Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063635.t1 | XP_003616193.3 | 98.8 | 595 | 7 | 0 | 1 | 595 | 13 | 607 | 0.00E+00 | 1151.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063635.t1 | Q940S0 | 77.0 | 595 | 134 | 2 | 1 | 595 | 1 | 592 | 2.3e-259 | 896.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063635.t1 | A0A396HU32 | 98.8 | 595 | 7 | 0 | 1 | 595 | 13 | 607 | 0.0e+00 | 1151.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049222 | MS.gene063635 | -0.814433 | 1.54E-51 | -1.69E-46 |
| MS.gene049232 | MS.gene063635 | -0.855449 | 6.26E-62 | -1.69E-46 |
| MS.gene049611 | MS.gene063635 | 0.810484 | 1.13E-50 | -1.69E-46 |
| MS.gene050170 | MS.gene063635 | -0.807894 | 4.04E-50 | -1.69E-46 |
| MS.gene050216 | MS.gene063635 | -0.843961 | 1.02E-58 | -1.69E-46 |
| MS.gene050323 | MS.gene063635 | -0.826354 | 2.84E-54 | -1.69E-46 |
| MS.gene050381 | MS.gene063635 | 0.837908 | 3.94E-57 | -1.69E-46 |
| MS.gene050496 | MS.gene063635 | -0.819248 | 1.28E-52 | -1.69E-46 |
| MS.gene050504 | MS.gene063635 | -0.841107 | 5.81E-58 | -1.69E-46 |
| MS.gene050612 | MS.gene063635 | -0.812721 | 3.68E-51 | -1.69E-46 |
| MS.gene050647 | MS.gene063635 | 0.808012 | 3.82E-50 | -1.69E-46 |
| MS.gene050675 | MS.gene063635 | -0.80196 | 7.04E-49 | -1.69E-46 |
| MS.gene050868 | MS.gene063635 | -0.849737 | 2.67E-60 | -1.69E-46 |
| MS.gene050871 | MS.gene063635 | -0.852905 | 3.40E-61 | -1.69E-46 |
| MS.gene050904 | MS.gene063635 | -0.809653 | 1.70E-50 | -1.69E-46 |
| MS.gene05104 | MS.gene063635 | 0.808374 | 3.20E-50 | -1.69E-46 |
| MS.gene051127 | MS.gene063635 | 0.816711 | 4.80E-52 | -1.69E-46 |
| MS.gene051138 | MS.gene063635 | 0.820049 | 8.42E-53 | -1.69E-46 |
| MS.gene051268 | MS.gene063635 | -0.838401 | 2.94E-57 | -1.69E-46 |
| MS.gene052164 | MS.gene063635 | -0.816425 | 5.57E-52 | -1.69E-46 |
| MS.gene052966 | MS.gene063635 | -0.821568 | 3.77E-53 | -1.69E-46 |
| MS.gene053420 | MS.gene063635 | 0.832438 | 9.45E-56 | -1.69E-46 |
| MS.gene054595 | MS.gene063635 | -0.807641 | 4.58E-50 | -1.69E-46 |
| MS.gene054706 | MS.gene063635 | 0.824139 | 9.49E-54 | -1.69E-46 |
| MS.gene055202 | MS.gene063635 | 0.837338 | 5.51E-57 | -1.69E-46 |
| MS.gene055502 | MS.gene063635 | -0.813345 | 2.68E-51 | -1.69E-46 |
| MS.gene055577 | MS.gene063635 | -0.829644 | 4.59E-55 | -1.69E-46 |
| MS.gene055748 | MS.gene063635 | -0.81311 | 3.02E-51 | -1.69E-46 |
| MS.gene055750 | MS.gene063635 | -0.80681 | 6.87E-50 | -1.69E-46 |
| MS.gene055751 | MS.gene063635 | -0.819749 | 9.86E-53 | -1.69E-46 |
| MS.gene05589 | MS.gene063635 | -0.834088 | 3.67E-56 | -1.69E-46 |
| MS.gene056387 | MS.gene063635 | -0.814442 | 1.54E-51 | -1.69E-46 |
| MS.gene056504 | MS.gene063635 | -0.844075 | 9.47E-59 | -1.69E-46 |
| MS.gene056856 | MS.gene063635 | 0.81165 | 6.30E-51 | -1.69E-46 |
| MS.gene057768 | MS.gene063635 | 0.813457 | 2.54E-51 | -1.69E-46 |
| MS.gene058099 | MS.gene063635 | 0.805004 | 1.65E-49 | -1.69E-46 |
| MS.gene058108 | MS.gene063635 | 0.805321 | 1.41E-49 | -1.69E-46 |
| MS.gene058109 | MS.gene063635 | 0.817646 | 2.96E-52 | -1.69E-46 |
| MS.gene058157 | MS.gene063635 | -0.801622 | 8.25E-49 | -1.69E-46 |
| MS.gene058171 | MS.gene063635 | 0.859598 | 3.70E-63 | -1.69E-46 |
| MS.gene058173 | MS.gene063635 | 0.84943 | 3.25E-60 | -1.69E-46 |
| MS.gene058174 | MS.gene063635 | 0.802662 | 5.04E-49 | -1.69E-46 |
| MS.gene058175 | MS.gene063635 | 0.862227 | 5.88E-64 | -1.69E-46 |
| MS.gene058268 | MS.gene063635 | 0.807656 | 4.54E-50 | -1.69E-46 |
| MS.gene058269 | MS.gene063635 | 0.806692 | 7.27E-50 | -1.69E-46 |
| MS.gene05837 | MS.gene063635 | -0.812561 | 3.98E-51 | -1.69E-46 |
| MS.gene059022 | MS.gene063635 | -0.819289 | 1.26E-52 | -1.69E-46 |
| MS.gene059037 | MS.gene063635 | 0.802921 | 4.46E-49 | -1.69E-46 |
| MS.gene059045 | MS.gene063635 | 0.860997 | 1.40E-63 | -1.69E-46 |
| MS.gene059367 | MS.gene063635 | -0.813404 | 2.60E-51 | -1.69E-46 |
| MS.gene059865 | MS.gene063635 | -0.851879 | 6.66E-61 | -1.69E-46 |
| MS.gene059943 | MS.gene063635 | 0.813867 | 2.06E-51 | -1.69E-46 |
| MS.gene06000 | MS.gene063635 | -0.812469 | 4.17E-51 | -1.69E-46 |
| MS.gene060482 | MS.gene063635 | -0.803104 | 4.09E-49 | -1.69E-46 |
| MS.gene060595 | MS.gene063635 | 0.82411 | 9.64E-54 | -1.69E-46 |
| MS.gene060703 | MS.gene063635 | -0.810344 | 1.21E-50 | -1.69E-46 |
| MS.gene060762 | MS.gene063635 | -0.824972 | 6.04E-54 | -1.69E-46 |
| MS.gene060778 | MS.gene063635 | -0.827365 | 1.63E-54 | -1.69E-46 |
| MS.gene06077 | MS.gene063635 | -0.818658 | 1.75E-52 | -1.69E-46 |
| MS.gene060982 | MS.gene063635 | -0.831112 | 2.01E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063635.t1 | MTR_5g077170 | 98.983 | 590 | 6 | 0 | 6 | 595 | 2 | 591 | 0.0 | 1208 |
| MS.gene063635.t1 | MTR_6g074910 | 76.831 | 587 | 134 | 1 | 9 | 595 | 4 | 588 | 0.0 | 930 |
| MS.gene063635.t1 | MTR_4g053270 | 49.126 | 572 | 287 | 2 | 24 | 595 | 22 | 589 | 0.0 | 568 |
| MS.gene063635.t1 | MTR_8g088730 | 41.522 | 578 | 320 | 7 | 26 | 595 | 22 | 589 | 8.55e-152 | 449 |
| MS.gene063635.t1 | MTR_2g006300 | 42.014 | 576 | 318 | 7 | 26 | 595 | 18 | 583 | 2.65e-151 | 448 |
| MS.gene063635.t1 | MTR_8g016270 | 32.293 | 641 | 380 | 9 | 3 | 595 | 14 | 648 | 4.24e-115 | 357 |
| MS.gene063635.t1 | MTR_1g014080 | 32.353 | 646 | 377 | 11 | 1 | 595 | 1 | 637 | 3.73e-110 | 343 |
| MS.gene063635.t1 | MTR_3g105950 | 32.072 | 608 | 360 | 8 | 35 | 595 | 35 | 636 | 2.22e-105 | 331 |
| MS.gene063635.t1 | MTR_5g098730 | 27.192 | 673 | 402 | 16 | 1 | 595 | 3 | 665 | 3.37e-75 | 253 |
