AlfalfaGEDB | MS.gene24611

M. sativa cultivar XinJiangDaYe / MS.gene24611

KEGG: K05391
GO: GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0022803 GO:0022832 GO:0022836 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0110165
PFAM: PF00027.32 PF00520.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24611.t1	XP_003590482.1	98.3	710	12	0	1	710	1	710	0.00E+00	1402.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24611.t1	G7IBJ4	98.3	710	12	0	1	710	1	710	0.0e+00	1402.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24611.t1	A0A396JNB2	98.5	683	10	0	28	710	1	683	0.0e+00	1357.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049356	MS.gene24611	0.870243	1.69E-66	-1.69E-46
MS.gene049369	MS.gene24611	0.863307	2.73E-64	-1.69E-46
MS.gene049396	MS.gene24611	0.849325	3.48E-60	-1.69E-46
MS.gene049488	MS.gene24611	0.809771	1.60E-50	-1.69E-46
MS.gene049609	MS.gene24611	0.824103	9.67E-54	-1.69E-46
MS.gene049805	MS.gene24611	0.814387	1.58E-51	-1.69E-46
MS.gene049907	MS.gene24611	0.804319	2.29E-49	-1.69E-46
MS.gene050122	MS.gene24611	0.82346	1.37E-53	-1.69E-46
MS.gene050499	MS.gene24611	0.83537	1.75E-56	-1.69E-46
MS.gene050502	MS.gene24611	0.834559	2.79E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene24611.t1	MTR_1g064240	98.310	710	12	0	1	710	1	710	1454
MS.gene24611.t1	MTR_2g094860	60.311	708	264	5	7	708	7	703	898
MS.gene24611.t1	MTR_4g058730	68.128	593	185	2	41	629	25	617	860
MS.gene24611.t1	MTR_2g460590	54.505	666	284	6	58	710	30	689	741
MS.gene24611.t1	MTR_3g109030	53.433	670	291	7	58	709	60	726	721
MS.gene24611.t1	MTR_4g130820	51.802	666	300	10	51	709	78	729	692
MS.gene24611.t1	MTR_7g034605	49.273	688	312	7	46	708	5	680	692
MS.gene24611.t1	MTR_1g028370	50.143	700	313	10	18	709	44	715	686
MS.gene24611.t1	MTR_3g091080	51.271	669	300	10	48	709	63	712	681
MS.gene24611.t1	MTR_3g088875	50.153	652	309	4	71	706	36	687	676

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene24611.t1	AT2G28260	59.886	703	252	2	6	708	6	678	874
MS.gene24611.t1	AT2G28260	62.405	657	220	1	52	708	9	638	866
MS.gene24611.t1	AT2G24610	50.826	726	326	10	8	709	8	726	715
MS.gene24611.t1	AT2G24610	50.691	724	326	9	10	709	25	741	712
MS.gene24611.t1	AT4G30360	52.154	650	300	5	71	710	71	719	705
MS.gene24611.t1	AT2G23980	49.566	692	334	8	29	709	59	746	696
MS.gene24611.t1	AT2G23980	49.566	692	334	8	29	709	59	746	696
MS.gene24611.t1	AT2G23980	49.566	692	334	8	29	709	59	746	696
MS.gene24611.t1	AT2G23980	49.566	692	334	8	29	709	59	746	696
MS.gene24611.t1	AT2G23980	49.566	692	334	8	29	709	59	746	696

