Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92366.t1 | XP_003610630.1 | 86 | 143 | 10 | 1 | 1 | 133 | 1 | 143 | 3.30E-56 | 227.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92366.t1 | Q05024 | 40.3 | 72 | 41 | 1 | 62 | 133 | 126 | 195 | 1.5e-09 | 63.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92366.t1 | G7K0Y0 | 86.0 | 143 | 10 | 1 | 1 | 133 | 1 | 143 | 2.4e-56 | 227.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene92366.t1 | TR | SWI/SNF-BAF60b |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene92366 | 0.856293 | 3.55E-62 | -1.69E-46 |
| MS.gene049171 | MS.gene92366 | 0.870243 | 1.69E-66 | -1.69E-46 |
| MS.gene049173 | MS.gene92366 | 0.82334 | 1.46E-53 | -1.69E-46 |
| MS.gene049217 | MS.gene92366 | 0.87489 | 4.74E-68 | -1.69E-46 |
| MS.gene049222 | MS.gene92366 | 0.865879 | 4.29E-65 | -1.69E-46 |
| MS.gene049285 | MS.gene92366 | 0.879301 | 1.39E-69 | -1.69E-46 |
| MS.gene049320 | MS.gene92366 | 0.858752 | 6.64E-63 | -1.69E-46 |
| MS.gene04939 | MS.gene92366 | 0.801583 | 8.41E-49 | -1.69E-46 |
| MS.gene049427 | MS.gene92366 | 0.838904 | 2.18E-57 | -1.69E-46 |
| MS.gene049609 | MS.gene92366 | 0.830662 | 2.59E-55 | -1.69E-46 |
| MS.gene049614 | MS.gene92366 | 0.831217 | 1.89E-55 | -1.69E-46 |
| MS.gene049615 | MS.gene92366 | 0.82067 | 6.07E-53 | -1.69E-46 |
| MS.gene049627 | MS.gene92366 | 0.833336 | 5.65E-56 | -1.69E-46 |
| MS.gene049760 | MS.gene92366 | 0.801934 | 7.12E-49 | -1.69E-46 |
| MS.gene049805 | MS.gene92366 | 0.839172 | 1.86E-57 | -1.69E-46 |
| MS.gene050076 | MS.gene92366 | 0.802531 | 5.37E-49 | -1.69E-46 |
| MS.gene050163 | MS.gene92366 | 0.901216 | 3.35E-78 | -1.69E-46 |
| MS.gene050165 | MS.gene92366 | 0.883791 | 3.33E-71 | -1.69E-46 |
| MS.gene050333 | MS.gene92366 | 0.856047 | 4.19E-62 | -1.69E-46 |
| MS.gene050353 | MS.gene92366 | -0.807556 | 4.77E-50 | -1.69E-46 |
| MS.gene050444 | MS.gene92366 | 0.824841 | 6.49E-54 | -1.69E-46 |
| MS.gene050475 | MS.gene92366 | -0.840859 | 6.75E-58 | -1.69E-46 |
| MS.gene050504 | MS.gene92366 | 0.857943 | 1.16E-62 | -1.69E-46 |
| MS.gene050518 | MS.gene92366 | 0.856146 | 3.92E-62 | -1.69E-46 |
| MS.gene050538 | MS.gene92366 | 0.826485 | 2.64E-54 | -1.69E-46 |
| MS.gene050541 | MS.gene92366 | -0.837747 | 4.33E-57 | -1.69E-46 |
| MS.gene050577 | MS.gene92366 | 0.816977 | 4.19E-52 | -1.69E-46 |
| MS.gene050593 | MS.gene92366 | 0.809214 | 2.11E-50 | -1.69E-46 |
| MS.gene050612 | MS.gene92366 | 0.854393 | 1.27E-61 | -1.69E-46 |
| MS.gene050675 | MS.gene92366 | 0.833123 | 6.39E-56 | -1.69E-46 |
| MS.gene050699 | MS.gene92366 | 0.861142 | 1.26E-63 | -1.69E-46 |
| MS.gene050747 | MS.gene92366 | 0.840324 | 9.32E-58 | -1.69E-46 |
| MS.gene050767 | MS.gene92366 | 0.846633 | 1.92E-59 | -1.69E-46 |
| MS.gene050770 | MS.gene92366 | 0.849997 | 2.26E-60 | -1.69E-46 |
| MS.gene050772 | MS.gene92366 | 0.846644 | 1.91E-59 | -1.69E-46 |
| MS.gene050781 | MS.gene92366 | 0.830898 | 2.27E-55 | -1.69E-46 |
| MS.gene050783 | MS.gene92366 | 0.802541 | 5.34E-49 | -1.69E-46 |
| MS.gene05080 | MS.gene92366 | 0.807825 | 4.18E-50 | -1.69E-46 |
| MS.gene050950 | MS.gene92366 | 0.829873 | 4.04E-55 | -1.69E-46 |
| MS.gene050986 | MS.gene92366 | 0.820993 | 5.11E-53 | -1.69E-46 |
| MS.gene05100 | MS.gene92366 | 0.894859 | 1.66E-75 | -1.69E-46 |
| MS.gene051228 | MS.gene92366 | 0.835355 | 1.76E-56 | -1.69E-46 |
