AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene73819


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73819.t1 MTR_4g079750 97.568 370 9 0 1 370 1 370 0.0 754
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 93 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAATGACAAAAGAGATTT+TGG 0.179922 4.4:+31432623 MS.gene73819:CDS
TTTGGAGTCAGAAGTTTATA+AGG 0.209201 4.4:+31432641 MS.gene73819:CDS
CTGAGCCACAGCTAGAAAAT+AGG 0.255514 4.4:-31433931 None:intergenic
GTGCTAGACAAGTTCTTATA+AGG 0.269712 4.4:+31432466 MS.gene73819:CDS
CGCAGATAATGCGTGACAAT+TGG 0.343858 4.4:+31433658 MS.gene73819:CDS
GGAGTCTCTCCAGTCCATTT+TGG 0.347401 4.4:-31432381 None:intergenic
TTCCTTTACTACATTCACTA+TGG 0.352084 4.4:-31434499 None:intergenic
CCTTCATCATATGCATGAAA+TGG 0.356221 4.4:-31432811 None:intergenic
AACCAGCTTCCTTCAGTGTT+TGG 0.362900 4.4:-31435176 None:intergenic
CGAGTACTACTTGACTGATA+TGG 0.380852 4.4:+31435152 MS.gene73819:CDS
ACATTCACTATGGCTCTTGC+AGG 0.387189 4.4:-31434489 None:intergenic
GTTTGCTATGACAGATAATT+CGG 0.399971 4.4:+31434551 MS.gene73819:CDS
ACCTGTAGGACCTTTGACTT+TGG 0.401436 4.4:-31434657 None:intergenic
TCTAGCTGTGGCTCAGCATA+AGG 0.402145 4.4:+31433938 MS.gene73819:CDS
GAAAGCTGGTAAGACCAAAA+TGG 0.406231 4.4:+31432367 MS.gene73819:CDS
TGCTCTTCATCAATGTAAAC+AGG 0.408653 4.4:-31435113 None:intergenic
ACAAGATCAAATGATTTAGA+AGG 0.410624 4.4:-31434029 None:intergenic
TAAAATGGATACATGCAAAT+GGG 0.418740 4.4:+31433991 MS.gene73819:CDS
CTTCATAGCTACTAGCTTGA+AGG 0.422456 4.4:-31432341 None:intergenic
GTCAGAAGTTTATAAGGAGT+TGG 0.427742 4.4:+31432647 MS.gene73819:CDS
TCTTGTGTCTATTTCTTATG+TGG 0.429692 4.4:+31434046 MS.gene73819:CDS
TAGTGGTGGTGATGCCATGC+GGG 0.449233 4.4:-31432254 None:intergenic
ATAAAATGGATACATGCAAA+TGG 0.451046 4.4:+31433990 MS.gene73819:CDS
CCATTTCATGCATATGATGA+AGG 0.452780 4.4:+31432811 MS.gene73819:CDS
CAAGTAGTACTCGTCAAGAA+AGG 0.463853 4.4:-31435142 None:intergenic
TGTTGGTGCCTTTGTGGTAG+TGG 0.466508 4.4:-31432271 None:intergenic
AGGAAGCATTCCGTCTCCTT+CGG 0.475832 4.4:+31434517 MS.gene73819:CDS
GCCGTTATAGTCACGTGCCT+AGG 0.477144 4.4:-31435228 None:intergenic
GCATTCCGTCTCCTTCGGCC+TGG 0.478773 4.4:+31434522 MS.gene73819:CDS
TGAGCCACAGCTAGAAAATA+GGG 0.482232 4.4:-31433930 None:intergenic
CTAGACATTGGATGTTCTGT+GGG 0.504597 4.4:+31433741 MS.gene73819:CDS
CATTCACAAACATCTATGAT+TGG 0.507503 4.4:+31433711 MS.gene73819:CDS
GCCAAAGTCAAAGGTCCTAC+AGG 0.510737 4.4:+31434656 MS.gene73819:intron
ACGCCGTGTTGGTGCCTTTG+TGG 0.510870 4.4:-31432277 None:intergenic
TTATACTCTATCCTCAAGCT+TGG 0.513522 4.4:+31432444 MS.gene73819:CDS
AGCCATAGTGAATGTAGTAA+AGG 0.515798 4.4:+31434497 MS.gene73819:CDS
GTCATAGCAAACGTGCCTCC+AGG 0.518839 4.4:-31434540 None:intergenic
TAGCTATGAAGAAGGAAAGC+TGG 0.521816 4.4:+31432353 MS.gene73819:CDS
TTCATCAATGTAAACAGGAC+AGG 0.523632 4.4:-31435108 None:intergenic
TGCCTCCAGGCCGAAGGAGA+CGG 0.527581 4.4:-31434527 None:intergenic
CATTGACTTAGTAGCAGCCT+CGG 0.529201 4.4:-31433592 None:intergenic
CGAGGCTGCTACTAAGTCAA+TGG 0.529702 4.4:+31433593 MS.gene73819:CDS
CGCTTCTTCTACTGATGAAG+CGG 0.534196 4.4:-31433634 None:intergenic
CCGTTATAGTCACGTGCCTA+GGG 0.538523 4.4:-31435227 None:intergenic
TGAAGGGAATCTTACATGGC+TGG 0.540223 4.4:+31432828 MS.gene73819:CDS
