AlfalfaGEDB | MS.gene75014

M. sativa cultivar XinJiangDaYe / MS.gene75014

KEGG: K05391
GO: GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0022803 GO:0022832 GO:0022836 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0110165
PFAM: PF00027.32 PF00520.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75014.t1	XP_003590482.1	98.5	710	11	0	1	710	1	710	0.00E+00	1405.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75014.t1	G7IBJ4	98.5	710	11	0	1	710	1	710	0.0e+00	1405.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75014.t1	A0A396JNB2	98.7	683	9	0	28	710	1	683	0.0e+00	1360.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049356	MS.gene75014	0.882776	7.84E-71	-1.69E-46
MS.gene049369	MS.gene75014	0.864521	1.15E-64	-1.69E-46
MS.gene049396	MS.gene75014	0.853262	2.68E-61	-1.69E-46
MS.gene049488	MS.gene75014	0.805362	1.38E-49	-1.69E-46
MS.gene049609	MS.gene75014	0.816002	6.92E-52	-1.69E-46
MS.gene049805	MS.gene75014	0.814206	1.73E-51	-1.69E-46
MS.gene050122	MS.gene75014	0.82453	7.68E-54	-1.69E-46
MS.gene050499	MS.gene75014	0.824909	6.25E-54	-1.69E-46
MS.gene050502	MS.gene75014	0.817191	3.75E-52	-1.69E-46
MS.gene050520	MS.gene75014	0.836255	1.04E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene75014.t1	MTR_1g064240	98.451	710	11	0	1	710	1	710	1457
MS.gene75014.t1	MTR_2g094860	60.311	708	264	5	7	708	7	703	898
MS.gene75014.t1	MTR_4g058730	68.128	593	185	2	41	629	25	617	862
MS.gene75014.t1	MTR_2g460590	53.985	665	289	6	58	710	30	689	741
MS.gene75014.t1	MTR_3g109030	53.284	670	292	7	58	709	60	726	721
MS.gene75014.t1	MTR_4g130820	51.652	666	301	10	51	709	78	729	693
MS.gene75014.t1	MTR_7g034605	49.273	688	312	7	46	708	5	680	692
MS.gene75014.t1	MTR_1g028370	50.143	700	313	10	18	709	44	715	686
MS.gene75014.t1	MTR_3g091080	51.271	669	300	10	48	709	63	712	681
MS.gene75014.t1	MTR_3g088875	50.307	652	308	4	71	706	36	687	676

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene75014.t1	AT2G28260	60.028	703	251	2	6	708	6	678	874
MS.gene75014.t1	AT2G28260	62.557	657	219	1	52	708	9	638	868
MS.gene75014.t1	AT2G24610	50.899	723	330	10	8	709	8	726	715
MS.gene75014.t1	AT2G24610	50.763	721	330	9	10	709	25	741	712
MS.gene75014.t1	AT4G30360	52.154	650	300	5	71	710	71	719	706
MS.gene75014.t1	AT2G23980	49.711	692	333	8	29	709	59	746	696
MS.gene75014.t1	AT2G23980	49.711	692	333	8	29	709	59	746	696
MS.gene75014.t1	AT2G23980	49.711	692	333	8	29	709	32	719	696
MS.gene75014.t1	AT2G23980	49.711	692	333	8	29	709	59	746	696
MS.gene75014.t1	AT2G23980	49.711	692	333	8	29	709	59	746	696

