Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22384.t1 | XP_013450018.1 | 99.2 | 123 | 1 | 0 | 1 | 123 | 1 | 123 | 9.80E-63 | 249.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22384.t1 | A0A072U3U4 | 99.2 | 123 | 1 | 0 | 1 | 123 | 1 | 123 | 7.1e-63 | 249.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene22384 | 0.830082 | 3.59E-55 | -1.69E-46 |
| MS.gene049217 | MS.gene22384 | 0.848908 | 4.54E-60 | -1.69E-46 |
| MS.gene049222 | MS.gene22384 | 0.802793 | 4.74E-49 | -1.69E-46 |
| MS.gene049285 | MS.gene22384 | 0.84404 | 9.67E-59 | -1.69E-46 |
| MS.gene049320 | MS.gene22384 | 0.849755 | 2.64E-60 | -1.69E-46 |
| MS.gene049425 | MS.gene22384 | -0.807531 | 4.83E-50 | -1.69E-46 |
| MS.gene049609 | MS.gene22384 | 0.811802 | 5.84E-51 | -1.69E-46 |
| MS.gene049805 | MS.gene22384 | 0.802837 | 4.64E-49 | -1.69E-46 |
| MS.gene050163 | MS.gene22384 | 0.831143 | 1.97E-55 | -1.69E-46 |
| MS.gene050165 | MS.gene22384 | 0.822082 | 2.87E-53 | -1.69E-46 |
| MS.gene050333 | MS.gene22384 | 0.855859 | 4.75E-62 | -1.69E-46 |
| MS.gene050504 | MS.gene22384 | 0.819899 | 9.12E-53 | -1.69E-46 |
| MS.gene050518 | MS.gene22384 | 0.826512 | 2.60E-54 | -1.69E-46 |
| MS.gene050612 | MS.gene22384 | 0.837892 | 3.98E-57 | -1.69E-46 |
| MS.gene050675 | MS.gene22384 | 0.812455 | 4.20E-51 | -1.69E-46 |
| MS.gene050699 | MS.gene22384 | 0.830888 | 2.28E-55 | -1.69E-46 |
| MS.gene050767 | MS.gene22384 | 0.800358 | 1.50E-48 | -1.69E-46 |
| MS.gene050770 | MS.gene22384 | 0.804053 | 2.60E-49 | -1.69E-46 |
| MS.gene050772 | MS.gene22384 | 0.841062 | 5.97E-58 | -1.69E-46 |
| MS.gene051228 | MS.gene22384 | 0.821079 | 4.89E-53 | -1.69E-46 |
| MS.gene051666 | MS.gene22384 | 0.80011 | 1.68E-48 | -1.69E-46 |
| MS.gene051694 | MS.gene22384 | 0.822986 | 1.77E-53 | -1.69E-46 |
| MS.gene051810 | MS.gene22384 | 0.837759 | 4.30E-57 | -1.69E-46 |
| MS.gene051858 | MS.gene22384 | 0.847835 | 8.99E-60 | -1.69E-46 |
| MS.gene052271 | MS.gene22384 | 0.805278 | 1.44E-49 | -1.69E-46 |
| MS.gene052379 | MS.gene22384 | 0.827058 | 1.93E-54 | -1.69E-46 |
| MS.gene052916 | MS.gene22384 | 0.802418 | 5.66E-49 | -1.69E-46 |
| MS.gene053009 | MS.gene22384 | 0.85711 | 2.04E-62 | -1.69E-46 |
| MS.gene053207 | MS.gene22384 | 0.800719 | 1.26E-48 | -1.69E-46 |
| MS.gene053213 | MS.gene22384 | 0.824772 | 6.73E-54 | -1.69E-46 |
| MS.gene053286 | MS.gene22384 | 0.818267 | 2.14E-52 | -1.69E-46 |
| MS.gene053322 | MS.gene22384 | 0.822966 | 1.79E-53 | -1.69E-46 |
| MS.gene053561 | MS.gene22384 | -0.830911 | 2.25E-55 | -1.69E-46 |
| MS.gene053632 | MS.gene22384 | 0.816629 | 5.01E-52 | -1.69E-46 |
| MS.gene053916 | MS.gene22384 | 0.809951 | 1.47E-50 | -1.69E-46 |
| MS.gene054642 | MS.gene22384 | 0.869047 | 4.15E-66 | -1.69E-46 |
| MS.gene054802 | MS.gene22384 | 0.801404 | 9.15E-49 | -1.69E-46 |
| MS.gene054804 | MS.gene22384 | 0.803888 | 2.81E-49 | -1.69E-46 |
| MS.gene054954 | MS.gene22384 | 0.817791 | 2.74E-52 | -1.69E-46 |