AAGTAGTACTCGTCAAGAAA+GGG 0.541395 4.4:-31435141 None:intergenic
CCCTAGGCACGTGACTATAA+CGG 0.542913 4.4:+31435227 MS.gene73819:CDS
TTCATAGCTACTAGCTTGAA+GGG 0.550261 4.4:-31432340 None:intergenic
AGCTTGAGGATAGAGTATAA+AGG 0.550336 4.4:-31432441 None:intergenic
TAAAGATGAAATTACAATCA+GGG 0.551499 4.4:-31432698 None:intergenic
CTGGTAAGACCAAAATGGAC+TGG 0.551537 4.4:+31432372 MS.gene73819:CDS
TCACAATGACATTGGCCGTA+GGG 0.555452 4.4:-31433794 None:intergenic
TCTAGACATTGGATGTTCTG+TGG 0.556538 4.4:+31433740 MS.gene73819:CDS
GCTCGAACCATGCGAGAGAG+AGG 0.558206 4.4:-31432402 None:intergenic
TTGAAGGGAGGTTGTTGTGT+CGG 0.560578 4.4:-31432325 None:intergenic
AATCAGGGTATACTAAAGAC+TGG 0.564057 4.4:-31432683 None:intergenic
GACCAAACACTGAAGGAAGC+TGG 0.567832 4.4:+31435174 MS.gene73819:CDS
ACATGCAAATGGGGAAGACA+CGG 0.570127 4.4:+31434001 MS.gene73819:CDS
CAAGCTAGTAGCTATGAAGA+AGG 0.571992 4.4:+31432345 MS.gene73819:CDS
CCTTCTGCAGCCAAAGTCAA+AGG 0.572810 4.4:+31434647 MS.gene73819:intron
CATTTCATGCATATGATGAA+GGG 0.577373 4.4:+31432812 MS.gene73819:CDS
TTCCGTCTCCTTCGGCCTGG+AGG 0.580123 4.4:+31434525 MS.gene73819:CDS
ATTGGTGACATTCTAGACAT+TGG 0.582465 4.4:+31433729 MS.gene73819:CDS
AGAGACTCCTCTCTCTCGCA+TGG 0.582497 4.4:+31432395 MS.gene73819:CDS
GTTAAAACTCACAATGACAT+TGG 0.583152 4.4:-31433802 None:intergenic
ATGATGAAGGGAATCTTACA+TGG 0.591019 4.4:+31432824 MS.gene73819:CDS
ATAGGCAGCAGCAGAAGCCG+AGG 0.591142 4.4:+31433575 MS.gene73819:intron
ACCACCACGTGACGCCGTGT+TGG 0.604335 4.4:-31432288 None:intergenic
TCTTGCGGACAAGTTCCCTA+CGG 0.605513 4.4:+31433779 MS.gene73819:CDS
TATAGTCACGTGCCTAGGGT+TGG 0.610208 4.4:-31435223 None:intergenic
TGGTGCCTTTGTGGTAGTGG+TGG 0.612166 4.4:-31432268 None:intergenic
CAAGATGTTTCATTGAGGCA+CGG 0.614783 4.4:-31435253 None:intergenic
AGTAAGCTCAAGATTTCTTG+CGG 0.617617 4.4:+31433764 MS.gene73819:CDS
AAAATGGATACATGCAAATG+GGG 0.624426 4.4:+31433992 MS.gene73819:CDS
AATCAATTCTTACCAACCCT+AGG 0.624884 4.4:+31435211 MS.gene73819:CDS
AGTGGTGGTGATGCCATGCG+GGG 0.626878 4.4:-31432253 None:intergenic
TCTTCTACTGATGAAGCGGT+AGG 0.627521 4.4:-31433630 None:intergenic
CATGCAAATGGGGAAGACAC+GGG 0.629318 4.4:+31434002 MS.gene73819:CDS
TGATATGGACCAAACACTGA+AGG 0.631121 4.4:+31435167 MS.gene73819:CDS
GGCACCAACACGGCGTCACG+TGG 0.633755 4.4:+31432284 MS.gene73819:CDS
CAAACGTGCCTCCAGGCCGA+AGG 0.635743 4.4:-31434533 None:intergenic
TCACGTGGTGGTTCACGCTG+CGG 0.638308 4.4:+31432299 MS.gene73819:CDS
AATCCCAAGATGTTTCATTG+AGG 0.639944 4.4:-31435258 None:intergenic
GCGGGGAGATTAATGATGAG+AGG 0.645229 4.4:-31432236 None:intergenic
CTTGTCTAGCACCAAGCTTG+AGG 0.645836 4.4:-31432455 None:intergenic
GTAGTGGTGGTGATGCCATG+CGG 0.652417 4.4:-31432255 None:intergenic
TCATCATTAATCTCCCCGCA+TGG 0.655400 4.4:+31432240 MS.gene73819:CDS
ACCAACACGGCGTCACGTGG+TGG 0.659578 4.4:+31432287 MS.gene73819:CDS
CTCACAATGACATTGGCCGT+AGG 0.667491 4.4:-31433795 None:intergenic
CATCACCACCACTACCACAA+AGG 0.675272 4.4:+31432263 MS.gene73819:CDS
CTACCACAAAGGCACCAACA+CGG 0.688875 4.4:+31432274 MS.gene73819:CDS
GCTCAGCATAAGGAAAAGAG+CGG 0.692800 4.4:+31433948 MS.gene73819:CDS
ATAGCTACTAGCTTGAAGGG+AGG 0.713336 4.4:-31432337 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATCTTTAAAAGTAATAAAT+TGG - chr4.4:31433208-31433227 None:intergenic 10.0%
