Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40534.t1 | XP_003610630.1 | 86 | 143 | 10 | 1 | 1 | 133 | 1 | 143 | 3.30E-56 | 227.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40534.t1 | Q05024 | 40.3 | 72 | 41 | 1 | 62 | 133 | 126 | 195 | 1.5e-09 | 63.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40534.t1 | G7K0Y0 | 86.0 | 143 | 10 | 1 | 1 | 133 | 1 | 143 | 2.4e-56 | 227.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene40534.t1 | TR | SWI/SNF-BAF60b |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene40534 | 0.856878 | 2.39E-62 | -1.69E-46 |
| MS.gene049171 | MS.gene40534 | 0.872155 | 3.95E-67 | -1.69E-46 |
| MS.gene049173 | MS.gene40534 | 0.824757 | 6.79E-54 | -1.69E-46 |
| MS.gene049217 | MS.gene40534 | 0.87158 | 6.13E-67 | -1.69E-46 |
| MS.gene049222 | MS.gene40534 | 0.853155 | 2.88E-61 | -1.69E-46 |
| MS.gene049285 | MS.gene40534 | 0.871888 | 4.85E-67 | -1.69E-46 |
| MS.gene049320 | MS.gene40534 | 0.848956 | 4.40E-60 | -1.69E-46 |
| MS.gene049425 | MS.gene40534 | -0.806705 | 7.23E-50 | -1.69E-46 |
| MS.gene049427 | MS.gene40534 | 0.852354 | 4.88E-61 | -1.69E-46 |
| MS.gene049609 | MS.gene40534 | 0.838941 | 2.13E-57 | -1.69E-46 |
| MS.gene049614 | MS.gene40534 | 0.831313 | 1.79E-55 | -1.69E-46 |
| MS.gene049627 | MS.gene40534 | 0.823132 | 1.63E-53 | -1.69E-46 |
| MS.gene049760 | MS.gene40534 | 0.824231 | 9.03E-54 | -1.69E-46 |
| MS.gene049805 | MS.gene40534 | 0.846232 | 2.47E-59 | -1.69E-46 |
| MS.gene050076 | MS.gene40534 | 0.802335 | 5.89E-49 | -1.69E-46 |
| MS.gene050163 | MS.gene40534 | 0.887926 | 9.29E-73 | -1.69E-46 |
| MS.gene050165 | MS.gene40534 | 0.870175 | 1.78E-66 | -1.69E-46 |
| MS.gene050333 | MS.gene40534 | 0.857524 | 1.54E-62 | -1.69E-46 |
| MS.gene050353 | MS.gene40534 | -0.806734 | 7.12E-50 | -1.69E-46 |
| MS.gene050444 | MS.gene40534 | 0.814121 | 1.81E-51 | -1.69E-46 |
| MS.gene050475 | MS.gene40534 | -0.837822 | 4.14E-57 | -1.69E-46 |
| MS.gene050504 | MS.gene40534 | 0.845342 | 4.31E-59 | -1.69E-46 |
| MS.gene050518 | MS.gene40534 | 0.84336 | 1.47E-58 | -1.69E-46 |
| MS.gene050538 | MS.gene40534 | 0.824463 | 7.96E-54 | -1.69E-46 |
| MS.gene050541 | MS.gene40534 | -0.835397 | 1.72E-56 | -1.69E-46 |
| MS.gene050577 | MS.gene40534 | 0.802501 | 5.45E-49 | -1.69E-46 |
| MS.gene050593 | MS.gene40534 | 0.822922 | 1.83E-53 | -1.69E-46 |
| MS.gene050612 | MS.gene40534 | 0.844366 | 7.90E-59 | -1.69E-46 |
| MS.gene050675 | MS.gene40534 | 0.820237 | 7.63E-53 | -1.69E-46 |
| MS.gene050699 | MS.gene40534 | 0.845976 | 2.90E-59 | -1.69E-46 |
| MS.gene050747 | MS.gene40534 | 0.843694 | 1.20E-58 | -1.69E-46 |
| MS.gene050767 | MS.gene40534 | 0.854779 | 9.80E-62 | -1.69E-46 |
| MS.gene050770 | MS.gene40534 | 0.859313 | 4.51E-63 | -1.69E-46 |
| MS.gene050772 | MS.gene40534 | 0.852701 | 3.88E-61 | -1.69E-46 |
| MS.gene050781 | MS.gene40534 | 0.80888 | 2.49E-50 | -1.69E-46 |
| MS.gene05080 | MS.gene40534 | 0.817554 | 3.11E-52 | -1.69E-46 |
| MS.gene050950 | MS.gene40534 | 0.837997 | 3.73E-57 | -1.69E-46 |
| MS.gene050986 | MS.gene40534 | 0.811652 | 6.29E-51 | -1.69E-46 |
| MS.gene05100 | MS.gene40534 | 0.871887 | 4.85E-67 | -1.69E-46 |
| MS.gene05101 | MS.gene40534 | 0.809121 | 2.21E-50 | -1.69E-46 |
| MS.gene051228 | MS.gene40534 | 0.843347 | 1.48E-58 | -1.69E-46 |
| MS.gene051387 | MS.gene40534 | 0.811217 | 7.82E-51 | -1.69E-46 |