| MS.gene051387 | MS.gene92366 | 0.809193 | 2.14E-50 | -1.69E-46 |
| MS.gene051551 | MS.gene92366 | 0.822629 | 2.14E-53 | -1.69E-46 |
| MS.gene051666 | MS.gene92366 | 0.872051 | 4.28E-67 | -1.69E-46 |
| MS.gene051694 | MS.gene92366 | 0.863146 | 3.07E-64 | -1.69E-46 |
| MS.gene051810 | MS.gene92366 | 0.858387 | 8.53E-63 | -1.69E-46 |
| MS.gene051858 | MS.gene92366 | 0.847266 | 1.29E-59 | -1.69E-46 |
| MS.gene051949 | MS.gene92366 | 0.840489 | 8.43E-58 | -1.69E-46 |
| MS.gene052164 | MS.gene92366 | 0.804299 | 2.31E-49 | -1.69E-46 |
| MS.gene052271 | MS.gene92366 | 0.860702 | 1.72E-63 | -1.69E-46 |
| MS.gene052290 | MS.gene92366 | 0.850453 | 1.68E-60 | -1.69E-46 |
| MS.gene052322 | MS.gene92366 | 0.818508 | 1.89E-52 | -1.69E-46 |
| MS.gene052379 | MS.gene92366 | 0.867311 | 1.50E-65 | -1.69E-46 |
| MS.gene052615 | MS.gene92366 | 0.836054 | 1.17E-56 | -1.69E-46 |
| MS.gene052670 | MS.gene92366 | 0.818094 | 2.34E-52 | -1.69E-46 |
| MS.gene052870 | MS.gene92366 | 0.810844 | 9.42E-51 | -1.69E-46 |
| MS.gene052872 | MS.gene92366 | 0.813498 | 2.48E-51 | -1.69E-46 |
| MS.gene053009 | MS.gene92366 | 0.888416 | 6.02E-73 | -1.69E-46 |
| MS.gene053103 | MS.gene92366 | 0.814675 | 1.37E-51 | -1.69E-46 |
| MS.gene053104 | MS.gene92366 | 0.826803 | 2.22E-54 | -1.69E-46 |
| MS.gene053107 | MS.gene92366 | 0.836196 | 1.08E-56 | -1.69E-46 |
| MS.gene053203 | MS.gene92366 | 0.818318 | 2.09E-52 | -1.69E-46 |
| MS.gene053207 | MS.gene92366 | 0.848568 | 5.64E-60 | -1.69E-46 |
| MS.gene053213 | MS.gene92366 | 0.856002 | 4.32E-62 | -1.69E-46 |
| MS.gene053284 | MS.gene92366 | 0.803352 | 3.63E-49 | -1.69E-46 |
| MS.gene053285 | MS.gene92366 | 0.805108 | 1.57E-49 | -1.69E-46 |
| MS.gene053286 | MS.gene92366 | 0.847899 | 8.64E-60 | -1.69E-46 |
| MS.gene053322 | MS.gene92366 | 0.889525 | 2.24E-73 | -1.69E-46 |
| MS.gene053436 | MS.gene92366 | 0.806103 | 9.68E-50 | -1.69E-46 |
| MS.gene053574 | MS.gene92366 | 0.806382 | 8.45E-50 | -1.69E-46 |
| MS.gene053579 | MS.gene92366 | 0.805589 | 1.24E-49 | -1.69E-46 |
| MS.gene053632 | MS.gene92366 | 0.879621 | 1.07E-69 | -1.69E-46 |
| MS.gene053915 | MS.gene92366 | 0.816469 | 5.44E-52 | -1.69E-46 |
| MS.gene054376 | MS.gene92366 | 0.834467 | 2.95E-56 | -1.69E-46 |
| MS.gene054408 | MS.gene92366 | 0.810723 | 1.00E-50 | -1.69E-46 |
| MS.gene054421 | MS.gene92366 | -0.80014 | 1.66E-48 | -1.69E-46 |
| MS.gene054595 | MS.gene92366 | 0.809646 | 1.71E-50 | -1.69E-46 |
| MS.gene054600 | MS.gene92366 | 0.856084 | 4.08E-62 | -1.69E-46 |
| MS.gene054642 | MS.gene92366 | 0.882805 | 7.66E-71 | -1.69E-46 |
| MS.gene05470 | MS.gene92366 | 0.81685 | 4.47E-52 | -1.69E-46 |
| MS.gene054802 | MS.gene92366 | 0.86629 | 3.18E-65 | -1.69E-46 |
| MS.gene054803 | MS.gene92366 | 0.861699 | 8.54E-64 | -1.69E-46 |
| MS.gene054804 | MS.gene92366 | 0.867917 | 9.61E-66 | -1.69E-46 |
| MS.gene054927 | MS.gene92366 | 0.806454 | 8.16E-50 | -1.69E-46 |
| MS.gene054954 | MS.gene92366 | 0.842856 | 2.00E-58 | -1.69E-46 |
| MS.gene05505 | MS.gene92366 | 0.802071 | 6.68E-49 | -1.69E-46 |
| MS.gene055206 | MS.gene92366 | 0.836682 | 8.11E-57 | -1.69E-46 |
| MS.gene055254 | MS.gene92366 | 0.83017 | 3.41E-55 | -1.69E-46 |
| MS.gene055362 | MS.gene92366 | 0.863661 | 2.12E-64 | -1.69E-46 |
| MS.gene055397 | MS.gene92366 | 0.865382 | 6.15E-65 | -1.69E-46 |