!! CTAGAAAAAATCCTATAAAA+TGG + chr4.4:31433976-31433995 MS.gene73819:CDS 20.0%
!! GGATATATGATTTAATGTAT+TGG - chr4.4:31434865-31434884 None:intergenic 20.0%
!! TAAAGATGAAATTACAATCA+GGG - chr4.4:31432701-31432720 None:intergenic 20.0%
!! TATGTATCAATTAATTCACA+TGG - chr4.4:31434382-31434401 None:intergenic 20.0%
!!! AGATCTTATGATATTTTCTA+TGG - chr4.4:31433542-31433561 None:intergenic 20.0%
!!! ATGGAAATGATAATCATTTT+TGG + chr4.4:31433500-31433519 MS.gene73819:intron 20.0%
!!! CATAATGAATTGAGATTTTA+TGG + chr4.4:31434974-31434993 MS.gene73819:intron 20.0%
!!! CATTTTATAGGATTTTTTCT+AGG - chr4.4:31433978-31433997 None:intergenic 20.0%
!!! TTTTTGTCAATGTTAATGAA+TGG + chr4.4:31432878-31432897 MS.gene73819:intron 20.0%
!!! TTTTTGTTTCTTTTGTTCTT+TGG + chr4.4:31433416-31433435 MS.gene73819:intron 20.0%
! AAGATCTTTCATGTAGTTTA+TGG + chr4.4:31435012-31435031 MS.gene73819:intron 25.0%
! ACAAGATCAAATGATTTAGA+AGG - chr4.4:31434032-31434051 None:intergenic 25.0%
! AGTATTAAGAGTTATGTTAC+AGG - chr4.4:31434928-31434947 None:intergenic 25.0%
! ATAAAATGGATACATGCAAA+TGG + chr4.4:31433990-31434009 MS.gene73819:CDS 25.0%
! ATATGATCAAGAAGAAAAGA+TGG - chr4.4:31434689-31434708 None:intergenic 25.0%
! CAAAAAACCACATATTACAT+TGG - chr4.4:31433402-31433421 None:intergenic 25.0%
! GATCTGTATTATATGATGAT+AGG + chr4.4:31433557-31433576 MS.gene73819:intron 25.0%
! GTAAAGATGAAATTACAATC+AGG - chr4.4:31432702-31432721 None:intergenic 25.0%
! GTTACTTCAATTTCCTAAAT+AGG - chr4.4:31433027-31433046 None:intergenic 25.0%
! TAAAATGGATACATGCAAAT+GGG + chr4.4:31433991-31434010 MS.gene73819:CDS 25.0%
! TAAACAAACTATTATGTGGA+TGG + chr4.4:31433481-31433500 MS.gene73819:intron 25.0%
! TAAAGATTTGTGTTTGTCAA+AGG + chr4.4:31433220-31433239 MS.gene73819:intron 25.0%
! TCGTTAAACAAACTATTATG+TGG + chr4.4:31433477-31433496 MS.gene73819:intron 25.0%
! TGATTAAACCCAAACATAAA+AGG - chr4.4:31433331-31433350 None:intergenic 25.0%
! TTACTGTTAACCACAATATA+GGG - chr4.4:31434751-31434770 None:intergenic 25.0%
! TTTACTGTTAACCACAATAT+AGG - chr4.4:31434752-31434771 None:intergenic 25.0%
!! AAATATTAGTCTCTAAACAG+TGG - chr4.4:31434146-31434165 None:intergenic 25.0%
!! AAATGTGTATTTTACTTCCT+AGG + chr4.4:31434257-31434276 MS.gene73819:intron 25.0%
!! AGATTTTCCAATGTAATATG+TGG + chr4.4:31433392-31433411 MS.gene73819:intron 25.0%
!! GAAAGATCTTTAATCAGTTT+TGG - chr4.4:31435002-31435021 None:intergenic 25.0%
!! TTTGCATGTATCCATTTTAT+AGG - chr4.4:31433990-31434009 None:intergenic 25.0%
AAAATGGATACATGCAAATG+GGG + chr4.4:31433992-31434011 MS.gene73819:CDS 30.0%
AAAGATGGAAAAATACCTGT+AGG - chr4.4:31434674-31434693 None:intergenic 30.0%
AAATGCACCTATGATTCAAA+TGG - chr4.4:31433445-31433464 None:intergenic 30.0%
AGAAAAGACCAAAAAGTGAA+AGG - chr4.4:31432724-31432743 None:intergenic 30.0%
ATAGTTGTAAAAATGTGCCT+TGG + chr4.4:31433252-31433271 MS.gene73819:intron 30.0%
ATGACATTAGTGTTTGTGAT+AGG - chr4.4:31434619-31434638 None:intergenic 30.0%
CATTCACAAACATCTATGAT+TGG + chr4.4:31433711-31433730 MS.gene73819:CDS 30.0%
CATTTCATGCATATGATGAA+GGG + chr4.4:31432812-31432831 MS.gene73819:CDS 30.0%
GAATCTTGCAATTGAAATCT+AGG + chr4.4:31434284-31434303 MS.gene73819:intron 30.0%
GGTATAAATTGTTGTCTAGT+AGG + chr4.4:31435033-31435052 MS.gene73819:intron 30.0%
