Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58374.t1 | XP_013464631.1 | 86.8 | 197 | 9 | 4 | 1 | 194 | 1 | 183 | 1.50E-76 | 295.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58374.t1 | A0A072VAN1 | 86.8 | 197 | 9 | 4 | 1 | 194 | 1 | 183 | 1.1e-76 | 295.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049171 | MS.gene58374 | 0.910823 | 1.22E-82 | -1.69E-46 |
MS.gene049173 | MS.gene58374 | 0.85631 | 3.51E-62 | -1.69E-46 |
MS.gene049217 | MS.gene58374 | 0.889881 | 1.63E-73 | -1.69E-46 |
MS.gene049222 | MS.gene58374 | 0.874799 | 5.09E-68 | -1.69E-46 |
MS.gene049232 | MS.gene58374 | 0.802173 | 6.36E-49 | -1.69E-46 |
MS.gene049281 | MS.gene58374 | -0.808741 | 2.67E-50 | -1.69E-46 |
MS.gene049285 | MS.gene58374 | 0.928516 | 2.58E-92 | -1.69E-46 |
MS.gene049320 | MS.gene58374 | 0.905082 | 6.25E-80 | -1.69E-46 |
MS.gene04939 | MS.gene58374 | 0.82879 | 7.39E-55 | -1.69E-46 |
MS.gene049609 | MS.gene58374 | 0.836205 | 1.07E-56 | -1.69E-46 |
MS.gene049627 | MS.gene58374 | 0.837317 | 5.58E-57 | -1.69E-46 |
MS.gene049633 | MS.gene58374 | 0.851959 | 6.32E-61 | -1.69E-46 |
MS.gene049805 | MS.gene58374 | 0.815594 | 8.54E-52 | -1.69E-46 |
MS.gene05010 | MS.gene58374 | 0.874403 | 6.94E-68 | -1.69E-46 |
MS.gene050163 | MS.gene58374 | 0.912789 | 1.30E-83 | -1.69E-46 |
MS.gene050165 | MS.gene58374 | 0.910058 | 2.86E-82 | -1.69E-46 |
MS.gene050170 | MS.gene58374 | 0.806073 | 9.82E-50 | -1.69E-46 |
MS.gene050323 | MS.gene58374 | 0.84003 | 1.11E-57 | -1.69E-46 |
MS.gene050333 | MS.gene58374 | 0.880883 | 3.80E-70 | -1.69E-46 |
MS.gene050444 | MS.gene58374 | 0.860124 | 2.57E-63 | -1.69E-46 |
MS.gene050475 | MS.gene58374 | -0.809226 | 2.10E-50 | -1.69E-46 |
MS.gene050496 | MS.gene58374 | 0.838277 | 3.16E-57 | -1.69E-46 |
MS.gene050504 | MS.gene58374 | 0.910682 | 1.43E-82 | -1.69E-46 |
MS.gene050518 | MS.gene58374 | 0.891864 | 2.69E-74 | -1.69E-46 |
MS.gene050538 | MS.gene58374 | 0.81844 | 1.96E-52 | -1.69E-46 |
MS.gene050541 | MS.gene58374 | -0.804017 | 2.64E-49 | -1.69E-46 |
MS.gene050577 | MS.gene58374 | 0.85664 | 2.81E-62 | -1.69E-46 |
MS.gene050612 | MS.gene58374 | 0.923103 | 4.13E-89 | -1.69E-46 |
MS.gene050675 | MS.gene58374 | 0.878735 | 2.21E-69 | -1.69E-46 |
MS.gene050699 | MS.gene58374 | 0.907031 | 7.86E-81 | -1.69E-46 |
MS.gene050747 | MS.gene58374 | 0.821235 | 4.50E-53 | -1.69E-46 |
MS.gene050772 | MS.gene58374 | 0.874858 | 4.86E-68 | -1.69E-46 |
MS.gene05079 | MS.gene58374 | -0.815359 | 9.63E-52 | -1.69E-46 |
MS.gene05080 | MS.gene58374 | 0.842768 | 2.11E-58 | -1.69E-46 |
MS.gene05081 | MS.gene58374 | 0.823549 | 1.31E-53 | -1.69E-46 |
MS.gene050868 | MS.gene58374 | 0.844182 | 8.86E-59 | -1.69E-46 |
MS.gene050871 | MS.gene58374 | 0.841497 | 4.59E-58 | -1.69E-46 |
MS.gene050876 | MS.gene58374 | 0.853905 | 1.75E-61 | -1.69E-46 |
MS.gene050904 | MS.gene58374 | 0.826606 | 2.47E-54 | -1.69E-46 |
MS.gene050950 | MS.gene58374 | 0.822309 | 2.54E-53 | -1.69E-46 |
MS.gene050986 | MS.gene58374 | 0.897883 | 9.13E-77 | -1.69E-46 |
MS.gene05100 | MS.gene58374 | 0.863321 | 2.71E-64 | -1.69E-46 |
MS.gene051138 | MS.gene58374 | -0.806112 | 9.64E-50 | -1.69E-46 |
MS.gene051228 | MS.gene58374 | 0.855038 | 8.25E-62 | -1.69E-46 |
MS.gene051268 | MS.gene58374 | 0.823265 | 1.52E-53 | -1.69E-46 |
MS.gene051317 | MS.gene58374 | 0.880282 | 6.24E-70 | -1.69E-46 |
MS.gene051366 | MS.gene58374 | -0.806235 | 9.08E-50 | -1.69E-46 |
MS.gene051434 | MS.gene58374 | 0.847315 | 1.25E-59 | -1.69E-46 |
MS.gene051551 | MS.gene58374 | 0.852893 | 3.42E-61 | -1.69E-46 |
MS.gene051617 | MS.gene58374 | 0.821584 | 3.74E-53 | -1.69E-46 |
MS.gene051666 | MS.gene58374 | 0.825607 | 4.27E-54 | -1.69E-46 |
