Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42746.t1 | XP_013445321.1 | 94 | 268 | 10 | 2 | 1 | 262 | 1 | 268 | 2.80E-139 | 504.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42746.t1 | Q32KT5 | 28.0 | 161 | 102 | 5 | 75 | 221 | 147 | 307 | 3.1e-06 | 53.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42746.t1 | A0A072TPP7 | 94.0 | 268 | 10 | 2 | 1 | 262 | 1 | 268 | 2.0e-139 | 504.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene42746 | 0.847688 | 9.87E-60 | -1.69E-46 |
| MS.gene049369 | MS.gene42746 | 0.802054 | 6.73E-49 | -1.69E-46 |
| MS.gene049396 | MS.gene42746 | 0.823342 | 1.46E-53 | -1.69E-46 |
| MS.gene049488 | MS.gene42746 | 0.800879 | 1.17E-48 | -1.69E-46 |
| MS.gene049757 | MS.gene42746 | 0.804501 | 2.10E-49 | -1.69E-46 |
| MS.gene050060 | MS.gene42746 | 0.806432 | 8.25E-50 | -1.69E-46 |
| MS.gene050426 | MS.gene42746 | -0.839024 | 2.03E-57 | -1.69E-46 |
| MS.gene050670 | MS.gene42746 | 0.863443 | 2.48E-64 | -1.69E-46 |
| MS.gene050971 | MS.gene42746 | 0.842778 | 2.10E-58 | -1.69E-46 |
| MS.gene05105 | MS.gene42746 | 0.814409 | 1.56E-51 | -1.69E-46 |
| MS.gene051360 | MS.gene42746 | 0.807175 | 5.75E-50 | -1.69E-46 |
| MS.gene051521 | MS.gene42746 | 0.821927 | 3.11E-53 | -1.69E-46 |
| MS.gene051525 | MS.gene42746 | 0.853399 | 2.45E-61 | -1.69E-46 |
| MS.gene051588 | MS.gene42746 | 0.81996 | 8.83E-53 | -1.69E-46 |
| MS.gene052011 | MS.gene42746 | -0.827383 | 1.61E-54 | -1.69E-46 |
| MS.gene052077 | MS.gene42746 | 0.823156 | 1.61E-53 | -1.69E-46 |
| MS.gene052134 | MS.gene42746 | 0.804241 | 2.37E-49 | -1.69E-46 |
| MS.gene052135 | MS.gene42746 | 0.816751 | 4.71E-52 | -1.69E-46 |
| MS.gene052136 | MS.gene42746 | 0.807444 | 5.04E-50 | -1.69E-46 |
| MS.gene052188 | MS.gene42746 | 0.838136 | 3.44E-57 | -1.69E-46 |
| MS.gene052253 | MS.gene42746 | 0.836094 | 1.14E-56 | -1.69E-46 |
| MS.gene052340 | MS.gene42746 | 0.830449 | 2.92E-55 | -1.69E-46 |
| MS.gene052346 | MS.gene42746 | 0.812823 | 3.49E-51 | -1.69E-46 |
| MS.gene052414 | MS.gene42746 | 0.850952 | 1.22E-60 | -1.69E-46 |
| MS.gene052485 | MS.gene42746 | 0.807968 | 3.90E-50 | -1.69E-46 |
| MS.gene053169 | MS.gene42746 | 0.877254 | 7.28E-69 | -1.69E-46 |
| MS.gene05316 | MS.gene42746 | 0.844997 | 5.35E-59 | -1.69E-46 |
| MS.gene053449 | MS.gene42746 | 0.839308 | 1.71E-57 | -1.69E-46 |
| MS.gene053758 | MS.gene42746 | 0.824189 | 9.24E-54 | -1.69E-46 |
| MS.gene053889 | MS.gene42746 | 0.815548 | 8.74E-52 | -1.69E-46 |
| MS.gene053912 | MS.gene42746 | 0.820828 | 5.58E-53 | -1.69E-46 |
| MS.gene054183 | MS.gene42746 | 0.840553 | 8.11E-58 | -1.69E-46 |
| MS.gene054349 | MS.gene42746 | 0.845905 | 3.03E-59 | -1.69E-46 |
| MS.gene054556 | MS.gene42746 | 0.884224 | 2.30E-71 | -1.69E-46 |