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Find 130 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAGTTCTACCACCGT+TGG	0.651859	1.2:-49087788	None:intergenic
AAACCAACTCTATGCACTCC+AGG	0.588925	1.2:+49087688	MS.gene24611:CDS
AAATGAGTGCATATGAGATG+AGG	0.698871	1.2:+49084823	MS.gene24611:CDS
AAATGCTTCGACTTCTGTGA+TGG	0.558128	1.2:-49087923	None:intergenic
AAATTTATTCTAGGTCCTCT+AGG	0.441726	1.2:-49084957	None:intergenic
AACACCTGCAGAATAAGCTC+AGG	0.570561	1.2:+49087814	MS.gene24611:CDS
AACAGTCACTTCTTTCAGTT+TGG	0.303420	1.2:+49086384	MS.gene24611:CDS
AAGCCATCATCAAATGGAAG+AGG	0.574296	1.2:+49084879	MS.gene24611:CDS
AAGTGTATTGATATGTCAAT+TGG	0.485639	1.2:+49085065	MS.gene24611:CDS
AATTTATTCTAGGTCCTCTA+GGG	0.546116	1.2:-49084956	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTTATTCTAGGTCCTCT+AGG	-	chr1.2:49084960-49084979	None:intergenic	30.0%
AAGCTATCCTATAGAACTTA+CGG	-	chr1.2:49086050-49086069	None:intergenic	30.0%
AATTTATTCTAGGTCCTCTA+GGG	-	chr1.2:49084959-49084978	None:intergenic	30.0%
ACTGGTAAGTAAAAGAAAAG+TGG	-	chr1.2:49085032-49085051	None:intergenic	30.0%
AGATAATGATATTGGCAATG+TGG	-	chr1.2:49086288-49086307	None:intergenic	30.0%
ATAAACAAGCCATCATCAAA+TGG	+	chr1.2:49084873-49084892	MS.gene24611:CDS	30.0%
ATAATGCTAGGTACTCATTT+GGG	+	chr1.2:49085633-49085652	MS.gene24611:intron	30.0%
ATATTCCAGAAATTCATTCG+TGG	+	chr1.2:49087401-49087420	MS.gene24611:intron	30.0%
CTGATGTGAATAGAATCTAA+AGG	-	chr1.2:49088022-49088041	None:intergenic	30.0%
CTGCAAATTCATCATAGAAT+TGG	-	chr1.2:49086572-49086591	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	49084484	49088350	49084484	ID=MS.gene24611
chr1.2	mRNA	49084484	49088350	49084484	ID=MS.gene24611.t1;Parent=MS.gene24611
chr1.2	exon	49084484	49084512	49084484	ID=MS.gene24611.t1.exon1;Parent=MS.gene24611.t1
chr1.2	CDS	49084484	49084512	49084484	ID=cds.MS.gene24611.t1;Parent=MS.gene24611.t1
chr1.2	exon	49084767	49085295	49084767	ID=MS.gene24611.t1.exon2;Parent=MS.gene24611.t1
chr1.2	CDS	49084767	49085295	49084767	ID=cds.MS.gene24611.t1;Parent=MS.gene24611.t1
chr1.2	exon	49085643	49085855	49085643	ID=MS.gene24611.t1.exon3;Parent=MS.gene24611.t1
chr1.2	CDS	49085643	49085855	49085643	ID=cds.MS.gene24611.t1;Parent=MS.gene24611.t1
chr1.2	exon	49086207	49086499	49086207	ID=MS.gene24611.t1.exon4;Parent=MS.gene24611.t1
chr1.2	CDS	49086207	49086499	49086207	ID=cds.MS.gene24611.t1;Parent=MS.gene24611.t1
chr1.2	exon	49086592	49086703	49086592	ID=MS.gene24611.t1.exon5;Parent=MS.gene24611.t1
chr1.2	CDS	49086592	49086703	49086592	ID=cds.MS.gene24611.t1;Parent=MS.gene24611.t1
chr1.2	exon	49086972	49087208	49086972	ID=MS.gene24611.t1.exon6;Parent=MS.gene24611.t1
chr1.2	CDS	49086972	49087208	49086972	ID=cds.MS.gene24611.t1;Parent=MS.gene24611.t1
chr1.2	exon	49087631	49088350	49087631	ID=MS.gene24611.t1.exon7;Parent=MS.gene24611.t1
chr1.2	CDS	49087631	49088350	49087631	ID=cds.MS.gene24611.t1;Parent=MS.gene24611.t1