MS.gene051694 | MS.gene58374 | 0.822041 | 2.93E-53 | -1.69E-46 |
MS.gene051810 | MS.gene58374 | 0.918703 | 1.12E-86 | -1.69E-46 |
MS.gene051838 | MS.gene58374 | 0.81386 | 2.07E-51 | -1.69E-46 |
MS.gene051858 | MS.gene58374 | 0.857797 | 1.28E-62 | -1.69E-46 |
MS.gene051949 | MS.gene58374 | 0.890009 | 1.45E-73 | -1.69E-46 |
MS.gene052129 | MS.gene58374 | -0.805977 | 1.03E-49 | -1.69E-46 |
MS.gene052164 | MS.gene58374 | 0.82793 | 1.19E-54 | -1.69E-46 |
MS.gene052271 | MS.gene58374 | 0.873142 | 1.85E-67 | -1.69E-46 |
MS.gene052379 | MS.gene58374 | 0.857649 | 1.41E-62 | -1.69E-46 |
MS.gene052482 | MS.gene58374 | 0.815542 | 8.77E-52 | -1.69E-46 |
MS.gene052484 | MS.gene58374 | 0.807674 | 4.50E-50 | -1.69E-46 |
MS.gene052486 | MS.gene58374 | 0.831646 | 1.48E-55 | -1.69E-46 |
MS.gene052503 | MS.gene58374 | 0.822681 | 2.08E-53 | -1.69E-46 |
MS.gene052506 | MS.gene58374 | 0.82179 | 3.35E-53 | -1.69E-46 |
MS.gene052615 | MS.gene58374 | 0.84816 | 7.31E-60 | -1.69E-46 |
MS.gene052822 | MS.gene58374 | 0.838743 | 2.40E-57 | -1.69E-46 |
MS.gene052823 | MS.gene58374 | 0.809897 | 1.51E-50 | -1.69E-46 |
MS.gene052825 | MS.gene58374 | 0.810572 | 1.08E-50 | -1.69E-46 |
MS.gene052870 | MS.gene58374 | 0.867594 | 1.22E-65 | -1.69E-46 |
MS.gene052872 | MS.gene58374 | 0.87873 | 2.22E-69 | -1.69E-46 |
MS.gene052916 | MS.gene58374 | 0.817281 | 3.58E-52 | -1.69E-46 |
MS.gene052966 | MS.gene58374 | 0.83489 | 2.31E-56 | -1.69E-46 |
MS.gene053009 | MS.gene58374 | 0.8234 | 1.41E-53 | -1.69E-46 |
MS.gene053104 | MS.gene58374 | 0.813677 | 2.27E-51 | -1.69E-46 |
MS.gene053203 | MS.gene58374 | 0.844199 | 8.77E-59 | -1.69E-46 |
MS.gene053207 | MS.gene58374 | 0.859049 | 5.41E-63 | -1.69E-46 |
MS.gene053213 | MS.gene58374 | 0.879973 | 8.04E-70 | -1.69E-46 |
MS.gene053284 | MS.gene58374 | 0.838168 | 3.38E-57 | -1.69E-46 |
MS.gene053285 | MS.gene58374 | 0.829466 | 5.07E-55 | -1.69E-46 |
MS.gene053286 | MS.gene58374 | 0.879257 | 1.44E-69 | -1.69E-46 |
MS.gene053322 | MS.gene58374 | 0.830213 | 3.33E-55 | -1.69E-46 |
MS.gene053420 | MS.gene58374 | -0.802104 | 6.57E-49 | -1.69E-46 |
MS.gene053479 | MS.gene58374 | 0.835863 | 1.31E-56 | -1.69E-46 |
MS.gene053480 | MS.gene58374 | 0.837525 | 4.94E-57 | -1.69E-46 |
MS.gene053561 | MS.gene58374 | -0.828959 | 6.72E-55 | -1.69E-46 |
MS.gene053574 | MS.gene58374 | 0.809664 | 1.69E-50 | -1.69E-46 |
MS.gene053632 | MS.gene58374 | 0.877754 | 4.87E-69 | -1.69E-46 |
MS.gene053824 | MS.gene58374 | 0.874145 | 8.49E-68 | -1.69E-46 |
MS.gene053915 | MS.gene58374 | 0.802357 | 5.83E-49 | -1.69E-46 |
MS.gene053916 | MS.gene58374 | 0.852123 | 5.68E-61 | -1.69E-46 |
MS.gene054374 | MS.gene58374 | 0.805892 | 1.07E-49 | -1.69E-46 |
MS.gene054408 | MS.gene58374 | 0.807957 | 3.92E-50 | -1.69E-46 |
MS.gene054595 | MS.gene58374 | 0.826377 | 2.80E-54 | -1.69E-46 |
MS.gene054600 | MS.gene58374 | 0.891087 | 5.47E-74 | -1.69E-46 |
MS.gene054642 | MS.gene58374 | 0.910302 | 2.18E-82 | -1.69E-46 |
MS.gene05470 | MS.gene58374 | 0.850353 | 1.79E-60 | -1.69E-46 |
MS.gene054954 | MS.gene58374 | 0.91277 | 1.33E-83 | -1.69E-46 |
MS.gene054959 | MS.gene58374 | -0.836477 | 9.15E-57 | -1.69E-46 |
MS.gene055154 | MS.gene58374 | -0.806289 | 8.84E-50 | -1.69E-46 |
MS.gene055206 | MS.gene58374 | 0.875704 | 2.50E-68 | -1.69E-46 |
MS.gene055212 | MS.gene58374 | 0.80825 | 3.40E-50 | -1.69E-46 |
MS.gene055224 | MS.gene58374 | 0.814352 | 1.61E-51 | -1.69E-46 |
MS.gene055289 | MS.gene58374 | 0.802718 | 4.91E-49 | -1.69E-46 |
MS.gene055362 | MS.gene58374 | 0.911187 | 8.08E-83 | -1.69E-46 |
MS.gene055397 | MS.gene58374 | 0.814757 | 1.31E-51 | -1.69E-46 |
MS.gene055499 | MS.gene58374 | 0.822503 | 2.29E-53 | -1.69E-46 |
MS.gene055502 | MS.gene58374 | 0.896334 | 4.08E-76 | -1.69E-46 |