| MS.gene055206 | MS.gene22384 | 0.822112 | 2.82E-53 | -1.69E-46 |
| MS.gene055362 | MS.gene22384 | 0.839655 | 1.39E-57 | -1.69E-46 |
| MS.gene055397 | MS.gene22384 | 0.813149 | 2.96E-51 | -1.69E-46 |
| MS.gene055499 | MS.gene22384 | 0.8172 | 3.73E-52 | -1.69E-46 |
| MS.gene055502 | MS.gene22384 | 0.829848 | 4.09E-55 | -1.69E-46 |
| MS.gene055577 | MS.gene22384 | 0.809373 | 1.95E-50 | -1.69E-46 |
| MS.gene055636 | MS.gene22384 | 0.822944 | 1.81E-53 | -1.69E-46 |
| MS.gene055638 | MS.gene22384 | 0.823142 | 1.62E-53 | -1.69E-46 |
| MS.gene055722 | MS.gene22384 | 0.821801 | 3.33E-53 | -1.69E-46 |
| MS.gene05592 | MS.gene22384 | 0.847489 | 1.12E-59 | -1.69E-46 |
| MS.gene055956 | MS.gene22384 | -0.816376 | 5.71E-52 | -1.69E-46 |
| MS.gene056083 | MS.gene22384 | 0.8087 | 2.72E-50 | -1.69E-46 |
| MS.gene056374 | MS.gene22384 | 0.820307 | 7.35E-53 | -1.69E-46 |
| MS.gene056657 | MS.gene22384 | 0.834458 | 2.96E-56 | -1.69E-46 |
| MS.gene057129 | MS.gene22384 | 0.85137 | 9.28E-61 | -1.69E-46 |
| MS.gene057246 | MS.gene22384 | 0.80441 | 2.19E-49 | -1.69E-46 |
| MS.gene057331 | MS.gene22384 | 0.813895 | 2.03E-51 | -1.69E-46 |
| MS.gene057416 | MS.gene22384 | 0.837915 | 3.92E-57 | -1.69E-46 |
| MS.gene058323 | MS.gene22384 | 0.803253 | 3.81E-49 | -1.69E-46 |
| MS.gene058419 | MS.gene22384 | 0.857183 | 1.94E-62 | -1.69E-46 |
| MS.gene058544 | MS.gene22384 | 0.827314 | 1.67E-54 | -1.69E-46 |
| MS.gene058723 | MS.gene22384 | 0.839749 | 1.32E-57 | -1.69E-46 |
| MS.gene058773 | MS.gene22384 | 0.846518 | 2.07E-59 | -1.69E-46 |
| MS.gene059022 | MS.gene22384 | 0.834192 | 3.45E-56 | -1.69E-46 |
| MS.gene059023 | MS.gene22384 | 0.803566 | 3.28E-49 | -1.69E-46 |
| MS.gene059029 | MS.gene22384 | 0.854368 | 1.29E-61 | -1.69E-46 |
| MS.gene059536 | MS.gene22384 | 0.80425 | 2.36E-49 | -1.69E-46 |
| MS.gene059677 | MS.gene22384 | 0.851738 | 7.30E-61 | -1.69E-46 |
| MS.gene059718 | MS.gene22384 | 0.834943 | 2.24E-56 | -1.69E-46 |
| MS.gene059902 | MS.gene22384 | 0.856283 | 3.57E-62 | -1.69E-46 |
| MS.gene059960 | MS.gene22384 | 0.832049 | 1.18E-55 | -1.69E-46 |
| MS.gene060336 | MS.gene22384 | -0.818707 | 1.70E-52 | -1.69E-46 |
| MS.gene060337 | MS.gene22384 | -0.80761 | 4.65E-50 | -1.69E-46 |
| MS.gene060762 | MS.gene22384 | 0.805178 | 1.51E-49 | -1.69E-46 |
| MS.gene060818 | MS.gene22384 | 0.82542 | 4.73E-54 | -1.69E-46 |
| MS.gene06092 | MS.gene22384 | 0.841519 | 4.52E-58 | -1.69E-46 |
| MS.gene061150 | MS.gene22384 | 0.85294 | 3.32E-61 | -1.69E-46 |
| MS.gene061200 | MS.gene22384 | 0.813889 | 2.04E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22384.t1 | MTR_7g102930 | 99.187 | 123 | 1 | 0 | 1 | 123 | 1 | 123 | 1.10e-86 | 248 |
| MS.gene22384.t1 | MTR_0050s0130 | 95.161 | 124 | 5 | 1 | 1 | 123 | 1 | 124 | 5.64e-81 | 233 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22384.t1 | AT2G36835 | 65.000 | 120 | 40 | 1 | 4 | 123 | 7 | 124 | 8.99e-60 | 180 |
