AlfalfaGEDB | MS.gene062352

M. sativa cultivar XinJiangDaYe / MS.gene062352

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062352.t1	XP_003617449.2	86.2	152	16	2	1	152	1	147	4.40E-36	161

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062352.t1	Q9LXR7	60.0	60	24	0	93	152	59	118	2.9e-12	73.2

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062352.t1	G7K3D0	86.2	152	16	2	1	152	1	147	3.1e-36	161.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049341	MS.gene062352	0.828037	1.12E-54	-1.69E-46
MS.gene049756	MS.gene062352	0.801515	8.68E-49	-1.69E-46
MS.gene049887	MS.gene062352	0.828584	8.29E-55	-1.69E-46
MS.gene049979	MS.gene062352	0.806663	7.37E-50	-1.69E-46
MS.gene050020	MS.gene062352	0.811169	8.01E-51	-1.69E-46
MS.gene050277	MS.gene062352	0.811625	6.38E-51	-1.69E-46
MS.gene050438	MS.gene062352	0.80645	8.18E-50	-1.69E-46
MS.gene050586	MS.gene062352	0.826028	3.40E-54	-1.69E-46
MS.gene050807	MS.gene062352	0.824949	6.12E-54	-1.69E-46
MS.gene050815	MS.gene062352	0.829113	6.17E-55	-1.69E-46
MS.gene050838	MS.gene062352	0.810315	1.23E-50	-1.69E-46
MS.gene051063	MS.gene062352	0.829171	5.98E-55	-1.69E-46
MS.gene051245	MS.gene062352	0.805403	1.36E-49	-1.69E-46
MS.gene051328	MS.gene062352	0.804513	2.08E-49	-1.69E-46
MS.gene051577	MS.gene062352	0.820187	7.83E-53	-1.69E-46
MS.gene051633	MS.gene062352	0.820256	7.55E-53	-1.69E-46
MS.gene051687	MS.gene062352	0.817501	3.19E-52	-1.69E-46
MS.gene051746	MS.gene062352	0.833727	4.52E-56	-1.69E-46
MS.gene051748	MS.gene062352	0.824135	9.51E-54	-1.69E-46
MS.gene051757	MS.gene062352	0.803388	3.57E-49	-1.69E-46
MS.gene051789	MS.gene062352	0.803001	4.29E-49	-1.69E-46
MS.gene051850	MS.gene062352	0.804542	2.06E-49	-1.69E-46
MS.gene052133	MS.gene062352	0.83381	4.30E-56	-1.69E-46
MS.gene052286	MS.gene062352	0.802598	5.20E-49	-1.69E-46
MS.gene052302	MS.gene062352	0.83399	3.88E-56	-1.69E-46
MS.gene052376	MS.gene062352	0.830223	3.31E-55	-1.69E-46
MS.gene052665	MS.gene062352	0.835966	1.23E-56	-1.69E-46
MS.gene052732	MS.gene062352	0.801311	9.56E-49	-1.69E-46
MS.gene052856	MS.gene062352	0.819929	8.97E-53	-1.69E-46
MS.gene052858	MS.gene062352	0.80452	2.08E-49	-1.69E-46
MS.gene052860	MS.gene062352	0.803777	2.96E-49	-1.69E-46
MS.gene052947	MS.gene062352	0.800745	1.25E-48	-1.69E-46
MS.gene053132	MS.gene062352	0.834337	3.18E-56	-1.69E-46
MS.gene053437	MS.gene062352	0.861608	9.10E-64	-1.69E-46
MS.gene053630	MS.gene062352	0.809352	1.97E-50	-1.69E-46
MS.gene05462	MS.gene062352	0.805657	1.20E-49	-1.69E-46
MS.gene055465	MS.gene062352	0.800691	1.28E-48	-1.69E-46
MS.gene055466	MS.gene062352	0.804197	2.42E-49	-1.69E-46
MS.gene055468	MS.gene062352	0.822023	2.96E-53	-1.69E-46
MS.gene055580	MS.gene062352	-0.810364	1.20E-50	-1.69E-46
MS.gene055591	MS.gene062352	-0.814878	1.23E-51	-1.69E-46
MS.gene055891	MS.gene062352	0.806766	7.01E-50	-1.69E-46
MS.gene056043	MS.gene062352	-0.821762	3.40E-53	-1.69E-46
MS.gene056069	MS.gene062352	-0.856391	3.32E-62	-1.69E-46
MS.gene056432	MS.gene062352	0.824835	6.51E-54	-1.69E-46
MS.gene056584	MS.gene062352	0.817103	3.92E-52	-1.69E-46
MS.gene056631	MS.gene062352	0.803633	3.18E-49	-1.69E-46
MS.gene056760	MS.gene062352	0.814765	1.30E-51	-1.69E-46
MS.gene057057	MS.gene062352	0.848835	4.76E-60	-1.69E-46
MS.gene057140	MS.gene062352	0.800443	1.44E-48	-1.69E-46
MS.gene058084	MS.gene062352	0.808159	3.55E-50	-1.69E-46
MS.gene058182	MS.gene062352	0.814517	1.48E-51	-1.69E-46
MS.gene058851	MS.gene062352	0.828278	9.83E-55	-1.69E-46
MS.gene058906	MS.gene062352	0.873133	1.86E-67	-1.69E-46
MS.gene059713	MS.gene062352	0.806272	8.92E-50	-1.69E-46
MS.gene059937	MS.gene062352	0.81989	9.16E-53	-1.69E-46
MS.gene06001	MS.gene062352	0.854648	1.07E-61	-1.69E-46
MS.gene060165	MS.gene062352	0.818507	1.89E-52	-1.69E-46
MS.gene060587	MS.gene062352	0.818958	1.49E-52	-1.69E-46
MS.gene060619	MS.gene062352	0.849413	3.29E-60	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062352.t1	MTR_5g091690	94.118	153	2	3	1	152	1	147	2.05e-97	277