GTCTGTTATCATTCATATCT+TGG - chr4.4:31433285-31433304 None:intergenic 30.0%
GTTAAAACTCACAATGACAT+TGG - chr4.4:31433805-31433824 None:intergenic 30.0%
GTTATCATTCATATCTTGGA+TGG - chr4.4:31433281-31433300 None:intergenic 30.0%
TACGATACTTGTACCTATTT+AGG + chr4.4:31433011-31433030 MS.gene73819:intron 30.0%
TAGACAAGTTCTTATAAGGT+TGG + chr4.4:31432470-31432489 MS.gene73819:intron 30.0%
TCATGAAACTGCATAAATTG+AGG - chr4.4:31434465-31434484 None:intergenic 30.0%
TGATTGATATGTTTGTTCCA+GGG + chr4.4:31433894-31433913 MS.gene73819:intron 30.0%
TGGTAACTGATTATCAAGAA+AGG - chr4.4:31432919-31432938 None:intergenic 30.0%
TTCCTTTACTACATTCACTA+TGG - chr4.4:31434502-31434521 None:intergenic 30.0%
TTGATTGATATGTTTGTTCC+AGG + chr4.4:31433893-31433912 MS.gene73819:intron 30.0%
TTGCACAACAAGTTTCAATA+TGG + chr4.4:31432527-31432546 MS.gene73819:intron 30.0%
! AAACAAAACCGAAAAAGTGT+TGG - chr4.4:31433142-31433161 None:intergenic 30.0%
! ATAGGTACAAGTATCGTATT+CGG - chr4.4:31433009-31433028 None:intergenic 30.0%
! GGAAATGACAAAAGAGATTT+TGG + chr4.4:31432623-31432642 MS.gene73819:CDS 30.0%
! TCTTGTGTCTATTTCTTATG+TGG + chr4.4:31434046-31434065 MS.gene73819:CDS 30.0%
! TTGTTTTCTTCATGTCTTGT+AGG + chr4.4:31435077-31435096 MS.gene73819:intron 30.0%
! TTTGGAGTCAGAAGTTTATA+AGG + chr4.4:31432641-31432660 MS.gene73819:CDS 30.0%
! TTTTCTATGGAATTTCAGCA+AGG - chr4.4:31433529-31433548 None:intergenic 30.0%
!! AACAAAACCGAAAAAGTGTT+GGG - chr4.4:31433141-31433160 None:intergenic 30.0%
!! CATCTTTACCTTTCACTTTT+TGG + chr4.4:31432713-31432732 MS.gene73819:intron 30.0%
!! GTTTGCTATGACAGATAATT+CGG + chr4.4:31434551-31434570 MS.gene73819:CDS 30.0%
AAGTAGTACTCGTCAAGAAA+GGG - chr4.4:31435144-31435163 None:intergenic 35.0%
AATCAATTCTTACCAACCCT+AGG + chr4.4:31435211-31435230 MS.gene73819:CDS 35.0%
AATCAGGGTATACTAAAGAC+TGG - chr4.4:31432686-31432705 None:intergenic 35.0%
AATTGCAAGATTCGTTTCCT+AGG - chr4.4:31434277-31434296 None:intergenic 35.0%
ACATTGATACATGTTGGACT+TGG + chr4.4:31433069-31433088 MS.gene73819:intron 35.0%
ACCAAAGAGGAACATATCTA+TGG - chr4.4:31432939-31432958 None:intergenic 35.0%
ACCATAGATATGTTCCTCTT+TGG + chr4.4:31432935-31432954 MS.gene73819:intron 35.0%
AGAAAAACAACATACCTTGG+AGG + chr4.4:31432601-31432620 MS.gene73819:CDS 35.0%
AGATATGTTCCTCTTTGGTT+TGG + chr4.4:31432940-31432959 MS.gene73819:intron 35.0%
AGCAAAGTGAGTAGAATCAA+TGG - chr4.4:31432500-31432519 None:intergenic 35.0%
AGCCATAGTGAATGTAGTAA+AGG + chr4.4:31434497-31434516 MS.gene73819:CDS 35.0%
AGCTTGAGGATAGAGTATAA+AGG - chr4.4:31432444-31432463 None:intergenic 35.0%
AGTAAGCTCAAGATTTCTTG+CGG + chr4.4:31433764-31433783 MS.gene73819:CDS 35.0%
ATGATGAAGGGAATCTTACA+TGG + chr4.4:31432824-31432843 MS.gene73819:CDS 35.0%
ATTCAACTACCAAACCAAAG+AGG - chr4.4:31432952-31432971 None:intergenic 35.0%
CCATTTCATGCATATGATGA+AGG + chr4.4:31432811-31432830 MS.gene73819:CDS 35.0%
CCTTCATCATATGCATGAAA+TGG - chr4.4:31432814-31432833 None:intergenic 35.0%
CTGAGAAAAACAACATACCT+TGG + chr4.4:31432598-31432617 MS.gene73819:CDS 35.0%
GAAAAACAACATACCTTGGA+GGG + chr4.4:31432602-31432621 MS.gene73819:CDS 35.0%
GATTGATATGTTTGTTCCAG+GGG + chr4.4:31433895-31433914 MS.gene73819:intron 35.0%
