+AGG	0.470728	6.3:+25711124	None:intergenic
AACTGCGGCTACCTGGAAAT+TGG	0.226314	6.3:+25710779	None:intergenic

Showing 1 to 10 of 200 entries

Previous1 2 3 4 5…20Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAGATTGGATATTTGGT+TGG	-	chr6.3:25711835-25711854	MS.gene74803:CDS	30.0%
AATCATGATAAGATAGCAAC+TGG	-	chr6.3:25708824-25708843	MS.gene74803:CDS	30.0%
AATTCAAATCAATTTGAGGG+TGG	-	chr6.3:25711079-25711098	MS.gene74803:CDS	30.0%
ACATATTTGAGGAAAGATCA+AGG	+	chr6.3:25710322-25710341	None:intergenic	30.0%
ACCAAAAGAGATTGGATATT+TGG	-	chr6.3:25711831-25711850	MS.gene74803:CDS	30.0%
AGCTTGATCAACAAAAATTC+AGG	-	chr6.3:25710584-25710603	MS.gene74803:CDS	30.0%
AGTTTAAGAGTTTGCAAAAC+GGG	+	chr6.3:25709753-25709772	None:intergenic	30.0%
ATATGAAGCTTGTAGCAAAA+AGG	+	chr6.3:25711113-25711132	None:intergenic	30.0%
ATTTCTGCAATTCTTCAAAG+TGG	+	chr6.3:25711401-25711420	None:intergenic	30.0%
CAAAGCTTCCAATTTAACAA+GGG	+	chr6.3:25711341-25711360	None:intergenic	30.0%

Showing 1 to 10 of 256 entries

Previous1 2 3 4 5…26Next

Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	25708647	25712344	25708647	ID=MS.gene74803
chr6.3	mRNA	25708647	25712344	25708647	ID=MS.gene74803.t1;Parent=MS.gene74803
chr6.3	exon	25712317	25712344	25712317	ID=MS.gene74803.t1.exon1;Parent=MS.gene74803.t1
chr6.3	CDS	25712317	25712344	25712317	ID=cds.MS.gene74803.t1;Parent=MS.gene74803.t1
chr6.3	exon	25708647	25711888	25708647	ID=MS.gene74803.t1.exon2;Parent=MS.gene74803.t1
chr6.3	CDS	25708647	25711888	25708647	ID=cds.MS.gene74803.t1;Parent=MS.gene74803.t1

