Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067566.t1 | XP_003607876.1 | 95.4 | 241 | 11 | 0 | 1 | 241 | 50 | 290 | 1.30E-130 | 475.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067566.t1 | O81865 | 50.7 | 203 | 95 | 4 | 43 | 242 | 46 | 246 | 1.5e-55 | 217.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067566.t1 | G7JIT3 | 95.4 | 241 | 11 | 0 | 1 | 241 | 50 | 290 | 9.2e-131 | 475.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene067566 | 0.801835 | 7.47E-49 | -1.69E-46 |
| MS.gene049159 | MS.gene067566 | 0.83637 | 9.74E-57 | -1.69E-46 |
| MS.gene049404 | MS.gene067566 | 0.817359 | 3.44E-52 | -1.69E-46 |
| MS.gene049435 | MS.gene067566 | 0.803995 | 2.67E-49 | -1.69E-46 |
| MS.gene050119 | MS.gene067566 | 0.805708 | 1.17E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene067566 | 0.824829 | 6.53E-54 | -1.69E-46 |
| MS.gene050605 | MS.gene067566 | 0.828915 | 6.89E-55 | -1.69E-46 |
| MS.gene050680 | MS.gene067566 | 0.841792 | 3.83E-58 | -1.69E-46 |
| MS.gene050750 | MS.gene067566 | 0.811116 | 8.22E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene067566 | 0.813291 | 2.76E-51 | -1.69E-46 |
| MS.gene050953 | MS.gene067566 | 0.809066 | 2.27E-50 | -1.69E-46 |
| MS.gene050987 | MS.gene067566 | 0.813775 | 2.16E-51 | -1.69E-46 |
| MS.gene051198 | MS.gene067566 | 0.815907 | 7.27E-52 | -1.69E-46 |
| MS.gene051243 | MS.gene067566 | 0.801415 | 9.10E-49 | -1.69E-46 |
| MS.gene051535 | MS.gene067566 | 0.802534 | 5.36E-49 | -1.69E-46 |
| MS.gene052426 | MS.gene067566 | 0.844193 | 8.80E-59 | -1.69E-46 |
| MS.gene05288 | MS.gene067566 | 0.80749 | 4.93E-50 | -1.69E-46 |
| MS.gene053166 | MS.gene067566 | 0.848623 | 5.45E-60 | -1.69E-46 |
| MS.gene053201 | MS.gene067566 | 0.805486 | 1.30E-49 | -1.69E-46 |
| MS.gene053494 | MS.gene067566 | 0.834595 | 2.74E-56 | -1.69E-46 |
| MS.gene05415 | MS.gene067566 | 0.80135 | 9.39E-49 | -1.69E-46 |
| MS.gene054405 | MS.gene067566 | 0.802152 | 6.42E-49 | -1.69E-46 |
| MS.gene054559 | MS.gene067566 | 0.833609 | 4.83E-56 | -1.69E-46 |
| MS.gene054930 | MS.gene067566 | 0.803699 | 3.08E-49 | -1.69E-46 |
| MS.gene05510 | MS.gene067566 | 0.851005 | 1.18E-60 | -1.69E-46 |
| MS.gene055356 | MS.gene067566 | 0.81968 | 1.02E-52 | -1.69E-46 |
| MS.gene055358 | MS.gene067566 | 0.820106 | 8.17E-53 | -1.69E-46 |
| MS.gene055623 | MS.gene067566 | 0.802603 | 5.19E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene067566 | 0.837956 | 3.83E-57 | -1.69E-46 |
| MS.gene055926 | MS.gene067566 | 0.811467 | 6.90E-51 | -1.69E-46 |
