AlfalfaGEDB | MS.gene066846

M. sativa cultivar XinJiangDaYe / MS.gene066846

KEGG: -
GO: GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016166 GO:0016491 GO:0016627 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046148 GO:0055114 GO:0071704 GO:1901576
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066846.t1	XP_024633627.1	98.5	526	8	0	1	526	57	582	5.30E-307	1062.8

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066846.t1	P28553	91.7	516	43	0	11	526	55	570	2.8e-288	991.9

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066846.t1	A0A396IX01	98.5	526	8	0	1	526	57	582	3.8e-307	1062.8

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene066846	0.813923	2.00E-51	-1.69E-46
MS.gene049257	MS.gene066846	0.846839	1.69E-59	-1.69E-46
MS.gene049609	MS.gene066846	0.810014	1.42E-50	-1.69E-46
MS.gene050315	MS.gene066846	0.825537	4.44E-54	-1.69E-46
MS.gene050507	MS.gene066846	0.831289	1.82E-55	-1.69E-46
MS.gene050593	MS.gene066846	0.80121	1.00E-48	-1.69E-46
MS.gene050625	MS.gene066846	0.827554	1.47E-54	-1.69E-46
MS.gene050670	MS.gene066846	0.864828	9.18E-65	-1.69E-46
MS.gene050747	MS.gene066846	0.843412	1.42E-58	-1.69E-46
MS.gene05081	MS.gene066846	0.83154	1.58E-55	-1.69E-46

Showing 1 to 10 of 81 entries

Previous1 2 3 4 5…9Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 130 sgRNAs with CRISPR-Local

Find 389 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAGCTCCAACATAGAC+TGG	0.564256	3.1:+64978427	None:intergenic
AAACCAGTCTATGTTGGAGC+TGG	0.540788	3.1:-64978430	MS.gene066846:CDS
AAATATTTAGCTTCTATGGA+AGG	0.551139	3.1:-64978042	MS.gene066846:CDS
AACGGAGATGGAAGGACTTC+GGG	0.360693	3.1:+64981906	None:intergenic
AACTTACCATTTAACGGAGA+TGG	0.472864	3.1:+64981894	None:intergenic
AAGAAAACCTGCTAAAGAGA+AGG	0.606943	3.1:+64979017	None:intergenic
AAGAGATGTTCTAGGTGGAA+AGG	0.566226	3.1:-64983007	MS.gene066846:intron
AAGATGGACTTCACCGCCCA+AGG	0.583196	3.1:+64979860	None:intergenic
AAGCACGAAAGGTAGAAGAC+AGG	0.585606	3.1:+64983867	None:intergenic
AAGGTTGTTATTGCTGGTGC+AGG	0.509252	3.1:-64983821	MS.gene066846:intron

Showing 1 to 10 of 130 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAACTATTACAACCAGTCAA+AGG	+	chr3.1:64982221-64982240	None:intergenic	30.0%
AAAGAAATAATCCAACTCAG+TGG	+	chr3.1:64983300-64983319	None:intergenic	30.0%
AAGAAATAATCCAACTCAGT+GGG	+	chr3.1:64983299-64983318	None:intergenic	30.0%
AAGTATATTACTGCTTCAGT+TGG	+	chr3.1:64982323-64982342	None:intergenic	30.0%
AATGGAAAAAGGTTTACTGA+AGG	+	chr3.1:64978964-64978983	None:intergenic	30.0%
AATGTCAAAACCAGGAATAT+GGG	-	chr3.1:64980385-64980404	MS.gene066846:intron	30.0%
ATAGAAGGTTTCTATTTAGC+TGG	-	chr3.1:64983463-64983482	MS.gene066846:intron	30.0%
ATATGGTGTTTGAACTCATT+TGG	-	chr3.1:64983780-64983799	MS.gene066846:intron	30.0%
ATGTGTTCTTTATGCATGAA+AGG	-	chr3.1:64978046-64978065	MS.gene066846:CDS	30.0%
ATTGCATTGAAAGTTCATCA+GGG	+	chr3.1:64981353-64981372	None:intergenic	30.0%