Find 33 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGGAGAGTGATGAATTT+TGG | 0.149153 | 7.3:+11215798 | None:intergenic |
| CTTAAGGCCAAGTAGTTTAA+TGG | 0.275626 | 7.3:+11215552 | None:intergenic |
| TGCAGCATCCAGACCCTATT+GGG | 0.277417 | 7.3:-11215645 | MS.gene22384:intron |
| AGACCCTATTGGGGATGGTT+TGG | 0.296622 | 7.3:-11215635 | MS.gene22384:CDS |
| GACCCTATTGGGGATGGTTT+GGG | 0.297893 | 7.3:-11215634 | MS.gene22384:CDS |
| TCCCAAGCTGCTTGAGTTCT+CGG | 0.339699 | 7.3:+11214227 | None:intergenic |
| TTGCAGCATCCAGACCCTAT+TGG | 0.343546 | 7.3:-11215646 | MS.gene22384:intron |
| TTCTGAGAAACGCGAAGAAT+TGG | 0.346064 | 7.3:+11215781 | None:intergenic |
| CATTAAACTACTTGGCCTTA+AGG | 0.356280 | 7.3:-11215551 | MS.gene22384:intron |
| TTAAGGCCAAGTAGTTTAAT+GGG | 0.393226 | 7.3:+11215553 | None:intergenic |
| TCACCCAAACCATCCCCAAT+AGG | 0.399609 | 7.3:+11215631 | None:intergenic |
| GGAAATTGCATAATCTGAAA+AGG | 0.409482 | 7.3:+11215756 | None:intergenic |
| TGCTTGAGTTCTCGGCCAAT+TGG | 0.417383 | 7.3:+11214235 | None:intergenic |
| TGACCAGGTATGATGCATTC+AGG | 0.426379 | 7.3:+11215583 | None:intergenic |
| GCCGAGAACTCAAGCAGCTT+GGG | 0.432988 | 7.3:-11214228 | MS.gene22384:CDS |
| CACCCAAACCATCCCCAATA+GGG | 0.451205 | 7.3:+11215632 | None:intergenic |
| CGTTTCAAAACGACGTGCCA+TGG | 0.478244 | 7.3:-11215852 | MS.gene22384:CDS |
| AAACCATCCCCAATAGGGTC+TGG | 0.478724 | 7.3:+11215637 | None:intergenic |
| GGCCGAGAACTCAAGCAGCT+TGG | 0.483388 | 7.3:-11214229 | MS.gene22384:CDS |
| GTTACTCCCATTAAACTACT+TGG | 0.493644 | 7.3:-11215559 | MS.gene22384:CDS |
| GAAATTGCATAATCTGAAAA+GGG | 0.505297 | 7.3:+11215757 | None:intergenic |
| AATTTCAGGTCAACTTCGAT+AGG | 0.544920 | 7.3:+11214265 | None:intergenic |
| AAAGAGAGATACCCTCATGA+TGG | 0.547213 | 7.3:+11215735 | None:intergenic |
| ATTATGCAATTTCCATCATG+AGG | 0.549550 | 7.3:-11215747 | MS.gene22384:CDS |
| CATCCAGACCCTATTGGGGA+TGG | 0.565712 | 7.3:-11215640 | MS.gene22384:CDS |
| GGTCCTGAATGCATCATACC+TGG | 0.566073 | 7.3:-11215586 | MS.gene22384:CDS |
| GACGCTATAGTTGAAGCAGC+TGG | 0.589763 | 7.3:-11215607 | MS.gene22384:CDS |
| TTAATGGGAGTAACTTGACC+AGG | 0.605934 | 7.3:+11215568 | None:intergenic |
| GAAGAAGATGAAGCTCTCCA+TGG | 0.611826 | 7.3:+11215835 | None:intergenic |
| GCAGCATCCAGACCCTATTG+GGG | 0.632339 | 7.3:-11215644 | MS.gene22384:intron |
| AGAACTCAAGCAGCTTGGGA+AGG | 0.633744 | 7.3:-11214224 | MS.gene22384:intron |
| TTATGCAATTTCCATCATGA+GGG | 0.641636 | 7.3:-11215746 | MS.gene22384:intron |
| GCAGGTCATGGATGACGCTG+TGG | 0.682727 | 7.3:-11213372 | MS.gene22384:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAATTTTTTTTTTTTTT+TGG | - | chr7.3:11213530-11213549 | MS.gene22384:intron | 0.0% |
| !!! | AATAGTTTACTTTTTTTTTT+TGG | - | chr7.3:11214255-11214274 | MS.gene22384:CDS | 10.0% |
| !! | TAAGATTCAAAATATTCTTA+TGG | + | chr7.3:11213999-11214018 | None:intergenic | 15.0% |
| !!! | AAATTTCTAAAATAAAAGTG+TGG | + | chr7.3:11215477-11215496 | None:intergenic | 15.0% |