Gene Sequence

>MS.gene74803

ATGTCCGATTTTCTAACTTGCTTTGCGGGTAGAAATTATTTTGATTTTATGTTTGTCATACATATATTTTCTAACTTGCTTTACGGGTAGAAATTATTTTGATTATATGTTGGTCATACATATAATTTCTAACTAGCTTTGTAGGGTAGAAATTAATATCCACACAAGTCAATTTAAAATCATGATAAGATAGCAACTGGACGTGTATCACATGGTCCTTTTTCTTTTGGTTTTTTTTTTTTGGTAGTGCCTTTTTCTTTTGGTAGTGCCTCTTTTGGTCAGGGGAAAGAGACATCCACTCCTTATTGCAATCAATCTATATAAATCTATTGCATGAGTTTTTATACTTCACAACTAAAAAGAAAAGCTTTAACAAAATATTTAACAGAAGCAAAATGAGCAATTATATTCTCAAAATATTTTATGTATTGCAATTGCTTTTATTGCTTACCTCAGGATCCACTCATGAGTTCAAAAATACTACAATTGAAAGTGTAGAATCAAAGTGCATAGAGAGGGAGAAACAAGCACTCCTCAAGTTCAAACAAAGCATCGTTGACGACTTTTACATGCTGTCTACATGGAAGGATGATAACAAAGATGGAGACTGCTGCAAATGGAAAAGAATTGAGTGCAACAATGAAACAGGTCATGTGAAGAAACTTGATCTTCGTGGTGCTGATACACAATTCTTGGTAGGTTCAATTGATTTCACTTCGTTGATTGTCTTGCAAAATATGGAATATTTGGATCTTAGCTATAATTCATTTCATGACAATTATATTTCAGAAAACATAGGCTCACTTACCAAGTTAAAGTATCTCAATTTATCATATTCTTCTGTTGGTGGGAGGATTCCTTATCAAATTGGAAAACTTTTAGAGCTTGAATATCTAGATCTAAGTGAGATGTATTATGGTACAAAAGGAGAAATCCCTTCTCAACTCGGGAATCTTACACGTTTACGATATCTCAATCTAAGAGATAACGAAAATATTGTTGGAGAAATCCCTTGTCAACTTAGAAATCTCTCCCAACTGCAGTACCTTGATCTTGAAGGAACTTCTCTTTCTGGAGAAATCCCTTTTCAACCAGGGAATCTTCCCGTTTTGCAAACTCTTAAACTTGATGTGTATTTTGATCTCACATATGATAATATAAAGTGGTTGTCTACACTCTCTTCTTTAACAAGTCTTTCCCTGAGCGGACAATATCGTAGTTTTGTCTCTTTTCACTACTTGCTGCAATACAACATGAAGTTTATTCGAAACTTAAGAGAGTTGAGGTTAGTTGATTTTGGTCTTATAGATACTAATGTTGCGTCTTTGTTTCATTCTCATTCTAACTTTTCCAATTCTCTTACCATCCTTGATCTCTCTGACAATATGTTGACATCATCAACGTTTCAATTCTTATCAAATATTAGTATTAATCTTCAAGAGCTTCGTCTTTCTCATAACAATATTGTTTTATCATCTCATCACTATCCAAACTTTCCTTCTCTTGTCATCCTTGAACTCTCATATAATAATATTTCATCATCCCAATTTCCAGGTAGCCGCAGTTTTAGCTCCAAATTGCAAGAGCTTTATCTAGCAAATTGCATGCTTACAGATAAAAGTTTTCTTGTGCCATCTACTTCAGTTGTGAACTCTTCATCTTCCCTTCTCATCCTTGATCTTTCCTCAAATATGTTGAGATCATCAGAAATATTTTTATGGGCTTTTAACTTTACCACTAGTGTTCATAGCCTTTACCTCGATGGTAACTTGTTAGAAGGTCCCATTCCAGATGGATTTGAGAAAGTGATGAATTCTCTTGAATATCTTTCACTCTCAGGAAACAATTTACAAGGAGATATTCCATCTTTCTTTAGTAACATGTGCACATTGCATACTTTATACCTATCAAATAACAACTTGAGTGGTGAAATTTCTAGCTTGATCAACAAAAATTCAGGGTGCAATAGACACATATTTACAGATTTGGATTTATCTCATAATAGAATAACGGGCGCGCTACCTGAATGCATCAACTTGCTATCCGAGTTGGAGTATCTAAACTTGGAGGGTAATGCTTTGGAAGGTGAAATCAATGAATTACATCTCACCAATTTTTCCAAATTGAAAGCATTATCCTTATCATACAACTCATTATCCCTTAAGTTTCCCCTTAGTTGGGTTCCTCCTTTCAAATTAACATATTTGAACTTGGCATCTTGCAAGTTAGGTTCAAGCTTTCCAAGTTGGCTCCAAACACAGAGATCCATAATGCAACTTGATATTTCTGATACAGGGCTTAATGATGGTGTACCCGAATGGTTTTGGAACAACTCGCAAAATATGAGATTAATGAATATGTCGCACAACAATCTAATCGGTACAATTCCAGATTTTCCATATAAGCTTCGTCAAAGATCGTCTGTATATTTGAATTCAAATCAATTTGAGGGTGGAGTTCCTTCCTTTTTGCTACAAGCTTCATATCTTATGCTCTCCGAAAATAAATTTTCGCATTTGATTTCATTTGTATGTGATAAAAATGCACCAACAACAAACTTGGCCACTTTAGATTTATCAAACAATCAAATAGAGGGACAGCTTCCTAATTGTTGGAATTCTGTAAACACATTATTGTTTCTTGATTTGACAAACAATAAGCTTTGGGGGAAGATTCCACAGTCCATGGGAACCCTTGTTAAATTGGAAGCTTTGGTTTTAAGAAATAATAGTTTGAATGGTGACTTGCCTTCCACTTTGAAGAATTGCAGAAATTTAATGTTGTTAGATGTGGGTGAAAATTTGTTGTCTGGCTCAATTCCAACATGGATAGGAGAAAACATGCAGCAATTGATAATCTTGAGCATGAAAGGGAATCACTTCTCTGGAAACATTCCTATCCACCTCTGTTTTTTAAGGAAGATTCAATTTTTGGATCTTTCAAGAAATAAATTATCAGAAGGAATTCCAACATGCTTAGAGAATTTTACATCATTGTATGAAAAGAGCATCAATACTAGTGAAACTGAAAGTCAAATATATTCGACAAGTCAAGGCTACTTTTACTATGGTTATTATACATTTAACATACCTTTATTCTGGAAAGGTATGGAACGTGGGTTCAAGCATCCAGAGATGCGTCTTAAGGGCATTGATCTTTCAAGTAATAACTTAACAGGTGAAATACCAAAAGAGATTGGATATTTGGTTGGATTAGTCGCTTTGAATTTATCAAGAAACAATTTGAGAGGAGAAATCCCATTTGAAATTGGAAATTTAGTTTCACTTGATTTCCTCGACTTGTCAAGAAACCATTTCTTTGGTAAAATTCCTTCCACTCTTTCCAACATCGACCGGCTGGAAATTTTAGACTTGTCAAACAACTCTCTCTCTGGAAGAATCCCTTTTGGCAGACAATTGCAAACCTTAGATCCCTCAGGTTTTGAAGGAAATCTTGATCTTTGTGGTGAACCACTTGAAAACAAATGTCCCGAAGACGCGACAACAGTAAATCCTCAAGGGTCAGAAATTCATGGTGAAGATGACAATTCTGTTTTCCATGAAGGATTTTACATGTGCATGGGGTTAGGCTATTTCACAGGTTTTTGGGGATTATTAGGGCCAATACTATATATATGTATTGGTAGCTGTCAATGTGACAAGGTTCCAAATGTGGCTCAAAGACTAGAAGGTACATAG