MS.gene055577 | MS.gene58374 | 0.899158 | 2.61E-77 | -1.69E-46 |
MS.gene055634 | MS.gene58374 | 0.807509 | 4.88E-50 | -1.69E-46 |
MS.gene055636 | MS.gene58374 | 0.834461 | 2.96E-56 | -1.69E-46 |
MS.gene055638 | MS.gene58374 | 0.846445 | 2.16E-59 | -1.69E-46 |
MS.gene055647 | MS.gene58374 | 0.819009 | 1.45E-52 | -1.69E-46 |
MS.gene055722 | MS.gene58374 | 0.840409 | 8.85E-58 | -1.69E-46 |
MS.gene055748 | MS.gene58374 | 0.881779 | 1.81E-70 | -1.69E-46 |
MS.gene055750 | MS.gene58374 | 0.85012 | 2.09E-60 | -1.69E-46 |
MS.gene055751 | MS.gene58374 | 0.883688 | 3.63E-71 | -1.69E-46 |
MS.gene055776 | MS.gene58374 | 0.855052 | 8.17E-62 | -1.69E-46 |
MS.gene05589 | MS.gene58374 | 0.842918 | 1.93E-58 | -1.69E-46 |
MS.gene05592 | MS.gene58374 | 0.834837 | 2.38E-56 | -1.69E-46 |
MS.gene055941 | MS.gene58374 | 0.856027 | 4.25E-62 | -1.69E-46 |
MS.gene055956 | MS.gene58374 | -0.852008 | 6.12E-61 | -1.69E-46 |
MS.gene056083 | MS.gene58374 | 0.832348 | 9.95E-56 | -1.69E-46 |
MS.gene056374 | MS.gene58374 | 0.871427 | 6.89E-67 | -1.69E-46 |
MS.gene056409 | MS.gene58374 | 0.846681 | 1.86E-59 | -1.69E-46 |
MS.gene056449 | MS.gene58374 | 0.843945 | 1.03E-58 | -1.69E-46 |
MS.gene056504 | MS.gene58374 | 0.87098 | 9.68E-67 | -1.69E-46 |
MS.gene056510 | MS.gene58374 | 0.878147 | 3.55E-69 | -1.69E-46 |
MS.gene056550 | MS.gene58374 | -0.825205 | 5.32E-54 | -1.69E-46 |
MS.gene056610 | MS.gene58374 | 0.845349 | 4.29E-59 | -1.69E-46 |
MS.gene056657 | MS.gene58374 | 0.906804 | 1.00E-80 | -1.69E-46 |
MS.gene056692 | MS.gene58374 | 0.871101 | 8.83E-67 | -1.69E-46 |
MS.gene056897 | MS.gene58374 | 0.808534 | 2.95E-50 | -1.69E-46 |
MS.gene056898 | MS.gene58374 | 0.852515 | 4.39E-61 | -1.69E-46 |
MS.gene056903 | MS.gene58374 | 0.815001 | 1.16E-51 | -1.69E-46 |
MS.gene056946 | MS.gene58374 | 0.808826 | 2.56E-50 | -1.69E-46 |
MS.gene057076 | MS.gene58374 | 0.805724 | 1.16E-49 | -1.69E-46 |
MS.gene057129 | MS.gene58374 | 0.861703 | 8.52E-64 | -1.69E-46 |
MS.gene057196 | MS.gene58374 | 0.835477 | 1.64E-56 | -1.69E-46 |
MS.gene057246 | MS.gene58374 | 0.813796 | 2.14E-51 | -1.69E-46 |
MS.gene057331 | MS.gene58374 | 0.836808 | 7.53E-57 | -1.69E-46 |
MS.gene057332 | MS.gene58374 | 0.82799 | 1.15E-54 | -1.69E-46 |
MS.gene057416 | MS.gene58374 | 0.851468 | 8.70E-61 | -1.69E-46 |
MS.gene057658 | MS.gene58374 | 0.865457 | 5.82E-65 | -1.69E-46 |
MS.gene057831 | MS.gene58374 | 0.860191 | 2.45E-63 | -1.69E-46 |
MS.gene057926 | MS.gene58374 | 0.813917 | 2.01E-51 | -1.69E-46 |
MS.gene057986 | MS.gene58374 | 0.836816 | 7.50E-57 | -1.69E-46 |
MS.gene058019 | MS.gene58374 | 0.803471 | 3.43E-49 | -1.69E-46 |
MS.gene058323 | MS.gene58374 | 0.826252 | 3.00E-54 | -1.69E-46 |
MS.gene058334 | MS.gene58374 | -0.801354 | 9.37E-49 | -1.69E-46 |
MS.gene058335 | MS.gene58374 | 0.811052 | 8.49E-51 | -1.69E-46 |
MS.gene058338 | MS.gene58374 | 0.841736 | 3.97E-58 | -1.69E-46 |
MS.gene05837 | MS.gene58374 | 0.842129 | 3.12E-58 | -1.69E-46 |
MS.gene058419 | MS.gene58374 | 0.916523 | 1.61E-85 | -1.69E-46 |
MS.gene058544 | MS.gene58374 | 0.867845 | 1.01E-65 | -1.69E-46 |
MS.gene058719 | MS.gene58374 | 0.80146 | 8.91E-49 | -1.69E-46 |
MS.gene058723 | MS.gene58374 | 0.888283 | 6.77E-73 | -1.69E-46 |
MS.gene058773 | MS.gene58374 | 0.901478 | 2.57E-78 | -1.69E-46 |
MS.gene058838 | MS.gene58374 | 0.861967 | 7.07E-64 | -1.69E-46 |
MS.gene059022 | MS.gene58374 | 0.918414 | 1.60E-86 | -1.69E-46 |
MS.gene059023 | MS.gene58374 | 0.904718 | 9.15E-80 | -1.69E-46 |
MS.gene059029 | MS.gene58374 | 0.884988 | 1.20E-71 | -1.69E-46 |
MS.gene059079 | MS.gene58374 | 0.816372 | 5.72E-52 | -1.69E-46 |
MS.gene059102 | MS.gene58374 | -0.807681 | 4.49E-50 | -1.69E-46 |