| MS.gene051551 | MS.gene40534 | 0.805293 | 1.43E-49 | -1.69E-46 |
| MS.gene051666 | MS.gene40534 | 0.875898 | 2.14E-68 | -1.69E-46 |
| MS.gene051694 | MS.gene40534 | 0.863749 | 1.99E-64 | -1.69E-46 |
| MS.gene051810 | MS.gene40534 | 0.851316 | 9.61E-61 | -1.69E-46 |
| MS.gene051858 | MS.gene40534 | 0.847625 | 1.03E-59 | -1.69E-46 |
| MS.gene051949 | MS.gene40534 | 0.824885 | 6.33E-54 | -1.69E-46 |
| MS.gene052078 | MS.gene40534 | 0.808006 | 3.83E-50 | -1.69E-46 |
| MS.gene052271 | MS.gene40534 | 0.859903 | 3.00E-63 | -1.69E-46 |
| MS.gene052290 | MS.gene40534 | 0.847342 | 1.23E-59 | -1.69E-46 |
| MS.gene052322 | MS.gene40534 | 0.838792 | 2.33E-57 | -1.69E-46 |
| MS.gene052379 | MS.gene40534 | 0.865762 | 4.67E-65 | -1.69E-46 |
| MS.gene052481 | MS.gene40534 | 0.802905 | 4.49E-49 | -1.69E-46 |
| MS.gene052484 | MS.gene40534 | 0.816903 | 4.35E-52 | -1.69E-46 |
| MS.gene052615 | MS.gene40534 | 0.827904 | 1.21E-54 | -1.69E-46 |
| MS.gene052670 | MS.gene40534 | 0.809363 | 1.96E-50 | -1.69E-46 |
| MS.gene052870 | MS.gene40534 | 0.815586 | 8.57E-52 | -1.69E-46 |
| MS.gene052872 | MS.gene40534 | 0.815367 | 9.59E-52 | -1.69E-46 |
| MS.gene053009 | MS.gene40534 | 0.904021 | 1.90E-79 | -1.69E-46 |
| MS.gene053103 | MS.gene40534 | 0.822844 | 1.91E-53 | -1.69E-46 |
| MS.gene053104 | MS.gene40534 | 0.830099 | 3.55E-55 | -1.69E-46 |
| MS.gene053107 | MS.gene40534 | 0.846115 | 2.66E-59 | -1.69E-46 |
| MS.gene053203 | MS.gene40534 | 0.815738 | 7.93E-52 | -1.69E-46 |
| MS.gene053207 | MS.gene40534 | 0.859063 | 5.36E-63 | -1.69E-46 |
| MS.gene053213 | MS.gene40534 | 0.852143 | 5.60E-61 | -1.69E-46 |
| MS.gene053284 | MS.gene40534 | 0.813471 | 2.52E-51 | -1.69E-46 |
| MS.gene053285 | MS.gene40534 | 0.818832 | 1.60E-52 | -1.69E-46 |
| MS.gene053286 | MS.gene40534 | 0.842842 | 2.02E-58 | -1.69E-46 |
| MS.gene053322 | MS.gene40534 | 0.895436 | 9.60E-76 | -1.69E-46 |
| MS.gene053574 | MS.gene40534 | 0.806723 | 7.16E-50 | -1.69E-46 |
| MS.gene053632 | MS.gene40534 | 0.86936 | 3.28E-66 | -1.69E-46 |
| MS.gene053915 | MS.gene40534 | 0.804372 | 2.23E-49 | -1.69E-46 |
| MS.gene053916 | MS.gene40534 | 0.803613 | 3.21E-49 | -1.69E-46 |
| MS.gene054376 | MS.gene40534 | 0.84082 | 6.91E-58 | -1.69E-46 |
| MS.gene054408 | MS.gene40534 | 0.817152 | 3.82E-52 | -1.69E-46 |
| MS.gene054595 | MS.gene40534 | 0.803265 | 3.79E-49 | -1.69E-46 |
| MS.gene054600 | MS.gene40534 | 0.849884 | 2.43E-60 | -1.69E-46 |
| MS.gene054642 | MS.gene40534 | 0.880777 | 4.15E-70 | -1.69E-46 |
| MS.gene05470 | MS.gene40534 | 0.800149 | 1.65E-48 | -1.69E-46 |
| MS.gene054802 | MS.gene40534 | 0.860021 | 2.76E-63 | -1.69E-46 |
| MS.gene054803 | MS.gene40534 | 0.85582 | 4.88E-62 | -1.69E-46 |
| MS.gene054804 | MS.gene40534 | 0.861676 | 8.68E-64 | -1.69E-46 |
| MS.gene054927 | MS.gene40534 | 0.810129 | 1.34E-50 | -1.69E-46 |
| MS.gene054954 | MS.gene40534 | 0.830324 | 3.13E-55 | -1.69E-46 |
| MS.gene055206 | MS.gene40534 | 0.841263 | 5.28E-58 | -1.69E-46 |
| MS.gene055254 | MS.gene40534 | 0.839694 | 1.36E-57 | -1.69E-46 |
| MS.gene055289 | MS.gene40534 | 0.806023 | 1.01E-49 | -1.69E-46 |
| MS.gene055362 | MS.gene40534 | 0.853963 | 1.69E-61 | -1.69E-46 |
| MS.gene055397 | MS.gene40534 | 0.865174 | 7.15E-65 | -1.69E-46 |
| MS.gene055412 | MS.gene40534 | 0.824864 | 6.41E-54 | -1.69E-46 |
| MS.gene055499 | MS.gene40534 | 0.87858 | 2.50E-69 | -1.69E-46 |