| MS.gene05604 | MS.gene067566 | 0.8137 | 2.24E-51 | -1.69E-46 |
| MS.gene056506 | MS.gene067566 | 0.802243 | 6.15E-49 | -1.69E-46 |
| MS.gene056873 | MS.gene067566 | 0.803251 | 3.81E-49 | -1.69E-46 |
| MS.gene057200 | MS.gene067566 | 0.81265 | 3.81E-51 | -1.69E-46 |
| MS.gene057394 | MS.gene067566 | 0.830411 | 2.98E-55 | -1.69E-46 |
| MS.gene057395 | MS.gene067566 | 0.834074 | 3.70E-56 | -1.69E-46 |
| MS.gene057444 | MS.gene067566 | 0.808476 | 3.04E-50 | -1.69E-46 |
| MS.gene057469 | MS.gene067566 | 0.805595 | 1.24E-49 | -1.69E-46 |
| MS.gene057869 | MS.gene067566 | 0.801472 | 8.86E-49 | -1.69E-46 |
| MS.gene058146 | MS.gene067566 | 0.836032 | 1.19E-56 | -1.69E-46 |
| MS.gene058435 | MS.gene067566 | 0.801499 | 8.75E-49 | -1.69E-46 |
| MS.gene058595 | MS.gene067566 | 0.807342 | 5.30E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene067566 | 0.817939 | 2.54E-52 | -1.69E-46 |
| MS.gene059128 | MS.gene067566 | 0.821979 | 3.03E-53 | -1.69E-46 |
| MS.gene059161 | MS.gene067566 | 0.832769 | 7.82E-56 | -1.69E-46 |
| MS.gene059609 | MS.gene067566 | 0.815078 | 1.11E-51 | -1.69E-46 |
| MS.gene060011 | MS.gene067566 | 0.805189 | 1.51E-49 | -1.69E-46 |
| MS.gene060310 | MS.gene067566 | 0.821684 | 3.54E-53 | -1.69E-46 |
| MS.gene060312 | MS.gene067566 | 0.800108 | 1.68E-48 | -1.69E-46 |
| MS.gene060322 | MS.gene067566 | 0.854263 | 1.38E-61 | -1.69E-46 |
| MS.gene060683 | MS.gene067566 | 0.828446 | 8.95E-55 | -1.69E-46 |
| MS.gene060685 | MS.gene067566 | 0.826576 | 2.52E-54 | -1.69E-46 |
| MS.gene060802 | MS.gene067566 | 0.821682 | 3.55E-53 | -1.69E-46 |
| MS.gene060803 | MS.gene067566 | 0.806631 | 7.49E-50 | -1.69E-46 |
| MS.gene060998 | MS.gene067566 | 0.848343 | 6.51E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067566.t1 | MTR_4g083970 | 95.436 | 241 | 11 | 0 | 1 | 241 | 50 | 290 | 9.74e-174 | 479 |
| MS.gene067566.t1 | MTR_1g079380 | 30.319 | 188 | 110 | 2 | 73 | 241 | 80 | 265 | 2.04e-27 | 107 |
| MS.gene067566.t1 | MTR_1g079260 | 30.457 | 197 | 107 | 6 | 73 | 242 | 80 | 273 | 3.19e-27 | 105 |
| MS.gene067566.t1 | MTR_1g079370 | 26.556 | 241 | 154 | 5 | 21 | 241 | 28 | 265 | 1.30e-26 | 103 |
| MS.gene067566.t1 | MTR_1g079140 | 25.795 | 283 | 156 | 5 | 11 | 241 | 26 | 306 | 7.69e-25 | 100 |
| MS.gene067566.t1 | MTR_1g079460 | 28.877 | 187 | 114 | 2 | 73 | 242 | 83 | 267 | 8.34e-24 | 96.7 |
| MS.gene067566.t1 | MTR_7g112560 | 27.309 | 249 | 164 | 5 | 8 | 241 | 11 | 257 | 2.19e-23 | 95.5 |