| !!! | TTGTAATTTTTAGTGAAAAT+AGG | + | chr7.3:11214552-11214571 | None:intergenic | 15.0% |
| !! | AAACTAAACATAAACTACAA+TGG | + | chr7.3:11214807-11214826 | None:intergenic | 20.0% |
| !! | AACAATTTCTTAAACCAAAT+AGG | + | chr7.3:11214515-11214534 | None:intergenic | 20.0% |
| !! | AACTAAACATAAACTACAAT+GGG | + | chr7.3:11214806-11214825 | None:intergenic | 20.0% |
| !! | ACTAATAACATATTCACATT+GGG | - | chr7.3:11214128-11214147 | MS.gene22384:intron | 20.0% |
| !! | CAAAAATTGAAACAAGAAAT+AGG | + | chr7.3:11213682-11213701 | None:intergenic | 20.0% |
| !! | TACTAATAACATATTCACAT+TGG | - | chr7.3:11214127-11214146 | MS.gene22384:intron | 20.0% |
| !!! | CATATTTGTTTAATGCTTTT+TGG | - | chr7.3:11213897-11213916 | MS.gene22384:intron | 20.0% |
| !!! | TCTTTAGAAATACTTTGTTT+TGG | - | chr7.3:11214862-11214881 | MS.gene22384:intron | 20.0% |
| ! | AAACAATCAATATTGCTACA+AGG | - | chr7.3:11215169-11215188 | MS.gene22384:intron | 25.0% |
| ! | AATCATACAACTCAAAAACT+TGG | - | chr7.3:11214407-11214426 | MS.gene22384:intron | 25.0% |
| ! | ACATGAAAAGACATGATAAT+AGG | + | chr7.3:11214778-11214797 | None:intergenic | 25.0% |
| ! | ACTAAACATAAACTACAATG+GGG | + | chr7.3:11214805-11214824 | None:intergenic | 25.0% |
| ! | ATAAATCACGATGTTGTTAA+AGG | - | chr7.3:11215388-11215407 | MS.gene22384:intron | 25.0% |
| ! | ATAACACTATGGTAAAAGAT+AGG | + | chr7.3:11215423-11215442 | None:intergenic | 25.0% |
| ! | ATTAATATCAAAAGATGAGC+AGG | + | chr7.3:11215729-11215748 | None:intergenic | 25.0% |
| ! | CTAATAACATATTCACATTG+GGG | - | chr7.3:11214129-11214148 | MS.gene22384:intron | 25.0% |
| ! | GAAAACTTGAACGAAAATAA+TGG | + | chr7.3:11213508-11213527 | None:intergenic | 25.0% |
| ! | GAAATTGCATAATCTGAAAA+GGG | + | chr7.3:11213451-11213470 | None:intergenic | 25.0% |
| ! | TAATAACATATTCACATTGG+GGG | - | chr7.3:11214130-11214149 | MS.gene22384:intron | 25.0% |
| ! | TATAACTGAAATTAACCAAC+CGG | + | chr7.3:11215699-11215718 | None:intergenic | 25.0% |
| ! | TATGTAGGTAAGATACAAAA+AGG | + | chr7.3:11215013-11215032 | None:intergenic | 25.0% |
| ! | TCACATACATGATATCAAAA+GGG | - | chr7.3:11214670-11214689 | MS.gene22384:intron | 25.0% |
| ! | TTCTTCAAATCTTTCAAAAC+AGG | + | chr7.3:11214601-11214620 | None:intergenic | 25.0% |
| !! | ATTTTCTATGCAAGTTATCT+AGG | + | chr7.3:11215141-11215160 | None:intergenic | 25.0% |
| !! | CACTTCAACATTTTTCATTT+TGG | - | chr7.3:11214895-11214914 | MS.gene22384:intron | 25.0% |
| !! | GATAACTTGCATAGAAAATT+AGG | - | chr7.3:11215142-11215161 | MS.gene22384:intron | 25.0% |
| !! | TGCTCATCTTTTGATATTAA+TGG | - | chr7.3:11215728-11215747 | MS.gene22384:intron | 25.0% |
| !! | TTTTGAATCTTACTGCAATT+TGG | - | chr7.3:11214007-11214026 | MS.gene22384:intron | 25.0% |
| !! | TTTTTCATTCAAGGTAAACA+TGG | + | chr7.3:11215322-11215341 | None:intergenic | 25.0% |
| !!! | GTGATTTTTTATCTTCTCAA+TGG | + | chr7.3:11213977-11213996 | None:intergenic | 25.0% |