| MS.gene055412 | MS.gene92366 | 0.821835 | 3.27E-53 | -1.69E-46 |
| MS.gene055499 | MS.gene92366 | 0.88469 | 1.55E-71 | -1.69E-46 |
| MS.gene055502 | MS.gene92366 | 0.854803 | 9.65E-62 | -1.69E-46 |
| MS.gene055577 | MS.gene92366 | 0.850593 | 1.54E-60 | -1.69E-46 |
| MS.gene055636 | MS.gene92366 | 0.811123 | 8.19E-51 | -1.69E-46 |
| MS.gene055638 | MS.gene92366 | 0.812749 | 3.62E-51 | -1.69E-46 |
| MS.gene055647 | MS.gene92366 | 0.841793 | 3.83E-58 | -1.69E-46 |
| MS.gene055722 | MS.gene92366 | 0.809825 | 1.56E-50 | -1.69E-46 |
| MS.gene055748 | MS.gene92366 | 0.831954 | 1.25E-55 | -1.69E-46 |
| MS.gene055751 | MS.gene92366 | 0.811127 | 8.18E-51 | -1.69E-46 |
| MS.gene05592 | MS.gene92366 | 0.838442 | 2.87E-57 | -1.69E-46 |
| MS.gene055941 | MS.gene92366 | 0.834821 | 2.40E-56 | -1.69E-46 |
| MS.gene055956 | MS.gene92366 | -0.816334 | 5.83E-52 | -1.69E-46 |
| MS.gene056083 | MS.gene92366 | 0.870972 | 9.74E-67 | -1.69E-46 |
| MS.gene056374 | MS.gene92366 | 0.859369 | 4.34E-63 | -1.69E-46 |
| MS.gene056409 | MS.gene92366 | 0.800335 | 1.51E-48 | -1.69E-46 |
| MS.gene056449 | MS.gene92366 | 0.805287 | 1.44E-49 | -1.69E-46 |
| MS.gene056510 | MS.gene92366 | 0.81088 | 9.25E-51 | -1.69E-46 |
| MS.gene056550 | MS.gene92366 | -0.808694 | 2.73E-50 | -1.69E-46 |
| MS.gene056610 | MS.gene92366 | 0.819871 | 9.25E-53 | -1.69E-46 |
| MS.gene056657 | MS.gene92366 | 0.858154 | 1.00E-62 | -1.69E-46 |
| MS.gene056692 | MS.gene92366 | 0.833184 | 6.17E-56 | -1.69E-46 |
| MS.gene056796 | MS.gene92366 | 0.808907 | 2.46E-50 | -1.69E-46 |
| MS.gene056897 | MS.gene92366 | 0.801241 | 9.88E-49 | -1.69E-46 |
| MS.gene057011 | MS.gene92366 | 0.836254 | 1.04E-56 | -1.69E-46 |
| MS.gene057129 | MS.gene92366 | 0.894353 | 2.67E-75 | -1.69E-46 |
| MS.gene057146 | MS.gene92366 | 0.823841 | 1.11E-53 | -1.69E-46 |
| MS.gene057246 | MS.gene92366 | 0.830841 | 2.34E-55 | -1.69E-46 |
| MS.gene057295 | MS.gene92366 | 0.8182 | 2.22E-52 | -1.69E-46 |
| MS.gene057331 | MS.gene92366 | 0.81631 | 5.91E-52 | -1.69E-46 |
| MS.gene057416 | MS.gene92366 | 0.880591 | 4.84E-70 | -1.69E-46 |
| MS.gene057658 | MS.gene92366 | 0.834275 | 3.29E-56 | -1.69E-46 |
| MS.gene057831 | MS.gene92366 | 0.854121 | 1.52E-61 | -1.69E-46 |
| MS.gene058019 | MS.gene92366 | 0.817574 | 3.07E-52 | -1.69E-46 |
| MS.gene058293 | MS.gene92366 | 0.806915 | 6.52E-50 | -1.69E-46 |
| MS.gene058323 | MS.gene92366 | 0.832973 | 6.96E-56 | -1.69E-46 |
| MS.gene05837 | MS.gene92366 | 0.809004 | 2.34E-50 | -1.69E-46 |
| MS.gene058419 | MS.gene92366 | 0.874663 | 5.66E-68 | -1.69E-46 |
| MS.gene058544 | MS.gene92366 | 0.885986 | 5.06E-72 | -1.69E-46 |
| MS.gene058660 | MS.gene92366 | 0.823202 | 1.57E-53 | -1.69E-46 |
| MS.gene058723 | MS.gene92366 | 0.855175 | 7.52E-62 | -1.69E-46 |
| MS.gene058773 | MS.gene92366 | 0.872485 | 3.07E-67 | -1.69E-46 |
| MS.gene058838 | MS.gene92366 | 0.822139 | 2.78E-53 | -1.69E-46 |
| MS.gene05883 | MS.gene92366 | 0.830747 | 2.47E-55 | -1.69E-46 |
| MS.gene059022 | MS.gene92366 | 0.866574 | 2.58E-65 | -1.69E-46 |
| MS.gene059023 | MS.gene92366 | 0.853847 | 1.82E-61 | -1.69E-46 |
| MS.gene059029 | MS.gene92366 | 0.859075 | 5.31E-63 | -1.69E-46 |
| MS.gene059102 | MS.gene92366 | -0.828985 | 6.63E-55 | -1.69E-46 |
| MS.gene05914 | MS.gene92366 | 0.80524 | 1.47E-49 | -1.69E-46 |
| MS.gene05934 | MS.gene92366 | 0.847204 | 1.34E-59 | -1.69E-46 |