| MS.gene067566.t1 | MTR_1g079180 | 30.159 | 189 | 106 | 7 | 73 | 241 | 83 | 265 | 2.82e-22 | 92.4 |
| MS.gene067566.t1 | MTR_1g079200 | 25.000 | 256 | 158 | 6 | 9 | 241 | 20 | 264 | 2.68e-21 | 89.7 |
| MS.gene067566.t1 | MTR_7g112550 | 28.938 | 273 | 146 | 11 | 7 | 241 | 21 | 283 | 3.03e-21 | 90.1 |
| MS.gene067566.t1 | MTR_4g023570 | 26.271 | 236 | 163 | 4 | 8 | 241 | 11 | 237 | 3.38e-21 | 89.0 |
| MS.gene067566.t1 | MTR_1g078470 | 28.718 | 195 | 110 | 8 | 65 | 241 | 1 | 184 | 3.43e-19 | 82.4 |
| MS.gene067566.t1 | MTR_1g100613 | 25.641 | 234 | 141 | 4 | 22 | 224 | 13 | 244 | 9.63e-19 | 82.8 |
| MS.gene067566.t1 | MTR_1g079850 | 27.228 | 202 | 112 | 5 | 73 | 242 | 84 | 282 | 1.18e-18 | 83.2 |
| MS.gene067566.t1 | MTR_1g100597 | 26.201 | 229 | 136 | 7 | 42 | 241 | 48 | 272 | 9.16e-18 | 80.5 |
| MS.gene067566.t1 | MTR_1g079410 | 24.082 | 245 | 158 | 5 | 22 | 241 | 32 | 273 | 9.51e-18 | 80.5 |
| MS.gene067566.t1 | MTR_1g083580 | 26.923 | 260 | 144 | 8 | 20 | 241 | 30 | 281 | 1.04e-17 | 80.5 |
| MS.gene067566.t1 | MTR_1g079230 | 26.531 | 196 | 115 | 3 | 73 | 241 | 80 | 273 | 2.57e-17 | 79.3 |
| MS.gene067566.t1 | MTR_7g103380 | 24.370 | 238 | 150 | 7 | 31 | 242 | 52 | 285 | 8.95e-14 | 69.7 |
| MS.gene067566.t1 | MTR_1g026510 | 27.835 | 194 | 102 | 8 | 84 | 242 | 94 | 284 | 5.12e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067566.t1 | AT4G19840 | 51.961 | 204 | 91 | 5 | 43 | 242 | 46 | 246 | 2.11e-69 | 213 |
| MS.gene067566.t1 | AT4G19850 | 46.667 | 210 | 97 | 7 | 43 | 241 | 13 | 218 | 4.41e-56 | 179 |
| MS.gene067566.t1 | AT4G19850 | 49.383 | 162 | 77 | 3 | 85 | 241 | 15 | 176 | 1.90e-50 | 163 |
| MS.gene067566.t1 | AT4G19850 | 46.237 | 186 | 85 | 7 | 43 | 217 | 13 | 194 | 5.35e-45 | 150 |
| MS.gene067566.t1 | AT1G33920 | 44.079 | 152 | 81 | 3 | 94 | 241 | 13 | 164 | 1.06e-42 | 142 |
| MS.gene067566.t1 | AT1G65390 | 40.361 | 166 | 93 | 4 | 81 | 241 | 246 | 410 | 4.24e-38 | 137 |
| MS.gene067566.t1 | AT2G02240 | 30.894 | 246 | 146 | 6 | 13 | 240 | 77 | 316 | 4.40e-28 | 109 |
| MS.gene067566.t1 | AT5G45090 | 34.146 | 164 | 102 | 4 | 83 | 240 | 167 | 330 | 4.16e-26 | 103 |
| MS.gene067566.t1 | AT5G45090 | 34.146 | 164 | 102 | 4 | 83 | 240 | 145 | 308 | 5.33e-26 | 103 |
| MS.gene067566.t1 | AT2G02360 | 32.114 | 246 | 138 | 9 | 15 | 240 | 32 | 268 | 2.06e-25 | 101 |
| MS.gene067566.t1 | AT2G02250 | 29.482 | 251 | 144 | 11 | 13 | 240 | 63 | 303 | 1.97e-23 | 96.7 |
| MS.gene067566.t1 | AT1G80110 | 34.104 | 173 | 96 | 3 | 84 | 240 | 85 | 255 | 3.96e-22 | 92.0 |