| !!! | TGGATTTATTTATTTTTGCC+TGG | - | chr7.3:11215672-11215691 | MS.gene22384:intron | 25.0% |
| !!! | TTTTCATTTTGGCTTCTTAT+TGG | - | chr7.3:11214906-11214925 | MS.gene22384:intron | 25.0% |
| AACAAGAAATAGGTACCTTA+AGG | + | chr7.3:11213672-11213691 | None:intergenic | 30.0% | |
| AATAGGTCTTGAGATTGATA+AGG | + | chr7.3:11214498-11214517 | None:intergenic | 30.0% | |
| AATTTGTCCTCTCAAATTTG+CGG | - | chr7.3:11214454-11214473 | MS.gene22384:intron | 30.0% | |
| ATAACTGAAATTAACCAACC+GGG | + | chr7.3:11215698-11215717 | None:intergenic | 30.0% | |
| ATTATGCAATTTCCATCATG+AGG | - | chr7.3:11213458-11213477 | MS.gene22384:intron | 30.0% | |
| ATTTCCGTTGTTCAATTATC+AGG | + | chr7.3:11214344-11214363 | None:intergenic | 30.0% | |
| CAGTGAATTTGCAAATATGT+TGG | - | chr7.3:11215531-11215550 | MS.gene22384:intron | 30.0% | |
| CATAATTCAATGTAACTGCA+TGG | - | chr7.3:11213812-11213831 | MS.gene22384:intron | 30.0% | |
| CTAAACATAAACTACAATGG+GGG | + | chr7.3:11214804-11214823 | None:intergenic | 30.0% | |
| CTCACATACATGATATCAAA+AGG | - | chr7.3:11214669-11214688 | MS.gene22384:intron | 30.0% | |
| CTCCATTTCCAAAAATACAA+GGG | + | chr7.3:11215207-11215226 | None:intergenic | 30.0% | |
| GGAAATTGCATAATCTGAAA+AGG | + | chr7.3:11213452-11213471 | None:intergenic | 30.0% | |
| GTTATTAGTACGAACAAACA+AGG | + | chr7.3:11214117-11214136 | None:intergenic | 30.0% | |
| TATCAATCTCAAGACCTATT+TGG | - | chr7.3:11214498-11214517 | MS.gene22384:intron | 30.0% | |
| TCTCCATTTCCAAAAATACA+AGG | + | chr7.3:11215208-11215227 | None:intergenic | 30.0% | |
| TGAAAAGACATGATAATAGG+AGG | + | chr7.3:11214775-11214794 | None:intergenic | 30.0% | |
| TGATAATTGAACAACGGAAA+TGG | - | chr7.3:11214343-11214362 | MS.gene22384:intron | 30.0% | |
| TGTATCTTACCTACATACAA+GGG | - | chr7.3:11215016-11215035 | MS.gene22384:intron | 30.0% | |
| TTAAGGCCAAGTAGTTTAAT+GGG | + | chr7.3:11213655-11213674 | None:intergenic | 30.0% | |
| TTATGCAATTTCCATCATGA+GGG | - | chr7.3:11213459-11213478 | MS.gene22384:intron | 30.0% | |
| TTGTATCTTACCTACATACA+AGG | - | chr7.3:11215015-11215034 | MS.gene22384:intron | 30.0% | |
| TTTCCGTTGTTCAATTATCA+GGG | + | chr7.3:11214343-11214362 | None:intergenic | 30.0% | |
| ! | AATTGGAGAGTGATGAATTT+TGG | + | chr7.3:11213410-11213429 | None:intergenic | 30.0% |
| ! | ACTAAAACCATGAAGCATTT+AGG | + | chr7.3:11213948-11213967 | None:intergenic | 30.0% |
| ! | ATTGGAGAGTGATGAATTTT+GGG | + | chr7.3:11213409-11213428 | None:intergenic | 30.0% |
| ! | CAACAAAAGCATAGAACAAT+GGG | + | chr7.3:11215583-11215602 | None:intergenic | 30.0% |
| ! | CAATTGGTTCCAAAAATTTC+AGG | + | chr7.3:11214957-11214976 | None:intergenic | 30.0% |
| ! | TATATGTGCCCTTGTATTTT+TGG | - | chr7.3:11215196-11215215 | MS.gene22384:intron | 30.0% |
| ! | TCAACAAAAGCATAGAACAA+TGG | + | chr7.3:11215584-11215603 | None:intergenic | 30.0% |
| ! | TCAAGGTAAACATGGTATTT+TGG | + | chr7.3:11215314-11215333 | None:intergenic | 30.0% |