| MS.gene055502 | MS.gene40534 | 0.848068 | 7.75E-60 | -1.69E-46 |
| MS.gene055577 | MS.gene40534 | 0.844607 | 6.81E-59 | -1.69E-46 |
| MS.gene055636 | MS.gene40534 | 0.818471 | 1.93E-52 | -1.69E-46 |
| MS.gene055638 | MS.gene40534 | 0.816563 | 5.19E-52 | -1.69E-46 |
| MS.gene055647 | MS.gene40534 | 0.84417 | 8.92E-59 | -1.69E-46 |
| MS.gene055722 | MS.gene40534 | 0.819783 | 9.69E-53 | -1.69E-46 |
| MS.gene055748 | MS.gene40534 | 0.816262 | 6.06E-52 | -1.69E-46 |
| MS.gene05592 | MS.gene40534 | 0.8508 | 1.34E-60 | -1.69E-46 |
| MS.gene055941 | MS.gene40534 | 0.820072 | 8.32E-53 | -1.69E-46 |
| MS.gene055956 | MS.gene40534 | -0.818307 | 2.10E-52 | -1.69E-46 |
| MS.gene056083 | MS.gene40534 | 0.875067 | 4.13E-68 | -1.69E-46 |
| MS.gene056374 | MS.gene40534 | 0.855271 | 7.06E-62 | -1.69E-46 |
| MS.gene056510 | MS.gene40534 | 0.805387 | 1.37E-49 | -1.69E-46 |
| MS.gene056550 | MS.gene40534 | -0.800986 | 1.11E-48 | -1.69E-46 |
| MS.gene056610 | MS.gene40534 | 0.811423 | 7.05E-51 | -1.69E-46 |
| MS.gene056657 | MS.gene40534 | 0.844548 | 7.06E-59 | -1.69E-46 |
| MS.gene056692 | MS.gene40534 | 0.821753 | 3.41E-53 | -1.69E-46 |
| MS.gene056796 | MS.gene40534 | 0.813778 | 2.15E-51 | -1.69E-46 |
| MS.gene056897 | MS.gene40534 | 0.816417 | 5.59E-52 | -1.69E-46 |
| MS.gene057011 | MS.gene40534 | 0.848549 | 5.71E-60 | -1.69E-46 |
| MS.gene057123 | MS.gene40534 | 0.804862 | 1.76E-49 | -1.69E-46 |
| MS.gene057129 | MS.gene40534 | 0.905552 | 3.81E-80 | -1.69E-46 |
| MS.gene057146 | MS.gene40534 | 0.829171 | 5.98E-55 | -1.69E-46 |
| MS.gene057196 | MS.gene40534 | 0.804181 | 2.44E-49 | -1.69E-46 |
| MS.gene057246 | MS.gene40534 | 0.826137 | 3.20E-54 | -1.69E-46 |
| MS.gene057295 | MS.gene40534 | 0.823598 | 1.27E-53 | -1.69E-46 |
| MS.gene057331 | MS.gene40534 | 0.832277 | 1.04E-55 | -1.69E-46 |
| MS.gene057416 | MS.gene40534 | 0.887034 | 2.03E-72 | -1.69E-46 |
| MS.gene057658 | MS.gene40534 | 0.823686 | 1.21E-53 | -1.69E-46 |
| MS.gene057831 | MS.gene40534 | 0.835951 | 1.24E-56 | -1.69E-46 |
| MS.gene058019 | MS.gene40534 | 0.817276 | 3.59E-52 | -1.69E-46 |
| MS.gene058233 | MS.gene40534 | 0.803315 | 3.70E-49 | -1.69E-46 |
| MS.gene058293 | MS.gene40534 | 0.817801 | 2.73E-52 | -1.69E-46 |
| MS.gene058323 | MS.gene40534 | 0.83606 | 1.17E-56 | -1.69E-46 |
| MS.gene05837 | MS.gene40534 | 0.81122 | 7.81E-51 | -1.69E-46 |
| MS.gene058419 | MS.gene40534 | 0.869893 | 2.20E-66 | -1.69E-46 |
| MS.gene058544 | MS.gene40534 | 0.886849 | 2.39E-72 | -1.69E-46 |
| MS.gene058660 | MS.gene40534 | 0.823808 | 1.13E-53 | -1.69E-46 |
| MS.gene058723 | MS.gene40534 | 0.850106 | 2.10E-60 | -1.69E-46 |
| MS.gene058773 | MS.gene40534 | 0.876345 | 1.50E-68 | -1.69E-46 |
| MS.gene058838 | MS.gene40534 | 0.821335 | 4.27E-53 | -1.69E-46 |
| MS.gene05883 | MS.gene40534 | 0.839524 | 1.51E-57 | -1.69E-46 |
| MS.gene059022 | MS.gene40534 | 0.859334 | 4.45E-63 | -1.69E-46 |
| MS.gene059023 | MS.gene40534 | 0.850731 | 1.40E-60 | -1.69E-46 |
| MS.gene059029 | MS.gene40534 | 0.858475 | 8.03E-63 | -1.69E-46 |
| MS.gene059102 | MS.gene40534 | -0.810854 | 9.37E-51 | -1.69E-46 |
| MS.gene05914 | MS.gene40534 | 0.803076 | 4.14E-49 | -1.69E-46 |
| MS.gene059326 | MS.gene40534 | 0.810717 | 1.00E-50 | -1.69E-46 |
| MS.gene05934 | MS.gene40534 | 0.838195 | 3.32E-57 | -1.69E-46 |