| MS.gene063635.t1 | MTR_0204s0010 | 31.702 | 429 | 270 | 9 | 178 | 595 | 32 | 448 | 2.29e-71 | 236 |
| MS.gene063635.t1 | MTR_3g082140 | 25.509 | 639 | 387 | 15 | 31 | 595 | 36 | 659 | 4.42e-69 | 236 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063635.t1 | AT2G01970 | 77.336 | 578 | 130 | 1 | 18 | 595 | 16 | 592 | 0.0 | 928 |
| MS.gene063635.t1 | AT5G37310 | 76.361 | 588 | 138 | 1 | 8 | 595 | 7 | 593 | 0.0 | 926 |
| MS.gene063635.t1 | AT5G37310 | 76.361 | 588 | 138 | 1 | 8 | 595 | 7 | 593 | 0.0 | 926 |
| MS.gene063635.t1 | AT1G14670 | 76.975 | 595 | 134 | 2 | 1 | 595 | 1 | 592 | 0.0 | 916 |
| MS.gene063635.t1 | AT1G08350 | 48.048 | 589 | 301 | 4 | 8 | 595 | 5 | 589 | 0.0 | 579 |
| MS.gene063635.t1 | AT1G08350 | 48.048 | 589 | 301 | 4 | 8 | 595 | 5 | 589 | 0.0 | 579 |
| MS.gene063635.t1 | AT1G08350 | 47.535 | 507 | 262 | 3 | 90 | 595 | 5 | 508 | 1.32e-170 | 494 |
| MS.gene063635.t1 | AT1G08350 | 44.732 | 541 | 285 | 4 | 8 | 547 | 5 | 532 | 2.24e-167 | 487 |
| MS.gene063635.t1 | AT1G10950 | 40.838 | 573 | 323 | 7 | 29 | 595 | 27 | 589 | 1.43e-145 | 434 |
| MS.gene063635.t1 | AT3G13772 | 32.792 | 616 | 349 | 8 | 33 | 595 | 38 | 641 | 7.06e-116 | 358 |
| MS.gene063635.t1 | AT1G55130 | 32.792 | 616 | 349 | 9 | 33 | 595 | 34 | 637 | 6.21e-112 | 348 |
| MS.gene063635.t1 | AT5G10840 | 31.357 | 641 | 386 | 8 | 3 | 595 | 14 | 648 | 6.15e-107 | 336 |
| MS.gene063635.t1 | AT5G25100 | 30.901 | 644 | 389 | 8 | 2 | 595 | 7 | 644 | 1.55e-106 | 335 |
| MS.gene063635.t1 | AT5G25100 | 31.967 | 610 | 359 | 8 | 36 | 595 | 48 | 651 | 1.50e-104 | 330 |
| MS.gene063635.t1 | AT2G24170 | 32.538 | 587 | 344 | 7 | 56 | 595 | 56 | 637 | 2.31e-104 | 328 |
| MS.gene063635.t1 | AT5G35160 | 31.504 | 419 | 269 | 7 | 186 | 595 | 221 | 630 | 7.92e-64 | 221 |
| MS.gene063635.t1 | AT5G35160 | 31.504 | 419 | 269 | 7 | 186 | 595 | 249 | 658 | 1.11e-63 | 221 |
| MS.gene063635.t1 | AT5G35160 | 31.504 | 419 | 269 | 7 | 186 | 595 | 249 | 658 | 1.11e-63 | 221 |
| MS.gene063635.t1 | AT5G35160 | 31.504 | 419 | 269 | 7 | 186 | 595 | 249 | 658 | 1.11e-63 | 221 |
| MS.gene063635.t1 | AT4G12650 | 28.785 | 469 | 306 | 11 | 143 | 595 | 196 | 652 | 1.27e-60 | 213 |
| MS.gene063635.t1 | AT2G24170 | 28.499 | 393 | 230 | 6 | 56 | 401 | 56 | 444 | 1.91e-50 | 181 |
Find 113 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTGTAACCTCACCTTTAT+TGG | 0.159809 | 5.2:+65900962 | MS.gene063635:CDS |
| TTCCTTTGTGGTGGATCAAC+TGG | 0.175262 | 5.2:+65901776 | MS.gene063635:CDS |
| ACTATGATGACTTGCCAATT+TGG | 0.269300 | 5.2:+65899123 | MS.gene063635:CDS |
| ACCTCACCTTTATTGGTATT+GGG | 0.275560 | 5.2:+65900969 | MS.gene063635:CDS |
| TCAACTGGGTTGTTCATATA+TGG | 0.277084 | 5.2:+65901791 | MS.gene063635:CDS |
| AACCTCACCTTTATTGGTAT+TGG | 0.284277 | 5.2:+65900968 | MS.gene063635:CDS |
| TGCATTTCAGGTGAAAATTT+TGG | 0.287409 | 5.2:+65900809 | MS.gene063635:intron |
| ACTTCCATCCAGTCTCTTCT+TGG | 0.288713 | 5.2:-65899793 | None:intergenic |
| TTGGTATTGGGTGGGATTGC+TGG | 0.299301 | 5.2:+65900981 | MS.gene063635:CDS |
| CTATGATGACTTGCCAATTT+GGG | 0.300228 | 5.2:+65899124 | MS.gene063635:CDS |
| GTAGTAGAGTTCAATGAAAA+TGG | 0.321529 | 5.2:-65901132 | None:intergenic |
| GATATTAGGTCTTTCCTTTG+TGG | 0.336277 | 5.2:+65901764 | MS.gene063635:intron |
| AATGAACAAAATGCTGTATA+TGG | 0.340162 | 5.2:-65901189 | None:intergenic |
| CCCTTCAATCATGTAATAGA+AGG | 0.351238 | 5.2:-65900412 | None:intergenic |
| TTACGGTACCAAGGTAGTTT+AGG | 0.351664 | 5.2:-65901065 | None:intergenic |
| ATCCTCACTCTCACATCATT+TGG | 0.357975 | 5.2:+65899400 | MS.gene063635:CDS |
| CTTCCAAGGAAACCCCAAAT+TGG | 0.359340 | 5.2:-65899137 | None:intergenic |
| ATATTTATGCTTGCTCTAGT+TGG | 0.366853 | 5.2:+65900297 | MS.gene063635:CDS |
| TATGGTTTCTTTCTTATGCT+TGG | 0.371120 | 5.2:+65901902 | MS.gene063635:CDS |
| TCATCAAGTGCCTCTTCATC+TGG | 0.382938 | 5.2:-65899770 | None:intergenic |
| TAGTGCTGCAGTGGAGTTAT+AGG | 0.383154 | 5.2:-65900901 | None:intergenic |
| ATCAAGAATTCAAGTTTGTA+AGG | 0.385654 | 5.2:-65899002 | None:intergenic |
| ATCCCACCCAATACCAATAA+AGG | 0.387694 | 5.2:-65900975 | None:intergenic |
| CAGATATTCCATTTGAGAAA+AGG | 0.390734 | 5.2:+65899357 | MS.gene063635:CDS |
| TTGCCAATTTGGGGTTTCCT+TGG | 0.391409 | 5.2:+65899134 | MS.gene063635:CDS |
| ATTTCACATATTCTGTCAAA+TGG | 0.396091 | 5.2:+65899327 | MS.gene063635:CDS |
| TTCGCCGCAGCACTTGGAAC+AGG | 0.404698 | 5.2:+65899860 | MS.gene063635:CDS |
| CCCACCTTGTTTGCATAAAA+CGG | 0.409711 | 5.2:-65897759 | None:intergenic |
| AAACTAACCTGGTGAACAAA+AGG | 0.409921 | 5.2:-65898815 | None:intergenic |
| GGAAAAGTCAACGACATGTT+TGG | 0.412145 | 5.2:+65897644 | MS.gene063635:CDS |
| GCGAACAAAGACTTAAATCT+TGG | 0.421824 | 5.2:-65899842 | None:intergenic |
| CACATCATTTGGAAATCCAT+TGG | 0.423796 | 5.2:+65899411 | MS.gene063635:CDS |
| GAAGGAAGCTGCAGAATAAC+CGG | 0.424677 | 5.2:-65900394 | None:intergenic |
| TCCACTGCAGCACTACCCTT+TGG | 0.427646 | 5.2:+65900909 | MS.gene063635:CDS |
| AACAAAGCTCCCCTGTTGTA+TGG | 0.432106 | 5.2:-65900330 | None:intergenic |
| GCATTAACGTCCGGCATTGC+CGG | 0.432563 | 5.2:+65900375 | MS.gene063635:CDS |
| TCCTTCTATTACATGATTGA+AGG | 0.433770 | 5.2:+65900411 | MS.gene063635:CDS |
| GGGAGCTTTGTTTACTGCAC+TGG | 0.435481 | 5.2:+65900341 | MS.gene063635:CDS |
| CCGTAAAACTCTTCCTCAAA+TGG | 0.437640 | 5.2:+65901082 | MS.gene063635:CDS |
| TCTGAGCTATTCACACTTGA+GGG | 0.440042 | 5.2:-65901975 | None:intergenic |
| TTTCTTATGCTTGGAACTGT+GGG | 0.441101 | 5.2:+65901911 | MS.gene063635:CDS |