| MS.gene067566.t1 | AT5G45080 | 33.333 | 153 | 96 | 3 | 94 | 240 | 238 | 390 | 4.47e-22 | 94.0 |
| MS.gene067566.t1 | AT2G26820 | 31.818 | 154 | 98 | 3 | 94 | 240 | 308 | 461 | 1.48e-20 | 90.1 |
| MS.gene067566.t1 | AT2G26820 | 31.818 | 154 | 98 | 3 | 94 | 240 | 324 | 477 | 1.49e-20 | 90.1 |
| MS.gene067566.t1 | AT2G02340 | 25.926 | 270 | 151 | 10 | 2 | 240 | 50 | 301 | 7.55e-19 | 84.0 |
| MS.gene067566.t1 | AT5G45070 | 33.133 | 166 | 103 | 6 | 84 | 242 | 190 | 354 | 7.87e-19 | 84.7 |
| MS.gene067566.t1 | AT2G02230 | 34.247 | 146 | 91 | 3 | 13 | 158 | 48 | 188 | 7.11e-18 | 81.6 |
| MS.gene067566.t1 | AT1G09155 | 26.437 | 261 | 151 | 8 | 20 | 241 | 22 | 280 | 3.06e-16 | 76.6 |
| MS.gene067566.t1 | AT2G02320 | 27.490 | 251 | 151 | 9 | 13 | 240 | 56 | 298 | 3.65e-16 | 76.6 |
| MS.gene067566.t1 | AT5G24560 | 25.366 | 205 | 97 | 6 | 39 | 242 | 44 | 193 | 4.69e-16 | 74.3 |
| MS.gene067566.t1 | AT2G02310 | 26.275 | 255 | 158 | 6 | 11 | 242 | 58 | 305 | 3.94e-14 | 70.9 |
| MS.gene067566.t1 | AT1G56250 | 25.941 | 239 | 136 | 7 | 42 | 241 | 45 | 281 | 1.43e-13 | 68.9 |
| MS.gene067566.t1 | AT3G53000 | 26.809 | 235 | 143 | 8 | 31 | 240 | 54 | 284 | 2.80e-13 | 68.2 |
| MS.gene067566.t1 | AT1G12710 | 25.114 | 219 | 141 | 7 | 39 | 240 | 69 | 281 | 3.02e-11 | 62.4 |
Find 52 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATCCATTTCCAATAATT+TGG | 0.178400 | 4.1:+24096818 | None:intergenic |
| AACGTTGTTTGTAGAAATAT+TGG | 0.268294 | 4.1:-24096913 | MS.gene067566:intron |
| GCAACACAAGGAAAATTTAA+TGG | 0.311904 | 4.1:-24096208 | MS.gene067566:CDS |
| GGGCAGAAGATCCAAATTAT+TGG | 0.313201 | 4.1:-24096829 | MS.gene067566:CDS |
| AATGTTCGACTTGTCCTTCC+AGG | 0.347328 | 4.1:-24096243 | MS.gene067566:CDS |
| AAGATCCAAATTATTGGAAA+TGG | 0.355234 | 4.1:-24096823 | MS.gene067566:CDS |
| AAAATCACCCTCCAGCAAAA+AGG | 0.378435 | 4.1:-24097323 | MS.gene067566:CDS |
| GTGTGTTGGTTAGAAGTTCA+TGG | 0.382382 | 4.1:-24096363 | MS.gene067566:CDS |
| GAAACTTGATATAAAATTCC+TGG | 0.384782 | 4.1:+24096315 | None:intergenic |
| AGTTGCTGATTGACTCTCAT+TGG | 0.387700 | 4.1:+24097273 | None:intergenic |
| TGTTGCTGTTTCTTTCCTCC+TGG | 0.398539 | 4.1:+24096225 | None:intergenic |
| AGCTCAGGGTTGGGAACTTC+CGG | 0.410700 | 4.1:-24096268 | MS.gene067566:CDS |
| CAACATGAAACAGTTGGCTT+TGG | 0.410721 | 4.1:+24096877 | None:intergenic |
| ATGTGTGATCAGCTATATAC+TGG | 0.412756 | 4.1:-24097157 | MS.gene067566:CDS |
| GATGCTACAAACTCACCAAC+TGG | 0.464067 | 4.1:+24096156 | None:intergenic |