| MS.gene059536 | MS.gene40534 | 0.874966 | 4.46E-68 | -1.69E-46 |
| MS.gene059677 | MS.gene40534 | 0.878491 | 2.69E-69 | -1.69E-46 |
| MS.gene059718 | MS.gene40534 | 0.857423 | 1.65E-62 | -1.69E-46 |
| MS.gene059756 | MS.gene40534 | 0.830386 | 3.02E-55 | -1.69E-46 |
| MS.gene059858 | MS.gene40534 | 0.805749 | 1.15E-49 | -1.69E-46 |
| MS.gene059902 | MS.gene40534 | 0.852433 | 4.63E-61 | -1.69E-46 |
| MS.gene059960 | MS.gene40534 | 0.888782 | 4.35E-73 | -1.69E-46 |
| MS.gene060336 | MS.gene40534 | -0.81367 | 2.28E-51 | -1.69E-46 |
| MS.gene060675 | MS.gene40534 | 0.820786 | 5.71E-53 | -1.69E-46 |
| MS.gene060728 | MS.gene40534 | 0.807534 | 4.82E-50 | -1.69E-46 |
| MS.gene060762 | MS.gene40534 | 0.83359 | 4.89E-56 | -1.69E-46 |
| MS.gene06077 | MS.gene40534 | 0.811443 | 6.98E-51 | -1.69E-46 |
| MS.gene060804 | MS.gene40534 | 0.802619 | 5.15E-49 | -1.69E-46 |
| MS.gene060818 | MS.gene40534 | 0.816475 | 5.42E-52 | -1.69E-46 |
| MS.gene06092 | MS.gene40534 | 0.896571 | 3.25E-76 | -1.69E-46 |
| MS.gene061150 | MS.gene40534 | 0.913417 | 6.30E-84 | -1.69E-46 |
| MS.gene061171 | MS.gene40534 | 0.80708 | 6.02E-50 | -1.69E-46 |
| MS.gene061200 | MS.gene40534 | 0.887952 | 9.07E-73 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40534.t1 | MTR_5g005200 | 88.811 | 143 | 6 | 1 | 1 | 133 | 1 | 143 | 4.24e-78 | 227 |
| MS.gene40534.t1 | MTR_5g025500 | 42.105 | 95 | 55 | 0 | 38 | 132 | 37 | 131 | 1.58e-24 | 91.7 |
| MS.gene40534.t1 | MTR_3g053350 | 51.327 | 113 | 11 | 5 | 21 | 129 | 29 | 101 | 1.16e-18 | 81.3 |
| MS.gene40534.t1 | MTR_3g055330 | 41.111 | 90 | 51 | 2 | 44 | 132 | 147 | 235 | 1.33e-15 | 71.6 |
| MS.gene40534.t1 | MTR_3g055330 | 41.111 | 90 | 51 | 2 | 44 | 132 | 147 | 235 | 2.04e-15 | 71.2 |
| MS.gene40534.t1 | MTR_5g018010 | 40.580 | 69 | 40 | 1 | 62 | 130 | 61 | 128 | 4.10e-15 | 69.7 |
| MS.gene40534.t1 | MTR_5g018010 | 37.805 | 82 | 50 | 1 | 51 | 132 | 183 | 263 | 2.13e-14 | 67.8 |
| MS.gene40534.t1 | MTR_5g018010 | 40.580 | 69 | 40 | 1 | 62 | 130 | 138 | 205 | 1.18e-14 | 69.3 |
| MS.gene40534.t1 | MTR_5g018010 | 37.805 | 82 | 50 | 1 | 51 | 132 | 260 | 340 | 5.25e-14 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40534.t1 | AT2G14880 | 55.944 | 143 | 50 | 6 | 1 | 132 | 1 | 141 | 4.37e-42 | 136 |
| MS.gene40534.t1 | AT4G34290 | 56.034 | 116 | 39 | 2 | 29 | 132 | 29 | 144 | 1.03e-34 | 117 |
| MS.gene40534.t1 | AT3G03590 | 52.564 | 78 | 37 | 0 | 55 | 132 | 63 | 140 | 2.18e-25 | 94.0 |
| MS.gene40534.t1 | AT1G31760 | 40.594 | 101 | 59 | 1 | 32 | 131 | 8 | 108 | 6.58e-25 | 92.0 |
| MS.gene40534.t1 | AT2G35605 | 47.253 | 91 | 48 | 0 | 41 | 131 | 15 | 105 | 1.22e-24 | 91.3 |
| MS.gene40534.t1 | AT2G14880 | 56.471 | 85 | 32 | 4 | 13 | 94 | 21 | 103 | 3.94e-21 | 82.0 |
| MS.gene40534.t1 | AT2G14880 | 56.471 | 85 | 32 | 4 | 13 | 94 | 21 | 103 | 3.94e-21 | 82.0 |
| MS.gene40534.t1 | AT4G26810 | 34.000 | 100 | 61 | 2 | 32 | 131 | 1 | 95 | 1.57e-15 | 67.8 |
| MS.gene40534.t1 | AT4G26810 | 34.000 | 100 | 61 | 2 | 32 | 131 | 1 | 95 | 1.57e-15 | 67.8 |
| MS.gene40534.t1 | AT4G22360 | 37.624 | 101 | 54 | 3 | 40 | 132 | 173 | 272 | 1.90e-15 | 71.6 |
| MS.gene40534.t1 | AT1G49520 | 37.209 | 86 | 50 | 2 | 45 | 130 | 243 | 324 | 1.87e-13 | 66.2 |
| MS.gene40534.t1 | AT1G49520 | 32.895 | 76 | 50 | 1 | 55 | 130 | 101 | 175 | 1.99e-11 | 60.5 |
| MS.gene40534.t1 | AT3G48600 | 33.019 | 106 | 67 | 2 | 32 | 133 | 8 | 113 | 6.20e-13 | 62.8 |