| GTCAAGTCCACAACAGCATT+CGG | 0.447696 | 5.2:-65899281 | None:intergenic |
| AATCTCCCTCGGATACTTGT+TGG | 0.451259 | 5.2:-65901042 | None:intergenic |
| CACCTTTATTGGTATTGGGT+GGG | 0.453576 | 5.2:+65900973 | MS.gene063635:CDS |
| CATCAGTTTCAAATCTTCCA+AGG | 0.455164 | 5.2:-65899151 | None:intergenic |
| CTTTCTTATGCTTGGAACTG+TGG | 0.458480 | 5.2:+65901910 | MS.gene063635:CDS |
| GAAGAAAAGAAAGAAGATCT+TGG | 0.467281 | 5.2:+65898945 | MS.gene063635:CDS |
| TCTTTGTTCGCCGCAGCACT+TGG | 0.467861 | 5.2:+65899854 | MS.gene063635:CDS |
| GTTACTGTTCTTCTCTTGAC+CGG | 0.473664 | 5.2:+65899455 | MS.gene063635:CDS |
| ATTAGGTCTTTCCTTTGTGG+TGG | 0.477997 | 5.2:+65901767 | MS.gene063635:intron |
| ATCTAACCTGGGATTATGAA+AGG | 0.482130 | 5.2:-65897784 | None:intergenic |
| TCCTTTGTGGTGGATCAACT+GGG | 0.485374 | 5.2:+65901777 | MS.gene063635:CDS |
| TACATGGCTTGCATTTGCTA+TGG | 0.488624 | 5.2:+65901884 | MS.gene063635:CDS |
| TGCAGAATAACCGGCAATGC+CGG | 0.490602 | 5.2:-65900385 | None:intergenic |
| TTTATTGAATGCAGAAAATG+TGG | 0.491207 | 5.2:+65898923 | MS.gene063635:intron |
| ACTACATATTTGCCAGTGTG+TGG | 0.492038 | 5.2:+65901150 | MS.gene063635:CDS |
| CATGCAAGATCAGATATGTC+TGG | 0.493757 | 5.2:+65901833 | MS.gene063635:CDS |
| AACTCTTCCTCAAATGGCTA+TGG | 0.495729 | 5.2:+65901088 | MS.gene063635:CDS |
| GAGAATCATGGTAAGGAATC+CGG | 0.499072 | 5.2:-65899474 | None:intergenic |
| TTAACTGGTAGTCTATTCTC+TGG | 0.501357 | 5.2:+65900834 | MS.gene063635:CDS |
| CTACATATTTGCCAGTGTGT+GGG | 0.507683 | 5.2:+65901151 | MS.gene063635:CDS |
| CTTCCTCAAATGGCTATGGC+TGG | 0.509056 | 5.2:+65901092 | MS.gene063635:CDS |
| TCAGATCATCGTTATAAAGA+AGG | 0.510924 | 5.2:+65897726 | MS.gene063635:CDS |
| AATCCAGCCATAGCCATTTG+AGG | 0.511166 | 5.2:-65901095 | None:intergenic |
| TATTCCATTTGAGAAAAGGT+TGG | 0.520532 | 5.2:+65899361 | MS.gene063635:CDS |
| TGGGACCCTTTCATAATCCC+AGG | 0.520558 | 5.2:+65897778 | MS.gene063635:CDS |
| CCTTCTATTACATGATTGAA+GGG | 0.526700 | 5.2:+65900412 | MS.gene063635:CDS |
| GTCATATACGCATTAACGTC+CGG | 0.529722 | 5.2:+65900366 | MS.gene063635:CDS |
| TTCTGAGCTATTCACACTTG+AGG | 0.535196 | 5.2:-65901976 | None:intergenic |
| TCACCTTTATTGGTATTGGG+TGG | 0.535989 | 5.2:+65900972 | MS.gene063635:CDS |
| AAGTACGCGCATGAGAATCA+TGG | 0.538018 | 5.2:-65899486 | None:intergenic |
| AATAACCACAATTGTTCCAA+AGG | 0.538698 | 5.2:-65900925 | None:intergenic |
| AACTAACCTGGTGAACAAAA+GGG | 0.541607 | 5.2:-65898814 | None:intergenic |
| AAGGTGCTTGAAACTCTGAT+TGG | 0.544875 | 5.2:-65901013 | None:intergenic |
| TCTAACCTGGGATTATGAAA+GGG | 0.548279 | 5.2:-65897783 | None:intergenic |
| TACATATTTGCCAGTGTGTG+GGG | 0.552002 | 5.2:+65901152 | MS.gene063635:CDS |
| TCAATGAAAATGGCACTGAA+TGG | 0.553149 | 5.2:-65901122 | None:intergenic |
| CTTGATGACCAAGAAGAGAC+TGG | 0.553949 | 5.2:+65899785 | MS.gene063635:CDS |
| AAAGATGCTGACAAGAAAAG+AGG | 0.554105 | 5.2:+65899052 | MS.gene063635:CDS |
| ATACTTTCAACTTGCTGCTG+AGG | 0.554818 | 5.2:+65901262 | MS.gene063635:CDS |
| CGCGCATGAGAATCATGGTA+AGG | 0.556742 | 5.2:-65899481 | None:intergenic |
| CTGAGGATCATGAATGGTGG+TGG | 0.559393 | 5.2:+65901279 | MS.gene063635:CDS |
| TCCAAAGGGTAGTGCTGCAG+TGG | 0.561479 | 5.2:-65900910 | None:intergenic |
| AGAAGATAGAGTGGTAAATG+TGG | 0.567360 | 5.2:+65899304 | MS.gene063635:CDS |
| ACTACCCTTTGGAACAATTG+TGG | 0.569004 | 5.2:+65900920 | MS.gene063635:CDS |
| TATGATGACTTGCCAATTTG+GGG | 0.574034 | 5.2:+65899125 | MS.gene063635:CDS |
| AAATGATCCGAATGCTGTTG+TGG | 0.575333 | 5.2:+65899274 | MS.gene063635:CDS |
| ATAACCACAATTGTTCCAAA+GGG | 0.579246 | 5.2:-65900924 | None:intergenic |
| GGATACTTGTTGGTTCGACA+AGG | 0.582998 | 5.2:-65901032 | None:intergenic |
| ATGACCAAGAAGAGACTGGA+TGG | 0.583101 | 5.2:+65899789 | MS.gene063635:CDS |
| AAAAGATGTTGACACAAATG+AGG | 0.586558 | 5.2:+65899175 | MS.gene063635:CDS |
| AGTTAATAATAGAAAACCAA+TGG | 0.587731 | 5.2:-65899427 | None:intergenic |
| GACATTCAGCTTTCTTAACA+CGG | 0.594648 | 5.2:+65900869 | MS.gene063635:CDS |
| TAGGTTTACACCAGATGAAG+AGG | 0.600920 | 5.2:+65899760 | MS.gene063635:intron |
| GGGAGATTCCTAAACTACCT+TGG | 0.601031 | 5.2:+65901057 | MS.gene063635:CDS |
| TTGCTGCTGAGGATCATGAA+TGG | 0.608218 | 5.2:+65901273 | MS.gene063635:CDS |
| CAGACATATCTGATCTTGCA+TGG | 0.613786 | 5.2:-65901832 | None:intergenic |
| GCTATTCACACTTGAGGGAA+CGG | 0.614276 | 5.2:-65901970 | None:intergenic |
| CTGCTGAGGATCATGAATGG+TGG | 0.620026 | 5.2:+65901276 | MS.gene063635:CDS |
| ACTGGATGGAAGTATATCCA+TGG | 0.622758 | 5.2:+65899803 | MS.gene063635:CDS |
| GTCGAACCAACAAGTATCCG+AGG | 0.624487 | 5.2:+65901036 | MS.gene063635:CDS |
| AATCTGATGACCCCACACAC+TGG | 0.627045 | 5.2:-65901162 | None:intergenic |
| AGGATCATGAATGGTGGTGG+AGG | 0.635786 | 5.2:+65901282 | MS.gene063635:CDS |
| TTATACAGCAGAAACAACAT+AGG | 0.656465 | 5.2:-65897683 | None:intergenic |
| GATATCTAAACACATCACCA+TGG | 0.657708 | 5.2:-65899820 | None:intergenic |
| GGTAGTTTAGGAATCTCCCT+CGG | 0.664868 | 5.2:-65901053 | None:intergenic |
| ACCCAATACCAATAAAGGTG+AGG | 0.665590 | 5.2:-65900970 | None:intergenic |
| GGACTTGACAGAAGATAGAG+TGG | 0.668974 | 5.2:+65899295 | MS.gene063635:CDS |
| TTCCAAATGATGTGAGAGTG+AGG | 0.670818 | 5.2:-65899402 | None:intergenic |
| TCGAACCAACAAGTATCCGA+GGG | 0.672144 | 5.2:+65901037 | MS.gene063635:CDS |
| ACCCAGTTGATCCACCACAA+AGG | 0.682810 | 5.2:-65901778 | None:intergenic |
| AGTGCCTGTTCCAAGTGCTG+CGG | 0.689872 | 5.2:-65899864 | None:intergenic |
| GAAACAACATAGGATCACAA+TGG | 0.705943 | 5.2:-65897673 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAAAATATGAAAAAATT+GGG | + | chr5.2:65897882-65897901 | MS.gene063635:intron | 10.0% |
