AlfalfaGEDB | MS.gene32234

M. sativa cultivar XinJiangDaYe / MS.gene32234

KEGG: -
GO: GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00160.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32234.t1	XP_013445429.1	95.8	428	14	2	1	428	1	424	8.90E-228	799.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32234.t1	P82869	61.5	465	136	7	1	428	1	459	1.2e-148	527.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32234.t1	A0A072U108	95.8	428	14	2	1	428	1	424	6.4e-228	799.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene32234	0.820228	7.67E-53	-1.69E-46
MS.gene049171	MS.gene32234	0.91752	4.80E-86	-1.69E-46
MS.gene049173	MS.gene32234	0.881019	3.40E-70	-1.69E-46
MS.gene049217	MS.gene32234	0.908955	9.70E-82	-1.69E-46
MS.gene049222	MS.gene32234	0.90591	2.60E-80	-1.69E-46
MS.gene049232	MS.gene32234	0.843439	1.40E-58	-1.69E-46
MS.gene049285	MS.gene32234	0.946706	2.76E-105	-1.69E-46
MS.gene049320	MS.gene32234	0.918104	2.35E-86	-1.69E-46
MS.gene04939	MS.gene32234	0.833537	5.04E-56	-1.69E-46
MS.gene049425	MS.gene32234	-0.808078	3.70E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32234.t1	MTR_8g059435	95.794	428	14	2	1	428	1	424	0.0	830
MS.gene32234.t1	MTR_6g007607	27.373	453	252	18	2	425	45	449	3.39e-31	124

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32234.t1	AT3G15520	61.987	463	131	7	1	425	1	456	0.0	545
MS.gene32234.t1	AT3G15520	61.987	463	131	7	1	425	1	456	0.0	545
MS.gene32234.t1	AT3G15520	74.684	316	79	1	111	425	1	316	4.24e-173	487
MS.gene32234.t1	AT3G15520	55.914	372	119	7	1	334	1	365	1.17e-129	379
MS.gene32234.t1	AT3G01480	25.986	431	279	12	15	425	21	431	1.12e-33	131
MS.gene32234.t1	AT3G01480	25.893	336	215	9	15	333	21	339	2.09e-21	95.5