| MS.gene055116 | MS.gene42746 | 0.815218 | 1.03E-51 | -1.69E-46 |
| MS.gene055369 | MS.gene42746 | 0.825226 | 5.26E-54 | -1.69E-46 |
| MS.gene055539 | MS.gene42746 | 0.820621 | 6.23E-53 | -1.69E-46 |
| MS.gene05553 | MS.gene42746 | 0.824911 | 6.24E-54 | -1.69E-46 |
| MS.gene05556 | MS.gene42746 | 0.806204 | 9.22E-50 | -1.69E-46 |
| MS.gene055666 | MS.gene42746 | 0.803001 | 4.29E-49 | -1.69E-46 |
| MS.gene055741 | MS.gene42746 | 0.855508 | 6.02E-62 | -1.69E-46 |
| MS.gene055744 | MS.gene42746 | 0.867741 | 1.09E-65 | -1.69E-46 |
| MS.gene055909 | MS.gene42746 | 0.842659 | 2.26E-58 | -1.69E-46 |
| MS.gene055911 | MS.gene42746 | 0.849685 | 2.76E-60 | -1.69E-46 |
| MS.gene056233 | MS.gene42746 | 0.810058 | 1.39E-50 | -1.69E-46 |
| MS.gene056422 | MS.gene42746 | 0.814845 | 1.25E-51 | -1.69E-46 |
| MS.gene056447 | MS.gene42746 | 0.806094 | 9.72E-50 | -1.69E-46 |
| MS.gene056511 | MS.gene42746 | 0.8546 | 1.10E-61 | -1.69E-46 |
| MS.gene056514 | MS.gene42746 | 0.84392 | 1.04E-58 | -1.69E-46 |
| MS.gene056659 | MS.gene42746 | 0.816009 | 6.90E-52 | -1.69E-46 |
| MS.gene056723 | MS.gene42746 | 0.827851 | 1.24E-54 | -1.69E-46 |
| MS.gene056876 | MS.gene42746 | 0.812297 | 4.55E-51 | -1.69E-46 |
| MS.gene057019 | MS.gene42746 | 0.813495 | 2.49E-51 | -1.69E-46 |
| MS.gene057124 | MS.gene42746 | 0.811675 | 6.22E-51 | -1.69E-46 |
| MS.gene057396 | MS.gene42746 | 0.843442 | 1.40E-58 | -1.69E-46 |
| MS.gene057476 | MS.gene42746 | 0.802635 | 5.11E-49 | -1.69E-46 |
| MS.gene057609 | MS.gene42746 | 0.813861 | 2.07E-51 | -1.69E-46 |
| MS.gene057610 | MS.gene42746 | 0.840652 | 7.64E-58 | -1.69E-46 |
| MS.gene057749 | MS.gene42746 | 0.82678 | 2.25E-54 | -1.69E-46 |
| MS.gene057823 | MS.gene42746 | 0.833438 | 5.33E-56 | -1.69E-46 |
| MS.gene057825 | MS.gene42746 | 0.80767 | 4.51E-50 | -1.69E-46 |
| MS.gene058007 | MS.gene42746 | 0.862004 | 6.89E-64 | -1.69E-46 |
| MS.gene058075 | MS.gene42746 | 0.824932 | 6.17E-54 | -1.69E-46 |
| MS.gene058120 | MS.gene42746 | 0.806386 | 8.44E-50 | -1.69E-46 |
| MS.gene058376 | MS.gene42746 | 0.837673 | 4.53E-57 | -1.69E-46 |
| MS.gene058444 | MS.gene42746 | 0.823864 | 1.10E-53 | -1.69E-46 |
| MS.gene058700 | MS.gene42746 | 0.849772 | 2.61E-60 | -1.69E-46 |
| MS.gene058928 | MS.gene42746 | 0.844215 | 8.68E-59 | -1.69E-46 |
| MS.gene058948 | MS.gene42746 | 0.814543 | 1.46E-51 | -1.69E-46 |
| MS.gene058949 | MS.gene42746 | 0.803932 | 2.75E-49 | -1.69E-46 |
| MS.gene058995 | MS.gene42746 | 0.806619 | 7.53E-50 | -1.69E-46 |
| MS.gene059011 | MS.gene42746 | 0.804656 | 1.95E-49 | -1.69E-46 |
| MS.gene059080 | MS.gene42746 | 0.811167 | 8.02E-51 | -1.69E-46 |
| MS.gene059082 | MS.gene42746 | 0.846033 | 2.80E-59 | -1.69E-46 |
| MS.gene059366 | MS.gene42746 | 0.830877 | 2.29E-55 | -1.69E-46 |