GCAGCATTCTACGAATTTAA+CGG - chr4.4:31434097-31434116 None:intergenic 35.0%
GCATGTTTCAACTGTATTGA+TGG + chr4.4:31432752-31432771 MS.gene73819:intron 35.0%
GTCAGAAGTTTATAAGGAGT+TGG + chr4.4:31432647-31432666 MS.gene73819:CDS 35.0%
GTGCTAGACAAGTTCTTATA+AGG + chr4.4:31432466-31432485 MS.gene73819:CDS 35.0%
TCATGTACATACCATACACA+AGG - chr4.4:31433870-31433889 None:intergenic 35.0%
TGCTCTTCATCAATGTAAAC+AGG - chr4.4:31435116-31435135 None:intergenic 35.0%
TGTTTGTGTCAATGCTTCAT+AGG - chr4.4:31432986-31433005 None:intergenic 35.0%
TTATACTCTATCCTCAAGCT+TGG + chr4.4:31432444-31432463 MS.gene73819:CDS 35.0%
TTCATCAATGTAAACAGGAC+AGG - chr4.4:31435111-31435130 None:intergenic 35.0%
TTGGCAACCATTTGAATCAT+AGG + chr4.4:31433435-31433454 MS.gene73819:intron 35.0%
! ATTGGTGACATTCTAGACAT+TGG + chr4.4:31433729-31433748 MS.gene73819:CDS 35.0%
! GATAGCTTTTCCCTATATTG+TGG + chr4.4:31434738-31434757 MS.gene73819:intron 35.0%
! GTTTCAACTGTATTGATGGA+AGG + chr4.4:31432756-31432775 MS.gene73819:intron 35.0%
! TGTAAAAGAAGCCTTGTGTA+TGG + chr4.4:31433856-31433875 MS.gene73819:intron 35.0%
! TTCATAGCTACTAGCTTGAA+GGG - chr4.4:31432343-31432362 None:intergenic 35.0%
! TTGCTGGACCTTTTATGTTT+GGG + chr4.4:31433320-31433339 MS.gene73819:intron 35.0%
! TTTGCTGGACCTTTTATGTT+TGG + chr4.4:31433319-31433338 MS.gene73819:intron 35.0%
!! AAAATGTCGGTGCTACATAA+TGG + chr4.4:31433107-31433126 MS.gene73819:intron 35.0%
!! ACACCATCACTCTAAAATGT+CGG + chr4.4:31433094-31433113 MS.gene73819:intron 35.0%
!! TGTTCTTCCCAACACTTTTT+CGG + chr4.4:31433131-31433150 MS.gene73819:intron 35.0%
!!! GGTTGATCAGTGTGTTTTTT+TGG + chr4.4:31432548-31432567 MS.gene73819:intron 35.0%
AACAACATACAGCTGAACGA+TGG + chr4.4:31434337-31434356 MS.gene73819:intron 40.0%
ACGAATTTAACGGAGGACTA+AGG - chr4.4:31434087-31434106 None:intergenic 40.0%
ATTGAAGTAACCACATGCGT+TGG + chr4.4:31433036-31433055 MS.gene73819:intron 40.0%
CAAGCTAGTAGCTATGAAGA+AGG + chr4.4:31432345-31432364 MS.gene73819:CDS 40.0%
CAAGTAGTACTCGTCAAGAA+AGG - chr4.4:31435145-31435164 None:intergenic 40.0%
CGAATTTAACGGAGGACTAA+GGG - chr4.4:31434086-31434105 None:intergenic 40.0%
CGAGTACTACTTGACTGATA+TGG + chr4.4:31435152-31435171 MS.gene73819:CDS 40.0%
CTAGACATTGGATGTTCTGT+GGG + chr4.4:31433741-31433760 MS.gene73819:CDS 40.0%
GAAAGCTGGTAAGACCAAAA+TGG + chr4.4:31432367-31432386 MS.gene73819:CDS 40.0%
GAATTTAACGGAGGACTAAG+GGG - chr4.4:31434085-31434104 None:intergenic 40.0%
GCATTCTACGAATTTAACGG+AGG - chr4.4:31434094-31434113 None:intergenic 40.0%
GTGTGGACATTGATACATGT+TGG + chr4.4:31433063-31433082 MS.gene73819:intron 40.0%
TAGCTATGAAGAAGGAAAGC+TGG + chr4.4:31432353-31432372 MS.gene73819:CDS 40.0%
TCTAGACATTGGATGTTCTG+TGG + chr4.4:31433740-31433759 MS.gene73819:CDS 40.0%
TGAGCCACAGCTAGAAAATA+GGG - chr4.4:31433933-31433952 None:intergenic 40.0%
TGATATGGACCAAACACTGA+AGG + chr4.4:31435167-31435186 MS.gene73819:CDS 40.0%
! CAGTCAAAAGACGTTTTTGC+TGG + chr4.4:31433304-31433323 MS.gene73819:intron 40.0%
! CGTTCAGCTGTATGTTGTTT+AGG - chr4.4:31434336-31434355 None:intergenic 40.0%
! CTTCATAGCTACTAGCTTGA+AGG - chr4.4:31432344-31432363 None:intergenic 40.0%
!! TCTTTTGTCATTTCCCTCCA+AGG - chr4.4:31432618-31432637 None:intergenic 40.0%
AACCAGCTTCCTTCAGTGTT+TGG - chr4.4:31435179-31435198 None:intergenic 45.0%