| MS.gene059536 | MS.gene92366 | 0.865433 | 5.93E-65 | -1.69E-46 |
| MS.gene059677 | MS.gene92366 | 0.887881 | 9.67E-73 | -1.69E-46 |
| MS.gene059718 | MS.gene92366 | 0.862478 | 4.92E-64 | -1.69E-46 |
| MS.gene059756 | MS.gene92366 | 0.834833 | 2.38E-56 | -1.69E-46 |
| MS.gene059858 | MS.gene92366 | 0.81504 | 1.13E-51 | -1.69E-46 |
| MS.gene059902 | MS.gene92366 | 0.851645 | 7.76E-61 | -1.69E-46 |
| MS.gene059960 | MS.gene92366 | 0.884835 | 1.37E-71 | -1.69E-46 |
| MS.gene060336 | MS.gene92366 | -0.806182 | 9.31E-50 | -1.69E-46 |
| MS.gene060675 | MS.gene92366 | 0.812554 | 4.00E-51 | -1.69E-46 |
| MS.gene060728 | MS.gene92366 | 0.808583 | 2.88E-50 | -1.69E-46 |
| MS.gene060762 | MS.gene92366 | 0.838478 | 2.81E-57 | -1.69E-46 |
| MS.gene06077 | MS.gene92366 | 0.82739 | 1.61E-54 | -1.69E-46 |
| MS.gene060804 | MS.gene92366 | 0.804911 | 1.72E-49 | -1.69E-46 |
| MS.gene06092 | MS.gene92366 | 0.890672 | 7.97E-74 | -1.69E-46 |
| MS.gene061150 | MS.gene92366 | 0.916139 | 2.55E-85 | -1.69E-46 |
| MS.gene061171 | MS.gene92366 | 0.801806 | 7.57E-49 | -1.69E-46 |
| MS.gene061200 | MS.gene92366 | 0.889696 | 1.92E-73 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92366.t1 | MTR_5g005200 | 88.811 | 143 | 6 | 1 | 1 | 133 | 1 | 143 | 4.24e-78 | 227 |
| MS.gene92366.t1 | MTR_5g025500 | 42.105 | 95 | 55 | 0 | 38 | 132 | 37 | 131 | 1.58e-24 | 91.7 |
| MS.gene92366.t1 | MTR_3g053350 | 51.327 | 113 | 11 | 5 | 21 | 129 | 29 | 101 | 1.16e-18 | 81.3 |
| MS.gene92366.t1 | MTR_3g055330 | 41.111 | 90 | 51 | 2 | 44 | 132 | 147 | 235 | 1.33e-15 | 71.6 |
| MS.gene92366.t1 | MTR_3g055330 | 41.111 | 90 | 51 | 2 | 44 | 132 | 147 | 235 | 2.04e-15 | 71.2 |
| MS.gene92366.t1 | MTR_5g018010 | 40.580 | 69 | 40 | 1 | 62 | 130 | 61 | 128 | 4.10e-15 | 69.7 |
| MS.gene92366.t1 | MTR_5g018010 | 37.805 | 82 | 50 | 1 | 51 | 132 | 183 | 263 | 2.13e-14 | 67.8 |
| MS.gene92366.t1 | MTR_5g018010 | 40.580 | 69 | 40 | 1 | 62 | 130 | 138 | 205 | 1.18e-14 | 69.3 |
| MS.gene92366.t1 | MTR_5g018010 | 37.805 | 82 | 50 | 1 | 51 | 132 | 260 | 340 | 5.25e-14 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92366.t1 | AT2G14880 | 55.944 | 143 | 50 | 6 | 1 | 132 | 1 | 141 | 4.37e-42 | 136 |
| MS.gene92366.t1 | AT4G34290 | 56.034 | 116 | 39 | 2 | 29 | 132 | 29 | 144 | 1.03e-34 | 117 |
| MS.gene92366.t1 | AT3G03590 | 52.564 | 78 | 37 | 0 | 55 | 132 | 63 | 140 | 2.18e-25 | 94.0 |
| MS.gene92366.t1 | AT1G31760 | 40.594 | 101 | 59 | 1 | 32 | 131 | 8 | 108 | 6.58e-25 | 92.0 |
| MS.gene92366.t1 | AT2G35605 | 47.253 | 91 | 48 | 0 | 41 | 131 | 15 | 105 | 1.22e-24 | 91.3 |
| MS.gene92366.t1 | AT2G14880 | 56.471 | 85 | 32 | 4 | 13 | 94 | 21 | 103 | 3.94e-21 | 82.0 |
| MS.gene92366.t1 | AT2G14880 | 56.471 | 85 | 32 | 4 | 13 | 94 | 21 | 103 | 3.94e-21 | 82.0 |
| MS.gene92366.t1 | AT4G26810 | 34.000 | 100 | 61 | 2 | 32 | 131 | 1 | 95 | 1.57e-15 | 67.8 |
| MS.gene92366.t1 | AT4G26810 | 34.000 | 100 | 61 | 2 | 32 | 131 | 1 | 95 | 1.57e-15 | 67.8 |
| MS.gene92366.t1 | AT4G22360 | 37.624 | 101 | 54 | 3 | 40 | 132 | 173 | 272 | 1.90e-15 | 71.6 |
| MS.gene92366.t1 | AT1G49520 | 37.209 | 86 | 50 | 2 | 45 | 130 | 243 | 324 | 1.87e-13 | 66.2 |
| MS.gene92366.t1 | AT1G49520 | 32.895 | 76 | 50 | 1 | 55 | 130 | 101 | 175 | 1.99e-11 | 60.5 |
| MS.gene92366.t1 | AT3G48600 | 33.019 | 106 | 67 | 2 | 32 | 133 | 8 | 113 | 6.20e-13 | 62.8 |