| MS.gene059420 | MS.gene42746 | 0.863959 | 1.71E-64 | -1.69E-46 |
| MS.gene059462 | MS.gene42746 | 0.846699 | 1.84E-59 | -1.69E-46 |
| MS.gene059674 | MS.gene42746 | 0.852074 | 5.86E-61 | -1.69E-46 |
| MS.gene059688 | MS.gene42746 | 0.82317 | 1.60E-53 | -1.69E-46 |
| MS.gene059695 | MS.gene42746 | 0.801108 | 1.05E-48 | -1.69E-46 |
| MS.gene059807 | MS.gene42746 | 0.901691 | 2.07E-78 | -1.69E-46 |
| MS.gene059870 | MS.gene42746 | 0.802673 | 5.02E-49 | -1.69E-46 |
| MS.gene059876 | MS.gene42746 | 0.839878 | 1.22E-57 | -1.69E-46 |
| MS.gene059933 | MS.gene42746 | 0.827027 | 1.96E-54 | -1.69E-46 |
| MS.gene060247 | MS.gene42746 | 0.813859 | 2.07E-51 | -1.69E-46 |
| MS.gene060372 | MS.gene42746 | 0.847368 | 1.21E-59 | -1.69E-46 |
| MS.gene060401 | MS.gene42746 | 0.809604 | 1.74E-50 | -1.69E-46 |
| MS.gene060403 | MS.gene42746 | 0.829679 | 4.50E-55 | -1.69E-46 |
| MS.gene060837 | MS.gene42746 | 0.82215 | 2.76E-53 | -1.69E-46 |
| MS.gene060986 | MS.gene42746 | 0.821407 | 4.10E-53 | -1.69E-46 |
| MS.gene061154 | MS.gene42746 | 0.844856 | 5.83E-59 | -1.69E-46 |
| MS.gene061159 | MS.gene42746 | 0.820549 | 6.47E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene42746 | MS.gene42747 | PPI |
| MS.gene42746 | MS.gene069717 | PPI |
| MS.gene42746 | MS.gene62495 | PPI |
| MS.gene42746 | MS.gene045724 | PPI |
| MS.gene045724 | MS.gene42746 | PPI |
| MS.gene42746 | MS.gene068946 | PPI |
| MS.gene42746 | MS.gene066192 | PPI |
| MS.gene42746 | MS.gene36105 | PPI |
| MS.gene42746 | MS.gene038976 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42746.t1 | MTR_8g046460 | 93.284 | 268 | 12 | 2 | 1 | 262 | 1 | 268 | 5.61e-178 | 490 |
| MS.gene42746.t1 | MTR_2g064370 | 70.522 | 268 | 72 | 4 | 1 | 262 | 1 | 267 | 3.79e-131 | 372 |
| MS.gene42746.t1 | MTR_8g028425 | 57.143 | 154 | 63 | 2 | 72 | 223 | 92 | 244 | 5.45e-65 | 203 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42746.t1 | AT1G16320 | 69.231 | 221 | 67 | 1 | 43 | 262 | 53 | 273 | 4.49e-117 | 336 |
| MS.gene42746.t1 | AT1G79510 | 60.714 | 280 | 87 | 5 | 1 | 262 | 1 | 275 | 1.99e-116 | 335 |
| MS.gene42746.t1 | AT1G79510 | 60.714 | 280 | 87 | 5 | 1 | 262 | 1 | 275 | 1.99e-116 | 335 |
| MS.gene42746.t1 | AT2G46220 | 57.325 | 157 | 64 | 2 | 69 | 223 | 81 | 236 | 2.50e-66 | 206 |
Find 57 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGAAACCGGTTTCGGTTT+TGG | 0.220818 | 8.2:+54844002 | MS.gene42746:CDS |
| GACCCTTTGAACACATTTAC+TGG | 0.240823 | 8.2:+54843718 | MS.gene42746:CDS |
| AGAAGTACAAGTTGATCTTT+TGG | 0.270946 | 8.2:+54843746 | MS.gene42746:CDS |
| AGGTACTTCGCGGTATAAAT+TGG | 0.272271 | 8.2:+54843915 | MS.gene42746:CDS |
| ACCTTAATTATGATATTTAT+AGG | 0.278702 | 8.2:+54843252 | MS.gene42746:CDS |
| ACCTATAAATATCATAATTA+AGG | 0.297853 | 8.2:-54843253 | None:intergenic |