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Find 112 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTTATGGAACAATGGA+GGG	0.584507	8.3:+48184445	MS.gene32234:CDS
AAAGGGTGGTGGCGAGTGAT+CGG	0.512904	8.3:-48183359	None:intergenic
AAATGATATCCCTCCTAAGC+CGG	0.522397	8.3:-48188225	None:intergenic
AACCATGGAACTGAACTGAA+CGG	0.659365	8.3:-48183525	None:intergenic
AACCTTATGGAACAATGGAG+GGG	0.632285	8.3:+48184446	MS.gene32234:CDS
AACTTTCCTTCGGCAACACA+AGG	0.546212	8.3:-48188461	None:intergenic
AAGATATTTCGTATCTGCTG+AGG	0.558328	8.3:+48184410	MS.gene32234:CDS
AAGGGGCTCAAATTGTCCAG+CGG	0.695442	8.3:-48187753	None:intergenic
AAGTATACCAGCGGAACTGA+AGG	0.574421	8.3:+48185170	MS.gene32234:CDS
AAGTGGTTACAATGTTCCCT+TGG	0.582253	8.3:+48187721	MS.gene32234:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATAACTCTCGAGTTTAC+AGG	+	chr8.3:48184636-48184655	MS.gene32234:intron	30.0%
ACAATAAACAACGGTATACA+AGG	+	chr8.3:48184183-48184202	MS.gene32234:intron	30.0%
AGACCTACTATATGATAAAG+TGG	+	chr8.3:48184681-48184700	MS.gene32234:intron	30.0%
AGGTTTCAATAATTCTTGTG+TGG	+	chr8.3:48183812-48183831	MS.gene32234:intron	30.0%
ATAGGATTCATGTGCAATAT+AGG	+	chr8.3:48184608-48184627	MS.gene32234:intron	30.0%
ATATAGAAGATGCAAACCAT+AGG	+	chr8.3:48184590-48184609	MS.gene32234:intron	30.0%
ATGCATTGAAAGTTTACTGT+TGG	+	chr8.3:48186618-48186637	MS.gene32234:intron	30.0%
ATTAGAGGGAGTAACTAAAT+AGG	-	chr8.3:48184024-48184043	None:intergenic	30.0%
ATTTCGGTCAATTTAACTCA+GGG	+	chr8.3:48185349-48185368	MS.gene32234:intron	30.0%
CAAAGGCTTAAAAGATGTTA+TGG	-	chr8.3:48184976-48184995	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	48183326	48188485	48183326	ID=MS.gene32234
chr8.3	mRNA	48183326	48188485	48183326	ID=MS.gene32234.t1;Parent=MS.gene32234
chr8.3	exon	48183326	48183670	48183326	ID=MS.gene32234.t1.exon1;Parent=MS.gene32234.t1
chr8.3	CDS	48183326	48183670	48183326	ID=cds.MS.gene32234.t1;Parent=MS.gene32234.t1
chr8.3	exon	48184400	48184489	48184400	ID=MS.gene32234.t1.exon2;Parent=MS.gene32234.t1
chr8.3	CDS	48184400	48184489	48184400	ID=cds.MS.gene32234.t1;Parent=MS.gene32234.t1
chr8.3	exon	48185138	48185233	48185138	ID=MS.gene32234.t1.exon3;Parent=MS.gene32234.t1
chr8.3	CDS	48185138	48185233	48185138	ID=cds.MS.gene32234.t1;Parent=MS.gene32234.t1
chr8.3	exon	48185664	48185771	48185664	ID=MS.gene32234.t1.exon4;Parent=MS.gene32234.t1
chr8.3	CDS	48185664	48185771	48185664	ID=cds.MS.gene32234.t1;Parent=MS.gene32234.t1
chr8.3	exon	48185906	48185955	48185906	ID=MS.gene32234.t1.exon5;Parent=MS.gene32234.t1
chr8.3	CDS	48185906	48185955	48185906	ID=cds.MS.gene32234.t1;Parent=MS.gene32234.t1
chr8.3	exon	48186176	48186275	48186176	ID=MS.gene32234.t1.exon6;Parent=MS.gene32234.t1
chr8.3	CDS	48186176	48186275	48186176	ID=cds.MS.gene32234.t1;Parent=MS.gene32234.t1
chr8.3	exon	48186684	48186737	48186684	ID=MS.gene32234.t1.exon7;Parent=MS.gene32234.t1
chr8.3	CDS	48186684	48186737	48186684	ID=cds.MS.gene32234.t1;Parent=MS.gene32234.t1
chr8.3	exon	48187641	48187799	48187641	ID=MS.gene32234.t1.exon8;Parent=MS.gene32234.t1
chr8.3	CDS	48187641	48187799	48187641	ID=cds.MS.gene32234.t1;Parent=MS.gene32234.t1
chr8.3	exon	48187894	48188016	48187894	ID=MS.gene32234.t1.exon9;Parent=MS.gene32234.t1
chr8.3	CDS	48187894	48188016	48187894	ID=cds.MS.gene32234.t1;Parent=MS.gene32234.t1
chr8.3	exon	48188224	48188273	48188224	ID=MS.gene32234.t1.exon10;Parent=MS.gene32234.t1
chr8.3	CDS	48188224	48188273	48188224	ID=cds.MS.gene32234.t1;Parent=MS.gene32234.t1
chr8.3	exon	48188374	48188485	48188374	ID=MS.gene32234.t1.exon11;Parent=MS.gene32234.t1
chr8.3	CDS	48188374	48188485	48188374	ID=cds.MS.gene32234.t1;Parent=MS.gene32234.t1