| MS.gene92366.t1 | AT3G19080 | 35.165 | 91 | 56 | 2 | 40 | 130 | 250 | 337 | 8.30e-13 | 64.3 |
| MS.gene92366.t1 | AT3G19080 | 34.211 | 76 | 49 | 1 | 55 | 130 | 115 | 189 | 1.26e-11 | 60.8 |
| MS.gene92366.t1 | AT3G48600 | 33.019 | 106 | 67 | 2 | 32 | 133 | 8 | 113 | 1.41e-12 | 62.8 |
| MS.gene92366.t1 | AT3G19080 | 34.783 | 92 | 57 | 2 | 40 | 131 | 250 | 338 | 1.52e-12 | 63.5 |
| MS.gene92366.t1 | AT3G19080 | 33.766 | 77 | 50 | 1 | 55 | 131 | 115 | 190 | 1.93e-11 | 60.5 |
| MS.gene92366.t1 | AT3G19080 | 34.783 | 92 | 57 | 2 | 40 | 131 | 250 | 338 | 1.52e-12 | 63.5 |
| MS.gene92366.t1 | AT3G19080 | 33.766 | 77 | 50 | 1 | 55 | 131 | 115 | 190 | 1.93e-11 | 60.5 |
| MS.gene92366.t1 | AT3G19080 | 34.783 | 92 | 57 | 2 | 40 | 131 | 250 | 338 | 1.56e-12 | 63.5 |
| MS.gene92366.t1 | AT3G19080 | 33.766 | 77 | 50 | 1 | 55 | 131 | 115 | 190 | 2.03e-11 | 60.5 |
Find 48 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCAAATGCTCTTGAGGGCT+TGG | 0.201712 | 5.1:-252722 | None:intergenic |
| GTGGCCTTTGCCTTCAATTA+AGG | 0.272510 | 5.1:-253744 | None:intergenic |
| GCTCTTGAGGGCTTGGGTTC+GGG | 0.285856 | 5.1:-252715 | None:intergenic |
| TGCTCTTGAGGGCTTGGGTT+CGG | 0.309630 | 5.1:-252716 | None:intergenic |
| CCCAAGCCCTCAAGAGCATT+TGG | 0.313567 | 5.1:+252721 | MS.gene92366:CDS |
| GAGCATTTGGGCCCACATTA+AGG | 0.313899 | 5.1:+252734 | MS.gene92366:CDS |
| CTTGGAGTCCTGAGAGTTAG+AGG | 0.343205 | 5.1:-252531 | None:intergenic |
| CCAAATGCTCTTGAGGGCTT+GGG | 0.352861 | 5.1:-252721 | None:intergenic |
| GGCTTGGGTTCGGGAAATCT+CGG | 0.358689 | 5.1:-252706 | None:intergenic |
| GTTGATATGCTTGAGATTGC+TGG | 0.364505 | 5.1:+253703 | MS.gene92366:CDS |
| GCCCTCACTTCCTTAATTGA+AGG | 0.384410 | 5.1:+253734 | MS.gene92366:CDS |
| CCGACGAGGTCTTGCATCTC+GGG | 0.390790 | 5.1:-252678 | None:intergenic |
| GCCGACGAGGTCTTGCATCT+CGG | 0.410466 | 5.1:-252679 | None:intergenic |
| AAACTGAAGAAGGTATTTGC+AGG | 0.431242 | 5.1:+253670 | MS.gene92366:CDS |
| CCAAGCCCTCAAGAGCATTT+GGG | 0.438538 | 5.1:+252722 | MS.gene92366:CDS |
| GCTTGGGTTCGGGAAATCTC+GGG | 0.463473 | 5.1:-252705 | None:intergenic |
| TCCCACACCTTCGTTGCGTA+TGG | 0.464306 | 5.1:+252563 | MS.gene92366:CDS |
| CATCTCCTCCTCTAACTCTC+AGG | 0.478833 | 5.1:+252523 | MS.gene92366:CDS |
| CATTAAGGAACACAATCTTC+AGG | 0.486338 | 5.1:+252749 | MS.gene92366:CDS |
| GTCTCTCAGCCTCCACCCAC+CGG | 0.498374 | 5.1:+252615 | MS.gene92366:CDS |
| GCCTTCAATTAAGGAAGTGA+GGG | 0.502350 | 5.1:-253735 | None:intergenic |
| GTGGGCCCAAATGCTCTTGA+GGG | 0.503891 | 5.1:-252727 | None:intergenic |
| CTCTAACTCTCAGGACTCCA+AGG | 0.525205 | 5.1:+252532 | MS.gene92366:CDS |
| TGTGGGCCCAAATGCTCTTG+AGG | 0.532300 | 5.1:-252728 | None:intergenic |
| GAAGATTGTGTTCCTTAATG+TGG | 0.537334 | 5.1:-252746 | None:intergenic |
| AGTGAAGATGGCGGTTTCAA+TGG | 0.537531 | 5.1:+252482 | None:intergenic |
| AGGAGATGATAATAATAGTC+CGG | 0.546560 | 5.1:-252508 | None:intergenic |
| GGTGGGTGGAGGCTGAGAGA+CGG | 0.548280 | 5.1:-252613 | None:intergenic |
| CGGTGGCAGAAGTAACTGTT+CGG | 0.553786 | 5.1:-252593 | None:intergenic |
| TGCCTTCAATTAAGGAAGTG+AGG | 0.555494 | 5.1:-253736 | None:intergenic |
| AAGATTGTGTTCCTTAATGT+GGG | 0.565657 | 5.1:-252745 | None:intergenic |
| AGCCATACGCAACGAAGGTG+TGG | 0.571765 | 5.1:-252565 | None:intergenic |