| !! | GTTTAATGCTTTTTGGATCA+TGG | - | chr7.3:11213904-11213923 | MS.gene22384:intron | 30.0% |
| !! | TGCTTGATGGTATTGATATT+TGG | + | chr7.3:11214383-11214402 | None:intergenic | 30.0% |
| !! | TTTGCTACTTTGTTATCACA+AGG | + | chr7.3:11215248-11215267 | None:intergenic | 30.0% |
| !!! | CTGAAATTTTTGGAACCAAT+TGG | - | chr7.3:11214955-11214974 | MS.gene22384:intron | 30.0% |
| AAAGACATGATAATAGGAGG+AGG | + | chr7.3:11214772-11214791 | None:intergenic | 35.0% | |
| AAGCACAGACACATACAATA+CGG | - | chr7.3:11213755-11213774 | MS.gene22384:intron | 35.0% | |
| AGTTGTTCCTAAATGCTTCA+TGG | - | chr7.3:11213938-11213957 | MS.gene22384:intron | 35.0% | |
| ATCACGATGTTGTTAAAGGT+CGG | - | chr7.3:11215392-11215411 | MS.gene22384:intron | 35.0% | |
| ATTTGTCCTCTCAAATTTGC+GGG | - | chr7.3:11214455-11214474 | MS.gene22384:intron | 35.0% | |
| CATACATGATATCAAAAGGG+TGG | - | chr7.3:11214673-11214692 | MS.gene22384:intron | 35.0% | |
| CCAATATTACCCTTGTATGT+AGG | + | chr7.3:11215028-11215047 | None:intergenic | 35.0% | |
| CCTACATACAAGGGTAATAT+TGG | - | chr7.3:11215025-11215044 | MS.gene22384:intron | 35.0% | |
| CTTAAGGCCAAGTAGTTTAA+TGG | + | chr7.3:11213656-11213675 | None:intergenic | 35.0% | |
| GCAAAGTCTACATAACACTA+TGG | + | chr7.3:11215434-11215453 | None:intergenic | 35.0% | |
| GGAAACAAAGTGAAACAAGA+TGG | + | chr7.3:11214580-11214599 | None:intergenic | 35.0% | |
| GTCTATGAAAACCATGAAGA+AGG | - | chr7.3:11214058-11214077 | MS.gene22384:intron | 35.0% | |
| GTTACTCCCATTAAACTACT+TGG | - | chr7.3:11213646-11213665 | MS.gene22384:intron | 35.0% | |
| TGGATTTGAATGCTTAGAGT+TGG | - | chr7.3:11215551-11215570 | MS.gene22384:intron | 35.0% | |
| TGTATGATTACTGTGCTTGA+TGG | + | chr7.3:11214396-11214415 | None:intergenic | 35.0% | |
| TTAGAATTGCATGTCTGAAC+TGG | + | chr7.3:11215770-11215789 | None:intergenic | 35.0% | |
| TTCCCCTGATAATTGAACAA+CGG | - | chr7.3:11214337-11214356 | MS.gene22384:intron | 35.0% | |
| TTCCGTTGTTCAATTATCAG+GGG | + | chr7.3:11214342-11214361 | None:intergenic | 35.0% | |
| ! | AATTTCAGGTCAACTTCGAT+AGG | + | chr7.3:11214943-11214962 | None:intergenic | 35.0% |
| ! | CGAAGTTGACCTGAAATTTT+TGG | - | chr7.3:11214945-11214964 | MS.gene22384:intron | 35.0% |
| ! | GAACAAACAAGGATTTTGCT+AGG | + | chr7.3:11214106-11214125 | None:intergenic | 35.0% |
| ! | TACTTTTAACGAAGTAGCAG+CGG | + | chr7.3:11214192-11214211 | None:intergenic | 35.0% |
| !! | CATTAAACTACTTGGCCTTA+AGG | - | chr7.3:11213654-11213673 | MS.gene22384:intron | 35.0% |
| !! | GAGTGATGAATTTTGGGTAT+TGG | + | chr7.3:11213403-11213422 | None:intergenic | 35.0% |
| !! | TCAATTTGCTACAATGCTGT+TGG | + | chr7.3:11215345-11215364 | None:intergenic | 35.0% |
| !!! | TGCCCTTGTATTTTTGGAAA+TGG | - | chr7.3:11215202-11215221 | MS.gene22384:intron | 35.0% |
| !!! | TGCTGTTGGTTTTTCATTCA+AGG | + | chr7.3:11215331-11215350 | None:intergenic | 35.0% |
| !!! | TTATTTATTTTTGCCTGGCC+CGG | - | chr7.3:11215677-11215696 | MS.gene22384:intron | 35.0% |