Gene Sequence

>MS.gene32234

ATGGCGTATCCTCTCTCTTCTTCCTTCAACATTCCGATCACTCGCCACCACCCTTTCTTCCGCCACACAAAGTCACCTTCTCGAATATTCTGCTTCACAAAGAGCCAATTAGGCCAATGTGACGATGACACGTCAGTTGGTATAACTCTGAGGATAATGAAGCAATTGAAGAGTGTGATTCCAATCCTAATTGCTTCCACCGTTCAGTTCAGTTCCATGGTTCCTTACGTGTCTTCTCCCGCTGCGAATGCGATTCTGTATTCGCCGGACACAAAGGTTCCTAGAACTGGTGAAGTTGCTCTTAGGAGAGCTATCCCTGCAAGCCCTAACATGAAGGCCATACAGGTTGTGTTTTGTTCTATAATGCATATCTTATTTTGATTTATTTGTTATGTACAAGGCAATTAAATATTTTAATAAACTTATGTGGTGAAGGCTTGAGACCTAGGAGTGTGCTCCTCACAAGGTCTTAAGTTCGAATCCTCGAGGTTTCAATAATTCTTGTGTGGAGTCGGTCCATACTGGACGGTTGGAACATTGGTGTGAAGTTGGAAGGAAATTGAAAGGTTGGAAGATTAAAAACAAGTCACGAGACATATGGCTCTAATTAGACCTCCTGGTAGTAGATGGTGGGATTTGGTTCCCCGGATTAGTCAGTCTTGGGCCGGCTACCGGGTTTCCAAAAAGAAATGTAACCTATTTAGTTACTCCCTCTAATCTAAAAATTTTCAAGATCAAAGAAATGCATTGAAATAGTTAATTGTAAATTGGTAGTACAATTTTGAATTTATTCTAAAAATAGCCTTTGGTGTCTTTTCATATATTTCTTGGATAAGAAATGAGTGAGAATTCTTCTCACAATAAACAACGGTATACAAGGAATTGAATATTATTAATAATGTTGAAAATGATCAAATGGAGTAGTTTGTTATATATATATAAGAACCAAAATTTGCAATATTTTGATTCACATGAAGAGGACTGATAGGAGTAGTTAGTTTCTAACTGGTCTATACATAACTAACTATTTTTTTATAGAAACTAATAAGTTGTGTTACAATGATACTAATTCAGGAGACTCTTGAAGATATTTCGTATCTGCTGAGGATTCCACAGAGGAAACCTTATGGAACAATGGAGGGGAACGTAAAGAAAGTTTTGAAGGTAATCATAATTTTTTTCTTCTCGTGTATTTATAATAGTTTAATATCTGAAATCCCATGGTTAAGTATTTTAGATGCATTATAAGAAATACTGGAGGGAAATATAGAAGATGCAAACCATAGGATTCATGTGCAATATAGGAAAAAAAAATAACTCTCGAGTTTACAGGTAAATTTTAAAGCACTGTTGTAAGACCTACTATATGATAAAGTGGTAAAAAGAAAGTAAGATCCATGTTACAGAGATGCTCAGATGCAAACTTTATGATGGGTCATGGAATCCACAAGACAAAATAGGAATGAGAATGAAAGTATTAGAAAGAAAGTTGGGATAATACTTGTTGTATAGTAGATGAAAAATCACTGATTATTAGGTGTTATTTCCTTTCTAAGATTTTACAGACCCTCTGTTCAATTGAATTAATGAAACAGTTTCAATTATTTAAATTTTGTACATGTGCAAACTTTGTGATTTTTTGAGCTTCCATAACATCTTTTAAGCCTTTGGTGTGTCTTTTCGTTGATAGAAAGATATACGATTGCAACTAAAATACTTTAAACTTCACAATTTACATGTAAAACTTAAGTCTTGACGCGTCGTATTCATACAAGGACTTCAATATTTTGATCAGTTTCTTCCTTATTTTAGATAGCGGTAGATGAAAAGGATTCTATATTGGCAAGTATACCAGCGGAACTGAAGGAAAAGGCCTCTTTGGTGCATTCAACTTTAATAGATGGGAAGGTATTTTAGAAAAAATGAACCTCGATTATTTGATTAATTGTATATCAAGTGCTGACACCTTCTTTCTAACAGAAAAAATATTCACGTTTCAACATAATTGGATATGTTTATGATGATTTCGGTCAATTTAACTCAGGGCTATACATGCATTGATAGTTCTCGTACAATATAGCGATATTTTTCTATTGTTTACTTTTCCTATATATAGCCGATATACCTTGTGCTTATATCACACAGGTTGCTGATTCTTGAAAAAGGATTCAGATGAAGAAACTTGAGTGTGAAACTTAGTTATTTTCACTTTATTTCAGATCATTGTGTTACTTTTTTTGTTGTAGGATGAAATCTTTGACAATGTTTGTTATATAATTCTCACATGGTAGTTATGGTCCATTATAGAAGCTATCAGAATGATATCAGCATTTTGCAGGGGGGTTTGCAAGTTCTCCTTCAATCCATAAAGGAACAGGATGCAGATAAAGTATCTGTGAACCTTCAATCTACACTGGATATTGTAGCAGAACTAGAGACATTACAGGTGATGGAAACCAAATAATATGATGCTATCTTGAAATCAAGAGTCAATTTTGTTTTCCAATTAAAATGACTGAATCAATGTAACACTTATATTATGGACATGTACTTAATCTGATCTTGATATTGCGGCAACAGGCACCTGGTCTATCTTTTCTGTTGCCGGGGCAATACACGGAATATCCACGGTCAGTGACTCCTTCAAAATGACATGTCAGTTTACTACATTGATGTAGTTTAAACATCCCTCTAATGTATATTTTGACGTATTTCACATGTATCCATCATTTGACATGAGACTAGTATAAAAAATCATTGTATCTTTAATCATTCTTAGTGCAATTCCTTGGACAAATTCAATAGTCAGAAGAAGGGAGAAAAATCAACATCTTCATAATTTTTTTGTAGGCTTTCAGGGAGAGGAACTGTTGAGTTTATCATTGAGAAAGGAGACGGTTCAACATTTTCTCCAGTTGGTGGAGAAGAGAGAAAAACTGCCACCATTCAGGTAAAATTCAATCCATAACTTGTCCTTTATGATTATCCATTGGTTGTTGATTTGATCGACCTACTCTTAAACAATCCATAAACATTAAGAAAAGGTCCATTTTAAGGAACACTCAAAATAAGTATTAACAATTTTCATAAATGCATTGACGGTTGTAAATGACTTGAAAATGACGAACACAATATTTATTTTGAGATAAGCTTGGAATAAATTAATTAATGTTACATTGAAATAGTAAAACGCATTTTGAACAAAATTTCTTTGCTAAAACTTATTTTGGAATGGATGGAGTATAACATAAATACATAACTGCAAATATGTAGTTGGCTGAAATACTGAATTATGCATTGAAAGTTTACTGTTGGTAGACGGTATATTGAAACTAACTGACAGTTAATTTCTTGCCAGGTTGTTTTAGATGGATATTCAGCTCCTTTAACTGCAGGGAATTTTGCAAAACTGGTAAGGTAGTGCAACTGTGCTTCAGCTTTGTGAATTCAGTTTGTCTATTATTTGCCAATATCCAGTGTATATCGCTCTTCATTTTCATCGCTTATCATGGTTTATCCATATTCGGTCTGATTTACCAGTTCTCTGAGTGAACTAAATCAGTGATGTTCATTTTTTTACTTGAATGGTTTATTATCTATTTCTAATGCCTGAATCCATTACTGACTTCCTATTAATCATGAACTTTTTATGTATCATCGCAAACATTTCAGTCAACTAGGTTTATTTTTTTTCAATTAAAAATTACTTGTTTTGCTTTTGGGATGATAGTTTGAATAGAGAATAAAGAATGGCTTCCACATTCTTAAACTTATGTTCAGGATCTTGTGTATGCAGCGTGATAAAATTTTTGTATAAGGAGAATATAGTAACTGGAATACCTATATTTTCTACTTGAAATTTAATGTAAAGTTGATTTTAATGATTAACGAGGAAGAGTCAACTTTTAAACGAAACCTTGGAAACAACTATGGCAATATACAACTTTGAGGAATGGTTTAATGTGAAACTAATATAAGGGATGAGAGCAATAAGGAAGTATGGTTTTCAGCTGTGGAAGACTGGAAATTATGTGTTGCAAATTGGAATATTTTGTTTCTTCGTCAGAATATCTATTTTTGAATGTGCATATATTGCTGTATAATGTGGTATTTTTCATGTTTCTAGATTTTGTTTTAAGCATCTAGATAATTTGATTTTACCATCATCTACTGAAACAACGCTGTTAAATTTGGGTTAGGCTGAACCCTACAAAATCAGTTTGTAATGCGAGAGATGCTTTCCACTTACAAATACATTTTTAAGGCATATCTATCTAATGTGGTCTCTCAACACACTCAGTCACATATCCTTTAGGTGATGGATGGAGCATATAATGGCATAAAACTCAACTGTTCCAATCAAGCTATTCTCTCGGAAACCGGACTAGATAAGACAAGTGGTTACAATGTTCCCTTGGAAATAATGCCCGCTGGACAATTTGAGCCCCTTTATAAAACAACATTAAGTGTACAGGTATGTTTTCGTTTCAGTTTATCACATTTTTTGCAGCACACTTGACAGAGTAATAATCATGTTCTCATTTATTTTCTTATCTGTCTTTTGGAAGGATGGAGAACTGCCAGTTCTGCCTCTATCTGTTTATGGAGCAGTTGCTATGGCTCATAACGAAGCTTCTGAGGAGTATTCATCACCTTATCAATTTTTCTTCTATCTCTATGATAAAAGAAATGTAAGGGCAAGCCACCTATTTCCCCGCTAAATGCCTTATATTTGTTTTCTTAAAATTTTGTTATGCAAAATAAGAGTGAAAGGTGGACGCAGAATTTGAATGAGTGATGTTTCATGTTTTTAAAAACTAGAATGGGTCCTTTGTTTTTTCTTTTCAATTGTTGAAGCCTAATTAGTAATCTTTTTTTATTCTTTTCCTCTGTTGTAGGCCGGCTTAGGAGGGATATCATTTGAGGAAGGGCAATTTTCAGTTTTTGGGTAAGTTATGTTACTATTCATATAATCTTCTGAACCATTTTGGAGTTTAACTTTTTTCTCTTTTCTCTTTTTTGTTTTTATTTTGGGGTGCTATGTGCAGATATACCACCATAGGGAGAGATATTCTCCCCGAGATAAAAACCGGGGATATCATTCGTTCCGCAAAGCTTATTGAAGGCCAAGACCGCCTTGTGTTGCCGAAGGAAAGTTGA

Protein sequence

>MS.gene32234.t1

MAYPLSSSFNIPITRHHPFFRHTKSPSRIFCFTKSQLGQCDDDTSVGITLRIMKQLKSVIPILIASTVQFSSMVPYVSSPAANAILYSPDTKVPRTGEVALRRAIPASPNMKAIQETLEDISYLLRIPQRKPYGTMEGNVKKVLKIAVDEKDSILASIPAELKEKASLVHSTLIDGKGGLQVLLQSIKEQDADKVSVNLQSTLDIVAELETLQAPGLSFLLPGQYTEYPRLSGRGTVEFIIEKGDGSTFSPVGGEERKTATIQVVLDGYSAPLTAGNFAKLVMDGAYNGIKLNCSNQAILSETGLDKTSGYNVPLEIMPAGQFEPLYKTTLSVQDGELPVLPLSVYGAVAMAHNEASEEYSSPYQFFFYLYDKRNAGLGGISFEEGQFSVFGYTTIGRDILPEIKTGDIIRSAKLIEGQDRLVLPKES