| MS.gene40534.t1 | AT3G19080 | 35.165 | 91 | 56 | 2 | 40 | 130 | 250 | 337 | 8.30e-13 | 64.3 |
| MS.gene40534.t1 | AT3G19080 | 34.211 | 76 | 49 | 1 | 55 | 130 | 115 | 189 | 1.26e-11 | 60.8 |
| MS.gene40534.t1 | AT3G48600 | 33.019 | 106 | 67 | 2 | 32 | 133 | 8 | 113 | 1.41e-12 | 62.8 |
| MS.gene40534.t1 | AT3G19080 | 34.783 | 92 | 57 | 2 | 40 | 131 | 250 | 338 | 1.52e-12 | 63.5 |
| MS.gene40534.t1 | AT3G19080 | 33.766 | 77 | 50 | 1 | 55 | 131 | 115 | 190 | 1.93e-11 | 60.5 |
| MS.gene40534.t1 | AT3G19080 | 34.783 | 92 | 57 | 2 | 40 | 131 | 250 | 338 | 1.52e-12 | 63.5 |
| MS.gene40534.t1 | AT3G19080 | 33.766 | 77 | 50 | 1 | 55 | 131 | 115 | 190 | 1.93e-11 | 60.5 |
| MS.gene40534.t1 | AT3G19080 | 34.783 | 92 | 57 | 2 | 40 | 131 | 250 | 338 | 1.56e-12 | 63.5 |
| MS.gene40534.t1 | AT3G19080 | 33.766 | 77 | 50 | 1 | 55 | 131 | 115 | 190 | 2.03e-11 | 60.5 |
Find 48 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCAAATGCTCTTGAGGGCT+TGG | 0.201712 | 5.2:-381593 | None:intergenic |
| GTGGCCTTTGCCTTCAATTA+AGG | 0.272510 | 5.2:-382583 | None:intergenic |
| GCTCTTGAGGGCTTGGGTTC+GGG | 0.285856 | 5.2:-381586 | None:intergenic |
| TGCTCTTGAGGGCTTGGGTT+CGG | 0.309630 | 5.2:-381587 | None:intergenic |
| CCCAAGCCCTCAAGAGCATT+TGG | 0.313567 | 5.2:+381592 | MS.gene40534:CDS |
| GAGCATTTGGGCCCACATTA+AGG | 0.313899 | 5.2:+381605 | MS.gene40534:CDS |
| CTTGGAGTCCTGAGAGTTAG+AGG | 0.343205 | 5.2:-381402 | None:intergenic |
| CCAAATGCTCTTGAGGGCTT+GGG | 0.352861 | 5.2:-381592 | None:intergenic |
| GGCTTGGGTTCGGGAAATCT+CGG | 0.358689 | 5.2:-381577 | None:intergenic |
| GTTGATATGCTTGAGATTGC+TGG | 0.364505 | 5.2:+382542 | MS.gene40534:CDS |
| GCCCTCACTTCCTTAATTGA+AGG | 0.384410 | 5.2:+382573 | MS.gene40534:CDS |
| CCGACGAGGTCTTGCATCTC+GGG | 0.390790 | 5.2:-381549 | None:intergenic |
| GCCGACGAGGTCTTGCATCT+CGG | 0.410466 | 5.2:-381550 | None:intergenic |
| AAACTGAAGAAGGTATTTGC+AGG | 0.431242 | 5.2:+382509 | MS.gene40534:CDS |
| CCAAGCCCTCAAGAGCATTT+GGG | 0.438538 | 5.2:+381593 | MS.gene40534:CDS |
| GCTTGGGTTCGGGAAATCTC+GGG | 0.463473 | 5.2:-381576 | None:intergenic |
| TCCCACACCTTCGTTGCGTA+TGG | 0.464306 | 5.2:+381434 | MS.gene40534:CDS |
| CATCTCCTCCTCTAACTCTC+AGG | 0.478833 | 5.2:+381394 | MS.gene40534:CDS |
| CATTAAGGAACACAATCTTC+AGG | 0.486338 | 5.2:+381620 | MS.gene40534:CDS |
| GTCTCTCAGCCTCCACCCAC+CGG | 0.498374 | 5.2:+381486 | MS.gene40534:CDS |
| GCCTTCAATTAAGGAAGTGA+GGG | 0.502350 | 5.2:-382574 | None:intergenic |
| GTGGGCCCAAATGCTCTTGA+GGG | 0.503891 | 5.2:-381598 | None:intergenic |
| CTCTAACTCTCAGGACTCCA+AGG | 0.525205 | 5.2:+381403 | MS.gene40534:CDS |
| TGTGGGCCCAAATGCTCTTG+AGG | 0.532300 | 5.2:-381599 | None:intergenic |
| GAAGATTGTGTTCCTTAATG+TGG | 0.537334 | 5.2:-381617 | None:intergenic |
| AGTGAAGATGGCGGTTTCAA+TGG | 0.537531 | 5.2:+381353 | None:intergenic |
| AGGAGATGATAATAATAGTC+CGG | 0.546560 | 5.2:-381379 | None:intergenic |
| GGTGGGTGGAGGCTGAGAGA+CGG | 0.548280 | 5.2:-381484 | None:intergenic |
| CGGTGGCAGAAGTAACTGTT+CGG | 0.553786 | 5.2:-381464 | None:intergenic |
| TGCCTTCAATTAAGGAAGTG+AGG | 0.555494 | 5.2:-382575 | None:intergenic |
| AAGATTGTGTTCCTTAATGT+GGG | 0.565657 | 5.2:-381616 | None:intergenic |
| AGCCATACGCAACGAAGGTG+TGG | 0.571765 | 5.2:-381436 | None:intergenic |
| GCCATACGCAACGAAGGTGT+GGG | 0.575259 | 5.2:-381435 | None:intergenic |