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Find 128 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAGTTCTACCACCGT+TGG	0.651859	1.4:-52699885	None:intergenic
AAACCAACTCTATGCACTCC+AGG	0.588925	1.4:+52699785	MS.gene75014:CDS
AAATGAGTGCATATGAGATG+AGG	0.698871	1.4:+52696917	MS.gene75014:CDS
AAATGCTTCGACTTCTGTGA+TGG	0.558128	1.4:-52700020	None:intergenic
AAATTTATTCTAGGTCCTCT+AGG	0.441726	1.4:-52697051	None:intergenic
AACACCTGCAGAATAAGCTC+AGG	0.570561	1.4:+52699911	MS.gene75014:CDS
AACAGTCACTTCTTTCAGTT+TGG	0.303420	1.4:+52698478	MS.gene75014:CDS
AAGCCATCATCAAATGGAAG+AGG	0.574296	1.4:+52696973	MS.gene75014:CDS
AAGTGTATTGATATGTCAAT+TGG	0.485639	1.4:+52697159	MS.gene75014:CDS
AATTTATTCTAGGTCCTCTA+GGG	0.546116	1.4:-52697050	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTTATTCTAGGTCCTCT+AGG	-	chr1.4:52697054-52697073	None:intergenic	30.0%
AAGCTATCCTATAGAACTTA+CGG	-	chr1.4:52698144-52698163	None:intergenic	30.0%
AATTTATTCTAGGTCCTCTA+GGG	-	chr1.4:52697053-52697072	None:intergenic	30.0%
ACTGGTAAGTAAAAGAAAAG+TGG	-	chr1.4:52697126-52697145	None:intergenic	30.0%
AGATAATGATATTGGCAATG+TGG	-	chr1.4:52698382-52698401	None:intergenic	30.0%
ATAAACAAGCCATCATCAAA+TGG	+	chr1.4:52696967-52696986	MS.gene75014:CDS	30.0%
ATAATGCTAGGTACTCATTT+GGG	+	chr1.4:52697727-52697746	MS.gene75014:intron	30.0%
CTGATGTGAATAGAATCTAA+AGG	-	chr1.4:52700119-52700138	None:intergenic	30.0%
CTTAAATCAAGCAATCTATC+AGG	+	chr1.4:52698442-52698461	MS.gene75014:CDS	30.0%
CTTATTTCCGTAAGTTCTAT+AGG	+	chr1.4:52698134-52698153	MS.gene75014:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	52696578	52700447	52696578	ID=MS.gene75014
chr1.4	mRNA	52696578	52700447	52696578	ID=MS.gene75014.t1;Parent=MS.gene75014
chr1.4	exon	52696578	52696606	52696578	ID=MS.gene75014.t1.exon1;Parent=MS.gene75014.t1
chr1.4	CDS	52696578	52696606	52696578	ID=cds.MS.gene75014.t1;Parent=MS.gene75014.t1
chr1.4	exon	52696861	52697389	52696861	ID=MS.gene75014.t1.exon2;Parent=MS.gene75014.t1
chr1.4	CDS	52696861	52697389	52696861	ID=cds.MS.gene75014.t1;Parent=MS.gene75014.t1
chr1.4	exon	52697737	52697949	52697737	ID=MS.gene75014.t1.exon3;Parent=MS.gene75014.t1
chr1.4	CDS	52697737	52697949	52697737	ID=cds.MS.gene75014.t1;Parent=MS.gene75014.t1
chr1.4	exon	52698301	52698593	52698301	ID=MS.gene75014.t1.exon4;Parent=MS.gene75014.t1
chr1.4	CDS	52698301	52698593	52698301	ID=cds.MS.gene75014.t1;Parent=MS.gene75014.t1
chr1.4	exon	52698689	52698800	52698689	ID=MS.gene75014.t1.exon5;Parent=MS.gene75014.t1
chr1.4	CDS	52698689	52698800	52698689	ID=cds.MS.gene75014.t1;Parent=MS.gene75014.t1
chr1.4	exon	52699069	52699305	52699069	ID=MS.gene75014.t1.exon6;Parent=MS.gene75014.t1
chr1.4	CDS	52699069	52699305	52699069	ID=cds.MS.gene75014.t1;Parent=MS.gene75014.t1
chr1.4	exon	52699728	52700447	52699728	ID=MS.gene75014.t1.exon7;Parent=MS.gene75014.t1
chr1.4	CDS	52699728	52700447	52699728	ID=cds.MS.gene75014.t1;Parent=MS.gene75014.t1