| CCCCATGAAAATGTTGGATT+TGG | 0.313331 | 8.2:-54844051 | None:intergenic |
| TGGATTCTAGTTCATGTTCA+TGG | 0.337564 | 8.2:+54844079 | MS.gene42746:CDS |
| GAATAAAGAGTATTGAGAAA+TGG | 0.346750 | 8.2:-54843060 | None:intergenic |
| AATAAAGAGTATTGAGAAAT+GGG | 0.349742 | 8.2:-54843059 | None:intergenic |
| GTTTGGATGTATACAGAATA+TGG | 0.351747 | 8.2:+54843809 | MS.gene42746:CDS |
| TTGGTGTTTGAATCTTGATT+TGG | 0.370847 | 8.2:-54843018 | None:intergenic |
| TGTTTATCTTGAGTAGCTAA+TGG | 0.394872 | 8.2:-54843140 | None:intergenic |
| GAAGATGATGAAACCGGTTT+CGG | 0.396965 | 8.2:+54843996 | MS.gene42746:CDS |
| GTTGTTACCACCAGATGGTT+TGG | 0.415329 | 8.2:+54844149 | MS.gene42746:CDS |
| GGAACTTGAGGGGTGTGCCT+AGG | 0.417152 | 8.2:+54843863 | MS.gene42746:CDS |
| TTTGTTTCGTGAGATTGGTT+TGG | 0.421815 | 8.2:+54843792 | MS.gene42746:CDS |
| GAACTTGAGGGGTGTGCCTA+GGG | 0.426698 | 8.2:+54843864 | MS.gene42746:CDS |
| ACCAAATCCAAAACCGAAAC+CGG | 0.442141 | 8.2:-54844009 | None:intergenic |
| CAACCTGTGCAGTGAAACTT+TGG | 0.444081 | 8.2:-54843103 | None:intergenic |
| AATGTTGGATTTGGACTAGC+AGG | 0.451399 | 8.2:-54844042 | None:intergenic |
| TTTCACTGCACAGGTTGCTC+AGG | 0.452221 | 8.2:+54843109 | MS.gene42746:CDS |
| GGGGTGTGCCTAGGGTTCCA+TGG | 0.454206 | 8.2:+54843872 | MS.gene42746:CDS |
| GGGTGTGCCTAGGGTTCCAT+GGG | 0.462556 | 8.2:+54843873 | MS.gene42746:CDS |
| TTGAATCTTGATTTGGATTG+AGG | 0.469278 | 8.2:-54843011 | None:intergenic |
| GAACATGCAGCCAAACCATC+TGG | 0.478212 | 8.2:-54844159 | None:intergenic |
| CAGAGAATGTGATATTGATC+AGG | 0.478427 | 8.2:+54843839 | MS.gene42746:CDS |
| TACCAGTAAATGTGTTCAAA+GGG | 0.481927 | 8.2:-54843720 | None:intergenic |
| AGTCCAAAGTTTCACTGCAC+AGG | 0.485891 | 8.2:+54843100 | MS.gene42746:CDS |
| TCCACAGAAGATGATGAAAC+CGG | 0.487224 | 8.2:+54843990 | MS.gene42746:CDS |
| ATACCAGTAAATGTGTTCAA+AGG | 0.496720 | 8.2:-54843721 | None:intergenic |
| TAAACAGAATCAGCATCAAA+AGG | 0.500362 | 8.2:+54843157 | MS.gene42746:CDS |
| GAAGCTAAAGGTGAATTTCA+AGG | 0.517611 | 8.2:+54843895 | MS.gene42746:CDS |
| GTGAATTTCAAGGTACTTCG+CGG | 0.529074 | 8.2:+54843905 | MS.gene42746:CDS |
| ATCAATATCACATTCTCTGA+AGG | 0.533171 | 8.2:-54843835 | None:intergenic |
| AATTCACCTTTAGCTTCCCA+TGG | 0.534577 | 8.2:-54843889 | None:intergenic |
| TTAGCTTCCCATGGAACCCT+AGG | 0.536034 | 8.2:-54843880 | None:intergenic |
| TATTGATCAGGTGGAACTTG+AGG | 0.540071 | 8.2:+54843851 | MS.gene42746:CDS |
| AAAGGACCCCATGAAAATGT+TGG | 0.541364 | 8.2:-54844057 | None:intergenic |
| ATTGATCAGGTGGAACTTGA+GGG | 0.551874 | 8.2:+54843852 | MS.gene42746:CDS |
| ACCGGTTTCATCATCTTCTG+TGG | 0.561359 | 8.2:-54843991 | None:intergenic |
| AGGGTTCCATGGGAAGCTAA+AGG | 0.578430 | 8.2:+54843883 | MS.gene42746:CDS |