ACAACGACTATGCGTCTAGT+AGG - chr4.4:31434886-31434905 None:intergenic 45.0%
ACATGCAAATGGGGAAGACA+CGG + chr4.4:31434001-31434020 MS.gene73819:CDS 45.0%
ACATTCACTATGGCTCTTGC+AGG - chr4.4:31434492-31434511 None:intergenic 45.0%
CATATCTTGGATGGAAGCCA+AGG - chr4.4:31433272-31433291 None:intergenic 45.0%
CGCAGATAATGCGTGACAAT+TGG + chr4.4:31433658-31433677 MS.gene73819:CDS 45.0%
CGCTTCTTCTACTGATGAAG+CGG - chr4.4:31433637-31433656 None:intergenic 45.0%
CTGAGCCACAGCTAGAAAAT+AGG - chr4.4:31433934-31433953 None:intergenic 45.0%
CTGGTAAGACCAAAATGGAC+TGG + chr4.4:31432372-31432391 MS.gene73819:CDS 45.0%
GCTCAGCATAAGGAAAAGAG+CGG + chr4.4:31433948-31433967 MS.gene73819:CDS 45.0%
TCACAATGACATTGGCCGTA+GGG - chr4.4:31433797-31433816 None:intergenic 45.0%
TCATCATTAATCTCCCCGCA+TGG + chr4.4:31432240-31432259 MS.gene73819:CDS 45.0%
TCTTCTACTGATGAAGCGGT+AGG - chr4.4:31433633-31433652 None:intergenic 45.0%
TGAAGGGAATCTTACATGGC+TGG + chr4.4:31432828-31432847 MS.gene73819:CDS 45.0%
TTGAAGGGAGGTTGTTGTGT+CGG - chr4.4:31432328-31432347 None:intergenic 45.0%
! ACCTGTAGGACCTTTGACTT+TGG - chr4.4:31434660-31434679 None:intergenic 45.0%
! ATAGCTACTAGCTTGAAGGG+AGG - chr4.4:31432340-31432359 None:intergenic 45.0%
! GTTTAGGACTTGTGACTTGC+AGG - chr4.4:31434320-31434339 None:intergenic 45.0%
!! CATTGACTTAGTAGCAGCCT+CGG - chr4.4:31433595-31433614 None:intergenic 45.0%
!!! GCACCGACATTTTAGAGTGA+TGG - chr4.4:31433100-31433119 None:intergenic 45.0%
!!! GTCACCCTATTTTCTAGCTG+TGG + chr4.4:31433926-31433945 MS.gene73819:CDS 45.0%
CATCACCACCACTACCACAA+AGG + chr4.4:31432263-31432282 MS.gene73819:CDS 50.0%
CATGCAAATGGGGAAGACAC+GGG + chr4.4:31434002-31434021 MS.gene73819:CDS 50.0%
CCCTAGGCACGTGACTATAA+CGG + chr4.4:31435227-31435246 MS.gene73819:CDS 50.0%
CCGTTATAGTCACGTGCCTA+GGG - chr4.4:31435230-31435249 None:intergenic 50.0%
CCTTCTGCAGCCAAAGTCAA+AGG + chr4.4:31434647-31434666 MS.gene73819:intron 50.0%
CGAGGCTGCTACTAAGTCAA+TGG + chr4.4:31433593-31433612 MS.gene73819:CDS 50.0%
CTCACAATGACATTGGCCGT+AGG - chr4.4:31433798-31433817 None:intergenic 50.0%
CTTGTCTAGCACCAAGCTTG+AGG - chr4.4:31432458-31432477 None:intergenic 50.0%
GACCAAACACTGAAGGAAGC+TGG + chr4.4:31435174-31435193 MS.gene73819:CDS 50.0%
GCCAAAGTCAAAGGTCCTAC+AGG + chr4.4:31434656-31434675 MS.gene73819:intron 50.0%
GCGGGGAGATTAATGATGAG+AGG - chr4.4:31432239-31432258 None:intergenic 50.0%
TATAGTCACGTGCCTAGGGT+TGG - chr4.4:31435226-31435245 None:intergenic 50.0%
TCTAGCTGTGGCTCAGCATA+AGG + chr4.4:31433938-31433957 MS.gene73819:CDS 50.0%
TCTTGCGGACAAGTTCCCTA+CGG + chr4.4:31433779-31433798 MS.gene73819:CDS 50.0%
! CCTTTGACTTTGGCTGCAGA+AGG - chr4.4:31434650-31434669 None:intergenic 50.0%
! GGAGTCTCTCCAGTCCATTT+TGG - chr4.4:31432384-31432403 None:intergenic 50.0%
! TGTTGGTGCCTTTGTGGTAG+TGG - chr4.4:31432274-31432293 None:intergenic 50.0%
!! AGGAAGCATTCCGTCTCCTT+CGG + chr4.4:31434517-31434536 MS.gene73819:CDS 50.0%
!! CTACCACAAAGGCACCAACA+CGG + chr4.4:31432274-31432293 MS.gene73819:CDS 50.0%
AGAGACTCCTCTCTCTCGCA+TGG + chr4.4:31432395-31432414 MS.gene73819:CDS 55.0%
AGGGTGACATATCTAGCCCC+TGG - chr4.4:31433914-31433933 None:intergenic 55.0%
GCCGTTATAGTCACGTGCCT+AGG - chr4.4:31435231-31435250 None:intergenic 55.0%