| !! | TGAAAAAAATATGAAAAAAT+TGG | + | chr5.2:65897881-65897900 | MS.gene063635:intron | 10.0% |
| !!! | AGATCAAAATATATTTTAAA+AGG | - | chr5.2:65897837-65897856 | None:intergenic | 10.0% |
| !!! | ATTAAATAGTATAATTTTTG+TGG | + | chr5.2:65898477-65898496 | MS.gene063635:intron | 10.0% |
| !!! | GATCAAAATATATTTTAAAA+GGG | - | chr5.2:65897836-65897855 | None:intergenic | 10.0% |
| !!! | TTTTTTTCAAAAGTATAAAT+TGG | - | chr5.2:65897870-65897889 | None:intergenic | 10.0% |
| !! | AAATGACAAGTTATAAAATA+TGG | - | chr5.2:65901736-65901755 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | - | chr5.2:65900105-65900124 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | + | chr5.2:65900104-65900123 | MS.gene063635:intron | 15.0% |
| !! | GAAAAAAATATCAATGTTAT+GGG | + | chr5.2:65901370-65901389 | MS.gene063635:intron | 15.0% |
| !! | TGAAAAAAATATCAATGTTA+TGG | + | chr5.2:65901369-65901388 | MS.gene063635:intron | 15.0% |
| !!! | CATTTTGAAACAATTTTTTT+TGG | - | chr5.2:65899978-65899997 | None:intergenic | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | - | chr5.2:65900081-65900100 | None:intergenic | 15.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | + | chr5.2:65900095-65900114 | MS.gene063635:intron | 20.0% |
| !! | AATGATTAAAAGAAAGAGAA+TGG | - | chr5.2:65900138-65900157 | None:intergenic | 20.0% |
| !! | ACATAACAAAATATTACGAT+AGG | + | chr5.2:65899741-65899760 | MS.gene063635:intron | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | - | chr5.2:65900018-65900037 | None:intergenic | 20.0% |
| !! | AGTTAATAATAGAAAACCAA+TGG | - | chr5.2:65899430-65899449 | None:intergenic | 20.0% |
| !! | ATTTATTTATCTCAGTAGTA+TGG | + | chr5.2:65899540-65899559 | MS.gene063635:intron | 20.0% |
| !! | TAGTTTATTCATCAGAATTT+AGG | + | chr5.2:65901343-65901362 | MS.gene063635:intron | 20.0% |
| !! | TTGAAAACTATTATTAGATC+AGG | - | chr5.2:65901447-65901466 | None:intergenic | 20.0% |
| !!! | AAGACAGTAATAGAAAATTT+TGG | - | chr5.2:65898866-65898885 | None:intergenic | 20.0% |
| !!! | AGACAGTAATAGAAAATTTT+GGG | - | chr5.2:65898865-65898884 | None:intergenic | 20.0% |
| !!! | CAATAAATTTTGGAACTATA+AGG | - | chr5.2:65898910-65898929 | None:intergenic | 20.0% |
| !!! | GTCATTTTCTTAAAAATATG+TGG | - | chr5.2:65901660-65901679 | None:intergenic | 20.0% |
| !!! | TATAAAAAGTAGAGGTATAA+GGG | + | chr5.2:65901597-65901616 | MS.gene063635:intron | 20.0% |
| !!! | TCATTTTTCTACATGATATT+AGG | + | chr5.2:65901750-65901769 | MS.gene063635:intron | 20.0% |
| !!! | TTGTGGTTATTTTCTTAATA+TGG | + | chr5.2:65900937-65900956 | MS.gene063635:CDS | 20.0% |
| !!! | TTTCTGCATTCAATAAATTT+TGG | - | chr5.2:65898920-65898939 | None:intergenic | 20.0% |
| !!! | TTTTCAAAAGTATAAATTGG+AGG | - | chr5.2:65897867-65897886 | None:intergenic | 20.0% |
| ! | AAAAACAACTGGAAAAAGAA+AGG | - | chr5.2:65900716-65900735 | None:intergenic | 25.0% |
| ! | AAGCATTAAAAATCTAACCT+GGG | - | chr5.2:65897798-65897817 | None:intergenic | 25.0% |
| ! | AATGAACAAAATGCTGTATA+TGG | - | chr5.2:65901192-65901211 | None:intergenic | 25.0% |
| ! | ATCAAGAATTTCTTCCTAAA+TGG | + | chr5.2:65898718-65898737 | MS.gene063635:intron | 25.0% |
| ! | ATTACTTTCAATCGTGTTAA+AGG | - | chr5.2:65900739-65900758 | None:intergenic | 25.0% |
| ! | ATTCCTAAAAAGATAAACTG+TGG | - | chr5.2:65899201-65899220 | None:intergenic | 25.0% |
| ! | ATTTCACATATTCTGTCAAA+TGG | + | chr5.2:65899327-65899346 | MS.gene063635:CDS | 25.0% |
| ! | GAACCTAAATAAGTAGTAAA+AGG | - | chr5.2:65900501-65900520 | None:intergenic | 25.0% |
| ! | TATTAACAAAGTAGCCATTT+AGG | - | chr5.2:65898735-65898754 | None:intergenic | 25.0% |
| ! | TCAGTTAAAGATGAATTGTT+CGG | - | chr5.2:65898606-65898625 | None:intergenic | 25.0% |
| ! | TTAGTGCTTCAATAAAATCA+TGG | + | chr5.2:65898034-65898053 | MS.gene063635:intron | 25.0% |
| ! | TTGACAATAAATTATTGCTC+TGG | + | chr5.2:65898334-65898353 | MS.gene063635:intron | 25.0% |
| ! | TTTATTGAATGCAGAAAATG+TGG | + | chr5.2:65898923-65898942 | MS.gene063635:intron | 25.0% |
| ! | TTTATTGTCAAGATAAGCTA+TGG | - | chr5.2:65898325-65898344 | None:intergenic | 25.0% |
| !! | AAAGCATTAAAAATCTAACC+TGG | - | chr5.2:65897799-65897818 | None:intergenic | 25.0% |
| !! | ATAAAAAGTAGAGGTATAAG+GGG | + | chr5.2:65901598-65901617 | MS.gene063635:intron | 25.0% |
| !! | ATCAAGAATTCAAGTTTGTA+AGG | - | chr5.2:65899005-65899024 | None:intergenic | 25.0% |
| !! | ATGCAAACTTCTTTCTTTTT+CGG | + | chr5.2:65901860-65901879 | MS.gene063635:CDS | 25.0% |
| !! | CTATAAAAAGTAGAGGTATA+AGG | + | chr5.2:65901596-65901615 | MS.gene063635:intron | 25.0% |
| !! | GTAATGGAATGAAATCTTAA+TGG | + | chr5.2:65897939-65897958 | MS.gene063635:intron | 25.0% |
| !!! | CTTATACCTCTACTTTTTAT+AGG | - | chr5.2:65901598-65901617 | None:intergenic | 25.0% |
| AAAACTATTTATGCATGCCA+AGG | - | chr5.2:65901423-65901442 | None:intergenic | 30.0% | |
| AAAAGATGTTGACACAAATG+AGG | + | chr5.2:65899175-65899194 | MS.gene063635:CDS | 30.0% | |
| AAGCTGAATGTCAAAAACAA+TGG | - | chr5.2:65900861-65900880 | None:intergenic | 30.0% | |
| AAGTTCCACAAACTAGTAAA+TGG | - | chr5.2:65899712-65899731 | None:intergenic | 30.0% | |
| AATAACCACAATTGTTCCAA+AGG | - | chr5.2:65900928-65900947 | None:intergenic | 30.0% | |
| ACATGATTGAAGGGAAAAAT+TGG | + | chr5.2:65900421-65900440 | MS.gene063635:CDS | 30.0% | |
| ATAACCACAATTGTTCCAAA+GGG | - | chr5.2:65900927-65900946 | None:intergenic | 30.0% | |
| ATATTTATGCTTGCTCTAGT+TGG | + | chr5.2:65900297-65900316 | MS.gene063635:CDS | 30.0% | |