| !!! | TTTTGGCTTCTTATTGGAAC+AGG | - | chr7.3:11214912-11214931 | MS.gene22384:intron | 35.0% |
| !!! | TTTTTGGTGTTTGTGATTGC+TGG | - | chr7.3:11214271-11214290 | MS.gene22384:CDS | 35.0% |
| AAAGAGAGATACCCTCATGA+TGG | + | chr7.3:11213473-11213492 | None:intergenic | 40.0% | |
| ACACATACAATACGGACATG+TGG | - | chr7.3:11213763-11213782 | MS.gene22384:intron | 40.0% | |
| CATATGTGCAACCTTCTTCA+TGG | + | chr7.3:11214072-11214091 | None:intergenic | 40.0% | |
| CTGTGCTTCATAGTTGAAAC+AGG | + | chr7.3:11213743-11213762 | None:intergenic | 40.0% | |
| GAATATCCCGCAAATTTGAG+AGG | + | chr7.3:11214464-11214483 | None:intergenic | 40.0% | |
| TCAATGTAACTGCATGGTGT+CGG | - | chr7.3:11213818-11213837 | MS.gene22384:intron | 40.0% | |
| TTAATGGGAGTAACTTGACC+AGG | + | chr7.3:11213640-11213659 | None:intergenic | 40.0% | |
| ! | AGGAGGAAAAACAGCATTGA+TGG | + | chr7.3:11214755-11214774 | None:intergenic | 40.0% |
| ! | ATATCGCTGTTGCTTGTGTT+TGG | - | chr7.3:11215652-11215671 | MS.gene22384:intron | 40.0% |
| ! | GCTGCTACTTCGTTAAAAGT+AGG | - | chr7.3:11214191-11214210 | MS.gene22384:intron | 40.0% |
| ! | TTCTGAGAAACGCGAAGAAT+TGG | + | chr7.3:11213427-11213446 | None:intergenic | 40.0% |
| !! | AGCACGACACTTTTGATTGA+AGG | + | chr7.3:11213876-11213895 | None:intergenic | 40.0% |
| !! | CACTTGATAGTGATGAACTG+TGG | - | chr7.3:11215083-11215102 | MS.gene22384:intron | 40.0% |
| !! | TGTAGTTATTTTGTGCACGC+AGG | - | chr7.3:11215815-11215834 | MS.gene22384:CDS | 40.0% |
| AGGGTGGTCATTGTTGTAAC+AGG | - | chr7.3:11214689-11214708 | MS.gene22384:intron | 45.0% | |
| ATTCACATTGGGGGAATGTC+TGG | - | chr7.3:11214139-11214158 | MS.gene22384:intron | 45.0% | |
| CATGTCTGAACTGGAGATGT+CGG | + | chr7.3:11215761-11215780 | None:intergenic | 45.0% | |
| GAAGAAGATGAAGCTCTCCA+TGG | + | chr7.3:11213373-11213392 | None:intergenic | 45.0% | |
| GCTTCTTATTGGAACAGGTC+TGG | - | chr7.3:11214917-11214936 | MS.gene22384:intron | 45.0% | |
| GGATTTGTGAGCAAAGCAAC+TGG | + | chr7.3:11215456-11215475 | None:intergenic | 45.0% | |
| GGGTAATATTGGCACACTTC+TGG | - | chr7.3:11215036-11215055 | MS.gene22384:intron | 45.0% | |
| GGGTGGTCATTGTTGTAACA+GGG | - | chr7.3:11214690-11214709 | MS.gene22384:intron | 45.0% | |
| GGTGGTCATTGTTGTAACAG+GGG | - | chr7.3:11214691-11214710 | MS.gene22384:intron | 45.0% | |
| TGACCAGGTATGATGCATTC+AGG | + | chr7.3:11213625-11213644 | None:intergenic | 45.0% | |
| ! | TATTTTGTGCACGCAGGTCA+TGG | - | chr7.3:11215821-11215840 | MS.gene22384:CDS | 45.0% |
| AAACCATCCCCAATAGGGTC+TGG | + | chr7.3:11213571-11213590 | None:intergenic | 50.0% | |
| AGAACTCAAGCAGCTTGGGA+AGG | - | chr7.3:11214981-11215000 | MS.gene22384:intron | 50.0% | |
| AGACCCTATTGGGGATGGTT+TGG | - | chr7.3:11213570-11213589 | MS.gene22384:intron | 50.0% | |
| AGTAGCAGCGGTCGAGATTT+AGG | + | chr7.3:11214180-11214199 | None:intergenic | 50.0% | |
| CACCCAAACCATCCCCAATA+GGG | + | chr7.3:11213576-11213595 | None:intergenic | 50.0% | |