MS.gene05912 | MS.gene58374 | 0.816694 | 4.85E-52 | -1.69E-46 |
MS.gene05913 | MS.gene58374 | 0.824708 | 6.97E-54 | -1.69E-46 |
MS.gene05914 | MS.gene58374 | 0.845578 | 3.72E-59 | -1.69E-46 |
MS.gene05934 | MS.gene58374 | 0.8352 | 1.93E-56 | -1.69E-46 |
MS.gene059677 | MS.gene58374 | 0.936786 | 9.94E-98 | -1.69E-46 |
MS.gene059718 | MS.gene58374 | 0.890549 | 8.91E-74 | -1.69E-46 |
MS.gene059756 | MS.gene58374 | 0.887228 | 1.72E-72 | -1.69E-46 |
MS.gene059801 | MS.gene58374 | 0.821567 | 3.77E-53 | -1.69E-46 |
MS.gene059858 | MS.gene58374 | 0.820442 | 6.84E-53 | -1.69E-46 |
MS.gene059865 | MS.gene58374 | 0.859266 | 4.66E-63 | -1.69E-46 |
MS.gene059902 | MS.gene58374 | 0.855572 | 5.77E-62 | -1.69E-46 |
MS.gene059960 | MS.gene58374 | 0.831713 | 1.43E-55 | -1.69E-46 |
MS.gene06000 | MS.gene58374 | 0.800364 | 1.49E-48 | -1.69E-46 |
MS.gene060193 | MS.gene58374 | 0.812256 | 4.64E-51 | -1.69E-46 |
MS.gene060336 | MS.gene58374 | -0.805921 | 1.06E-49 | -1.69E-46 |
MS.gene060337 | MS.gene58374 | -0.838843 | 2.26E-57 | -1.69E-46 |
MS.gene060341 | MS.gene58374 | 0.819065 | 1.41E-52 | -1.69E-46 |
MS.gene060703 | MS.gene58374 | 0.884677 | 1.56E-71 | -1.69E-46 |
MS.gene060728 | MS.gene58374 | 0.828874 | 7.05E-55 | -1.69E-46 |
MS.gene060762 | MS.gene58374 | 0.883602 | 3.91E-71 | -1.69E-46 |
MS.gene06077 | MS.gene58374 | 0.881436 | 2.40E-70 | -1.69E-46 |
MS.gene060835 | MS.gene58374 | 0.802386 | 5.75E-49 | -1.69E-46 |
MS.gene06092 | MS.gene58374 | 0.865991 | 3.95E-65 | -1.69E-46 |
MS.gene060982 | MS.gene58374 | 0.858183 | 9.81E-63 | -1.69E-46 |
MS.gene061150 | MS.gene58374 | 0.913817 | 3.96E-84 | -1.69E-46 |
MS.gene061200 | MS.gene58374 | 0.832875 | 7.36E-56 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58374.t1 | MTR_2g078540 | 85.052 | 194 | 18 | 2 | 1 | 194 | 1 | 183 | 3.56e-111 | 319 |
MS.gene58374.t1 | MTR_6g042030 | 37.824 | 193 | 95 | 5 | 13 | 194 | 1 | 179 | 4.39e-29 | 109 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58374.t1 | AT3G15110 | 58.209 | 134 | 49 | 2 | 68 | 194 | 57 | 190 | 4.87e-42 | 143 |
Find 68 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGGTTAGTAAGAGTGGTAT+TGG | 0.334857 | 2.3:-19260856 | None:intergenic |
CACCTGTTCAAGCATTTCTC+GGG | 0.359534 | 2.3:+19262215 | MS.gene58374:CDS |
GGTTTAGTTGTGTGGAGAAA+AGG | 0.365612 | 2.3:-19260916 | None:intergenic |
TCACCTGTTCAAGCATTTCT+CGG | 0.367357 | 2.3:+19262214 | MS.gene58374:CDS |
AGAGAAGGAGTAGAATCATA+TGG | 0.370898 | 2.3:-19261048 | None:intergenic |
TCTTCCGCTCCTTCCGCCGC+AGG | 0.403419 | 2.3:+19261148 | MS.gene58374:CDS |
GGAGAACACTAGCAGCGATT+TGG | 0.415238 | 2.3:-19261101 | None:intergenic |
TATTGGAAGGTGGTGGCACT+TGG | 0.415706 | 2.3:-19260839 | None:intergenic |
GTCAGTAAAGGAAGAAGCAT+TGG | 0.416654 | 2.3:+19262138 | MS.gene58374:CDS |
AATCATCTGAAATTGTTTGC+CGG | 0.417137 | 2.3:-19262306 | None:intergenic |
AGGGTTTATAGTGATGGTTA+TGG | 0.420693 | 2.3:-19260885 | None:intergenic |
GAAGAGAGGGTTTATAGTGA+TGG | 0.429056 | 2.3:-19260891 | None:intergenic |
TGCGGCGGAAGGAGCGGAAG+AGG | 0.447068 | 2.3:-19261146 | None:intergenic |
GCCCCGAGAAATGCTTGAAC+AGG | 0.450986 | 2.3:-19262217 | None:intergenic |
ATTGGAGACTTTGAAAGCTA+TGG | 0.451641 | 2.3:+19262156 | MS.gene58374:CDS |
GCTCAGACCCGCCTCGATGA+TGG | 0.451902 | 2.3:-19262284 | None:intergenic |
TTGGAGACTTTGAAAGCTAT+GGG | 0.454281 | 2.3:+19262157 | MS.gene58374:CDS |
TGAAATTGAGTAAGAAGAAG+TGG | 0.464249 | 2.3:-19260938 | None:intergenic |
AGTGATGGTTATGGTTGTTG+TGG | 0.465057 | 2.3:-19260876 | None:intergenic |
GTTTAGTTGTGTGGAGAAAA+GGG | 0.468824 | 2.3:-19260915 | None:intergenic |
GTGATGGTTATGGTTGTTGT+GGG | 0.468971 | 2.3:-19260875 | None:intergenic |