| GCCATACGCAACGAAGGTGT+GGG | 0.575259 | 5.1:-252564 | None:intergenic |
| CTGTGATGAGAAACTGAAGA+AGG | 0.578111 | 5.1:+253660 | MS.gene92366:CDS |
| ATGGCGGTTTCAATGGCTAC+CGG | 0.582248 | 5.1:+252489 | MS.gene92366:CDS |
| GGGTGGAGGCTGAGAGACGG+TGG | 0.583952 | 5.1:-252610 | None:intergenic |
| GGTGTGGGAAACGCAAACCT+TGG | 0.584167 | 5.1:-252549 | None:intergenic |
| AACTGAAGAAGGTATTTGCA+GGG | 0.589332 | 5.1:+253671 | MS.gene92366:CDS |
| CCCACCGGAGGCAAAATTCG+CGG | 0.592965 | 5.1:+252630 | MS.gene92366:CDS |
| AAATCTCGGGTTGGCCGACG+AGG | 0.609292 | 5.1:-252692 | None:intergenic |
| GGGTTCGGGAAATCTCGGGT+TGG | 0.610231 | 5.1:-252701 | None:intergenic |
| TCTCAGCCTCCACCCACCGG+AGG | 0.623094 | 5.1:+252618 | MS.gene92366:CDS |
| CGACGAGGTCTTGCATCTCG+GGG | 0.623606 | 5.1:-252677 | None:intergenic |
| CCCGAGATGCAAGACCTCGT+CGG | 0.633591 | 5.1:+252678 | MS.gene92366:CDS |
| GGAGTCCTGAGAGTTAGAGG+AGG | 0.667796 | 5.1:-252528 | None:intergenic |
| AGTGGAGCCATACGCAACGA+AGG | 0.673850 | 5.1:-252570 | None:intergenic |
| GACGAGGTCTTGCATCTCGG+GGG | 0.684378 | 5.1:-252676 | None:intergenic |
| GCAGAAGTAACTGTTCGGAG+TGG | 0.693933 | 5.1:-252588 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAAAAACAAATAATTTGTA+CGG | - | chr5.1:252838-252857 | None:intergenic | 15.0% |
| !!! | TTATTTTTAACCAACTAAAT+GGG | + | chr5.1:253113-253132 | MS.gene92366:intron | 15.0% |
| !!! | TTTAGGTGAAATTTTAAAAA+AGG | - | chr5.1:252815-252834 | None:intergenic | 15.0% |
| !!! | TTTATTTTTAACCAACTAAA+TGG | + | chr5.1:253112-253131 | MS.gene92366:intron | 15.0% |
| !! | AACATGTAGTTTAGATTATA+TGG | - | chr5.1:253368-253387 | None:intergenic | 20.0% |
| !! | ATATTATTAGGCACTAATTT+GGG | + | chr5.1:253020-253039 | MS.gene92366:intron | 20.0% |
| !! | CAAAATAAAACATGAACAAA+TGG | - | chr5.1:252971-252990 | None:intergenic | 20.0% |
| !! | GTCTGAATGAATATATTATT+AGG | + | chr5.1:253008-253027 | MS.gene92366:intron | 20.0% |
| !! | TAAGTTGTTAGTTATTAAGA+TGG | + | chr5.1:252890-252909 | MS.gene92366:intron | 20.0% |
| !! | TATATTATTAGGCACTAATT+TGG | + | chr5.1:253019-253038 | MS.gene92366:intron | 20.0% |
| !!! | TATGCAATTCTGTTTTATAA+TGG | + | chr5.1:253308-253327 | MS.gene92366:intron | 20.0% |
| ! | AAAAGAATGAAAACGAGATT+TGG | - | chr5.1:253095-253114 | None:intergenic | 25.0% |
| ! | CATTCAATTTATGGATGATA+CGG | - | chr5.1:253509-253528 | None:intergenic | 25.0% |
| ! | TATATTCATTCAGACCAAAT+TGG | - | chr5.1:253003-253022 | None:intergenic | 25.0% |
| !! | ACAAATAATTTGTACGGTTT+AGG | - | chr5.1:252832-252851 | None:intergenic | 25.0% |
| !! | ATGGATTCTATTGTCAATTT+TGG | + | chr5.1:253340-253359 | MS.gene92366:intron | 25.0% |
| !!! | CAAAAAGTTGATGTACAAAT+TGG | - | chr5.1:253142-253161 | None:intergenic | 25.0% |
| AAATTGGATTCCCATTTAGT+TGG | - | chr5.1:253126-253145 | None:intergenic | 30.0% | |
| AAATTTGTGCAATTGAAACG+CGG | - | chr5.1:253273-253292 | None:intergenic | 30.0% | |
| AAGATTGTGTTCCTTAATGT+GGG | - | chr5.1:252748-252767 | None:intergenic | 30.0% | |
| AGGAGATGATAATAATAGTC+CGG | - | chr5.1:252511-252530 | None:intergenic | 30.0% | |
| CCATAAATTGAATGTTCTCT+GGG | + | chr5.1:253515-253534 | MS.gene92366:intron | 30.0% | |
| TAAACTGCATAGATTCAGAA+TGG | + | chr5.1:252867-252886 | MS.gene92366:intron | 30.0% | |
| TCCATAAATTGAATGTTCTC+TGG | + | chr5.1:253514-253533 | MS.gene92366:intron | 30.0% | |
| TGGGAATAATCGGTTATTAT+GGG | + | chr5.1:253039-253058 | MS.gene92366:intron | 30.0% | |