| CTGTGATGAGAAACTGAAGA+AGG | 0.578111 | 5.2:+382499 | MS.gene40534:CDS |
| ATGGCGGTTTCAATGGCTAC+CGG | 0.582248 | 5.2:+381360 | MS.gene40534:CDS |
| GGGTGGAGGCTGAGAGACGG+TGG | 0.583952 | 5.2:-381481 | None:intergenic |
| GGTGTGGGAAACGCAAACCT+TGG | 0.584167 | 5.2:-381420 | None:intergenic |
| AACTGAAGAAGGTATTTGCA+GGG | 0.589332 | 5.2:+382510 | MS.gene40534:CDS |
| CCCACCGGAGGCAAAATTCG+CGG | 0.592965 | 5.2:+381501 | MS.gene40534:CDS |
| AAATCTCGGGTTGGCCGACG+AGG | 0.609292 | 5.2:-381563 | None:intergenic |
| GGGTTCGGGAAATCTCGGGT+TGG | 0.610231 | 5.2:-381572 | None:intergenic |
| TCTCAGCCTCCACCCACCGG+AGG | 0.623094 | 5.2:+381489 | MS.gene40534:CDS |
| CGACGAGGTCTTGCATCTCG+GGG | 0.623606 | 5.2:-381548 | None:intergenic |
| CCCGAGATGCAAGACCTCGT+CGG | 0.633591 | 5.2:+381549 | MS.gene40534:CDS |
| GGAGTCCTGAGAGTTAGAGG+AGG | 0.667796 | 5.2:-381399 | None:intergenic |
| AGTGGAGCCATACGCAACGA+AGG | 0.673850 | 5.2:-381441 | None:intergenic |
| GACGAGGTCTTGCATCTCGG+GGG | 0.684378 | 5.2:-381547 | None:intergenic |
| GCAGAAGTAACTGTTCGGAG+TGG | 0.693933 | 5.2:-381459 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATATGAATGAATATATT+AGG | + | chr5.2:381891-381910 | MS.gene40534:intron | 15.0% |
| !!! | TCAAAAACAAATAATTTGTA+CGG | - | chr5.2:381709-381728 | None:intergenic | 15.0% |
| !!! | TTATTTTTAACCAACTAAAT+GGG | + | chr5.2:381996-382015 | MS.gene40534:intron | 15.0% |
| !!! | TTTAGGTGAAATTTTAAAAA+AGG | - | chr5.2:381686-381705 | None:intergenic | 15.0% |
| !!! | TTTATTTTTAACCAACTAAA+TGG | + | chr5.2:381995-382014 | MS.gene40534:intron | 15.0% |
| !! | AAAAGAATGAAAACTAGATT+TGG | - | chr5.2:381978-381997 | None:intergenic | 20.0% |
| !! | AACATGTAGTTAAGATTATA+TGG | - | chr5.2:382233-382252 | None:intergenic | 20.0% |
| !! | AATATATTAGGCACTAATTT+GGG | + | chr5.2:381903-381922 | MS.gene40534:intron | 20.0% |
| !! | CAAAATAAAACATGAACAAA+TGG | - | chr5.2:381842-381861 | None:intergenic | 20.0% |
| !! | TAAGTTGTTAGTTATTAAGA+TGG | + | chr5.2:381761-381780 | MS.gene40534:intron | 20.0% |
| !!! | TATGCAATTCTGTTTTATAA+TGG | + | chr5.2:382173-382192 | MS.gene40534:intron | 20.0% |
| ! | CATTCAATTTATGGATGATA+CGG | - | chr5.2:382348-382367 | None:intergenic | 25.0% |
| ! | GAATATATTAGGCACTAATT+TGG | + | chr5.2:381902-381921 | MS.gene40534:intron | 25.0% |
| ! | TAAACTGCATATATTCAGAA+TGG | + | chr5.2:381738-381757 | MS.gene40534:intron | 25.0% |
| !! | ACAAATAATTTGTACGGTTT+AGG | - | chr5.2:381703-381722 | None:intergenic | 25.0% |
| !! | ATGGATTCTATTGTCAATTT+TGG | + | chr5.2:382205-382224 | MS.gene40534:intron | 25.0% |
| !!! | CAAAAAGTTGATGTACAAAT+TGG | - | chr5.2:382025-382044 | None:intergenic | 25.0% |
| AAATTGGATTCCCATTTAGT+TGG | - | chr5.2:382009-382028 | None:intergenic | 30.0% | |
| AAGATTGTGTTCCTTAATGT+GGG | - | chr5.2:381619-381638 | None:intergenic | 30.0% | |
| AGGAGATGATAATAATAGTC+CGG | - | chr5.2:381382-381401 | None:intergenic | 30.0% | |
| CCATAAATTGAATGTTCTCT+GGG | + | chr5.2:382354-382373 | MS.gene40534:intron | 30.0% | |
| TCAAACACTATACTAGTTGT+AGG | - | chr5.2:382319-382338 | None:intergenic | 30.0% | |
| TCCATAAATTGAATGTTCTC+TGG | + | chr5.2:382353-382372 | MS.gene40534:intron | 30.0% | |
| TGGGAATAATCGGTTATTAT+GGG | + | chr5.2:381922-381941 | MS.gene40534:intron | 30.0% | |
| TTGGGAATAATCGGTTATTA+TGG | + | chr5.2:381921-381940 | MS.gene40534:intron | 30.0% | |