| GAAAGATTGAGATTGCAAAG+AGG | 0.578460 | 8.2:-54842981 | None:intergenic |
| AGGTCTTTAACAAAGATCAA+AGG | 0.587544 | 8.2:-54843233 | None:intergenic |
| AGACAGTTGTTACCACCAGA+TGG | 0.589181 | 8.2:+54844144 | MS.gene42746:CDS |
| GCAGTGAAACTTTGGACTGA+AGG | 0.593412 | 8.2:-54843095 | None:intergenic |
| AGAATGTGATATTGATCAGG+TGG | 0.610163 | 8.2:+54843842 | MS.gene42746:CDS |
| TCAAGCAGTTAAGCACACAT+TGG | 0.624208 | 8.2:+54844113 | MS.gene42746:CDS |
| CTTCGCGGTATAAATTGGAT+CGG | 0.643822 | 8.2:+54843920 | MS.gene42746:CDS |
| GAACATGAACTAGAATCCAA+AGG | 0.647700 | 8.2:-54844075 | None:intergenic |
| TGCTGTTAGAACCCTTCGTG+AGG | 0.651000 | 8.2:+54843205 | MS.gene42746:CDS |
| CGGTATAAATTGGATCGGAA+CGG | 0.651485 | 8.2:+54843925 | MS.gene42746:CDS |
| TTGATCAGGTGGAACTTGAG+GGG | 0.654298 | 8.2:+54843853 | MS.gene42746:CDS |
| CAAAGGCATATCCTCACGAA+GGG | 0.657035 | 8.2:-54843216 | None:intergenic |
| ATGTTGGATTTGGACTAGCA+GGG | 0.662829 | 8.2:-54844041 | None:intergenic |
| TCAAAGGCATATCCTCACGA+AGG | 0.664210 | 8.2:-54843217 | None:intergenic |
| CATGCAGCCAAACCATCTGG+TGG | 0.695452 | 8.2:-54844156 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACCTATAAATATCATAATTA+AGG | - | chr8.2:54843256-54843275 | None:intergenic | 15.0% |
| !! | ACCTTAATTATGATATTTAT+AGG | + | chr8.2:54843252-54843271 | MS.gene42746:CDS | 15.0% |
| !! | GATGATGTAATTAATATTTA+TGG | + | chr8.2:54843401-54843420 | MS.gene42746:intron | 15.0% |
| !!! | AAAAATTGGATTTTTAATGT+TGG | + | chr8.2:54843362-54843381 | MS.gene42746:intron | 15.0% |
| !!! | AAAATTGGATTTTTAATGTT+GGG | + | chr8.2:54843363-54843382 | MS.gene42746:intron | 15.0% |
| !!! | ATAGTTAGAATTTTAATGTT+GGG | + | chr8.2:54843659-54843678 | MS.gene42746:intron | 15.0% |
| !!! | TAAAAAAAGTTAATTTTGAG+TGG | + | chr8.2:54843604-54843623 | MS.gene42746:intron | 15.0% |
| !!! | TATAGTTAGAATTTTAATGT+TGG | + | chr8.2:54843658-54843677 | MS.gene42746:intron | 15.0% |
| !!! | TTGCTTTTCATATAAATATA+TGG | + | chr8.2:54843305-54843324 | MS.gene42746:intron | 15.0% |
| !!! | AATAAAGAGTATTGAGAAAT+GGG | - | chr8.2:54843062-54843081 | None:intergenic | 20.0% |
| !!! | AATTTTGAGTGGAAAAAAAT+TGG | + | chr8.2:54843615-54843634 | MS.gene42746:intron | 20.0% |
| !!! | ATTTCTAGGTGAAAAAAAAT+TGG | + | chr8.2:54843348-54843367 | MS.gene42746:intron | 20.0% |
| !!! | ATTTGAATTGTGTTATTTCT+AGG | + | chr8.2:54843334-54843353 | MS.gene42746:intron | 20.0% |
| !!! | ATTTTGAGTGGAAAAAAATT+GGG | + | chr8.2:54843616-54843635 | MS.gene42746:intron | 20.0% |
| !!! | CTTTTTTTATACATAGAAAG+TGG | - | chr8.2:54843593-54843612 | None:intergenic | 20.0% |
| ! | ATTAATATTTATGGACCCTT+TGG | + | chr8.2:54843410-54843429 | MS.gene42746:intron | 25.0% |
| ! | TTAATTCTGAGTAATCTGTA+AGG | + | chr8.2:54843466-54843485 | MS.gene42746:intron | 25.0% |