| TTGGGAATAATCGGTTATTA+TGG | + | chr5.1:253038-253057 | MS.gene92366:intron | 30.0% | |
| ! | TTTATAATGGTTGATGCTGA+TGG | + | chr5.1:253321-253340 | MS.gene92366:intron | 30.0% |
| !! | TTTTGACTCAACAACCAATT+TGG | + | chr5.1:252986-253005 | MS.gene92366:intron | 30.0% |
| AAAGCAGAGTTAGTACTTGA+TGG | - | chr5.1:253249-253268 | None:intergenic | 35.0% | |
| ACATAATTAACCTGTCTGTC+TGG | + | chr5.1:253223-253242 | MS.gene92366:intron | 35.0% | |
| ATGTAGAACAAGTGCAAACA+AGG | - | chr5.1:253193-253212 | None:intergenic | 35.0% | |
| CATTAAGGAACACAATCTTC+AGG | + | chr5.1:252749-252768 | MS.gene92366:CDS | 35.0% | |
| CCCAGAGAACATTCAATTTA+TGG | - | chr5.1:253518-253537 | None:intergenic | 35.0% | |
| CTGAACGTATTTATGAATGC+AGG | - | chr5.1:253567-253586 | None:intergenic | 35.0% | |
| GAAGATTGTGTTCCTTAATG+TGG | - | chr5.1:252749-252768 | None:intergenic | 35.0% | |
| GGAATAATCGGTTATTATGG+GGG | + | chr5.1:253041-253060 | MS.gene92366:intron | 35.0% | |
| GGCACTAATTTGGGAATAAT+CGG | + | chr5.1:253029-253048 | MS.gene92366:intron | 35.0% | |
| GGGAATAATCGGTTATTATG+GGG | + | chr5.1:253040-253059 | MS.gene92366:intron | 35.0% | |
| TATCCTCAAGAGAAAGAGAA+AGG | - | chr5.1:252787-252806 | None:intergenic | 35.0% | |
| TATGGGGGCTAAATTCAATT+GGG | + | chr5.1:253056-253075 | MS.gene92366:intron | 35.0% | |
| TTATGAATGCAGGATAGCAT+TGG | - | chr5.1:253557-253576 | None:intergenic | 35.0% | |
| TTATGGGGGCTAAATTCAAT+TGG | + | chr5.1:253055-253074 | MS.gene92366:intron | 35.0% | |
| ! | GAATAAGCCTCTTTTTCTCA+GGG | - | chr5.1:253639-253658 | None:intergenic | 35.0% |
| !! | AAACTGAAGAAGGTATTTGC+AGG | + | chr5.1:253670-253689 | MS.gene92366:CDS | 35.0% |
| !! | AACTGAAGAAGGTATTTGCA+GGG | + | chr5.1:253671-253690 | MS.gene92366:CDS | 35.0% |
| CTGTGATGAGAAACTGAAGA+AGG | + | chr5.1:253660-253679 | MS.gene92366:CDS | 40.0% | |
| GTCTGTACAAGAGTAGTTGT+AGG | - | chr5.1:253460-253479 | None:intergenic | 40.0% | |
| GTTGATATGCTTGAGATTGC+TGG | + | chr5.1:253703-253722 | MS.gene92366:CDS | 40.0% | |
| TACGTTCAGCAACGTTTGAT+TGG | + | chr5.1:253578-253597 | MS.gene92366:intron | 40.0% | |
| TCTCCTTTCTCTTTCTCTTG+AGG | + | chr5.1:252781-252800 | MS.gene92366:intron | 40.0% | |
| TTCAGAACCCTGAGAAAAAG+AGG | + | chr5.1:253629-253648 | MS.gene92366:intron | 40.0% | |
| ! | CGAATAAGCCTCTTTTTCTC+AGG | - | chr5.1:253640-253659 | None:intergenic | 40.0% |
| ! | GCAGGATAGCATTGGATTAA+TGG | - | chr5.1:253549-253568 | None:intergenic | 40.0% |
| !!! | ATCTCGGGGGAGATTTTTTT+AGG | - | chr5.1:252666-252685 | None:intergenic | 40.0% |
| ! | AATACCGCGAATTTTGCCTC+CGG | - | chr5.1:252637-252656 | None:intergenic | 45.0% |
| ATGGCGGTTTCAATGGCTAC+CGG | + | chr5.1:252489-252508 | MS.gene92366:CDS | 50.0% | |
| CATCTCCTCCTCTAACTCTC+AGG | + | chr5.1:252523-252542 | MS.gene92366:CDS | 50.0% | |
| CCAAATGCTCTTGAGGGCTT+GGG | - | chr5.1:252724-252743 | None:intergenic | 50.0% | |
| CGGTGGCAGAAGTAACTGTT+CGG | - | chr5.1:252596-252615 | None:intergenic | 50.0% | |
| CTCTAACTCTCAGGACTCCA+AGG | + | chr5.1:252532-252551 | MS.gene92366:CDS | 50.0% | |
| CTTGGAGTCCTGAGAGTTAG+AGG | - | chr5.1:252534-252553 | None:intergenic | 50.0% | |
| GAGCATTTGGGCCCACATTA+AGG | + | chr5.1:252734-252753 | MS.gene92366:CDS | 50.0% | |
| GCAGAAGTAACTGTTCGGAG+TGG | - | chr5.1:252591-252610 | None:intergenic | 50.0% | |