| ! | TTTATAATGGTTGATGCTGA+TGG | + | chr5.2:382186-382205 | MS.gene40534:intron | 30.0% |
| !! | TTTTGACTCAACAACCAATT+TGG | + | chr5.2:381857-381876 | MS.gene40534:intron | 30.0% |
| ACATAATTAACCTGTCTGTC+TGG | + | chr5.2:382106-382125 | MS.gene40534:intron | 35.0% | |
| ATGTAGAACAAGTGCAAACA+AGG | - | chr5.2:382076-382095 | None:intergenic | 35.0% | |
| CATTAAGGAACACAATCTTC+AGG | + | chr5.2:381620-381639 | MS.gene40534:CDS | 35.0% | |
| CCCAGAGAACATTCAATTTA+TGG | - | chr5.2:382357-382376 | None:intergenic | 35.0% | |
| CTGAACGTATTTATGAATGC+AGG | - | chr5.2:382406-382425 | None:intergenic | 35.0% | |
| GAAGATTGTGTTCCTTAATG+TGG | - | chr5.2:381620-381639 | None:intergenic | 35.0% | |
| GGAATAATCGGTTATTATGG+GGG | + | chr5.2:381924-381943 | MS.gene40534:intron | 35.0% | |
| GGCACTAATTTGGGAATAAT+CGG | + | chr5.2:381912-381931 | MS.gene40534:intron | 35.0% | |
| GGGAATAATCGGTTATTATG+GGG | + | chr5.2:381923-381942 | MS.gene40534:intron | 35.0% | |
| TATCCTCAAGAGAAAGAGAA+AGG | - | chr5.2:381658-381677 | None:intergenic | 35.0% | |
| TATGGGGGCTAAATTCAATT+GGG | + | chr5.2:381939-381958 | MS.gene40534:intron | 35.0% | |
| TTATGAATGCAGGATAGCAT+TGG | - | chr5.2:382396-382415 | None:intergenic | 35.0% | |
| TTATGGGGGCTAAATTCAAT+TGG | + | chr5.2:381938-381957 | MS.gene40534:intron | 35.0% | |
| ! | GAATAAGCCTCTTTTTCTCA+GGG | - | chr5.2:382478-382497 | None:intergenic | 35.0% |
| !! | AAACTGAAGAAGGTATTTGC+AGG | + | chr5.2:382509-382528 | MS.gene40534:CDS | 35.0% |
| !! | AACTGAAGAAGGTATTTGCA+GGG | + | chr5.2:382510-382529 | MS.gene40534:CDS | 35.0% |
| ACTCAACAACCAATTTGGTC+TGG | + | chr5.2:381862-381881 | MS.gene40534:intron | 40.0% | |
| CTGTGATGAGAAACTGAAGA+AGG | + | chr5.2:382499-382518 | MS.gene40534:CDS | 40.0% | |
| GTTGATATGCTTGAGATTGC+TGG | + | chr5.2:382542-382561 | MS.gene40534:CDS | 40.0% | |
| TACGTTCAGCAACGTTTGAT+TGG | + | chr5.2:382417-382436 | MS.gene40534:intron | 40.0% | |
| TCTCCTTTCTCTTTCTCTTG+AGG | + | chr5.2:381652-381671 | MS.gene40534:intron | 40.0% | |
| TGTGAGAAACCAGACCAAAT+TGG | - | chr5.2:381874-381893 | None:intergenic | 40.0% | |
| TTCAGAACCCTGAGAAAAAG+AGG | + | chr5.2:382468-382487 | MS.gene40534:intron | 40.0% | |
| ! | CGAATAAGCCTCTTTTTCTC+AGG | - | chr5.2:382479-382498 | None:intergenic | 40.0% |
| ! | GCAGGATAGCATTGGATTAA+TGG | - | chr5.2:382388-382407 | None:intergenic | 40.0% |
| !!! | ATCTCGGGGGAGATTTTTTT+AGG | - | chr5.2:381537-381556 | None:intergenic | 40.0% |
| GTGCAATTGAAACGCCTTGA+TGG | - | chr5.2:382132-382151 | None:intergenic | 45.0% | |
| ! | AATACCGCGAATTTTGCCTC+CGG | - | chr5.2:381508-381527 | None:intergenic | 45.0% |
| ATGGCGGTTTCAATGGCTAC+CGG | + | chr5.2:381360-381379 | MS.gene40534:CDS | 50.0% | |
| CATCTCCTCCTCTAACTCTC+AGG | + | chr5.2:381394-381413 | MS.gene40534:CDS | 50.0% | |
| CCAAATGCTCTTGAGGGCTT+GGG | - | chr5.2:381595-381614 | None:intergenic | 50.0% | |
| CGGTGGCAGAAGTAACTGTT+CGG | - | chr5.2:381467-381486 | None:intergenic | 50.0% | |
| CTCTAACTCTCAGGACTCCA+AGG | + | chr5.2:381403-381422 | MS.gene40534:CDS | 50.0% | |
| CTTGGAGTCCTGAGAGTTAG+AGG | - | chr5.2:381405-381424 | None:intergenic | 50.0% | |
| GAGCATTTGGGCCCACATTA+AGG | + | chr5.2:381605-381624 | MS.gene40534:CDS | 50.0% | |
| GCAGAAGTAACTGTTCGGAG+TGG | - | chr5.2:381462-381481 | None:intergenic | 50.0% | |
| !! | CCAAGCCCTCAAGAGCATTT+GGG | + | chr5.2:381593-381612 | MS.gene40534:CDS | 50.0% |