AAGAAGTGGGTTTAGTTGTG+TGG | 0.484357 | 2.3:-19260924 | None:intergenic |
TCATCGAGGCGGGTCTGAGC+CGG | 0.484689 | 2.3:+19262287 | MS.gene58374:CDS |
TGGAGAAAAGGGAGAAGAGA+GGG | 0.491803 | 2.3:-19260904 | None:intergenic |
GAGAAGGAGTAGAATCATAT+GGG | 0.494622 | 2.3:-19261047 | None:intergenic |
GAAGGAGCGGAAGAGGAGGA+CGG | 0.500736 | 2.3:-19261139 | None:intergenic |
GAATCATATGGGATTTCAAT+GGG | 0.507790 | 2.3:-19261036 | None:intergenic |
GCAGCGATTTGGATGAAAGA+AGG | 0.516847 | 2.3:-19261090 | None:intergenic |
AGAATCATATGGGATTTCAA+TGG | 0.519315 | 2.3:-19261037 | None:intergenic |
GGCTAAACGTCTCAAACAAA+CGG | 0.521583 | 2.3:+19261170 | MS.gene58374:CDS |
TGTTAAGTTTGAATCAGATA+AGG | 0.522769 | 2.3:+19262391 | MS.gene58374:CDS |
GTGGAGAAAAGGGAGAAGAG+AGG | 0.523834 | 2.3:-19260905 | None:intergenic |
CTTCCGCTCCTTCCGCCGCA+GGG | 0.525679 | 2.3:+19261149 | MS.gene58374:CDS |
TCCATCTGTTGTGATTGTTG+TGG | 0.537652 | 2.3:-19261004 | None:intergenic |
TTCGCCACCATCATCGAGGC+GGG | 0.539823 | 2.3:+19262277 | MS.gene58374:CDS |
GGCGGAAGGAGCGGAAGAGG+AGG | 0.540765 | 2.3:-19261143 | None:intergenic |
TTGTTGTGGGTTAGTAAGAG+TGG | 0.550988 | 2.3:-19260862 | None:intergenic |
TTCAGGAGAGAAGTCAGTAA+AGG | 0.553365 | 2.3:+19262126 | MS.gene58374:CDS |
ACGTTTAGCCCTGCGGCGGA+AGG | 0.554548 | 2.3:-19261157 | None:intergenic |
GAAATTGAGTAAGAAGAAGT+GGG | 0.555857 | 2.3:-19260937 | None:intergenic |
ACCACAACAATCACAACAGA+TGG | 0.556667 | 2.3:+19261003 | MS.gene58374:CDS |
TAGCCCTGCGGCGGAAGGAG+CGG | 0.556744 | 2.3:-19261152 | None:intergenic |
ATCACAACAGATGGAGGAGA+TGG | 0.559223 | 2.3:+19261012 | MS.gene58374:CDS |
TTTCTCGGGGCAATATCAGC+TGG | 0.567839 | 2.3:+19262229 | MS.gene58374:CDS |
TCAGTGGAGGAGAGAAGAGA+AGG | 0.568555 | 2.3:-19261063 | None:intergenic |
GCTGCTAGTGTTCTCCTCAC+CGG | 0.569698 | 2.3:+19261108 | MS.gene58374:CDS |
GAATGATGATGATGTTGAAA+GGG | 0.570859 | 2.3:-19260962 | None:intergenic |
GTAAGAGTGGTATTGGAAGG+TGG | 0.574470 | 2.3:-19260849 | None:intergenic |
CAGCGATTTGGATGAAAGAA+GGG | 0.577029 | 2.3:-19261089 | None:intergenic |
AGAAATGCTTGAACAGGTGA+AGG | 0.583226 | 2.3:-19262211 | None:intergenic |
CAACATCATCATCATTCACA+TGG | 0.596812 | 2.3:+19260968 | MS.gene58374:CDS |
GCTTCAATAGAGACTACTAA+AGG | 0.596943 | 2.3:+19262184 | MS.gene58374:CDS |
AATGCTTGAACAGGTGAAGG+TGG | 0.599999 | 2.3:-19262208 | None:intergenic |
TGAATGATGATGATGTTGAA+AGG | 0.601799 | 2.3:-19260963 | None:intergenic |
TTAGTAAGAGTGGTATTGGA+AGG | 0.617980 | 2.3:-19260852 | None:intergenic |
CAGACCCGCCTCGATGATGG+TGG | 0.620049 | 2.3:-19262281 | None:intergenic |
GAGGAGGACGGAAATAGCAC+CGG | 0.620911 | 2.3:-19261127 | None:intergenic |
ACCTGTTCAAGCATTTCTCG+GGG | 0.627536 | 2.3:+19262216 | MS.gene58374:CDS |
GAAAGAAGGGTCATCAGTGG+AGG | 0.631336 | 2.3:-19261076 | None:intergenic |
ACAACAATCACAACAGATGG+AGG | 0.634223 | 2.3:+19261006 | MS.gene58374:CDS |
GATGAAAGAAGGGTCATCAG+TGG | 0.636441 | 2.3:-19261079 | None:intergenic |
GTTTGAGACGTTTAGCCCTG+CGG | 0.638809 | 2.3:-19261164 | None:intergenic |
AGAGTGGTATTGGAAGGTGG+TGG | 0.666864 | 2.3:-19260846 | None:intergenic |
TGAGACGTTTAGCCCTGCGG+CGG | 0.674454 | 2.3:-19261161 | None:intergenic |
GTTCGCCACCATCATCGAGG+CGG | 0.686352 | 2.3:+19262276 | MS.gene58374:CDS |
GGACGGAAATAGCACCGGTG+AGG | 0.690490 | 2.3:-19261122 | None:intergenic |
TAAGTTCGCCACCATCATCG+AGG | 0.692160 | 2.3:+19262273 | MS.gene58374:CDS |
TGGAGACTTTGAAAGCTATG+GGG | 0.694173 | 2.3:+19262158 | MS.gene58374:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAGAGAGAATTAAAATTT+AGG | - | chr2.3:19261501-19261520 | None:intergenic | 15.0% |
!! | CTTCAATAATTACATATTAA+TGG | - | chr2.3:19261537-19261556 | None:intergenic | 15.0% |