| ! | TACTTGATGGCCAGACAGAC+AGG | - | chr5.1:253236-253255 | None:intergenic | 50.0% |
| !! | CCAAGCCCTCAAGAGCATTT+GGG | + | chr5.1:252722-252741 | MS.gene92366:CDS | 50.0% |
| AGCCATACGCAACGAAGGTG+TGG | - | chr5.1:252568-252587 | None:intergenic | 55.0% | |
| AGTGGAGCCATACGCAACGA+AGG | - | chr5.1:252573-252592 | None:intergenic | 55.0% | |
| CCCAAATGCTCTTGAGGGCT+TGG | - | chr5.1:252725-252744 | None:intergenic | 55.0% | |
| GCTTGGGTTCGGGAAATCTC+GGG | - | chr5.1:252708-252727 | None:intergenic | 55.0% | |
| GGAGTCCTGAGAGTTAGAGG+AGG | - | chr5.1:252531-252550 | None:intergenic | 55.0% | |
| GGCTTGGGTTCGGGAAATCT+CGG | - | chr5.1:252709-252728 | None:intergenic | 55.0% | |
| GGTGTGGGAAACGCAAACCT+TGG | - | chr5.1:252552-252571 | None:intergenic | 55.0% | |
| GTGGGCCCAAATGCTCTTGA+GGG | - | chr5.1:252730-252749 | None:intergenic | 55.0% | |
| TCCCACACCTTCGTTGCGTA+TGG | + | chr5.1:252563-252582 | MS.gene92366:CDS | 55.0% | |
| TGCTCTTGAGGGCTTGGGTT+CGG | - | chr5.1:252719-252738 | None:intergenic | 55.0% | |
| TGTGGGCCCAAATGCTCTTG+AGG | - | chr5.1:252731-252750 | None:intergenic | 55.0% | |
| ! | GCCATACGCAACGAAGGTGT+GGG | - | chr5.1:252567-252586 | None:intergenic | 55.0% |
| !! | CCCAAGCCCTCAAGAGCATT+TGG | + | chr5.1:252721-252740 | MS.gene92366:CDS | 55.0% |
| CCCACCGGAGGCAAAATTCG+CGG | + | chr5.1:252630-252649 | MS.gene92366:CDS | 60.0% | |
| CCCGAGATGCAAGACCTCGT+CGG | + | chr5.1:252678-252697 | MS.gene92366:CDS | 60.0% | |
| CCGACGAGGTCTTGCATCTC+GGG | - | chr5.1:252681-252700 | None:intergenic | 60.0% | |
| CGACGAGGTCTTGCATCTCG+GGG | - | chr5.1:252680-252699 | None:intergenic | 60.0% | |
| GACGAGGTCTTGCATCTCGG+GGG | - | chr5.1:252679-252698 | None:intergenic | 60.0% | |
| GCCGACGAGGTCTTGCATCT+CGG | - | chr5.1:252682-252701 | None:intergenic | 60.0% | |
| GCTCTTGAGGGCTTGGGTTC+GGG | - | chr5.1:252718-252737 | None:intergenic | 60.0% | |
| GGGTTCGGGAAATCTCGGGT+TGG | - | chr5.1:252704-252723 | None:intergenic | 60.0% | |
| ! | ACCGCGAATTTTGCCTCCGG+TGG | - | chr5.1:252634-252653 | None:intergenic | 60.0% |
| ! | ATTTTGCCTCCGGTGGGTGG+AGG | - | chr5.1:252627-252646 | None:intergenic | 60.0% |
| ! | CCGCGAATTTTGCCTCCGGT+GGG | - | chr5.1:252633-252652 | None:intergenic | 60.0% |
| ! | CGAATTTTGCCTCCGGTGGG+TGG | - | chr5.1:252630-252649 | None:intergenic | 60.0% |
| !! | AAATCTCGGGTTGGCCGACG+AGG | - | chr5.1:252695-252714 | None:intergenic | 60.0% |
| GGTGGGTGGAGGCTGAGAGA+CGG | - | chr5.1:252616-252635 | None:intergenic | 65.0% | |
| GTCTCTCAGCCTCCACCCAC+CGG | + | chr5.1:252615-252634 | MS.gene92366:CDS | 65.0% | |
| GGGTGGAGGCTGAGAGACGG+TGG | - | chr5.1:252613-252632 | None:intergenic | 70.0% | |
| TCTCAGCCTCCACCCACCGG+AGG | + | chr5.1:252618-252637 | MS.gene92366:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 252489 | 253753 | 252489 | ID=MS.gene92366 |
| chr5.1 | mRNA | 252489 | 253753 | 252489 | ID=MS.gene92366.t1;Parent=MS.gene92366 |
| chr5.1 | exon | 252489 | 252770 | 252489 | ID=MS.gene92366.t1.exon1;Parent=MS.gene92366.t1 |
| chr5.1 | CDS | 252489 | 252770 | 252489 | ID=cds.MS.gene92366.t1;Parent=MS.gene92366.t1 |
| chr5.1 | exon | 253634 | 253753 | 253634 | ID=MS.gene92366.t1.exon2;Parent=MS.gene92366.t1 |
| chr5.1 | CDS | 253634 | 253753 | 253634 | ID=cds.MS.gene92366.t1;Parent=MS.gene92366.t1 |
| Gene Sequence |
| Protein sequence |