Showing 1 to 10 of 389 entries

Previous1 2 3 4 5…39Next

Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	64977556	64984010	64977556	ID=MS.gene066846
chr3.1	mRNA	64977556	64984010	64977556	ID=MS.gene066846.t1;Parent=MS.gene066846
chr3.1	exon	64983822	64984010	64983822	ID=MS.gene066846.t1.exon1;Parent=MS.gene066846.t1
chr3.1	CDS	64983822	64984010	64983822	ID=cds.MS.gene066846.t1;Parent=MS.gene066846.t1
chr3.1	exon	64983008	64983096	64983008	ID=MS.gene066846.t1.exon2;Parent=MS.gene066846.t1
chr3.1	CDS	64983008	64983096	64983008	ID=cds.MS.gene066846.t1;Parent=MS.gene066846.t1
chr3.1	exon	64982668	64982725	64982668	ID=MS.gene066846.t1.exon3;Parent=MS.gene066846.t1
chr3.1	CDS	64982668	64982725	64982668	ID=cds.MS.gene066846.t1;Parent=MS.gene066846.t1
chr3.1	exon	64981901	64982056	64981901	ID=MS.gene066846.t1.exon4;Parent=MS.gene066846.t1
chr3.1	CDS	64981901	64982056	64981901	ID=cds.MS.gene066846.t1;Parent=MS.gene066846.t1
chr3.1	exon	64981019	64981167	64981019	ID=MS.gene066846.t1.exon5;Parent=MS.gene066846.t1
chr3.1	CDS	64981019	64981167	64981019	ID=cds.MS.gene066846.t1;Parent=MS.gene066846.t1
chr3.1	exon	64980162	64980281	64980162	ID=MS.gene066846.t1.exon6;Parent=MS.gene066846.t1
chr3.1	CDS	64980162	64980281	64980162	ID=cds.MS.gene066846.t1;Parent=MS.gene066846.t1
chr3.1	exon	64979751	64979964	64979751	ID=MS.gene066846.t1.exon7;Parent=MS.gene066846.t1
chr3.1	CDS	64979751	64979964	64979751	ID=cds.MS.gene066846.t1;Parent=MS.gene066846.t1
chr3.1	exon	64979551	64979653	64979551	ID=MS.gene066846.t1.exon8;Parent=MS.gene066846.t1
chr3.1	CDS	64979551	64979653	64979551	ID=cds.MS.gene066846.t1;Parent=MS.gene066846.t1
chr3.1	exon	64979025	64979072	64979025	ID=MS.gene066846.t1.exon9;Parent=MS.gene066846.t1
chr3.1	CDS	64979025	64979072	64979025	ID=cds.MS.gene066846.t1;Parent=MS.gene066846.t1
chr3.1	exon	64978758	64978803	64978758	ID=MS.gene066846.t1.exon10;Parent=MS.gene066846.t1
chr3.1	CDS	64978758	64978803	64978758	ID=cds.MS.gene066846.t1;Parent=MS.gene066846.t1
chr3.1	exon	64978279	64978466	64978279	ID=MS.gene066846.t1.exon11;Parent=MS.gene066846.t1
chr3.1	CDS	64978279	64978466	64978279	ID=cds.MS.gene066846.t1;Parent=MS.gene066846.t1
chr3.1	exon	64977999	64978161	64977999	ID=MS.gene066846.t1.exon12;Parent=MS.gene066846.t1
chr3.1	CDS	64977999	64978161	64977999	ID=cds.MS.gene066846.t1;Parent=MS.gene066846.t1
chr3.1	exon	64977556	64977615	64977556	ID=MS.gene066846.t1.exon13;Parent=MS.gene066846.t1
chr3.1	CDS	64977556	64977615	64977556	ID=cds.MS.gene066846.t1;Parent=MS.gene066846.t1