| ATGAAAATAGCTCGAAATTG+TGG | - | chr5.2:65899680-65899699 | None:intergenic | 30.0% | |
| ATGGAATGAAATCTTAATGG+TGG | + | chr5.2:65897942-65897961 | MS.gene063635:intron | 30.0% | |
| CAAATTACGACAGGTAAATT+TGG | - | chr5.2:65898076-65898095 | None:intergenic | 30.0% | |
| CAAATTTACCTGTCGTAATT+TGG | + | chr5.2:65898074-65898093 | MS.gene063635:intron | 30.0% | |
| CAATTGTTGGATGAATTTAG+TGG | + | chr5.2:65901568-65901587 | MS.gene063635:intron | 30.0% | |
| CAGATATTCCATTTGAGAAA+AGG | + | chr5.2:65899357-65899376 | MS.gene063635:CDS | 30.0% | |
| CAGTTAAAGATGAATTGTTC+GGG | - | chr5.2:65898605-65898624 | None:intergenic | 30.0% | |
| CATGATTGAAGGGAAAAATT+GGG | + | chr5.2:65900422-65900441 | MS.gene063635:CDS | 30.0% | |
| CCTTCTATTACATGATTGAA+GGG | + | chr5.2:65900412-65900431 | MS.gene063635:CDS | 30.0% | |
| CTAAATAAGTAGTAAAAGGC+AGG | - | chr5.2:65900497-65900516 | None:intergenic | 30.0% | |
| CTAAGTCATTGGATAAAGAT+CGG | + | chr5.2:65900577-65900596 | MS.gene063635:intron | 30.0% | |
| GAAGAAAAGAAAGAAGATCT+TGG | + | chr5.2:65898945-65898964 | MS.gene063635:CDS | 30.0% | |
| GAGAGATTAGATGAATTAAG+AGG | - | chr5.2:65901549-65901568 | None:intergenic | 30.0% | |
| GGATTACACTTATCAAGTAT+TGG | + | chr5.2:65900781-65900800 | MS.gene063635:intron | 30.0% | |
| GTAGTAGAGTTCAATGAAAA+TGG | - | chr5.2:65901135-65901154 | None:intergenic | 30.0% | |
| TATGGTTTCTTTCTTATGCT+TGG | + | chr5.2:65901902-65901921 | MS.gene063635:CDS | 30.0% | |
| TATTCCATTTGAGAAAAGGT+TGG | + | chr5.2:65899361-65899380 | MS.gene063635:CDS | 30.0% | |
| TCAGATCATCGTTATAAAGA+AGG | + | chr5.2:65897726-65897745 | MS.gene063635:CDS | 30.0% | |
| TCATCTAATCTCTCAATTGT+TGG | + | chr5.2:65901555-65901574 | MS.gene063635:intron | 30.0% | |
| TCCTTCTATTACATGATTGA+AGG | + | chr5.2:65900411-65900430 | MS.gene063635:CDS | 30.0% | |
| TTATACAGCAGAAACAACAT+AGG | - | chr5.2:65897686-65897705 | None:intergenic | 30.0% | |
| TTCATTCCATTACAGAATTC+TGG | - | chr5.2:65897932-65897951 | None:intergenic | 30.0% | |
| ! | ATACCATTAGTACTTTGAGA+AGG | - | chr5.2:65899916-65899935 | None:intergenic | 30.0% |
| ! | CTCTTTTGTGACTATATACT+TGG | + | chr5.2:65900250-65900269 | MS.gene063635:intron | 30.0% |
| ! | CTGCCTTTTACTACTTATTT+AGG | + | chr5.2:65900495-65900514 | MS.gene063635:intron | 30.0% |
| ! | CTTGGTTGGTTAAATCTAAA+TGG | + | chr5.2:65898653-65898672 | MS.gene063635:intron | 30.0% |
| ! | TGTTTTCTATCCATACAACA+GGG | + | chr5.2:65900320-65900339 | MS.gene063635:CDS | 30.0% |
| ! | TTACCTTCTCAAAGTACTAA+TGG | + | chr5.2:65899910-65899929 | MS.gene063635:intron | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | + | chr5.2:65900187-65900206 | MS.gene063635:intron | 30.0% |
| !! | AATCTTAATGGTGGATTAAG+AGG | + | chr5.2:65897951-65897970 | MS.gene063635:intron | 30.0% |
| !! | CTTTTATCTTTGCCATTTGA+TGG | + | chr5.2:65898372-65898391 | MS.gene063635:intron | 30.0% |
| !! | TGCATTTCAGGTGAAAATTT+TGG | + | chr5.2:65900809-65900828 | MS.gene063635:intron | 30.0% |
| !!! | GTGAAAATTTTGGTGTTAAC+TGG | + | chr5.2:65900819-65900838 | MS.gene063635:CDS | 30.0% |
| !!! | TACCTCTACTTTTTATAGGT+CGG | - | chr5.2:65901594-65901613 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | - | chr5.2:65900186-65900205 | None:intergenic | 30.0% |
| AAACGGAGGGAGTAATATAA+AGG | + | chr5.2:65900204-65900223 | MS.gene063635:intron | 35.0% | |
| AAACTAACCTGGTGAACAAA+AGG | - | chr5.2:65898818-65898837 | None:intergenic | 35.0% | |
| AAAGATGCTGACAAGAAAAG+AGG | + | chr5.2:65899052-65899071 | MS.gene063635:CDS | 35.0% | |
| AAATAGCTCGAAATTGTGGT+AGG | - | chr5.2:65899676-65899695 | None:intergenic | 35.0% | |
| AACCTCACCTTTATTGGTAT+TGG | + | chr5.2:65900968-65900987 | MS.gene063635:CDS | 35.0% | |
| AACTAACCTGGTGAACAAAA+GGG | - | chr5.2:65898817-65898836 | None:intergenic | 35.0% | |
| AATATCTGTATGTCTCACTG+TGG | - | chr5.2:65898786-65898805 | None:intergenic | 35.0% | |
| AATGATTTATGCAGTCACTG+CGG | + | chr5.2:65900545-65900564 | MS.gene063635:intron | 35.0% | |
| ACACATAACCAAATTACGAC+AGG | - | chr5.2:65898085-65898104 | None:intergenic | 35.0% | |
| ACCATTCCAGAATTCTGTAA+TGG | + | chr5.2:65897923-65897942 | MS.gene063635:intron | 35.0% | |
| ACCTCACCTTTATTGGTATT+GGG | + | chr5.2:65900969-65900988 | MS.gene063635:CDS | 35.0% | |
| ACTTGTAACCTCACCTTTAT+TGG | + | chr5.2:65900962-65900981 | MS.gene063635:CDS | 35.0% | |
| AGAAGATAGAGTGGTAAATG+TGG | + | chr5.2:65899304-65899323 | MS.gene063635:CDS | 35.0% | |
| AGCACTTGAGTTTAATCACT+TGG | + | chr5.2:65898635-65898654 | MS.gene063635:intron | 35.0% | |
| ATCTAACCTGGGATTATGAA+AGG | - | chr5.2:65897787-65897806 | None:intergenic | 35.0% | |
| CAACTGGAAAAAGAAAGGAA+AGG | - | chr5.2:65900711-65900730 | None:intergenic | 35.0% | |
| CACATCATTTGGAAATCCAT+TGG | + | chr5.2:65899411-65899430 | MS.gene063635:CDS | 35.0% | |
| CATCAGTTTCAAATCTTCCA+AGG | - | chr5.2:65899154-65899173 | None:intergenic | 35.0% | |
| CCCTTCAATCATGTAATAGA+AGG | - | chr5.2:65900415-65900434 | None:intergenic | 35.0% | |
| CGTGTTAAAGGAAAAACAAC+TGG | - | chr5.2:65900727-65900746 | None:intergenic | 35.0% | |
| CTTGAGTTTAATCACTTGGT+TGG | + | chr5.2:65898639-65898658 | MS.gene063635:intron | 35.0% | |
| GAAACAACATAGGATCACAA+TGG | - | chr5.2:65897676-65897695 | None:intergenic | 35.0% | |
| GACATTCAGCTTTCTTAACA+CGG | + | chr5.2:65900869-65900888 | MS.gene063635:CDS | 35.0% | |
| GATATCTAAACACATCACCA+TGG | - | chr5.2:65899823-65899842 | None:intergenic | 35.0% | |
| GATATTAGGTCTTTCCTTTG+TGG | + | chr5.2:65901764-65901783 | MS.gene063635:intron | 35.0% | |
| GCGAACAAAGACTTAAATCT+TGG | - | chr5.2:65899845-65899864 | None:intergenic | 35.0% | |
| GTGGCAGAAAAAAAATGTCA+AGG | - | chr5.2:65898767-65898786 | None:intergenic | 35.0% | |
| TCAACTGGGTTGTTCATATA+TGG | + | chr5.2:65901791-65901810 | MS.gene063635:CDS | 35.0% | |
| TCTAACCTGGGATTATGAAA+GGG | - | chr5.2:65897786-65897805 | None:intergenic | 35.0% | |
| TCTTAGACAGCATAAACAGT+CGG | + | chr5.2:65900457-65900476 | MS.gene063635:intron | 35.0% | |
| TGAATACCATCAAACTAACC+TGG | - | chr5.2:65898829-65898848 | None:intergenic | 35.0% | |
| TTAACTGGTAGTCTATTCTC+TGG | + | chr5.2:65900834-65900853 | MS.gene063635:CDS | 35.0% | |
| TTTCTTATGCTTGGAACTGT+GGG | + | chr5.2:65901911-65901930 | MS.gene063635:CDS | 35.0% | |
| ! | ACTATGATGACTTGCCAATT+TGG | + | chr5.2:65899123-65899142 | MS.gene063635:CDS | 35.0% |
| ! | AGGCCACAGTTTATCTTTTT+AGG | + | chr5.2:65899195-65899214 | MS.gene063635:CDS | 35.0% |
| ! | ATCTTCACCCGAACAATTTT+TGG | - | chr5.2:65898567-65898586 | None:intergenic | 35.0% |
| ! | CCATTTGAGGAAGAGTTTTA+CGG | - | chr5.2:65901085-65901104 | None:intergenic | 35.0% |
| ! | CTAGACCATTTACTAGTTTG+TGG | + | chr5.2:65899704-65899723 | MS.gene063635:intron | 35.0% |
| ! | CTATGATGACTTGCCAATTT+GGG | + | chr5.2:65899124-65899143 | MS.gene063635:CDS | 35.0% |
| ! | CTTTTCTTGTCAGCATCTTT+TGG | - | chr5.2:65899052-65899071 | None:intergenic | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | - | chr5.2:65900056-65900075 | None:intergenic | 35.0% |
| ! | GTATTGGTATGTTGCATTTC+AGG | + | chr5.2:65900797-65900816 | MS.gene063635:intron | 35.0% |
| ! | GTGTTTTCTATCCATACAAC+AGG | + | chr5.2:65900319-65900338 | MS.gene063635:CDS | 35.0% |
| ! | GTTTATGCTGTCTAAGATGA+TGG | - | chr5.2:65900454-65900473 | None:intergenic | 35.0% |
| ! | GTTTTCTATCCATACAACAG+GGG | + | chr5.2:65900321-65900340 | MS.gene063635:CDS | 35.0% |
| ! | TATCTTTGCCATTTGATGGT+AGG | + | chr5.2:65898376-65898395 | MS.gene063635:intron | 35.0% |
| ! | TATGATGACTTGCCAATTTG+GGG | + | chr5.2:65899125-65899144 | MS.gene063635:CDS | 35.0% |
| ! | TCAATGAAAATGGCACTGAA+TGG | - | chr5.2:65901125-65901144 | None:intergenic | 35.0% |
| ! | TCATTGATTGTTGTGAATCC+AGG | - | chr5.2:65900530-65900549 | None:intergenic | 35.0% |
| ! | TCCATTACAGAATTCTGGAA+TGG | - | chr5.2:65897927-65897946 | None:intergenic | 35.0% |
| ! | TGTACCGTTTTATGCAAACA+AGG | + | chr5.2:65897755-65897774 | MS.gene063635:CDS | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | - | chr5.2:65900052-65900071 | None:intergenic | 35.0% |
| ! | TTCTCCAACCTTTTCTCAAA+TGG | - | chr5.2:65899368-65899387 | None:intergenic | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | - | chr5.2:65899952-65899971 | None:intergenic | 35.0% |
| !! | CTTTTGATTGTCACTGCTTT+TGG | + | chr5.2:65901224-65901243 | MS.gene063635:CDS | 35.0% |
| !!! | AATTGGGTTGTGTCATTTTG+AGG | + | chr5.2:65897898-65897917 | MS.gene063635:intron | 35.0% |
| !!! | ATTCAGACATGCTGTTTTGA+AGG | + | chr5.2:65899082-65899101 | MS.gene063635:CDS | 35.0% |
| !!! | GATCTTGGTGAAGTTTTGAA+TGG | + | chr5.2:65898960-65898979 | MS.gene063635:CDS | 35.0% |
| !!! | TTCTTTCTTTTTCGGCTACA+TGG | + | chr5.2:65901868-65901887 | MS.gene063635:CDS | 35.0% |
| AAATGATCCGAATGCTGTTG+TGG | + | chr5.2:65899274-65899293 | MS.gene063635:CDS | 40.0% | |
| AACTCTTCCTCAAATGGCTA+TGG | + | chr5.2:65901088-65901107 | MS.gene063635:CDS | 40.0% | |
| ACCCAATACCAATAAAGGTG+AGG | - | chr5.2:65900973-65900992 | None:intergenic | 40.0% | |
| ACTACATATTTGCCAGTGTG+TGG | + | chr5.2:65901150-65901169 | MS.gene063635:CDS | 40.0% | |
| ATACGGGCCAAAAATTGTTC+GGG | + | chr5.2:65898557-65898576 | MS.gene063635:intron | 40.0% | |
| ATCCCACCCAATACCAATAA+AGG | - | chr5.2:65900978-65900997 | None:intergenic | 40.0% | |
| ATCCTCACTCTCACATCATT+TGG | + | chr5.2:65899400-65899419 | MS.gene063635:CDS | 40.0% | |
| ATTAGGTCTTTCCTTTGTGG+TGG | + | chr5.2:65901767-65901786 | MS.gene063635:intron | 40.0% | |
| CACGATTGAAAGTAATACCG+TGG | + | chr5.2:65900743-65900762 | MS.gene063635:intron | 40.0% | |
| CAGACATATCTGATCTTGCA+TGG | - | chr5.2:65901835-65901854 | None:intergenic | 40.0% | |
| CATGCAAGATCAGATATGTC+TGG | + | chr5.2:65901833-65901852 | MS.gene063635:CDS | 40.0% | |
| CCAAGGTGATTGTGTTTGAA+TGG | - | chr5.2:65901406-65901425 | None:intergenic | 40.0% | |
| CCATTCAAACACAATCACCT+TGG | + | chr5.2:65901403-65901422 | MS.gene063635:intron | 40.0% | |
| CCGTAAAACTCTTCCTCAAA+TGG | + | chr5.2:65901082-65901101 | MS.gene063635:CDS | 40.0% | |
| CTACATATTTGCCAGTGTGT+GGG | + | chr5.2:65901151-65901170 | MS.gene063635:CDS | 40.0% | |
| CTTTCTTATGCTTGGAACTG+TGG | + | chr5.2:65901910-65901929 | MS.gene063635:CDS | 40.0% | |
| GAGAATCATGGTAAGGAATC+CGG | - | chr5.2:65899477-65899496 | None:intergenic | 40.0% | |
| GATACGGGCCAAAAATTGTT+CGG | + | chr5.2:65898556-65898575 | MS.gene063635:intron | 40.0% | |
| GGAAAAGTCAACGACATGTT+TGG | + | chr5.2:65897644-65897663 | MS.gene063635:CDS | 40.0% | |
| GGTCAGTTGATCTAAGTCAT+TGG | + | chr5.2:65900566-65900585 | MS.gene063635:intron | 40.0% | |
| GGTGATTGTGTTTGAATGGA+AGG | - | chr5.2:65901402-65901421 | None:intergenic | 40.0% | |
| GTCATATACGCATTAACGTC+CGG | + | chr5.2:65900366-65900385 | MS.gene063635:CDS | 40.0% | |
| GTTACTGTTCTTCTCTTGAC+CGG | + | chr5.2:65899455-65899474 | MS.gene063635:CDS | 40.0% | |
| TACATATTTGCCAGTGTGTG+GGG | + | chr5.2:65901152-65901171 | MS.gene063635:CDS | 40.0% | |
| TAGAGTTTGGCCAAGAGATA+CGG | + | chr5.2:65898540-65898559 | MS.gene063635:intron | 40.0% | |