GTCATAGCAAACGTGCCTCC+AGG - chr4.4:31434543-31434562 None:intergenic 55.0%
! GTAGTGGTGGTGATGCCATG+CGG - chr4.4:31432258-31432277 None:intergenic 55.0%
! TAGTGGTGGTGATGCCATGC+GGG - chr4.4:31432257-31432276 None:intergenic 55.0%
!! TGGTGCCTTTGTGGTAGTGG+TGG - chr4.4:31432271-31432290 None:intergenic 55.0%
ATAGGCAGCAGCAGAAGCCG+AGG + chr4.4:31433575-31433594 MS.gene73819:intron 60.0%
CCACACGACACCAACGCATG+TGG - chr4.4:31433049-31433068 None:intergenic 60.0%
GCTCGAACCATGCGAGAGAG+AGG - chr4.4:31432405-31432424 None:intergenic 60.0%
TCACGTGGTGGTTCACGCTG+CGG + chr4.4:31432299-31432318 MS.gene73819:CDS 60.0%
! ACGCCGTGTTGGTGCCTTTG+TGG - chr4.4:31432280-31432299 None:intergenic 60.0%
! AGTGGTGGTGATGCCATGCG+GGG - chr4.4:31432256-31432275 None:intergenic 60.0%
!! CCACATGCGTTGGTGTCGTG+TGG + chr4.4:31433046-31433065 MS.gene73819:intron 60.0%
ACCAACACGGCGTCACGTGG+TGG + chr4.4:31432287-31432306 MS.gene73819:CDS 65.0%
ACCACCACGTGACGCCGTGT+TGG - chr4.4:31432291-31432310 None:intergenic 65.0%
CAAACGTGCCTCCAGGCCGA+AGG - chr4.4:31434536-31434555 None:intergenic 65.0%
GCATTCCGTCTCCTTCGGCC+TGG + chr4.4:31434522-31434541 MS.gene73819:CDS 65.0%
TGCCTCCAGGCCGAAGGAGA+CGG - chr4.4:31434530-31434549 None:intergenic 65.0%
TTCCGTCTCCTTCGGCCTGG+AGG + chr4.4:31434525-31434544 MS.gene73819:CDS 65.0%
GGCACCAACACGGCGTCACG+TGG + chr4.4:31432284-31432303 MS.gene73819:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 31432210 31435266 31432210 ID=MS.gene73819
chr4.4 mRNA 31432210 31435266 31432210 ID=MS.gene73819.t1;Parent=MS.gene73819
chr4.4 exon 31432210 31432487 31432210 ID=MS.gene73819.t1.exon1;Parent=MS.gene73819.t1
chr4.4 CDS 31432210 31432487 31432210 ID=cds.MS.gene73819.t1;Parent=MS.gene73819.t1
chr4.4 exon 31432593 31432705 31432593 ID=MS.gene73819.t1.exon2;Parent=MS.gene73819.t1
chr4.4 CDS 31432593 31432705 31432593 ID=cds.MS.gene73819.t1;Parent=MS.gene73819.t1
chr4.4 exon 31432800 31432849 31432800 ID=MS.gene73819.t1.exon3;Parent=MS.gene73819.t1
chr4.4 CDS 31432800 31432849 31432800 ID=cds.MS.gene73819.t1;Parent=MS.gene73819.t1
chr4.4 exon 31433579 31433812 31433579 ID=MS.gene73819.t1.exon4;Parent=MS.gene73819.t1
chr4.4 CDS 31433579 31433812 31433579 ID=cds.MS.gene73819.t1;Parent=MS.gene73819.t1
chr4.4 exon 31433915 31434067 31433915 ID=MS.gene73819.t1.exon5;Parent=MS.gene73819.t1
chr4.4 CDS 31433915 31434067 31433915 ID=cds.MS.gene73819.t1;Parent=MS.gene73819.t1
chr4.4 exon 31434477 31434572 31434477 ID=MS.gene73819.t1.exon6;Parent=MS.gene73819.t1
chr4.4 CDS 31434477 31434572 31434477 ID=cds.MS.gene73819.t1;Parent=MS.gene73819.t1
chr4.4 exon 31434657 31434677 31434657 ID=MS.gene73819.t1.exon7;Parent=MS.gene73819.t1
chr4.4 CDS 31434657 31434677 31434657 ID=cds.MS.gene73819.t1;Parent=MS.gene73819.t1
chr4.4 exon 31435099 31435266 31435099 ID=MS.gene73819.t1.exon8;Parent=MS.gene73819.t1
chr4.4 CDS 31435099 31435266 31435099 ID=cds.MS.gene73819.t1;Parent=MS.gene73819.t1
Gene Sequence

>MS.gene73819