Gene Sequence

>MS.gene75014

ATGGCTTCTGTTATATCAAGAGTCGTAAGGTTTGCATAATCTTCCCTTTAACATTGTAATTAATATGACTTATCAACTTAAGAAATTATATTTCTATTGTACTATATCGTTATTTTCAACTTCGTTTATTTATTTCTAATCCCGAAGAAGTAGCCTAGTGGTATGAGTTGATACATCGAATGAGTTCTATCTAGTAGGTCTAGGGTTTGATCGTTACTACTAACAATTTCTTTTTTTACAAAAATATGTTTGGTGCTAAAATTCAGTGTTATTGTGAACTCAGGTTTCATGATGATCTTGAAAAAGAGAAATTACAAGAAGGTGAAGAAAGTCAAATGGAAATGAGTGCATATGAGATGAGGAGTGAATACAAGCATGGAAAAGATGCAATAAACAAGCCATCATCAAATGGAAGAGGACTTTCAAGAGTTTTTTCTGAAGATTATGACGCAGGAGAGATTTTAGTATTCGACCCTAGAGGACCTAGAATAAATTTATGGAACAAAATATTCTTAGCAGCTTGTTTGATTTCATTGTTTGTGGATCCACTTTTCTTTTACTTACCAGTTGCTAAGAAAGAAAAGTGTATTGATATGTCAATTGGTCTTGAAGTTTCACTTACTATAATTAGAACATTTGTTGATGCATTTTACATTATTCATATCTATATTAGGTTTCAAACTGCTTATATTGCTCCTTCATCTCGTGTTTCTGGTCGAGGAGAACTCATTATTGATTCCTCAAAGATTGCATCAAACTACATGAAAAAGGAATTTTGGTCTGATCTTGTTGCAGCACTACCACTTCCTCAGGTATATTCCTGATATTCATTTTTAATTATCAGTATAAATCACTTCATCCTCCAAGGGCTTCATCACATGTGGTTTTCTACACTTCTATCTTTACTTATAGTAAACCAGCCAAAGAATGTCGCAATAATGCCTACATGGCTAACAATTCATTGAAGAAATAGTGAAAATGTTTTAAAACTCCCGTAAAGTGTGAGCGAGTACAAAATATGTTTAAATGTTCTGTGTTGGTTTGTAGGGACAGTCACAAATCCTGAAAGAATGTATTAGCCGTTCTTCGCATAATTAAAATATGAATTTTATGGTTTGCAAACATGGCTAACAATTTGATAATTCATATATAATGCTAGGTACTCATTTGGGCTGTAATTCCAAATATAAAAGGGTCAGAAATGATTGCATCAAGGCATGTAGTTCGCCTGGTGTCCATTTTCCAGTACTTATTGAGGTTGTATCTTATTTATCCTCTATCATCTAAGATAACCAAGGCAAGTGGAGTAATGATGGAAAAAGCTTGGGCTGGTGCAGCTTATTATTTAACACTCTATATGCTTGCAAGTCATGTAAGTCACTCTTCCGAAAAATGTTTTTCGTAATACTTGCGATCAAAATGGACTTATGTGAGCGTACGTACTAGTATGAGCATTTGTGATACTGTTTGAGGTAACTTATTTGAGCTTATTTACTAACATAAGTATTTTTGCAGACTTTATAAAAACTTATAACATGTCCATAAATTGTTTTTAGCTTATTTCCGTAAGTTCTATAGGATAGCTTATGAAAACAGCTTAGAATTAGATGAAAACAATTTGATTTTAATAGTGTATACATAATCACTTAGATGATACACGCTTATGCTATACGCACTTCCTTGCTTCTGATTCATTTCTTAACCTTTTCTTTATTTCAAAAAGGTTTTAGGATCAACTTGGTACCTGTTATCAATTGAAAGACAAGATGAATGTTGGAAGAAAGCATGTACACTTCAATATCCACATTGCCAATATCATTATCTTGATTGTCGAAGCTTAAGTGATCCAAATAGGAATGCTTGGCTTAAATCAAGCAATCTATCAGGTCTATGTGATCAGAACAGTCACTTCTTTCAGTTTGGAATTTTTGATGATGCTGTGACTTTGGAAATAACTAGCTCAAACTTCTTAACCAAGTATTATTATTGTCTTTGGTGGGGATTGAGGAATCTAAGGTAACTCAAATTTTGGATGAAAAAAGTTTGATAATTTCTTGAAGTAAAAGTTTTGTCCATATTTATTCTAACCAATTCTTATGATGAATTTGCAGCTCTTCAGGAGAGAATCTCTTAACTAGTACACATGTTGCAGAGATAAATTTTGCTGTGATTGTTGCAATTCTTGGATTGGTGCTTTTTGCACTGCTCATAGGAAATATGCAAGTATGTATAGCGATTATCAGTTTATTAATGTGTCATGATCGTTTTCCGTGATATATGTATGTCCTGCTTAGATAAACGGTATACTTAAATGTTTATTGAATAAATATTAATCATATAAGTGCTTGCATAAGCAATTTCTACAACAAAAGATAAAGCAGCTTAAGCTATACTAGAGAGGTTATGAAAATAAAACAACTTATGGACATGTCACAAACTGCTTTCATAAGCTCTCCCAAACACGCCGTTACATTATTTCTTTTATTGACAGACGTACCTTCAATCGACCACTATACGGCTGGAAGAGTGGCGAATAAGAAGGACAGATACAGAAAGATGGATGCATCACCGGCAGCTCCCTCGTTACCTGAAGGAAAATGTTCGACGCCATGACCAATTTAGATGGGTAGCTACTCGTGGAGTTGACGAGGAAGCAATTCTTAGAGATCTTCCTGTTGATCTAAGACGTGACATTAAACGCCACCTTTGCCTTAATCTAGTTAGACAAGTAAGTAAATCTTTGTTTTCATCTCTGCATCTGTATTTGCTTTTTATTACACAGATTATGGATTAAACGACTTAGATTACACATTCACTAATTTAGATTAGACGGATCTGCTGGGAATCTGTTTCCGCTCTACTTTACGTGCAAATAAGATTTTAACTTCTAAATCAGTAACAATTGTGGTCTCAATCACTGATATTCCAGAAATTCATTCATGGTCAAGTTTGACCAATGCGATCTCAATTTTGGTCGCATAAATGTGATCATTGATAAATAAAAAATCTTGATGTCTCCACTCTTAATCAAATAATTTTTCTTAAGAAACCATGTGTGTGACACTTTTTTTTCTTTTTTTGTTGATATGTTGCTTGAGAAACAAGTAAACAAATTAAGAATGAAGTACTAATTGGACACTAATTGCACAGGTACCACTATTTGATCAGATGGATGACAGGATGTTAGATGCAATATGTGAAAGGCTAAAACCAACTCTATGCACTCCAGGAACTTGCATAGTTCGCGAAGGCGACCCTGTCGACGAAATGCTCTTCATCGTTCGAGGACGTTTAGATTCTTGCACGACCAACGGTGGTAGAACTGGTTTTTTCAACACCTGCAGAATAAGCTCAGGCGACTTCTGCGGTGAAGAGCTTTTACCATGGGCCTTAGACCCTCGCCCGACTGCTGTGTTTCCTTCATCAACTCGCACAGTGAGAGCCATCACAGAAGTCGAAGCATTTGCACTCATTGCCGAGGATTTAAAGTTTGTAGCAGCACAATTCCGCCGGTTACATAGCAAACAACTGAGACAAACCTTTAGATTCTATTCACATCAGTGGAGGACATGGGCTGCATGTTTTATACAAGCGGCTTGGTTTCGGTATAAGAGAATGAAAGAGACAAATGAGGTTAAGGAAAAGGAGAATCTTATGATGATGTCAAGTGTGAAATATTATGGAAATGATGATTCTCAATATTTCTCTGCACCTCTGCAAGTGCCAAAAGGATCAAGTTATTCAATGTATTCTGGAAAACTAGTAGGTAGTTTAAGGAGAGGAAGAAGCATGAGATATGGTTCTGAACTTGATATGCTTGGTACATTAAGGAAGCCTATTGAACCAGATTTTAATGATGATGATGATTAA