Gene Sequence

>MS.gene24611

ATGGCTTCTGTTATATCAAGAGTCGTAAGGTTTGCATAATCTTCCCTTTAACATTGTAATTAATATGACTTATCAACTTAAGAAATTATATTTCTATTGTACTATATCGTTATTTTCAACTTCGTTTATTTATTTCTAATCCCGAAGAAGTAGCCTAGTGGTATGAGTTGATACATCGAGTGAGTTCTATCTAGTAGGTCTAGGGTTTGATCGTTACTACTAACAATTTCTTTTTTTACAAAAATATGTTTGGTGCTAAAATTCAGTGTTATTGTGAACTCAGGTTTCATGATGATCTTGAAAAAGAGAAATTACAAGAAGGTGAAGAAAGTCAAATGGAAATGAGTGCATATGAGATGAGGAGTGAATACAAGCATGGAAAAGATGCAATAAACAAGCCATCATCAAATGGAAGAGGACTTTCAAGAGTTTTTTCTGAAGATTATGACGCAGGAGAGATTTTAGTATTCGACCCTAGAGGACCTAGAATAAATTTATGGAACAAAATATTCTTAGCAGCTTGTTTGATTTCATTGTTTGTGGATCCACTTTTCTTTTACTTACCAGTTGCTAAGAAAGAAAAGTGTATTGATATGTCAATTGGTCTTGAAGTTTCACTTACTATAATTAGAACATTTGTTGATGCATTTTACATTATTCATATCTATATTAGGTTTCAAACTGCTTATATTGCTCCTTCATCTCGTGTTTCTGGTCGAGGAGAACTCATTATTGATTCCTCAAAGATTGCATCAAACTACATGAAAAAGGAATTTTGGTCTGATCTTGTTGCAGCACTACCACTTCCTCAGGTATATTCCTGATATTCATTTTTAATTATCAGTATAAATCACTTCATCCTCCAAGGGCTTCATCACATGTGGTTTTCTACACTTCTATCTTTACTTATAGTAAACCAGCCAAAGAATGTCGCAATAATGCCTACATGGCTAACAATTCATTGAAGAAATAGTGAAAATGTTTTAAAACTCCCGTAAAGTGTGAGCGAGTACAAAATATGTTTAAATGTTCTGTGTTGGTTTGTAGGGACAGTCACAAATCCTGAAAGAATGTATTAGCCGTTCTTCGCATAATTAAAATATGAATTTTATGGTTTGCAAACATGGCTAACAATTTGATAATTCATATATAATGCTAGGTACTCATTTGGGCTGTAATTCCAAATATAAAAGGGTCAGAAATGATTGCATCAAGGCATGTAGTTCGCCTGGTGTCCATTTTCCAGTACTTATTGAGGTTGTATCTTATTTATCCTCTATCATCTAAGATAACCAAGGCAAGTGGAGTAATGATGGAAAAAGCTTGGGCTGGTGCAGCTTATTATTTAACACTCTATATGCTTGCAAGTCATGTAAGTCACTCTTCCGAAAAATGTTTTTCGTAATACTTGCGATCAAAATGGATTTATGTGAGCGTACGTACTGGTATGAGCATTTGTGATACTGTTTGAGGTAACTTATTTGAGCTTATTTACTAACATAAGTATTTTTGCAGACTTTATAAAAACTTATAACATGTCCATAAATTGTTTTTAGCTTATTTCCGTAAGTTCTATAGGATAGCTTATGAAAACAGCTTAGAATTAGATGAAAACAATTTGATTTTAATAGTGTATACATAATCACTTAGATGATACACGCTTATGCTATACGCACTTCCTTGCTTCTGATTCATTTCTTAACCTTTTCTTTATTTCAAAAAGGTTTTAGGATCAACTTGGTACCTGTTATCAATTGAAAGACAAGATGAATGTTGGAAGAAAGCATGTACACTTCAATATCCACATTGCCAATATCATTATCTTGATTGTCGAAGCTTAAGTGATCCAAATAGGAATGCTTGGCTTAAATCAAGCAATCTATCAGGTCTATGTGATCAGAACAGTCACTTCTTTCAGTTTGGAATTTTTTATGATGCTGTGACTTTGGAAATAACTAGCTCAAACTTCTTAACCAAGTATTATTATTGTCTTTGGTGGGGATTGAGGAATCTAAGGTAACTCAAATTTTCGATGAAAAGTTTGATAATTTCTTGAAGTAAAAGTTTTGTCCATATTTATTCTAACCAATTCTATGATGAATTTGCAGCTCTTCAGGAGAGAATCTCCTAACAAGTACACATGTTGCAGAGATAAATTTTGCTGTGATTGTTGCAATTCTTGGATTGGTGCTTTTTGCACTGCTCATAGGAAATATGCAAGTATGTATAGCGATTATCAGTTTATTAATGTGTCATGATCGTTTTCCGTGATATATGTATGTCCTGCTTAGATAAACGGTTTACTTAAATGTTTATTGAATAAATATTAATCATATAAGTGCTTGCATAAGCAATTTCTACAACAAAAGATAAAGCAGCTTAAGCTATACTAGAGAGGTTATGAAAATAAAACAACTTATGGACATGTCACAAACTGCTTTCATAAGCTCTCCCAAACACGCCGTTACATTATTTCTTTTATTGACAGACGTACCTTCAATCGACCACTATACGGCTGGAAGAGTGGCGAATAAGAAGGACAGATACAGAAAGATGGATGCATCACCGGCAGCTCCCTCGTTACCTGAAGGAAAATGTTCGACGCCATGACCAATTTAGATGGGTAGCTACTCGTGGAGTTGACGAGGAAGCAATTCTTAGAGATCTTCCTGTTGATCTAAGACGTGACATTAAACGCCACCTTTGCCTTAATCTAGTTAGACAAGTAAGTAAATCTTTGTTTTCATCTCTGCATCTGTATTTGCTTTTTATTACACAGATTATGGATTAAACGACTTAGATTACACATTCACTAATTTAGATTAGACGGATCTGCTGGGAATCTGTTTCCACTCTACTTTACGTGCAAATAAGATTTTAACTTCTAAATCAGTAACAATTGTGGTCTCAATCACTGATATTCCAGAAATTCATTCGTGGTCAAGTTTGACCAATGTGATCTCAATTTTGGTCGCATAAATGTGATCATTGATAAATAAAAAATCTTGATGTCTCCACTCTTAATCACATAATTTTTCTTAAGAAACCATGTGTGTGACACTTTTTTTTCTTTTTTTGTTGATATGTTGCTTGAGAAACAAGTAAACAAATTAAGAATGAAGTACTAATTGGACACTAATTGCACAGGTACCACTATTTGATCAGATGGATGACAGGATGTTAGATGCAATATGTGAAAGGCTAAAACCAACTCTATGCACTCCAGGAACTTGCATAGTTCGCGAAGGCGACCCTGTCGACGAAATGCTCTTCATCGTTCGAGGACGTTTAGATTCTTGCACGACCAACGGTGGTAGAACTGGTTTTTTCAACACCTGCAGAATAAGCTCAGGCGACTTCTGCGGTGAAGAGCTTTTACCATGGGCCTTAGACCCTCGCCCGACTGCTGTGTTTCCTTCATCAACTCGCACAGTGAGAGCCATCACAGAAGTCGAAGCATTTGCACTCATTGCCGAGGATTTAAAGTTTGTAGCAGCACAATTCCGCCGGTTACATAGCAAACAACTGAGACAAACCTTTAGATTCTATTCACATCAGTGGAGGACATGGGCTGCATGTTTTATACAAGCAGCTTGGTTTCGGTATAAGAGAATGAAAGAGACAAATGAGGTTAAGGAAAAGGAGAATCTTATGATGATGTCAAATGTGAAATATTATGGAAATGATGATTCTCAATATTTCTCTGCACCTCTGCAGGTGCCAAAAGGATCAAGTTATTCAATGTATTCTGGAAAACTAGTAGGTAGTTTAAGGAGAGGAAGAAGCATGAGATATGGTGCTGAACTTGATATGCTTGGTACATTAAGGAAGCCTATTGAACCAGATTTTAATGATGATGATGATTAA