Gene Sequence

>MS.gene066846

CTTCAACTCGTTCTGCTAAGTGTAACAGGTTAAGGAACCATGGTTCTCCTTTGAAGGTTGTTTGCATTGATTATCCACGTCCTGAGCTTGATGATACTGTTAATTTCATTGAAGCTTCTTACCTGTCTTCTACCTTTCGTGCTTCTCCTCGTCCTACTAAACCTTTGAAGGTTGTTATTGCTGGTGCAGGTAACATATACCCATCTTGTTTGTTGTTTTTGTTCTATTGGGTGTTTTTTAATTAGTACTTGTAGTTGACTAATTGACTTGAATTGAGTCTTGTCTTCTAATGGTGGTAGAAACTATGAATCATCGAACACAAAACACGACACTGACACGTTGACATCGGTAGTAATCTGAAAAAAATTACTTAGTTGATTGTAATCACTTCAGACACGAACACATGTTGGACACCAGGTACTCCTTTTGATGAGAAGTGTCAGTGCTACAAAGGGGGAAAGTGAGAATGGGATAGGGTTGTTTTAGGCAGATGTGTTCTTTATGCATGAAAGGAGTTTGAAGTTCCTTTCTTATGTATAAGCTGTTTTCATAAACTATCGAAGAGTGTTTATGGAAATAAGATGAAAATAGCTTATGAACATGTTATAAGTTGTTTTCATTAGCTATGCCGAACAGTCACACAATTTATTATGTTAGTAGATAAAGTTGAACAACTCAAATAAGTCAATCCAACAATGAGTGAAGGCTTTATCACATTGTGTGAGATCCTGTGCCGATAAAGAAAAAAAATATGGAATTTATTGTAGCATTTTCAGTTTTTAATATAATTTCAAATGAAAAGGTACCATAATATCATGTTGACTATTTACGCAAAAATTGATTATAATACTTGTGTGCGAGCTTTGGCCTCTTTCTTTTTCTTTTGGATTGATTTGATTTTCAAATTATCCCAGGACTGGCTGGCTTGTCAACTGCAAAGTATTTGGCAGATGCTGGTCACAAGCCTATATTGCTGGAGGCAAGAGATGTTCTAGGTGGAAAGGTTTTCCGACTAATTTAATCTCATTTGTCAATAATCTTCGATTTTGCTCTTCTTGGTTTTATCATTTCAGCTTGCTATTTAGTTAAATAAGAAACCTGTTCTTATCCGACTGTTCCTAAGTAATTTAATAATTCAAGTTTTTGTTTTAAGAATTAATTTTCCGGCTCTTTGGAGTTAATGCTGAACATCTTCATCAAGTTTTTGTGAATATTGAACAGTACGTGAAGTTATTTATTGTAACTCAATTTTAAATGTTTTCATGCTATTTTCTCGTTTTCTAAGATTGCTGCATGGAAAGATGAAGATGGAGACTGGTATGAGACGGGCCTACATATATTCTGTAAGTTCATACAATCTCAAGCTTAACTTTTTCTACTACACATTTGTCAATTTAATAACACACCTTCAGTAAACCTTTTTCCATTGCTAAGAGAGATAAAAAAAGTGAAACTGGAGGATTACAAATTCTCCTTAAGCTGCGAAAGACACCACAGGAGAAAGAAAGTATAGAGATAAAAAGATAATGACATAACAAAACCATTCTTTGACCTTCTACTAGTGTATGCTCTCGGTAGTTTTGGTCTTTGACACAATACCAACAATCAAGTCCAATGCCTTTTTCCATCATTGGGATTTTGATCCTTGCTGCATCACACATCCAATTAAGAACTAAATTTCAGAAAGAAGGCATGGGTTAACCTGTGCTCTGTCCAAGCTTCAATCTCAAAAGACTTTTGCATGAATGGGAAATTTGGTCTTCTCCTAACAGTGCTTGTAGACCAGTTAGCCCTTGGCACATGTATTGAACTATTTTGATATTTCTTTTTAGTTTTTCATTCTAAATAAATGATTTACTGGAACTCAATGCTAGTATTTAATCAATATGGTCATTTTAATTATTTTAATTCTTATTTATAATTATTCTGACTTTACGTTTTCTTTTTCCCAAAGTTGGGGCTTACCCTAATGTGCAGAACCTATTTGGAGAACTCGGTATTAATGATCGGTTACAATGGAAGGAGCATTCTATGATCTTTGCTATGCCAAGCAAGCCTGGAGAGTTTAGTCGATTTGATTTTCCCGAAGTCCTTCCATCTCCGTTAAATGGTAAGTTGTAAGACTTTACGTATGTGGTTGCATATTCGTAAAACTACCTGAAGTTGAAAGTTTCTTTAATCCACATGAAATACCTTCTATTTTTTAAACACGTACAGGTACAGTATTCGAATTTGCATGTCTACTGCAAAATGTATACTACATTTATAGTATGTGGCAATTTTTGTGCCTATGTGATGGGCATTGGGCAGTGCCTCAAAAACCCGAGTTCAGATTAAGGAATAACCCTTGGAAGTTTTAACACAGCATGCCTGATAAAATTTGTTTTTGAATATATTTCAATGCATTTTGAAGCTATAGCGGTAGTCTTTTAGTGTAAATGAAGAAAAAGGAATAGATTGATATGATGTGCCATTTAAAATTTTAGTATAACTTCTTCAGAAAAAAAAATTAGTATAACTAAATTGCTCTATGGTATGATCAAGATATTACAGCTTACTAGATCTCTTTTTCACATATTCTAACACATTTGATAATCATTGAAACAAGATGTGATAAATTGGTTCAATTTTATGTGAAATGAAAACACAAATGGGGATCAAGGGTTTTGTTGTTTAAAAGTGATCTCGATATTCTTTGACGCTCTTATTTTGCTTCTTTTTCTTTCTTCACTAATCTGGTTTGCATGGCTGGTATGTACTTCTATCTTTTAAAAAGAACCAACGTATTTTCTTACTTAATGTAAACATGTTTACAAGTTGCATGCTGTGAATGTCAAAACCAGGAATATGGGCAATCTTGAGGAATAATGAGATGCTGACCTGGCCAGAGAAAATCAAATTTGCAATTGGACTTCTTCCAGCTATGCTTGGTGGACAGGCGTATGTTGAGGCTCAAGATGGTATTTCTGTCAAAGAATGGATGAGAAAACAGGTATGGCAGTTGTCTTGATTCCATAACTGTGGCAGTTCATCAATAGATTTATATTCCTTGGCTATATCACCAGTCAAGGTCATGGCCTGTCGTGACTTGAAAATTTCAGATAGAAATCTTGTCAGTTTGTAAATGGAGGGGAGTCCTAATCATCTTAGTGATACTGATAAGTATTCTGCGATGAGTTGTTTTAGGATGGATTTCCAGTGACTTGATGACGATAATGAGTCCTTTTATCATTAAAATTCAAATTATCTCAGATGATGCTCCATATTACTTTATTTTCATGCTACTTATAGATATCAACTCGAAAACAAACTATGATATTATATTTGTATTAAATTATGCACTAAAATTCTGGTGCTGTTTTTTCTCAAAAAAAAAAAAAAAACAAAATTTAATGTACTAAAAGATCTTTTTGTAAAGAAAGAGTTTCCTTACTTCCAAGTGTGGGAGAATATTAAATTGTGTGCTTTGTTCTTGTATTTTGTTTTATCTCTTATTCCAATGCCGTCTGTCCTAATAATTTTCACTGATGGGAAATAAAGAAAGGATATCTGTAGTTTTTGTTGTTATATTAAATTTTTACTTTGAGAATAAATTTTATCAACCTTGGGTTGATTTCGCCTGAACATATTGCAATCTTCTAATGGTCTACTTATTGCAAATAGTCTGGGAATAGATTATTAATAAAAAAAAAAGTTTGAGTATAACACATTGTTTATTCCATATTATAGGGCATTCCTGAACGTGTAACTGATGAAGTGTTCATAGCAATGTCAAAGGCCCTAAACTTCATCAACCCTGATGAACTTTCAATGCAATGTATTTTGATTGCTTTAAACCGATTTCTTCAGGTGCGATCATTTCTGTTTCTTAAAAACTATGCTGCCTACATAAGTGTTTGTTTAACAAGGCCTTTTCATTCATATTACATTTGAACATAATCAGATTATCAATAAACTCATTCTATTTCAAATCCAGTGTTTGTGAAACATAGGATCAAGTGCTTCTTCTTCTCGACTAACTATTATATTATTGAATTCTTCAATAGGAGAAGCATGGTTCTAAGATGGCCTTTTTGGACGGAAACCCCCCTGAAAGACTTTGTATGCCAATTGTTGATCATATTAAGTCCTTGGGCGGTGAAGTCCATCTTAATTCACGCATTAAAAATATTGAGCTAAACGATGATAACACAGTGAAAAGCTTTTTACTAACTAATGGGAAGGTGATTGAAGGGGATGCTTATGTGTCTGCAGCACCAGGTATGTTTATAAGACTTCCACGCTATTAATTAATTGTTCATTGGAATTCTTGGTCTCCATTTCTTCACAATTTTGAGGATTTCCTCCCTTAAAACAGTGGATATTCTGAAGCTTCTTCTTCCTGAGAACTGGAAAGGGGTTCCTTATTTCCAGAGATTGGAGAAATTAGTTGGAGTTCCAGTCATAAATGTTCACATATGGTAAGTAATGGCTTTTGATGTTGAAAACTAAGTCTGCGCAAAAGTTATACTCCAATTTTTTGTTAAATATTTTGGTCTTTATTATTTTATTTTTCTATCTAATATATAAACTGTCATGTTTACTGAAAAATTTGAATAGAAATCTGCGGTTGTGGTATAGGTCTTAAATTTTATTAATGACAAAATGTGTGAGTTATATTATCCTTTGACTGGTTGTAATAGTTTTGGTAAATGAAAAAAAAAAATGAAAAAAATAAGATTGTTGTGAAAAAACCTATTTCAATTTGTAAAGTAATCGCTGCCACCAACTGAAGCAGTAATATACTTCTGTTATTGTTAAAAAAGAATTCTCGTTATATTGATGTATCTTCTCCAAATTCAGAATAACAACGAAATTAGTTTGTAATATTTGTCAGTGAGGATTATATTATCAGCTCCACCAGTATGCTGACATACTATTTACATATCAAATTTGCAGGTTTGACAGAAAACTGAAGAACACGTATGATCACCTTCTCTTTAGCAGGTTTTCTTCGCACTTTGAAACACTTGTGATGCCTAGAAGGGATAAAAGATAGAGGATTTTTATTGTGTTGTGTATGTTGCAAGTTTTAGCTTTGAAGATCACTTCTTTTTTGTTGTGTGAAATGGACCTCTTTCCTTCTTTGCATTCCGGATAGCACTTTTGAATTATAAATACATCTTTTCATCAACTCACATCTACAATTTCTATTTTGCTTCATGCAGAAGTCCCCTTCTAAGTGTATATGCCGACATGTCAGTAACTTGTAAGGTAAAAACCGCCACTCAAATGTATTTGTTAGCATTGATGTATTTTCTCTATCCATGCCAAAGTTGTAGCCTCAATGGTCTCTAGGGTAGCATATACCCGTATATGTTTGTGTTAAATCAAGATACCTGCATCAATTTGAGACAGTGCTTTCTGGATAAACAGTAAACTCCACACAAATTATTTCAGTTTTTTGTTATTGGTGACTGAATTTCTTCTGCATTTAACTATTTGTTTGGTTATCACTGAACGTTGCAATGCTGTTTGGTAACTGTGTTTCACTATCTTATTTAGGAATACTATAACCCAAACCAGTCTATGTTGGAGCTGGTTTTTGCACCAGCCGAAGAATGGATTTCACGTAGTGACGAAGATATTATCGGTGCCACAATGTCTGAACTTGCCAAACTCTTCCCTGATGAAATTTCTGCAGACCAAAGCAAAGCAAAAATCATCAAGTACCACGTTGTTAAAACACCAAGGTTTTAGTCCCACTGAGTTGGATTATTTCTTTTAACATCTTTTACTAAACATATACTGAACTTATGGCATTTTATTTTGTCTTCCGAGTCCTAATGTAACCGACTACATTGTTTCAGGTCAGTTTACAAAACTGTTCCAAATTGTGAACCGTGTCGTCCCTTACAAAGATCTCCTATAGAAGGTTTCTATTTAGCTGGAGATTACACAAAACAAAAATATTTAGCTTCTATGGAAGGTGCTGTTCTTTCTGGGAAGCTTTGTGCACAGGCTATTGTACAGGTAAATCTGTCACTAAAGCATCTACATAATTCGTCAACAAGAAATATTAAATTTTGAACACATTTTATATTATAATTTGAGATGAAGAATTATTATTGTTGAAAGCTCCATACCGAATATTGACCTAACCTGAATAGTGGATATAAGTGGACATCCCTTATCTTACAAACTGAATTTCTGAGGATGAGTTAGAACCGCTTCATGATCTACTTATATGGTGTTTGAACTCATTTGGTTGAATGGACTTTCATATCAACTCAGGAACTAGTAATCCATGAAAGTTTTAGCTATCAAGATAATATAGCTTTGTTCTTTCATTAGCTTGTGTTGATTTGAATGTTTTTTCTATCATTATCTATCACATTGCTGTCTTTAATACGCAGGATTCGGAGCTACTTGCTGCTCGGGGCCAGAAAAGAATAGCTCAAGCAAGTACTGTTTAA

Protein sequence

>MS.gene066846.t1

LQLVLLSVTGUGTMVLLURLFALIIHVLSLMILLISLKLLTCLLPFVLLLVLLNLURLLLLVQDWLACQLQSIWQMLVTSLYCWRQEMFUVERLLHGKMKMETGMRRAYIYSLGLTLMCRTYLENSVLMIGYNGRSILUSLLCQASLESLVDLIFPKSFHLRUMEYGQSUGIMRCUPGQRKSNLQLDFFQLCLVDRRMLRLKMVFLSKNGUENRAFLNVULMKCSUQCQRPUTSSTLMNFQCNVFULLUTDFFRRSMVLRWPFWTETPLKDFVCQLLIILSPWAVKSILIHALKILSUTMITQUKAFYULMGRULKGMLMCLQHQWIFUSFFFLRTGKGFLISRDWRNULEFQSUMFTYGLTENURTRMITFSLAEVPFUVYMPTCQULVRNTITQTSLCWSWFLHQPKNGFHVVTKILSVPQCLNLPNSSLMKFLQTKAKQKSSSTTLLKHQGQFTKLFQIVNRVVPYKDLLUKVSIULEITQNKNIULLWKVLFFLGSFVHRLLYRIRSYLLLGARKEULKQVLF