Protein sequence

>MS.gene74803.t1

MSDFLTCFAGSTHEFKNTTIESVESKCIEREKQALLKFKQSIVDDFYMLSTWKDDNKDGDCCKWKRIECNNETGHVKKLDLRGADTQFLVGSIDFTSLIVLQNMEYLDLSYNSFHDNYISENIGSLTKLKYLNLSYSSVGGRIPYQIGKLLELEYLDLSEMYYGTKGEIPSQLGNLTRLRYLNLRDNENIVGEIPCQLRNLSQLQYLDLEGTSLSGEIPFQPGNLPVLQTLKLDVYFDLTYDNIKWLSTLSSLTSLSLSGQYRSFVSFHYLLQYNMKFIRNLRELRLVDFGLIDTNVASLFHSHSNFSNSLTILDLSDNMLTSSTFQFLSNISINLQELRLSHNNIVLSSHHYPNFPSLVILELSYNNISSSQFPGSRSFSSKLQELYLANCMLTDKSFLVPSTSVVNSSSSLLILDLSSNMLRSSEIFLWAFNFTTSVHSLYLDGNLLEGPIPDGFEKVMNSLEYLSLSGNNLQGDIPSFFSNMCTLHTLYLSNNNLSGEISSLINKNSGCNRHIFTDLDLSHNRITGALPECINLLSELEYLNLEGNALEGEINELHLTNFSKLKALSLSYNSLSLKFPLSWVPPFKLTYLNLASCKLGSSFPSWLQTQRSIMQLDISDTGLNDGVPEWFWNNSQNMRLMNMSHNNLIGTIPDFPYKLRQRSSVYLNSNQFEGGVPSFLLQASYLMLSENKFSHLISFVCDKNAPTTNLATLDLSNNQIEGQLPNCWNSVNTLLFLDLTNNKLWGKIPQSMGTLVKLEALVLRNNSLNGDLPSTLKNCRNLMLLDVGENLLSGSIPTWIGENMQQLIILSMKGNHFSGNIPIHLCFLRKIQFLDLSRNKLSEGIPTCLENFTSLYEKSINTSETESQIYSTSQGYFYYGYYTFNIPLFWKGMERGFKHPEMRLKGIDLSSNNLTGEIPKEIGYLVGLVALNLSRNNLRGEIPFEIGNLVSLDFLDLSRNHFFGKIPSTLSNIDRLEILDLSNNSLSGRIPFGRQLQTLDPSGFEGNLDLCGEPLENKCPEDATTVNPQGSEIHGEDDNSVFHEGFYMCMGLGYFTGFWGLLGPILYICIGSCQCDKVPNVAQRLEGT