AlfalfaGEDB | MS.gene92216

M. sativa cultivar XinJiangDaYe / MS.gene92216

KEGG: K01602
GO: -
PFAM: PF00101.23 PF12338.11

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92216.t1	XP_013447451.1	93.9	181	11	0	1	181	1	181	4.20E-94	354

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92216.t1	P07689	83.8	179	29	0	3	181	2	180	1.4e-85	317.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92216.t1	A0A072U6Q1	93.9	181	11	0	1	181	1	181	3.0e-94	354.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene92216	0.81138	7.21E-51	-1.69E-46
MS.gene049171	MS.gene92216	0.930685	1.14E-93	-1.69E-46
MS.gene049173	MS.gene92216	0.903064	5.10E-79	-1.69E-46
MS.gene049217	MS.gene92216	0.89227	1.85E-74	-1.69E-46
MS.gene049222	MS.gene92216	0.888167	7.51E-73	-1.69E-46
MS.gene049232	MS.gene92216	0.835871	1.30E-56	-1.69E-46
MS.gene049285	MS.gene92216	0.943694	7.58E-103	-1.69E-46
MS.gene049320	MS.gene92216	0.92942	7.13E-93	-1.69E-46
MS.gene04939	MS.gene92216	0.836067	1.16E-56	-1.69E-46
MS.gene049609	MS.gene92216	0.876638	1.19E-68	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene074249	MS.gene92216	PPI
MS.gene54465	MS.gene92216	PPI
MS.gene80966	MS.gene92216	PPI
MS.gene92216	MS.gene074248	PPI
MS.gene92216	MS.gene92218	PPI
MS.gene92216	MS.gene54468	PPI
MS.gene92216	MS.gene074567	PPI
MS.gene92216	MS.gene76908	PPI
MS.gene92216	MS.gene074568	PPI
MS.gene92216	MS.gene80971	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92216.t1	MTR_7g007120	94.152	171	10	0	11	181	11	181	1.23e-123	346
MS.gene92216.t1	MTR_7g007200	93.567	171	11	0	11	181	11	181	2.25e-123	345
MS.gene92216.t1	MTR_7g007220	94.152	171	10	0	11	181	11	181	2.27e-123	345
MS.gene92216.t1	MTR_7g007120	94.118	170	10	0	12	181	12	181	4.95e-123	344
MS.gene92216.t1	MTR_7g007120	93.567	171	11	0	11	181	11	181	6.37e-123	344
MS.gene92216.t1	MTR_7g007230	92.353	170	13	0	12	181	12	181	3.57e-120	337
MS.gene92216.t1	MTR_6g018310	83.799	179	28	1	4	181	2	180	7.16e-114	321
MS.gene92216.t1	MTR_6g018300	83.240	179	26	2	4	181	2	177	4.81e-111	314
MS.gene92216.t1	MTR_7g007210	94.156	154	9	0	11	164	11	164	1.65e-109	310
MS.gene92216.t1	MTR_4g127870	48.810	168	81	4	17	180	3	169	3.92e-58	180

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92216.t1	AT1G67090	70.330	182	49	2	1	181	1	178	6.21e-93	268
MS.gene92216.t1	AT5G38430	69.780	182	50	2	1	181	1	178	6.01e-92	266
MS.gene92216.t1	AT5G38430	69.780	182	50	2	1	181	1	178	6.01e-92	266
MS.gene92216.t1	AT5G38410	69.231	182	51	2	1	181	1	178	1.24e-91	265
MS.gene92216.t1	AT5G38420	69.231	182	51	2	1	181	1	178	3.70e-91	264
MS.gene92216.t1	AT5G38410	67.380	187	51	3	1	181	1	183	2.39e-89	259
MS.gene92216.t1	AT5G38410	66.484	182	49	3	1	181	1	171	1.02e-84	247
MS.gene92216.t1	AT1G67090	64.348	115	36	2	1	114	1	111	3.97e-45	145