| !! | TATAGGTAATTTTCTCATCT+GGG | + | chr8.2:54843269-54843288 | MS.gene42746:intron | 25.0% |
| !! | TTATAGGTAATTTTCTCATC+TGG | + | chr8.2:54843268-54843287 | MS.gene42746:intron | 25.0% |
| !!! | GAATAAAGAGTATTGAGAAA+TGG | - | chr8.2:54843063-54843082 | None:intergenic | 25.0% |
| !!! | TGGGTTTGATAATTTTTTCA+GGG | + | chr8.2:54843678-54843697 | MS.gene42746:intron | 25.0% |
| !!! | TTGGGTTTGATAATTTTTTC+AGG | + | chr8.2:54843677-54843696 | MS.gene42746:intron | 25.0% |
| AAATGTCGATATAGTTAGGT+CGG | + | chr8.2:54843504-54843523 | MS.gene42746:intron | 30.0% | |
| AGGTCTTTAACAAAGATCAA+AGG | - | chr8.2:54843236-54843255 | None:intergenic | 30.0% | |
| ATACCAGTAAATGTGTTCAA+AGG | - | chr8.2:54843724-54843743 | None:intergenic | 30.0% | |
| ATCAATATCACATTCTCTGA+AGG | - | chr8.2:54843838-54843857 | None:intergenic | 30.0% | |
| GTTTGGATGTATACAGAATA+TGG | + | chr8.2:54843809-54843828 | MS.gene42746:CDS | 30.0% | |
| TAAACAGAATCAGCATCAAA+AGG | + | chr8.2:54843157-54843176 | MS.gene42746:CDS | 30.0% | |
| TACCAGTAAATGTGTTCAAA+GGG | - | chr8.2:54843723-54843742 | None:intergenic | 30.0% | |
| TGGTAAATGTCGATATAGTT+AGG | + | chr8.2:54843500-54843519 | MS.gene42746:intron | 30.0% | |
| TGTTTATCTTGAGTAGCTAA+TGG | - | chr8.2:54843143-54843162 | None:intergenic | 30.0% | |
| ! | TCCAAATCCAACATTTTCAT+GGG | + | chr8.2:54844050-54844069 | MS.gene42746:CDS | 30.0% |
| ! | TGGATTTTTAATGTTGGGTT+TGG | + | chr8.2:54843368-54843387 | MS.gene42746:intron | 30.0% |
| ! | TTGGTGTTTGAATCTTGATT+TGG | - | chr8.2:54843021-54843040 | None:intergenic | 30.0% |
| !! | AGAATTTTGTTTCGTGAGAT+TGG | + | chr8.2:54843787-54843806 | MS.gene42746:CDS | 30.0% |
| !! | GATGAGTTTTATCTCAATCT+TGG | + | chr8.2:54843179-54843198 | MS.gene42746:CDS | 30.0% |
| !! | TGTTGGGTTTGGTAATTTTA+AGG | + | chr8.2:54843379-54843398 | MS.gene42746:intron | 30.0% |
| !! | TTGAATCTTGATTTGGATTG+AGG | - | chr8.2:54843014-54843033 | None:intergenic | 30.0% |
| !!! | AGAAGTACAAGTTGATCTTT+TGG | + | chr8.2:54843746-54843765 | MS.gene42746:CDS | 30.0% |
| !!! | GAAGTACAAGTTGATCTTTT+GGG | + | chr8.2:54843747-54843766 | MS.gene42746:CDS | 30.0% |
| ACCAATATATGCACATCCAA+AGG | - | chr8.2:54843429-54843448 | None:intergenic | 35.0% | |
| AGAATGTGATATTGATCAGG+TGG | + | chr8.2:54843842-54843861 | MS.gene42746:CDS | 35.0% | |
| CAGAGAATGTGATATTGATC+AGG | + | chr8.2:54843839-54843858 | MS.gene42746:CDS | 35.0% | |
| CCAATATATGCACATCCAAA+GGG | - | chr8.2:54843428-54843447 | None:intergenic | 35.0% | |
| GAAAGATTGAGATTGCAAAG+AGG | - | chr8.2:54842984-54843003 | None:intergenic | 35.0% | |
| GAACATGAACTAGAATCCAA+AGG | - | chr8.2:54844078-54844097 | None:intergenic | 35.0% | |
| GAAGCTAAAGGTGAATTTCA+AGG | + | chr8.2:54843895-54843914 | MS.gene42746:CDS | 35.0% | |