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062352.t1	AT2G42870	53.704	54	25	0	99	152	65	118	4.30e-17	72.8
MS.gene062352.t1	AT3G58850	59.649	57	23	0	96	152	62	118	4.34e-17	72.8

Find 23 sgRNAs with CRISPR-Local

Find 28 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATGAAGAAGGTAGTGATGAT+AGG	0.324152	5.1:+73327042	MS.gene062352:CDS
GTACCTAATGGTGAGTCTTT+TGG	0.329931	5.1:+73327104	MS.gene062352:CDS
TACTGGTTTCTTTGAAAAGT+TGG	0.339174	5.1:+73327202	MS.gene062352:CDS
AAAGCTTTGAAAGCTCTTAC+TGG	0.352948	5.1:+73327185	MS.gene062352:CDS
CACCTTCTGTGCACCGTCTT+CGG	0.374930	5.1:-73326917	None:intergenic
TGAAGAAGGTAGTGATGATA+GGG	0.429741	5.1:+73327043	MS.gene062352:CDS
GAACACTACTGCTACTACTC+AGG	0.431911	5.1:+73326860	MS.gene062352:CDS
ACACCAAAAGACTCACCATT+AGG	0.468322	5.1:-73327107	None:intergenic
TGCTGTTGAGGAGAAAGAAA+AGG	0.502912	5.1:+73327007	MS.gene062352:CDS
GAGAAGGACAAGACTAAACT+TGG	0.504810	5.1:+73327224	MS.gene062352:CDS
AAGATGTTGATAAAAGAAGT+TGG	0.520911	5.1:+73326957	MS.gene062352:CDS
AGCCGAAGACGGTGCACAGA+AGG	0.521620	5.1:+73326915	MS.gene062352:CDS
TTTCTTTGAAAAGTTGGAGA+AGG	0.524494	5.1:+73327208	MS.gene062352:CDS
AGAAGGTGGTGGTGGTAGCA+AGG	0.571947	5.1:+73326932	MS.gene062352:CDS
CGGTGCACAGAAGGTGGTGG+TGG	0.573721	5.1:+73326924	MS.gene062352:CDS
CGAAGACGGTGCACAGAAGG+TGG	0.575194	5.1:+73326918	MS.gene062352:CDS
GAGTGATGATTGTGCTGTTG+AGG	0.584490	5.1:+73326995	MS.gene062352:CDS
ATCCATGGAAGAAGAAAACA+TGG	0.585509	5.1:+73326791	None:intergenic
AAGGACAAGACTAAACTTGG+AGG	0.589871	5.1:+73327227	MS.gene062352:CDS
GAAAGATTCATGCATTGCAG+AGG	0.606840	5.1:+73327078	MS.gene062352:CDS
AGACGGTGCACAGAAGGTGG+TGG	0.609872	5.1:+73326921	MS.gene062352:CDS
AACACTACTGCTACTACTCA+GGG	0.614572	5.1:+73326861	MS.gene062352:CDS
TTGCAGAGGATTGTACCTAA+TGG	0.622571	5.1:+73327092	MS.gene062352:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAGATGTTGATAAAAGAAGT+TGG	+	chr5.1:73326957-73326976	MS.gene062352:CDS	25.0%
!!!	ATGTTTTTGTTGAGAAATGT+TGG	-	chr5.1:73326840-73326859	None:intergenic	25.0%
	GAAGAAAAAGAAGATGAAGA+AGG	+	chr5.1:73327029-73327048	MS.gene062352:CDS	30.0%
!	AAAAGTCTCTGCATGTTTTA+CGG	+	chr5.1:73326889-73326908	MS.gene062352:CDS	30.0%
!	TTTCTTTGAAAAGTTGGAGA+AGG	+	chr5.1:73327208-73327227	MS.gene062352:CDS	30.0%
!!	TACTGGTTTCTTTGAAAAGT+TGG	+	chr5.1:73327202-73327221	MS.gene062352:CDS	30.0%
	ATGAAGAAGGTAGTGATGAT+AGG	+	chr5.1:73327042-73327061	MS.gene062352:CDS	35.0%
	TGAAGAAGGTAGTGATGATA+GGG	+	chr5.1:73327043-73327062	MS.gene062352:CDS	35.0%
!	AAGCTTTTTGATGAAACTGC+TGG	+	chr5.1:73327134-73327153	MS.gene062352:CDS	35.0%
!!	AAAGCTTTGAAAGCTCTTAC+TGG	+	chr5.1:73327185-73327204	MS.gene062352:CDS	35.0%
	AACACTACTGCTACTACTCA+GGG	+	chr5.1:73326861-73326880	MS.gene062352:CDS	40.0%
	AAGGACAAGACTAAACTTGG+AGG	+	chr5.1:73327227-73327246	MS.gene062352:CDS	40.0%
	ACACCAAAAGACTCACCATT+AGG	-	chr5.1:73327110-73327129	None:intergenic	40.0%
	GAAAGATTCATGCATTGCAG+AGG	+	chr5.1:73327078-73327097	MS.gene062352:CDS	40.0%
	GAGAAGGACAAGACTAAACT+TGG	+	chr5.1:73327224-73327243	MS.gene062352:CDS	40.0%
	TGCTGTTGAGGAGAAAGAAA+AGG	+	chr5.1:73327007-73327026	MS.gene062352:CDS	40.0%
	TTGCAGAGGATTGTACCTAA+TGG	+	chr5.1:73327092-73327111	MS.gene062352:CDS	40.0%
!	GTACCTAATGGTGAGTCTTT+TGG	+	chr5.1:73327104-73327123	MS.gene062352:CDS	40.0%
!	TAATGGTGAGTCTTTTGGTG+TGG	+	chr5.1:73327109-73327128	MS.gene062352:CDS	40.0%
	GAACACTACTGCTACTACTC+AGG	+	chr5.1:73326860-73326879	MS.gene062352:CDS	45.0%
!	GAGTGATGATTGTGCTGTTG+AGG	+	chr5.1:73326995-73327014	MS.gene062352:CDS	45.0%
!	TTTTACGGCGAAGCCGAAGA+CGG	+	chr5.1:73326904-73326923	MS.gene062352:CDS	50.0%
	CACCTTCTGTGCACCGTCTT+CGG	-	chr5.1:73326920-73326939	None:intergenic	55.0%
!!	AGAAGGTGGTGGTGGTAGCA+AGG	+	chr5.1:73326932-73326951	MS.gene062352:CDS	55.0%
	AGACGGTGCACAGAAGGTGG+TGG	+	chr5.1:73326921-73326940	MS.gene062352:CDS	60.0%
	AGCCGAAGACGGTGCACAGA+AGG	+	chr5.1:73326915-73326934	MS.gene062352:CDS	60.0%
	CGAAGACGGTGCACAGAAGG+TGG	+	chr5.1:73326918-73326937	MS.gene062352:CDS	60.0%
!	CGGTGCACAGAAGGTGGTGG+TGG	+	chr5.1:73326924-73326943	MS.gene062352:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	73326795	73327253	73326795	ID=MS.gene062352
chr5.1	mRNA	73326795	73327253	73326795	ID=MS.gene062352.t1;Parent=MS.gene062352
chr5.1	exon	73326795	73327253	73326795	ID=MS.gene062352.t1.exon1;Parent=MS.gene062352.t1
chr5.1	CDS	73326795	73327253	73326795	ID=cds.MS.gene062352.t1;Parent=MS.gene062352.t1