ATGGCTCTGTCTTCACAACTTCAGAACCTCTCATCATTAATCTCCCCGCATGGCATCACCACCACTACCACAAAGGCACCAACACGGCGTCACGTGGTGGTTCACGCTGCGGCTTCCGACACAACAACCTCCCTTCAAGCTAGTAGCTATGAAGAAGGAAAGCTGGTAAGACCAAAATGGACTGGAGAGACTCCTCTCTCTCGCATGGTTCGAGCTCTCATATCTTTCAAGCCTTTATACTCTATCCTCAAGCTTGGTGCTAGACAAGTTCTTATAAGGTTGGTTAACCATTGATTCTACTCACTTTGCTTCACATTTTGCACAACAAGTTTCAATATGGTTGATCAGTGTGTTTTTTTGGATGTGTTTGTAAATGCATGCAGTACAGCTGAGAAAAACAACATACCTTGGAGGGAAATGACAAAAGAGATTTTGGAGTCAGAAGTTTATAAGGAGTTGGATAGCATTCAAAACCAGTCTTTAGTATACCCTGATTGTAATTTCATCTTTACCTTTCACTTTTTGGTCTTTTCTTTGCACTTGCATGTTTCAACTGTATTGATGGAAGGACTGTTTGATTTACTATACAGATTATTTGAATCCATTTCATGCATATGATGAAGGGAATCTTACATGGCTGGTAATTAAGTGCTAATTCTTAACTTTACTTTTTGTCAATGTTAATGAATGGTTTCATTTGTTCACTCCTTTCTTGATAATCAGTTACCATAGATATGTTCCTCTTTGGTTTGGTAGTTGAATATGTTGTGTTGCCTATGAAGCATTGACACAAACACCGAATACGATACTTGTACCTATTTAGGAAATTGAAGTAACCACATGCGTTGGTGTCGTGTGGACATTGATACATGTTGGACTTGGACACACCATCACTCTAAAATGTCGGTGCTACATAATGGTTGTTCTTCCCAACACTTTTTCGGTTTTGTTTTGATATACTTGTTTTGCAAAGTTACTGCTAACTTTCACAAGTTCCAATTTATTACTTTTAAAGATTTGTGTTTGTCAAAGGTTACACATTATAGTTGTAAAAATGTGCCTTGGCTTCCATCCAAGATATGAATGATAACAGACAGTCAAAAGACGTTTTTGCTGGACCTTTTATGTTTGGGTTTAATCATGTGTACATTACTATCTGTTTATGCACATTTACAAATTATGAGATTTTCCAATGTAATATGTGGTTTTTTGTTTCTTTTGTTCTTTGGCAACCATTTGAATCATAGGTGCATTTTTTACTTGCTCTTCGTTAAACAAACTATTATGTGGATGGAAATGATAATCATTTTTGGCTTCCTTGCTGAAATTCCATAGAAAATATCATAAGATCTGTATTATATGATGATAGGCAGCAGCAGAAGCCGAGGCTGCTACTAAGTCAATGGCAAGACGAGCGATTCCTACCGCTTCATCAGTAGAAGAAGCGACGCAGATAATGCGTGACAATTGGCTTAATGCAATTGAACAACATCATCTACAGCATTCACAAACATCTATGATTGGTGACATTCTAGACATTGGATGTTCTGTGGGAGTAAGCTCAAGATTTCTTGCGGACAAGTTCCCTACGGCCAATGTCATTGTGAGTTTTAACGAATGCAATTGAAATTGTTCTGTCAACACTATGTAAAAGAAGCCTTGTGTATGGTATGTACATGATTTTTGATTGATATGTTTGTTCCAGGGGCTAGATATGTCACCCTATTTTCTAGCTGTGGCTCAGCATAAGGAAAAGAGCGGAACGCCTAGAAAAAATCCTATAAAATGGATACATGCAAATGGGGAAGACACGGGCTTGCCTTCTAAATCATTTGATCTTGTGTCTATTTCTTATGTGGTATGCATTTTTCTCCCCTTAGTCCTCCGTTAAATTCGTAGAATGCTGCAATGCACTTTTTTCTTATGTTCAAAACCACTGTTTAGAGACTAATATTTTTCAGTGTTCTTGCATTAAAACAATTGTGCATATTCAAGCTTGCAACACAATATACATGAAAATCATTTTTATAGAGAACAAGCAATTTGCAAATGTGTATTTTACTTCCTAGGAAACGAATCTTGCAATTGAAATCTAGGTGCTATCTTTCCTGCAAGTCACAAGTCCTAAACAACATACAGCTGAACGATGGCATCTTTTGAATGTATTTTCCATGTGAATTAATTGATACATAGATTTGATTGCTCTAACAGTATTTTTAACAAAATATTCAGTAGATTTGATTTTCTTGACTCCTCAATTTATGCAGTTTCATGAATGTCCTGCAAGAGCCATAGTGAATGTAGTAAAGGAAGCATTCCGTCTCCTTCGGCCTGGAGGCACGTTTGCTATGACAGATAATTCGGTAAATAAAATCATGATCACATTTTTTTCTTTCTTTTTATGCTCCTATCACAAACACTAATGTCATTAATATTGCCTTCTGCAGCCAAAGTCAAAGGTCCTACAGGTATTTTTCCATCTTTTCTTCTTGATCATATTTTTATAATCAATGCATTGAGTTTGTTTAGATAGCTTTTCCCTATATTGTGGTTAACAGTAAATATTAACATAATATGCATAAGTTAGCTCAAGAGCTAACTACATTTGACTCGTTTTTGATCTGCATAACTACATTTCAATGATAATATGAACCAATACATTAAATCATATATCCTACTAGACGCATAGTCGTTGTCACGTTGAAAATCACTTAGCCTGTAACATAACTCTTAATACTGCAGATTCTTTTCATTTTGAATATATCATAATGAATTGAGATTTTATGGATCCAAAACTGATTAAAGATCTTTCATGTAGTTTATGGTATAAATTGTTGTCTAGTAGGAACATCATCAAACTTGTTCATTTGTTTTCTTCATGTCTTGTAGGAGTTGTCTCCTGTCCTGTTTACATTGATGAAGAGCACAGAACCCTTTCTTGACGAGTACTACTTGACTGATATGGACCAAACACTGAAGGAAGCTGGTTTCGTGAACATAAAATCAATTCTTACCAACCCTAGGCACGTGACTATAACGGCTACCGTGCCTCAATGA

Protein sequence

>MS.gene73819.t1

MALSSQLQNLSSLISPHGITTTTTKAPTRRHVVVHAAASDTTTSLQASSYEEGKLVRPKWTGETPLSRMVRALISFKPLYSILKLGARQVLISTAEKNNIPWREMTKEILESEVYKELDSIQNQSLVYPDYYLNPFHAYDEGNLTWLAAAEAEAATKSMARRAIPTASSVEEATQIMRDNWLNAIEQHHLQHSQTSMIGDILDIGCSVGVSSRFLADKFPTANVIGLDMSPYFLAVAQHKEKSGTPRKNPIKWIHANGEDTGLPSKSFDLVSISYVFHECPARAIVNVVKEAFRLLRPGGTFAMTDNSPKSKVLQELSPVLFTLMKSTEPFLDEYYLTDMDQTLKEAGFVNIKSILTNPRHVTITATVPQ