| ACCTGTCTGTCTGGCCATCA+AGG | + | chr5.2:382115-382134 | MS.gene40534:intron | 55.0% | |
| AGCCATACGCAACGAAGGTG+TGG | - | chr5.2:381439-381458 | None:intergenic | 55.0% | |
| AGTGGAGCCATACGCAACGA+AGG | - | chr5.2:381444-381463 | None:intergenic | 55.0% | |
| CCCAAATGCTCTTGAGGGCT+TGG | - | chr5.2:381596-381615 | None:intergenic | 55.0% | |
| GCTTGGGTTCGGGAAATCTC+GGG | - | chr5.2:381579-381598 | None:intergenic | 55.0% | |
| GGAGTCCTGAGAGTTAGAGG+AGG | - | chr5.2:381402-381421 | None:intergenic | 55.0% | |
| GGCTTGGGTTCGGGAAATCT+CGG | - | chr5.2:381580-381599 | None:intergenic | 55.0% | |
| GGTGTGGGAAACGCAAACCT+TGG | - | chr5.2:381423-381442 | None:intergenic | 55.0% | |
| GTGGGCCCAAATGCTCTTGA+GGG | - | chr5.2:381601-381620 | None:intergenic | 55.0% | |
| TCCCACACCTTCGTTGCGTA+TGG | + | chr5.2:381434-381453 | MS.gene40534:CDS | 55.0% | |
| TGCTCTTGAGGGCTTGGGTT+CGG | - | chr5.2:381590-381609 | None:intergenic | 55.0% | |
| TGTGGGCCCAAATGCTCTTG+AGG | - | chr5.2:381602-381621 | None:intergenic | 55.0% | |
| ! | GCCATACGCAACGAAGGTGT+GGG | - | chr5.2:381438-381457 | None:intergenic | 55.0% |
| !! | CCCAAGCCCTCAAGAGCATT+TGG | + | chr5.2:381592-381611 | MS.gene40534:CDS | 55.0% |
| CCCACCGGAGGCAAAATTCG+CGG | + | chr5.2:381501-381520 | MS.gene40534:CDS | 60.0% | |
| CCCGAGATGCAAGACCTCGT+CGG | + | chr5.2:381549-381568 | MS.gene40534:CDS | 60.0% | |
| CCGACGAGGTCTTGCATCTC+GGG | - | chr5.2:381552-381571 | None:intergenic | 60.0% | |
| CGACGAGGTCTTGCATCTCG+GGG | - | chr5.2:381551-381570 | None:intergenic | 60.0% | |
| GACGAGGTCTTGCATCTCGG+GGG | - | chr5.2:381550-381569 | None:intergenic | 60.0% | |
| GCCGACGAGGTCTTGCATCT+CGG | - | chr5.2:381553-381572 | None:intergenic | 60.0% | |
| GCTCTTGAGGGCTTGGGTTC+GGG | - | chr5.2:381589-381608 | None:intergenic | 60.0% | |
| GGGTTCGGGAAATCTCGGGT+TGG | - | chr5.2:381575-381594 | None:intergenic | 60.0% | |
| ! | ACCGCGAATTTTGCCTCCGG+TGG | - | chr5.2:381505-381524 | None:intergenic | 60.0% |
| ! | ATTTTGCCTCCGGTGGGTGG+AGG | - | chr5.2:381498-381517 | None:intergenic | 60.0% |
| ! | CCGCGAATTTTGCCTCCGGT+GGG | - | chr5.2:381504-381523 | None:intergenic | 60.0% |
| ! | CGAATTTTGCCTCCGGTGGG+TGG | - | chr5.2:381501-381520 | None:intergenic | 60.0% |
| ! | GCCTTGATGGCCAGACAGAC+AGG | - | chr5.2:382119-382138 | None:intergenic | 60.0% |
| !! | AAATCTCGGGTTGGCCGACG+AGG | - | chr5.2:381566-381585 | None:intergenic | 60.0% |
| GGTGGGTGGAGGCTGAGAGA+CGG | - | chr5.2:381487-381506 | None:intergenic | 65.0% | |
| GTCTCTCAGCCTCCACCCAC+CGG | + | chr5.2:381486-381505 | MS.gene40534:CDS | 65.0% | |
| GGGTGGAGGCTGAGAGACGG+TGG | - | chr5.2:381484-381503 | None:intergenic | 70.0% | |
| TCTCAGCCTCCACCCACCGG+AGG | + | chr5.2:381489-381508 | MS.gene40534:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 381360 | 382592 | 381360 | ID=MS.gene40534 |
| chr5.2 | mRNA | 381360 | 382592 | 381360 | ID=MS.gene40534.t1;Parent=MS.gene40534 |
| chr5.2 | exon | 381360 | 381641 | 381360 | ID=MS.gene40534.t1.exon1;Parent=MS.gene40534.t1 |
| chr5.2 | CDS | 381360 | 381641 | 381360 | ID=cds.MS.gene40534.t1;Parent=MS.gene40534.t1 |
| chr5.2 | exon | 382473 | 382592 | 382473 | ID=MS.gene40534.t1.exon2;Parent=MS.gene40534.t1 |
| chr5.2 | CDS | 382473 | 382592 | 382473 | ID=cds.MS.gene40534.t1;Parent=MS.gene40534.t1 |
| Gene Sequence |
| Protein sequence |