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Find 49 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTGTAGTCACAGCTGAAG+AGG	0.597051	7.1:+87145446	None:intergenic
AACTTCTTCTTGCCAATAGG+AGG	0.515017	7.1:+87145122	None:intergenic
AAGAAGTTGATTACCTTATA+AGG	0.244592	7.1:-87145052	MS.gene92216:CDS
AAGTCACCAGGATACTATGA+TGG	0.574009	7.1:-87144839	MS.gene92216:CDS
AATTGTTCTCTGGTCAATGG+TGG	0.637841	7.1:+87145080	None:intergenic
ACCATTGACCAGAGAACAAT+TGG	0.397843	7.1:-87145078	MS.gene92216:CDS
ACTTCCATTACAAGCAATGG+TGG	0.610706	7.1:-87145327	MS.gene92216:CDS
AGCTGAAGAGGACATGATAG+AGG	0.561007	7.1:+87145458	None:intergenic
AGTTGATTACCTTATAAGGA+AGG	0.522099	7.1:-87145048	MS.gene92216:CDS
ATGATACGGACAAAGGCATC+AGG	0.443523	7.1:+87144725	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTTGATTACCTTATAAGGA+AGG	-	chr7.1:87145075-87145094	MS.gene92216:CDS	30.0%
ATTACTTCCATTACAAGCAA+TGG	-	chr7.1:87144793-87144812	MS.gene92216:CDS	30.0%
CTTTGTTGATCTTTGTAACT+GGG	+	chr7.1:87144771-87144790	None:intergenic	30.0%
GTTGATTACCTTATAAGGAA+GGG	-	chr7.1:87145076-87145095	MS.gene92216:CDS	30.0%
TCTTTGTTGATCTTTGTAAC+TGG	+	chr7.1:87144772-87144791	None:intergenic	30.0%
ACACCTAAAATTGCCCAAAA+GGG	+	chr7.1:87144979-87144998	None:intergenic	35.0%
ATTACCTTATAAGGAAGGGA+TGG	-	chr7.1:87145080-87145099	MS.gene92216:CDS	35.0%
TCAAACTTCTTCTTGCCAAT+AGG	+	chr7.1:87145007-87145026	None:intergenic	35.0%
TTACCTTATAAGGAAGGGAT+GGG	-	chr7.1:87145081-87145100	MS.gene92216:CDS	35.0%
AACTTCTTCTTGCCAATAGG+AGG	+	chr7.1:87145004-87145023	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	87144658	87145487	87144658	ID=MS.gene92216
chr7.1	mRNA	87144658	87145487	87144658	ID=MS.gene92216.t1;Parent=MS.gene92216
chr7.1	exon	87145308	87145487	87145308	ID=MS.gene92216.t1.exon1;Parent=MS.gene92216.t1
chr7.1	CDS	87145308	87145487	87145308	ID=cds.MS.gene92216.t1;Parent=MS.gene92216.t1
chr7.1	exon	87145016	87145150	87145016	ID=MS.gene92216.t1.exon2;Parent=MS.gene92216.t1
chr7.1	CDS	87145016	87145150	87145016	ID=cds.MS.gene92216.t1;Parent=MS.gene92216.t1
chr7.1	exon	87144658	87144888	87144658	ID=MS.gene92216.t1.exon3;Parent=MS.gene92216.t1
chr7.1	CDS	87144658	87144888	87144658	ID=cds.MS.gene92216.t1;Parent=MS.gene92216.t1

Gene Sequence

>MS.gene92216

ATGGCTTCCTCTATCATGTCCTCTTCAGCTGTGACTACAGTTAACCGTGCCTCTTCGGTACAATCTGGCGTGGCGGCTCCATTCGTTGGACTAAAGTCCATGGCTGGCTTCCCAGTTACAAAGATCAACAAAGACATTACTTCCATTACAAGCAATGGTGGAAGAGTAAACTGCATGCAGGTGAGAAAAAATTTATGACATGTCTGTAAACTGTTTTCATCTTATATTTTCATAAGCTCTTCAGGATAGTGTATGAAAACAGCTTATACGTACATAAGCACTTATAGATTCATTGGCAAAAGTACACAAGTTTGTTAACCCTTTTGGGCAATTTTAGGTGTGGCCTCCTATTGGCAAGAAGAAGTTTGAGACTCTTTCATACCTTCCACCATTGACCAGAGAACAATTGGCAAAAGAAGTTGATTACCTTATAAGGAAGGGATGGGTTGCTTGCTTGGAATTTGAGACCGAGGTCTAATATTACTTTACTTGCAATATCTTCTCAATATATATAATCGTTGTTTTGTCGCGACCAAGGTCACAGTCACAAATTTGTACTTAACATATGTTTGTTTTGATTTGTACTTGGTTACTTGCAGAAAGGATTTGTGTACCGTGAGAACCACAAGTCACCAGGATACTATGATGGACGTTACTGGACAATGTGGAAGTTGCCTTTGTTTGGAGCAACTGATGCTTCTCAAGTGTTGAAGGAGCTTGATGAAGCTATTGCTGCTTACCCTGATGCCTTTGTCCGTATCATCGGATTCGACAACGTTCGTCAAGTTCAATGCATCAGTTTCATTGCACACACACCTGCAGTCTACTAA

Protein sequence

>MS.gene92216.t1

MASSIMSSSAVTTVNRASSVQSGVAAPFVGLKSMAGFPVTKINKDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLTREQLAKEVDYLIRKGWVACLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPLFGATDASQVLKELDEAIAAYPDAFVRIIGFDNVRQVQCISFIAHTPAVY