| ! | CAGGGATGATGTAACATTTT+TGG | + | chr8.2:54843696-54843715 | MS.gene42746:intron | 35.0% |
| ! | CCAAATCCAACATTTTCATG+GGG | + | chr8.2:54844051-54844070 | MS.gene42746:CDS | 35.0% |
| ! | GTCCAAATCCAACATTTTCA+TGG | + | chr8.2:54844049-54844068 | MS.gene42746:CDS | 35.0% |
| ! | TTTGTTTCGTGAGATTGGTT+TGG | + | chr8.2:54843792-54843811 | MS.gene42746:CDS | 35.0% |
| !! | TGGATTCTAGTTCATGTTCA+TGG | + | chr8.2:54844079-54844098 | MS.gene42746:CDS | 35.0% |
| !!! | GTTTTGAAGAAGACAGTGTT+TGG | - | chr8.2:54843040-54843059 | None:intergenic | 35.0% |
| AAAGGACCCCATGAAAATGT+TGG | - | chr8.2:54844060-54844079 | None:intergenic | 40.0% | |
| ACCAAATCCAAAACCGAAAC+CGG | - | chr8.2:54844012-54844031 | None:intergenic | 40.0% | |
| AGGTACTTCGCGGTATAAAT+TGG | + | chr8.2:54843915-54843934 | MS.gene42746:CDS | 40.0% | |
| ATTGATCAGGTGGAACTTGA+GGG | + | chr8.2:54843852-54843871 | MS.gene42746:CDS | 40.0% | |
| CCCCATGAAAATGTTGGATT+TGG | - | chr8.2:54844054-54844073 | None:intergenic | 40.0% | |
| CCCTTTGGATGTGCATATAT+TGG | + | chr8.2:54843425-54843444 | MS.gene42746:intron | 40.0% | |
| CGGTATAAATTGGATCGGAA+CGG | + | chr8.2:54843925-54843944 | MS.gene42746:CDS | 40.0% | |
| CTTCGCGGTATAAATTGGAT+CGG | + | chr8.2:54843920-54843939 | MS.gene42746:CDS | 40.0% | |
| GACCCTTTGAACACATTTAC+TGG | + | chr8.2:54843718-54843737 | MS.gene42746:CDS | 40.0% | |
| TATTGATCAGGTGGAACTTG+AGG | + | chr8.2:54843851-54843870 | MS.gene42746:CDS | 40.0% | |
| TCAAGCAGTTAAGCACACAT+TGG | + | chr8.2:54844113-54844132 | MS.gene42746:CDS | 40.0% | |
| TCCACAGAAGATGATGAAAC+CGG | + | chr8.2:54843990-54844009 | MS.gene42746:CDS | 40.0% | |
| ! | AACATTTTCATGGGGTCCTT+TGG | + | chr8.2:54844059-54844078 | MS.gene42746:CDS | 40.0% |
| ! | AATTCACCTTTAGCTTCCCA+TGG | - | chr8.2:54843892-54843911 | None:intergenic | 40.0% |
| ! | GAAGATGATGAAACCGGTTT+CGG | + | chr8.2:54843996-54844015 | MS.gene42746:CDS | 40.0% |
| ! | GTGAATTTCAAGGTACTTCG+CGG | + | chr8.2:54843905-54843924 | MS.gene42746:CDS | 40.0% |
| !! | AATGTTGGATTTGGACTAGC+AGG | - | chr8.2:54844045-54844064 | None:intergenic | 40.0% |
| !! | AGTTGATCTTTTGGGCATTG+AGG | + | chr8.2:54843755-54843774 | MS.gene42746:CDS | 40.0% |
| !! | ATGTTGGATTTGGACTAGCA+GGG | - | chr8.2:54844044-54844063 | None:intergenic | 40.0% |
| !!! | TTTTGGGCATTGAGGTTTCA+TGG | + | chr8.2:54843763-54843782 | MS.gene42746:CDS | 40.0% |
| AGACAGTTGTTACCACCAGA+TGG | + | chr8.2:54844144-54844163 | MS.gene42746:CDS | 45.0% | |
| AGTCCAAAGTTTCACTGCAC+AGG | + | chr8.2:54843100-54843119 | MS.gene42746:CDS | 45.0% | |
| CAACCTGTGCAGTGAAACTT+TGG | - | chr8.2:54843106-54843125 | None:intergenic | 45.0% | |
| CGACATTTACCAGTTGAGCT+AGG | - | chr8.2:54843492-54843511 | None:intergenic | 45.0% | |