Protein sequence

>MS.gene24611.t1

MASVISRVVRFHDDLEKEKLQEGEESQMEMSAYEMRSEYKHGKDAINKPSSNGRGLSRVFSEDYDAGEILVFDPRGPRINLWNKIFLAACLISLFVDPLFFYLPVAKKEKCIDMSIGLEVSLTIIRTFVDAFYIIHIYIRFQTAYIAPSSRVSGRGELIIDSSKIASNYMKKEFWSDLVAALPLPQVLIWAVIPNIKGSEMIASRHVVRLVSIFQYLLRLYLIYPLSSKITKASGVMMEKAWAGAAYYLTLYMLASHVLGSTWYLLSIERQDECWKKACTLQYPHCQYHYLDCRSLSDPNRNAWLKSSNLSGLCDQNSHFFQFGIFYDAVTLEITSSNFLTKYYYCLWWGLRNLSSSGENLLTSTHVAEINFAVIVAILGLVLFALLIGNMQTYLQSTTIRLEEWRIRRTDTERWMHHRQLPRYLKENVRRHDQFRWVATRGVDEEAILRDLPVDLRRDIKRHLCLNLVRQVPLFDQMDDRMLDAICERLKPTLCTPGTCIVREGDPVDEMLFIVRGRLDSCTTNGGRTGFFNTCRISSGDFCGEELLPWALDPRPTAVFPSSTRTVRAITEVEAFALIAEDLKFVAAQFRRLHSKQLRQTFRFYSHQWRTWAACFIQAAWFRYKRMKETNEVKEKENLMMMSNVKYYGNDDSQYFSAPLQVPKGSSYSMYSGKLVGSLRRGRSMRYGAELDMLGTLRKPIEPDFNDDDD