!!! | ATGATCACTCTTTTTAATAT+AGG | + | chr2.3:19261756-19261775 | MS.gene58374:intron | 20.0% |
!!! | TGATCACTCTTTTTAATATA+GGG | + | chr2.3:19261757-19261776 | MS.gene58374:intron | 20.0% |
! | CTATAGTTCAAAGACAAAAT+AGG | + | chr2.3:19261702-19261721 | MS.gene58374:intron | 25.0% |
! | GATAATCTCATTCTCAATTA+AGG | + | chr2.3:19261279-19261298 | MS.gene58374:intron | 25.0% |
! | TGCAAACAAAAAAACAGATA+CGG | - | chr2.3:19262366-19262385 | None:intergenic | 25.0% |
! | TGTTAAGTTTGAATCAGATA+AGG | + | chr2.3:19262391-19262410 | MS.gene58374:CDS | 25.0% |
! | TTATACTACATCATACAACT+CGG | - | chr2.3:19261590-19261609 | None:intergenic | 25.0% |
!! | TTGTTTGTGTTGAAGTTTTA+GGG | + | chr2.3:19262025-19262044 | MS.gene58374:intron | 25.0% |
!! | TTTGTTTGTGTTGAAGTTTT+AGG | + | chr2.3:19262024-19262043 | MS.gene58374:intron | 25.0% |
!!! | AAATGTGTAAAGCTTTGTTT+TGG | + | chr2.3:19261474-19261493 | MS.gene58374:intron | 25.0% |
!!! | CATTGAAATGAGTTTTTTTG+TGG | + | chr2.3:19262086-19262105 | MS.gene58374:intron | 25.0% |
AAAAAACAGATACGGCTAAA+AGG | - | chr2.3:19262358-19262377 | None:intergenic | 30.0% | |
AAAAGAGTGATCATTCGATT+TGG | - | chr2.3:19261750-19261769 | None:intergenic | 30.0% | |
AAGAATATGAGTTCAATTCC+TGG | + | chr2.3:19261402-19261421 | MS.gene58374:intron | 30.0% | |
ACAATTCTTGACCAAAGAAA+TGG | + | chr2.3:19261430-19261449 | MS.gene58374:intron | 30.0% | |
AGAATATGAGTTCAATTCCT+GGG | + | chr2.3:19261403-19261422 | MS.gene58374:intron | 30.0% | |
AGAATCATATGGGATTTCAA+TGG | - | chr2.3:19261040-19261059 | None:intergenic | 30.0% | |
GAAATTGAGTAAGAAGAAGT+GGG | - | chr2.3:19260940-19260959 | None:intergenic | 30.0% | |
GAATCATATGGGATTTCAAT+GGG | - | chr2.3:19261039-19261058 | None:intergenic | 30.0% | |
TATACTACATCATACAACTC+GGG | - | chr2.3:19261589-19261608 | None:intergenic | 30.0% | |
TCAGCTAGTTCAAAAAATGA+GGG | - | chr2.3:19261626-19261645 | None:intergenic | 30.0% | |
TCCTCATCATAAGAAATGTA+AGG | + | chr2.3:19261943-19261962 | MS.gene58374:intron | 30.0% | |
TGAAATTGAGTAAGAAGAAG+TGG | - | chr2.3:19260941-19260960 | None:intergenic | 30.0% | |
TTGTGATCCTTGATATATCA+AGG | - | chr2.3:19261862-19261881 | None:intergenic | 30.0% | |
TTGTTAACCTTCCATTTCTT+TGG | - | chr2.3:19261444-19261463 | None:intergenic | 30.0% | |
! | AATCATCTGAAATTGTTTGC+CGG | - | chr2.3:19262309-19262328 | None:intergenic | 30.0% |
! | GAATGATGATGATGTTGAAA+GGG | - | chr2.3:19260965-19260984 | None:intergenic | 30.0% |
! | TGAATGATGATGATGTTGAA+AGG | - | chr2.3:19260966-19260985 | None:intergenic | 30.0% |
! | TTTTAATATAGGGCTGCATA+AGG | + | chr2.3:19261767-19261786 | MS.gene58374:intron | 30.0% |
!!! | TCATTTTTTGAACTAGCTGA+GGG | + | chr2.3:19261626-19261645 | MS.gene58374:intron | 30.0% |
!!! | TTTTGTGGTTTTAGCAATTC+AGG | + | chr2.3:19262101-19262120 | MS.gene58374:intron | 30.0% |
AACTAGAGAAGTTCATCCTA+AGG | - | chr2.3:19261922-19261941 | None:intergenic | 35.0% | |
AGAGAAGGAGTAGAATCATA+TGG | - | chr2.3:19261051-19261070 | None:intergenic | 35.0% | |
AGGGTTTATAGTGATGGTTA+TGG | - | chr2.3:19260888-19260907 | None:intergenic | 35.0% | |
AGTCATTTGATAGAGCTCAT+TGG | - | chr2.3:19261372-19261391 | None:intergenic | 35.0% | |
CAACATCATCATCATTCACA+TGG | + | chr2.3:19260968-19260987 | MS.gene58374:CDS | 35.0% | |
CTCAGCTAGTTCAAAAAATG+AGG | - | chr2.3:19261627-19261646 | None:intergenic | 35.0% | |
CTCATTGGTGTAACATAACA+TGG | - | chr2.3:19261357-19261376 | None:intergenic | 35.0% | |
CTTGGATTTCAATTTGCCTT+AGG | + | chr2.3:19261903-19261922 | MS.gene58374:intron | 35.0% | |
GAGAAGGAGTAGAATCATAT+GGG | - | chr2.3:19261050-19261069 | None:intergenic | 35.0% | |
GATGCAATGAAAACAGTTTG+AGG | + | chr2.3:19261657-19261676 | MS.gene58374:intron | 35.0% | |
GCAGTTTCCTTGATATATCA+AGG | + | chr2.3:19261852-19261871 | MS.gene58374:intron | 35.0% | |