| TAGGTTTACACCAGATGAAG+AGG | + | chr5.2:65899760-65899779 | MS.gene063635:intron | 40.0% | |
| TGGCCAAACTCTAGATTATG+AGG | - | chr5.2:65898533-65898552 | None:intergenic | 40.0% | |
| TTACGGTACCAAGGTAGTTT+AGG | - | chr5.2:65901068-65901087 | None:intergenic | 40.0% | |
| TTCCAAATGATGTGAGAGTG+AGG | - | chr5.2:65899405-65899424 | None:intergenic | 40.0% | |
| TTGCTCTGGTGTATCTCATT+TGG | + | chr5.2:65898348-65898367 | MS.gene063635:intron | 40.0% | |
| ! | AAACTTTTGGCCATGCTAGA+TGG | + | chr5.2:65901485-65901504 | MS.gene063635:intron | 40.0% |
| ! | AAGGTGCTTGAAACTCTGAT+TGG | - | chr5.2:65901016-65901035 | None:intergenic | 40.0% |
| ! | ACCGTTTTATGCAAACAAGG+TGG | + | chr5.2:65897758-65897777 | MS.gene063635:CDS | 40.0% |
| ! | ACTGGATGGAAGTATATCCA+TGG | + | chr5.2:65899803-65899822 | MS.gene063635:CDS | 40.0% |
| ! | ATCTTTTGGCAAATGCTCTC+AGG | - | chr5.2:65899038-65899057 | None:intergenic | 40.0% |
| ! | CACCTTTATTGGTATTGGGT+GGG | + | chr5.2:65900973-65900992 | MS.gene063635:CDS | 40.0% |
| ! | CACGTGATGCTACAAACTTT+TGG | + | chr5.2:65901472-65901491 | MS.gene063635:intron | 40.0% |
| ! | CCCACCTTGTTTGCATAAAA+CGG | - | chr5.2:65897762-65897781 | None:intergenic | 40.0% |
| ! | CCGTTTTATGCAAACAAGGT+GGG | + | chr5.2:65897759-65897778 | MS.gene063635:CDS | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | - | chr5.2:65900053-65900072 | None:intergenic | 40.0% |
| ! | TACATGGCTTGCATTTGCTA+TGG | + | chr5.2:65901884-65901903 | MS.gene063635:CDS | 40.0% |
| ! | TCACCTTTATTGGTATTGGG+TGG | + | chr5.2:65900972-65900991 | MS.gene063635:CDS | 40.0% |
| ! | TTATTTAGGTTCCTCGAACC+TGG | + | chr5.2:65900509-65900528 | MS.gene063635:intron | 40.0% |
| !! | ACTACCCTTTGGAACAATTG+TGG | + | chr5.2:65900920-65900939 | MS.gene063635:CDS | 40.0% |
| !! | AGTAAAAGGCAGGTATTGAG+TGG | - | chr5.2:65900487-65900506 | None:intergenic | 40.0% |
| !! | ATACTTTCAACTTGCTGCTG+AGG | + | chr5.2:65901262-65901281 | MS.gene063635:CDS | 40.0% |
| !! | GAGCACATTTGATCGCTTTT+TGG | - | chr5.2:65899610-65899629 | None:intergenic | 40.0% |
| !! | TGAAAGTGCCTACCATCAAA+TGG | - | chr5.2:65898387-65898406 | None:intergenic | 40.0% |
| !! | TGTTCACCAGGTTAGTTTGA+TGG | + | chr5.2:65898820-65898839 | MS.gene063635:intron | 40.0% |
| !!! | AATTTTTGGCCCGTATCTCT+TGG | - | chr5.2:65898553-65898572 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr5.2:65900191-65900210 | MS.gene063635:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr5.2:65900210-65900191 | None:intergenic | 40.0% |
| !!! | TGTCACTGCTTTTGGTAATG+TGG | + | chr5.2:65901232-65901251 | MS.gene063635:CDS | 40.0% |
| AACAAAGCTCCCCTGTTGTA+TGG | - | chr5.2:65900333-65900352 | None:intergenic | 45.0% | |
| AAGTACGCGCATGAGAATCA+TGG | - | chr5.2:65899489-65899508 | None:intergenic | 45.0% | |
| AATCCAGCCATAGCCATTTG+AGG | - | chr5.2:65901098-65901117 | None:intergenic | 45.0% | |
| AATCTCCCTCGGATACTTGT+TGG | - | chr5.2:65901045-65901064 | None:intergenic | 45.0% | |
| ACTTCCATCCAGTCTCTTCT+TGG | - | chr5.2:65899796-65899815 | None:intergenic | 45.0% | |
| AGAGTTTGGCCAAGAGATAC+GGG | + | chr5.2:65898541-65898560 | MS.gene063635:intron | 45.0% | |
| ATGACCAAGAAGAGACTGGA+TGG | + | chr5.2:65899789-65899808 | MS.gene063635:CDS | 45.0% | |
| CACATGTATCAGTGTTGTGC+TGG | - | chr5.2:65898226-65898245 | None:intergenic | 45.0% | |
| CCACTCAGTTTCTCTTTCCA+CGG | - | chr5.2:65900763-65900782 | None:intergenic | 45.0% | |
| CTCACACAAAAAGTGACACG+TGG | - | chr5.2:65898292-65898311 | None:intergenic | 45.0% | |
| CTTCCAAGGAAACCCCAAAT+TGG | - | chr5.2:65899140-65899159 | None:intergenic | 45.0% | |
| GAAGGAAGCTGCAGAATAAC+CGG | - | chr5.2:65900397-65900416 | None:intergenic | 45.0% | |
| GAATTAAGAGGACCGACCTT+TGG | - | chr5.2:65901537-65901556 | None:intergenic | 45.0% | |
| GCGATCAAATGTGCTCAATG+TGG | + | chr5.2:65899614-65899633 | MS.gene063635:intron | 45.0% | |
| GGACTTGACAGAAGATAGAG+TGG | + | chr5.2:65899295-65899314 | MS.gene063635:CDS | 45.0% | |
| GGCCGACCTATAAAAAGTAG+AGG | + | chr5.2:65901589-65901608 | MS.gene063635:intron | 45.0% | |
| GGGAGATTCCTAAACTACCT+TGG | + | chr5.2:65901057-65901076 | MS.gene063635:CDS | 45.0% | |
| GGTAGTTTAGGAATCTCCCT+CGG | - | chr5.2:65901056-65901075 | None:intergenic | 45.0% | |
| GTCAAGTCCACAACAGCATT+CGG | - | chr5.2:65899284-65899303 | None:intergenic | 45.0% | |
| TAGTGCTGCAGTGGAGTTAT+AGG | - | chr5.2:65900904-65900923 | None:intergenic | 45.0% | |
| TCATCAAGTGCCTCTTCATC+TGG | - | chr5.2:65899773-65899792 | None:intergenic | 45.0% | |
| TCGAACCAACAAGTATCCGA+GGG | + | chr5.2:65901037-65901056 | MS.gene063635:CDS | 45.0% | |
| TGGTAGGAGCTGCAATGTAA+AGG | - | chr5.2:65899660-65899679 | None:intergenic | 45.0% | |
| TTGCTGCTGAGGATCATGAA+TGG | + | chr5.2:65901273-65901292 | MS.gene063635:CDS | 45.0% | |
| TTGTTGTGAATCCAGGTTCG+AGG | - | chr5.2:65900523-65900542 | None:intergenic | 45.0% | |
| ! | CTTGATGACCAAGAAGAGAC+TGG | + | chr5.2:65899785-65899804 | MS.gene063635:CDS | 45.0% |
| ! | GATCTTCCCTTTTGTTCACC+AGG | + | chr5.2:65898808-65898827 | MS.gene063635:CDS | 45.0% |
| ! | GGAAGAGTTTTACGGTACCA+AGG | - | chr5.2:65901077-65901096 | None:intergenic | 45.0% |
| ! | GGGCCTCATAATCTAGAGTT+TGG | + | chr5.2:65898527-65898546 | MS.gene063635:intron | 45.0% |
| ! | TATCAGTGTTGTGCTGGTGT+CGG | - | chr5.2:65898220-65898239 | None:intergenic | 45.0% |
| ! | TTGCCAATTTGGGGTTTCCT+TGG | + | chr5.2:65899134-65899153 | MS.gene063635:CDS | 45.0% |
| !! | GGATACTTGTTGGTTCGACA+AGG | - | chr5.2:65901035-65901054 | None:intergenic | 45.0% |