Protein sequence

>MS.gene75014.t1

MASVISRVVRFHDDLEKEKLQEGEESQMEMSAYEMRSEYKHGKDAINKPSSNGRGLSRVFSEDYDAGEILVFDPRGPRINLWNKIFLAACLISLFVDPLFFYLPVAKKEKCIDMSIGLEVSLTIIRTFVDAFYIIHIYIRFQTAYIAPSSRVSGRGELIIDSSKIASNYMKKEFWSDLVAALPLPQVLIWAVIPNIKGSEMIASRHVVRLVSIFQYLLRLYLIYPLSSKITKASGVMMEKAWAGAAYYLTLYMLASHVLGSTWYLLSIERQDECWKKACTLQYPHCQYHYLDCRSLSDPNRNAWLKSSNLSGLCDQNSHFFQFGIFDDAVTLEITSSNFLTKYYYCLWWGLRNLSSSGENLLTSTHVAEINFAVIVAILGLVLFALLIGNMQTYLQSTTIRLEEWRIRRTDTERWMHHRQLPRYLKENVRRHDQFRWVATRGVDEEAILRDLPVDLRRDIKRHLCLNLVRQVPLFDQMDDRMLDAICERLKPTLCTPGTCIVREGDPVDEMLFIVRGRLDSCTTNGGRTGFFNTCRISSGDFCGEELLPWALDPRPTAVFPSSTRTVRAITEVEAFALIAEDLKFVAAQFRRLHSKQLRQTFRFYSHQWRTWAACFIQAAWFRYKRMKETNEVKEKENLMMMSSVKYYGNDDSQYFSAPLQVPKGSSYSMYSGKLVGSLRRGRSMRYGSELDMLGTLRKPIEPDFNDDDD