GCCTTACATTTCTTATGATG+AGG | - | chr2.3:19261947-19261966 | None:intergenic | 35.0% | |
GCTTCAATAGAGACTACTAA+AGG | + | chr2.3:19262184-19262203 | MS.gene58374:CDS | 35.0% | |
GTTTAGTTGTGTGGAGAAAA+GGG | - | chr2.3:19260918-19260937 | None:intergenic | 35.0% | |
TTCATGCTGTTCACATACTA+GGG | + | chr2.3:19261253-19261272 | MS.gene58374:intron | 35.0% | |
TTCTTGACCAAAGAAATGGA+AGG | + | chr2.3:19261434-19261453 | MS.gene58374:intron | 35.0% | |
TTGGTGTAACATAACATGGA+TGG | - | chr2.3:19261353-19261372 | None:intergenic | 35.0% | |
TTTCATGCTGTTCACATACT+AGG | + | chr2.3:19261252-19261271 | MS.gene58374:intron | 35.0% | |
! | ATTGGAGACTTTGAAAGCTA+TGG | + | chr2.3:19262156-19262175 | MS.gene58374:CDS | 35.0% |
! | TTAGTAAGAGTGGTATTGGA+AGG | - | chr2.3:19260855-19260874 | None:intergenic | 35.0% |
! | TTGGAGACTTTGAAAGCTAT+GGG | + | chr2.3:19262157-19262176 | MS.gene58374:CDS | 35.0% |
! | TTTTAGCAATTCAGGTCTTC+AGG | + | chr2.3:19262109-19262128 | MS.gene58374:intron | 35.0% |
!!! | CTCATTTTTTGAACTAGCTG+AGG | + | chr2.3:19261625-19261644 | MS.gene58374:intron | 35.0% |
AAAACGTTGCTGCTACATCT+TGG | + | chr2.3:19261885-19261904 | MS.gene58374:intron | 40.0% | |
ACAACAATCACAACAGATGG+AGG | + | chr2.3:19261006-19261025 | MS.gene58374:CDS | 40.0% | |
ACCACAACAATCACAACAGA+TGG | + | chr2.3:19261003-19261022 | MS.gene58374:CDS | 40.0% | |
AGAAATGCTTGAACAGGTGA+AGG | - | chr2.3:19262214-19262233 | None:intergenic | 40.0% | |
AGTGATGGTTATGGTTGTTG+TGG | - | chr2.3:19260879-19260898 | None:intergenic | 40.0% | |
ATATGAGTTCAATTCCTGGG+TGG | + | chr2.3:19261406-19261425 | MS.gene58374:intron | 40.0% | |
CAGTCTAATACTGCTGATGT+GGG | - | chr2.3:19261833-19261852 | None:intergenic | 40.0% | |
GAAGAGAGGGTTTATAGTGA+TGG | - | chr2.3:19260894-19260913 | None:intergenic | 40.0% | |
GCTAGTTCAAAAAATGAGGG+TGG | - | chr2.3:19261623-19261642 | None:intergenic | 40.0% | |
GGAGAGTGAATTGTAGCTTA+AGG | + | chr2.3:19261723-19261742 | MS.gene58374:intron | 40.0% | |
GGCTAAACGTCTCAAACAAA+CGG | + | chr2.3:19261170-19261189 | MS.gene58374:CDS | 40.0% | |
GGTTTAGTTGTGTGGAGAAA+AGG | - | chr2.3:19260919-19260938 | None:intergenic | 40.0% | |
GTGATGGTTATGGTTGTTGT+GGG | - | chr2.3:19260878-19260897 | None:intergenic | 40.0% | |
TCACCTGTTCAAGCATTTCT+CGG | + | chr2.3:19262214-19262233 | MS.gene58374:CDS | 40.0% | |
TCCATCTGTTGTGATTGTTG+TGG | - | chr2.3:19261007-19261026 | None:intergenic | 40.0% | |
TTCAGGAGAGAAGTCAGTAA+AGG | + | chr2.3:19262126-19262145 | MS.gene58374:CDS | 40.0% | |
! | AAGAAGTGGGTTTAGTTGTG+TGG | - | chr2.3:19260927-19260946 | None:intergenic | 40.0% |
! | CAGCGATTTGGATGAAAGAA+GGG | - | chr2.3:19261092-19261111 | None:intergenic | 40.0% |
! | GTCAGTAAAGGAAGAAGCAT+TGG | + | chr2.3:19262138-19262157 | MS.gene58374:CDS | 40.0% |
! | TGGAGACTTTGAAAGCTATG+GGG | + | chr2.3:19262158-19262177 | MS.gene58374:CDS | 40.0% |
!! | TGGGTTAGTAAGAGTGGTAT+TGG | - | chr2.3:19260859-19260878 | None:intergenic | 40.0% |
!! | TTGTTGTGGGTTAGTAAGAG+TGG | - | chr2.3:19260865-19260884 | None:intergenic | 40.0% |
AATGCTTGAACAGGTGAAGG+TGG | - | chr2.3:19262211-19262230 | None:intergenic | 45.0% | |
ACCTGTTCAAGCATTTCTCG+GGG | + | chr2.3:19262216-19262235 | MS.gene58374:CDS | 45.0% | |
ATCACAACAGATGGAGGAGA+TGG | + | chr2.3:19261012-19261031 | MS.gene58374:CDS | 45.0% | |
ATGCTGTTCACATACTAGGG+AGG | + | chr2.3:19261256-19261275 | MS.gene58374:intron | 45.0% | |
CACCTGTTCAAGCATTTCTC+GGG | + | chr2.3:19262215-19262234 | MS.gene58374:CDS | 45.0% | |
GATGAAAGAAGGGTCATCAG+TGG | - | chr2.3:19261082-19261101 | None:intergenic | 45.0% | |
GCAGTCTAATACTGCTGATG+TGG | - | chr2.3:19261834-19261853 | None:intergenic | 45.0% | |