| CGTTTCAAAACGACGTGCCA+TGG | - | chr7.3:11213353-11213372 | MS.gene22384:CDS | 50.0% | |
| GACCCTATTGGGGATGGTTT+GGG | - | chr7.3:11213571-11213590 | MS.gene22384:intron | 50.0% | |
| GACGCTATAGTTGAAGCAGC+TGG | - | chr7.3:11213598-11213617 | MS.gene22384:intron | 50.0% | |
| GGTCCTGAATGCATCATACC+TGG | - | chr7.3:11213619-11213638 | MS.gene22384:intron | 50.0% | |
| TCACCCAAACCATCCCCAAT+AGG | + | chr7.3:11213577-11213596 | None:intergenic | 50.0% | |
| TCCCAAGCTGCTTGAGTTCT+CGG | + | chr7.3:11214981-11215000 | None:intergenic | 50.0% | |
| TGAAATTAACCAACCGGGCC+AGG | + | chr7.3:11215693-11215712 | None:intergenic | 50.0% | |
| TGCAGCATCCAGACCCTATT+GGG | - | chr7.3:11213560-11213579 | MS.gene22384:intron | 50.0% | |
| TGCTTGAGTTCTCGGCCAAT+TGG | + | chr7.3:11214973-11214992 | None:intergenic | 50.0% | |
| TTGCAGCATCCAGACCCTAT+TGG | - | chr7.3:11213559-11213578 | MS.gene22384:intron | 50.0% | |
| !!! | TTATTTTTGCCTGGCCCGGT+TGG | - | chr7.3:11215681-11215700 | MS.gene22384:intron | 50.0% |
| AGTGTCCGACACACGCTACA+CGG | + | chr7.3:11213847-11213866 | None:intergenic | 55.0% | |
| ATTGGGGGAATGTCTGGTGG+CGG | - | chr7.3:11214145-11214164 | MS.gene22384:intron | 55.0% | |
| CACATTGGGGGAATGTCTGG+TGG | - | chr7.3:11214142-11214161 | MS.gene22384:intron | 55.0% | |
| CATCCAGACCCTATTGGGGA+TGG | - | chr7.3:11213565-11213584 | MS.gene22384:intron | 55.0% | |
| GCAGCATCCAGACCCTATTG+GGG | - | chr7.3:11213561-11213580 | MS.gene22384:intron | 55.0% | |
| GCCGAGAACTCAAGCAGCTT+GGG | - | chr7.3:11214977-11214996 | MS.gene22384:intron | 55.0% | |
| GCAGGTCATGGATGACGCTG+TGG | - | chr7.3:11215833-11215852 | MS.gene22384:CDS | 60.0% | |
| GGCCGAGAACTCAAGCAGCT+TGG | - | chr7.3:11214976-11214995 | MS.gene22384:intron | 60.0% | |
| GGTGTCCGTGTAGCGTGTGT+CGG | - | chr7.3:11213839-11213858 | MS.gene22384:intron | 60.0% | |
| GTGTAGCGTGTGTCGGACAC+TGG | - | chr7.3:11213846-11213865 | MS.gene22384:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 11213340 | 11215887 | 11213340 | ID=MS.gene22384 |
| chr7.3 | mRNA | 11213340 | 11215887 | 11213340 | ID=MS.gene22384.t1;Parent=MS.gene22384 |
| chr7.3 | exon | 11215747 | 11215887 | 11215747 | ID=MS.gene22384.t1.exon1;Parent=MS.gene22384.t1 |
| chr7.3 | CDS | 11215747 | 11215887 | 11215747 | ID=cds.MS.gene22384.t1;Parent=MS.gene22384.t1 |
| chr7.3 | exon | 11215552 | 11215662 | 11215552 | ID=MS.gene22384.t1.exon2;Parent=MS.gene22384.t1 |
| chr7.3 | CDS | 11215552 | 11215662 | 11215552 | ID=cds.MS.gene22384.t1;Parent=MS.gene22384.t1 |
| chr7.3 | exon | 11214225 | 11214293 | 11214225 | ID=MS.gene22384.t1.exon3;Parent=MS.gene22384.t1 |
| chr7.3 | CDS | 11214225 | 11214293 | 11214225 | ID=cds.MS.gene22384.t1;Parent=MS.gene22384.t1 |
| chr7.3 | exon | 11213340 | 11213390 | 11213340 | ID=MS.gene22384.t1.exon4;Parent=MS.gene22384.t1 |
| chr7.3 | CDS | 11213340 | 11213390 | 11213340 | ID=cds.MS.gene22384.t1;Parent=MS.gene22384.t1 |
| Gene Sequence |
| Protein sequence |