| !! | TCCTTTGTGGTGGATCAACT+GGG | + | chr5.2:65901777-65901796 | MS.gene063635:CDS | 45.0% |
| !! | TGTAGCACTGACACTTCTGA+TGG | + | chr5.2:65898174-65898193 | MS.gene063635:intron | 45.0% |
| !! | TTCCTTTGTGGTGGATCAAC+TGG | + | chr5.2:65901776-65901795 | MS.gene063635:CDS | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr5.2:65900190-65900209 | MS.gene063635:intron | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr5.2:65900209-65900190 | None:intergenic | 45.0% |
| AATCTGATGACCCCACACAC+TGG | - | chr5.2:65901165-65901184 | None:intergenic | 50.0% | |
| ACCCAGTTGATCCACCACAA+AGG | - | chr5.2:65901781-65901800 | None:intergenic | 50.0% | |
| CCATTCCTCCGGAAATTGGA+GGG | - | chr5.2:65898509-65898528 | None:intergenic | 50.0% | |
| CCGTGGAAAGAGAAACTGAG+TGG | + | chr5.2:65900760-65900779 | MS.gene063635:intron | 50.0% | |
| CCTCCAATTTCCGGAGGAAT+GGG | + | chr5.2:65898507-65898526 | MS.gene063635:intron | 50.0% | |
| CGCGCATGAGAATCATGGTA+AGG | - | chr5.2:65899484-65899503 | None:intergenic | 50.0% | |
| CTGAGGATCATGAATGGTGG+TGG | + | chr5.2:65901279-65901298 | MS.gene063635:CDS | 50.0% | |
| CTGCTGAGGATCATGAATGG+TGG | + | chr5.2:65901276-65901295 | MS.gene063635:CDS | 50.0% | |
| CTTCCTCAAATGGCTATGGC+TGG | + | chr5.2:65901092-65901111 | MS.gene063635:CDS | 50.0% | |
| GAATTGTTCGGGAGAACCAG+AGG | - | chr5.2:65898594-65898613 | None:intergenic | 50.0% | |
| GATTATGAGGCCCATTCCTC+CGG | - | chr5.2:65898520-65898539 | None:intergenic | 50.0% | |
| GGATCGAGATCCATCTAGCA+TGG | - | chr5.2:65901498-65901517 | None:intergenic | 50.0% | |
| GTCGAACCAACAAGTATCCG+AGG | + | chr5.2:65901036-65901055 | MS.gene063635:CDS | 50.0% | |
| TCGGGTGAAGATTTGACCTC+TGG | + | chr5.2:65898575-65898594 | MS.gene063635:intron | 50.0% | |
| TGCAGAATAACCGGCAATGC+CGG | - | chr5.2:65900388-65900407 | None:intergenic | 50.0% | |
| TGGGACCCTTTCATAATCCC+AGG | + | chr5.2:65897778-65897797 | MS.gene063635:CDS | 50.0% | |
| ! | TTGGTATTGGGTGGGATTGC+TGG | + | chr5.2:65900981-65901000 | MS.gene063635:CDS | 50.0% |
| !! | AGGATCATGAATGGTGGTGG+AGG | + | chr5.2:65901282-65901301 | MS.gene063635:CDS | 50.0% |
| !! | GGGAGCTTTGTTTACTGCAC+TGG | + | chr5.2:65900341-65900360 | MS.gene063635:CDS | 50.0% |
| AGGCCCATTCCTCCGGAAAT+TGG | - | chr5.2:65898513-65898532 | None:intergenic | 55.0% | |
| CCCATTCCTCCGGAAATTGG+AGG | - | chr5.2:65898510-65898529 | None:intergenic | 55.0% | |
| CCCTCCAATTTCCGGAGGAA+TGG | + | chr5.2:65898506-65898525 | MS.gene063635:intron | 55.0% | |
| CTCCGGAAATTGGAGGGTTC+AGG | - | chr5.2:65898503-65898522 | None:intergenic | 55.0% | |
| CTGAACCCTCCAATTTCCGG+AGG | + | chr5.2:65898501-65898520 | MS.gene063635:intron | 55.0% | |
| GCATTAACGTCCGGCATTGC+CGG | + | chr5.2:65900375-65900394 | MS.gene063635:CDS | 55.0% | |
| GGCCTGAACCCTCCAATTTC+CGG | + | chr5.2:65898498-65898517 | MS.gene063635:intron | 55.0% | |
| TCCAAAGGGTAGTGCTGCAG+TGG | - | chr5.2:65900913-65900932 | None:intergenic | 55.0% | |
| TCCACTGCAGCACTACCCTT+TGG | + | chr5.2:65900909-65900928 | MS.gene063635:CDS | 55.0% | |
| TCTTCCGCATCTGCAGCCAA+AGG | + | chr5.2:65901518-65901537 | MS.gene063635:intron | 55.0% | |
| TCTTTGTTCGCCGCAGCACT+TGG | + | chr5.2:65899854-65899873 | MS.gene063635:CDS | 55.0% | |
| TTTGGCTGCAGATGCGGAAG+AGG | - | chr5.2:65901519-65901538 | None:intergenic | 55.0% | |
| ! | AGTGCCTGTTCCAAGTGCTG+CGG | - | chr5.2:65899867-65899886 | None:intergenic | 55.0% |
| ! | GTTGTGCTGGTGTCGGACAT+CGG | - | chr5.2:65898213-65898232 | None:intergenic | 55.0% |
| CCGACCTTTGGCTGCAGATG+CGG | - | chr5.2:65901525-65901544 | None:intergenic | 60.0% | |
| CCGCATCTGCAGCCAAAGGT+CGG | + | chr5.2:65901522-65901541 | MS.gene063635:intron | 60.0% | |
| TTCGCCGCAGCACTTGGAAC+AGG | + | chr5.2:65899860-65899879 | MS.gene063635:CDS | 60.0% | |
| ! | CTGGTGTCGGACATCGGACT+CGG | - | chr5.2:65898207-65898226 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 65897642 | 65901991 | 65897642 | ID=MS.gene063635 |
| chr5.2 | mRNA | 65897642 | 65901991 | 65897642 | ID=MS.gene063635.t1;Parent=MS.gene063635 |
| chr5.2 | exon | 65897642 | 65897799 | 65897642 | ID=MS.gene063635.t1.exon1;Parent=MS.gene063635.t1 |
| chr5.2 | CDS | 65897642 | 65897799 | 65897642 | ID=cds.MS.gene063635.t1;Parent=MS.gene063635.t1 |
| chr5.2 | exon | 65898789 | 65898829 | 65898789 | ID=MS.gene063635.t1.exon2;Parent=MS.gene063635.t1 |
| chr5.2 | CDS | 65898789 | 65898829 | 65898789 | ID=cds.MS.gene063635.t1;Parent=MS.gene063635.t1 |
| chr5.2 | exon | 65898937 | 65899525 | 65898937 | ID=MS.gene063635.t1.exon3;Parent=MS.gene063635.t1 |
| chr5.2 | CDS | 65898937 | 65899525 | 65898937 | ID=cds.MS.gene063635.t1;Parent=MS.gene063635.t1 |
| chr5.2 | exon | 65899763 | 65899900 | 65899763 | ID=MS.gene063635.t1.exon4;Parent=MS.gene063635.t1 |
| chr5.2 | CDS | 65899763 | 65899900 | 65899763 | ID=cds.MS.gene063635.t1;Parent=MS.gene063635.t1 |
| chr5.2 | exon | 65900287 | 65900443 | 65900287 | ID=MS.gene063635.t1.exon5;Parent=MS.gene063635.t1 |
| chr5.2 | CDS | 65900287 | 65900443 | 65900287 | ID=cds.MS.gene063635.t1;Parent=MS.gene063635.t1 |
| chr5.2 | exon | 65900819 | 65901303 | 65900819 | ID=MS.gene063635.t1.exon6;Parent=MS.gene063635.t1 |
| chr5.2 | CDS | 65900819 | 65901303 | 65900819 | ID=cds.MS.gene063635.t1;Parent=MS.gene063635.t1 |
| chr5.2 | exon | 65901772 | 65901991 | 65901772 | ID=MS.gene063635.t1.exon7;Parent=MS.gene063635.t1 |
| chr5.2 | CDS | 65901772 | 65901991 | 65901772 | ID=cds.MS.gene063635.t1;Parent=MS.gene063635.t1 |
| Gene Sequence |
| Protein sequence |