TACGGCTAAAAGGACATGAG+AGG | - | chr2.3:19262348-19262367 | None:intergenic | 45.0% | |
TGCTGTTCACATACTAGGGA+GGG | + | chr2.3:19261257-19261276 | MS.gene58374:intron | 45.0% | |
TGGAGAAAAGGGAGAAGAGA+GGG | - | chr2.3:19260907-19260926 | None:intergenic | 45.0% | |
! | GCAGCGATTTGGATGAAAGA+AGG | - | chr2.3:19261093-19261112 | None:intergenic | 45.0% |
! | GTAAGAGTGGTATTGGAAGG+TGG | - | chr2.3:19260852-19260871 | None:intergenic | 45.0% |
!! | CATGGATGGATTGTGACACT+TGG | - | chr2.3:19261339-19261358 | None:intergenic | 45.0% |
GAAAGAAGGGTCATCAGTGG+AGG | - | chr2.3:19261079-19261098 | None:intergenic | 50.0% | |
GGAGAACACTAGCAGCGATT+TGG | - | chr2.3:19261104-19261123 | None:intergenic | 50.0% | |
GGTCAAGAATTGTTCCACCC+AGG | - | chr2.3:19261423-19261442 | None:intergenic | 50.0% | |
GTGGAGAAAAGGGAGAAGAG+AGG | - | chr2.3:19260908-19260927 | None:intergenic | 50.0% | |
TAAGTTCGCCACCATCATCG+AGG | + | chr2.3:19262273-19262292 | MS.gene58374:CDS | 50.0% | |
TCAGTGGAGGAGAGAAGAGA+AGG | - | chr2.3:19261066-19261085 | None:intergenic | 50.0% | |
TTTCTCGGGGCAATATCAGC+TGG | + | chr2.3:19262229-19262248 | MS.gene58374:CDS | 50.0% | |
! | AGAGTGGTATTGGAAGGTGG+TGG | - | chr2.3:19260849-19260868 | None:intergenic | 50.0% |
! | GTTTGAGACGTTTAGCCCTG+CGG | - | chr2.3:19261167-19261186 | None:intergenic | 50.0% |
! | TATTGGAAGGTGGTGGCACT+TGG | - | chr2.3:19260842-19260861 | None:intergenic | 50.0% |
GAGGAGGACGGAAATAGCAC+CGG | - | chr2.3:19261130-19261149 | None:intergenic | 55.0% | |
GCCCCGAGAAATGCTTGAAC+AGG | - | chr2.3:19262220-19262239 | None:intergenic | 55.0% | |
GCTGCTAGTGTTCTCCTCAC+CGG | + | chr2.3:19261108-19261127 | MS.gene58374:CDS | 55.0% | |
GAAGGAGCGGAAGAGGAGGA+CGG | - | chr2.3:19261142-19261161 | None:intergenic | 60.0% | |
GTTCGCCACCATCATCGAGG+CGG | + | chr2.3:19262276-19262295 | MS.gene58374:CDS | 60.0% | |
TGAGACGTTTAGCCCTGCGG+CGG | - | chr2.3:19261164-19261183 | None:intergenic | 60.0% | |
TTCGCCACCATCATCGAGGC+GGG | + | chr2.3:19262277-19262296 | MS.gene58374:CDS | 60.0% | |
!! | GGACGGAAATAGCACCGGTG+AGG | - | chr2.3:19261125-19261144 | None:intergenic | 60.0% |
ACGTTTAGCCCTGCGGCGGA+AGG | - | chr2.3:19261160-19261179 | None:intergenic | 65.0% | |
GCTCAGACCCGCCTCGATGA+TGG | - | chr2.3:19262287-19262306 | None:intergenic | 65.0% | |
TCATCGAGGCGGGTCTGAGC+CGG | + | chr2.3:19262287-19262306 | MS.gene58374:CDS | 65.0% | |
! | CAGACCCGCCTCGATGATGG+TGG | - | chr2.3:19262284-19262303 | None:intergenic | 65.0% |
CTTCCGCTCCTTCCGCCGCA+GGG | + | chr2.3:19261149-19261168 | MS.gene58374:CDS | 70.0% | |
GGCGGAAGGAGCGGAAGAGG+AGG | - | chr2.3:19261146-19261165 | None:intergenic | 70.0% | |
TAGCCCTGCGGCGGAAGGAG+CGG | - | chr2.3:19261155-19261174 | None:intergenic | 70.0% | |
TCTTCCGCTCCTTCCGCCGC+AGG | + | chr2.3:19261148-19261167 | MS.gene58374:CDS | 70.0% | |
TGCGGCGGAAGGAGCGGAAG+AGG | - | chr2.3:19261149-19261168 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 19260829 | 19262430 | 19260829 | ID=MS.gene58374 |
chr2.3 | mRNA | 19260829 | 19262430 | 19260829 | ID=MS.gene58374.t1;Parent=MS.gene58374 |
chr2.3 | exon | 19260829 | 19261191 | 19260829 | ID=MS.gene58374.t1.exon1;Parent=MS.gene58374.t1 |
chr2.3 | CDS | 19260829 | 19261191 | 19260829 | ID=cds.MS.gene58374.t1;Parent=MS.gene58374.t1 |
chr2.3 | exon | 19262115 | 19262333 | 19262115 | ID=MS.gene58374.t1.exon2;Parent=MS.gene58374.t1 |
chr2.3 | CDS | 19262115 | 19262333 | 19262115 | ID=cds.MS.gene58374.t1;Parent=MS.gene58374.t1 |
chr2.3 | exon | 19262389 | 19262430 | 19262389 | ID=MS.gene58374.t1.exon3;Parent=MS.gene58374.t1 |
chr2.3 | CDS | 19262389 | 19262430 | 19262389 | ID=cds.MS.gene58374.t1;Parent=MS.gene58374.t1 |
Gene Sequence |
Protein sequence |