| GCAGTGAAACTTTGGACTGA+AGG | - | chr8.2:54843098-54843117 | None:intergenic | 45.0% | |
| GTTGTTACCACCAGATGGTT+TGG | + | chr8.2:54844149-54844168 | MS.gene42746:CDS | 45.0% | |
| TTGATCAGGTGGAACTTGAG+GGG | + | chr8.2:54843853-54843872 | MS.gene42746:CDS | 45.0% | |
| ! | ACCGGTTTCATCATCTTCTG+TGG | - | chr8.2:54843994-54844013 | None:intergenic | 45.0% |
| ! | CAAAGGCATATCCTCACGAA+GGG | - | chr8.2:54843219-54843238 | None:intergenic | 45.0% |
| ! | TCAAAGGCATATCCTCACGA+AGG | - | chr8.2:54843220-54843239 | None:intergenic | 45.0% |
| !! | GATGAAACCGGTTTCGGTTT+TGG | + | chr8.2:54844002-54844021 | MS.gene42746:CDS | 45.0% |
| !!! | ACCGGTTTCGGTTTTGGATT+TGG | + | chr8.2:54844008-54844027 | MS.gene42746:CDS | 45.0% |
| AGGGTTCCATGGGAAGCTAA+AGG | + | chr8.2:54843883-54843902 | MS.gene42746:CDS | 50.0% | |
| AGTCGTTCGAACCCAGGTTA+AGG | - | chr8.2:54843533-54843552 | None:intergenic | 50.0% | |
| GAACATGCAGCCAAACCATC+TGG | - | chr8.2:54844162-54844181 | None:intergenic | 50.0% | |
| TAGGTCGGACACCTTAACCT+GGG | + | chr8.2:54843519-54843538 | MS.gene42746:intron | 50.0% | |
| TCTGTAAGGCCTAGCTCAAC+TGG | + | chr8.2:54843480-54843499 | MS.gene42746:intron | 50.0% | |
| TGCTGTTAGAACCCTTCGTG+AGG | + | chr8.2:54843205-54843224 | MS.gene42746:CDS | 50.0% | |
| TTAGCTTCCCATGGAACCCT+AGG | - | chr8.2:54843883-54843902 | None:intergenic | 50.0% | |
| TTAGGTCGGACACCTTAACC+TGG | + | chr8.2:54843518-54843537 | MS.gene42746:intron | 50.0% | |
| TTTCACTGCACAGGTTGCTC+AGG | + | chr8.2:54843109-54843128 | MS.gene42746:CDS | 50.0% | |
| CATGCAGCCAAACCATCTGG+TGG | - | chr8.2:54844159-54844178 | None:intergenic | 55.0% | |
| TCGAACGACTCGCAGTCAAG+TGG | + | chr8.2:54843543-54843562 | MS.gene42746:intron | 55.0% | |
| ! | GAACTTGAGGGGTGTGCCTA+GGG | + | chr8.2:54843864-54843883 | MS.gene42746:CDS | 55.0% |
| ACTGCGAGTCGTTCGAACCC+AGG | - | chr8.2:54843539-54843558 | None:intergenic | 60.0% | |
| GGGTGTGCCTAGGGTTCCAT+GGG | + | chr8.2:54843873-54843892 | MS.gene42746:CDS | 60.0% | |
| ! | GGAACTTGAGGGGTGTGCCT+AGG | + | chr8.2:54843863-54843882 | MS.gene42746:CDS | 60.0% |
| GGGGTGTGCCTAGGGTTCCA+TGG | + | chr8.2:54843872-54843891 | MS.gene42746:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 54842972 | 54844185 | 54842972 | ID=MS.gene42746 |
| chr8.2 | mRNA | 54842972 | 54844185 | 54842972 | ID=MS.gene42746.t1;Parent=MS.gene42746 |
| chr8.2 | exon | 54842972 | 54843273 | 54842972 | ID=MS.gene42746.t1.exon1;Parent=MS.gene42746.t1 |
| chr8.2 | CDS | 54842972 | 54843273 | 54842972 | ID=cds.MS.gene42746.t1;Parent=MS.gene42746.t1 |
| chr8.2 | exon | 54843699 | 54844185 | 54843699 | ID=MS.gene42746.t1.exon2;Parent=MS.gene42746.t1 |
| chr8.2 | CDS | 54843699 | 54844185 | 54843699 | ID=cds.MS.gene42746.t1;Parent=MS.gene42746.t1 |
| Gene Sequence |
| Protein sequence |