Gene Sequence

>MS.gene062352

ATGGAAGAAGAAAACATGGAAGAAGAGAGAAACAGAATCATACCAACATTTCTCAACAAAAACATGAACACTACTGCTACTACTCAGGGTGTTCAAAAGTCTCTGCATGTTTTACGGCGAAGCCGAAGACGGTGCACAGAAGGTGGTGGTGGTAGCAAGGAAAAGATGTTGATAAAAGAAGTTGGTATGAATGATGTGAAGAGTGATGATTGTGCTGTTGAGGAGAAAGAAAAGGAAGAAAAAGAAGATGAAGAAGGTAGTGATGATAGGGAAGAAGTAGAGAGAAAGATTCATGCATTGCAGAGGATTGTACCTAATGGTGAGTCTTTTGGTGTGGACAAGCTTTTTGATGAAACTGCTGGCTATATTGTTGCTTTACAGTATCAAGTCAAAGCTTTGAAAGCTCTTACTGGTTTCTTTGAAAAGTTGGAGAAGGACAAGACTAAACTTGGAGGTTGA

Protein sequence

>MS.gene062352.t1

MEEENMEEERNRIIPTFLNKNMNTTATTQGVQKSLHVLRRSRRRCTEGGGGSKEKMLIKEVGMNDVKSDDCAVEEKEKEEKEDEEGSDDREEVERKIHALQRIVPNGESFGVDKLFDETAGYIVALQYQVKALKALTGFFEKLEKDKTKLGG