| CATCGGTTGATAAATCTTCA+AGG | 0.467004 | 4.1:-24097186 | MS.gene067566:CDS |
| ACGTTGTTTGTAGAAATATT+GGG | 0.469595 | 4.1:-24096912 | MS.gene067566:intron |
| GCTGTTTCTTTCCTCCTGGA+AGG | 0.475028 | 4.1:+24096229 | None:intergenic |
| AAAAGATCCAGCTCAGGGTT+GGG | 0.476440 | 4.1:-24096277 | MS.gene067566:CDS |
| TGCATACAACATGAAACAGT+TGG | 0.479048 | 4.1:+24096871 | None:intergenic |
| AAACTTAGTTCTTTGATCAA+AGG | 0.483857 | 4.1:+24097247 | None:intergenic |
| AATGTTAAAAGATCCAGCTC+AGG | 0.485668 | 4.1:-24096283 | MS.gene067566:CDS |
| CAAAAGCACTCTCAATCACC+TGG | 0.496488 | 4.1:-24096850 | MS.gene067566:CDS |
| CAACTATGAGCACATATTGA+AGG | 0.501582 | 4.1:-24097218 | MS.gene067566:CDS |
| GGAAGTTCCCAACCCTGAGC+TGG | 0.506652 | 4.1:+24096270 | None:intergenic |
| GTTAAGAGCACGGTGGATAG+AGG | 0.513931 | 4.1:-24096181 | MS.gene067566:CDS |
| GTTCTTACATCATAAGACTA+AGG | 0.532133 | 4.1:-24097131 | MS.gene067566:intron |
| TAAAAGATCCAGCTCAGGGT+TGG | 0.544106 | 4.1:-24096278 | MS.gene067566:CDS |
| ATATCAATGTTTGAATATGA+AGG | 0.554106 | 4.1:-24096108 | MS.gene067566:CDS |
| AGGACAAGTCGAACATTCAC+CGG | 0.560100 | 4.1:+24096249 | None:intergenic |
| TTGAATATGAAGGTGGTATG+TGG | 0.566199 | 4.1:-24096098 | MS.gene067566:CDS |
| ATAATTTGGATCTTCTGCCC+AGG | 0.570223 | 4.1:+24096832 | None:intergenic |
| ATTGAAGGATGCAGACTCAT+CGG | 0.579330 | 4.1:-24097203 | MS.gene067566:CDS |
| ATCGGTTGATAAATCTTCAA+GGG | 0.586513 | 4.1:-24097185 | MS.gene067566:CDS |
| AAACAAGGGCTTGTCATCAA+AGG | 0.587551 | 4.1:-24096075 | MS.gene067566:CDS |
| GAAGGTGGTATGTGGAAACA+AGG | 0.592943 | 4.1:-24096090 | MS.gene067566:CDS |
| AGGAAAGAAACAGCAACACA+AGG | 0.597408 | 4.1:-24096220 | MS.gene067566:CDS |
| GACACAAGGAAGCTTTCACC+AGG | 0.601273 | 4.1:-24096333 | MS.gene067566:CDS |
| AGGCATTGCTATCAAACCAA+AGG | 0.606104 | 4.1:-24096055 | MS.gene067566:CDS |
| TAATGGAAAAGTTAAGAGCA+CGG | 0.611140 | 4.1:-24096191 | MS.gene067566:CDS |
| ATGTTAAAAGATCCAGCTCA+GGG | 0.613664 | 4.1:-24096282 | MS.gene067566:CDS |
| TCAATGTTTGAATATGAAGG+TGG | 0.618732 | 4.1:-24096105 | MS.gene067566:CDS |
| TTCATGGAAAATTCGACACA+AGG | 0.625618 | 4.1:-24096347 | MS.gene067566:CDS |
| AAGGTGGTATGTGGAAACAA+GGG | 0.657478 | 4.1:-24096089 | MS.gene067566:CDS |
| CAGTGAGGGGATGACTGAGG+TGG | 0.662615 | 4.1:-24096400 | MS.gene067566:CDS |
| CTGAACTGAAGAGAGTGTGT+TGG | 0.663119 | 4.1:-24096377 | MS.gene067566:CDS |
| TTGCAGTGAGGGGATGACTG+AGG | 0.666138 | 4.1:-24096403 | MS.gene067566:intron |
| CGGTGGATAGAGGTTCCAGT+TGG | 0.671489 | 4.1:-24096171 | MS.gene067566:CDS |
| AAAAGCACTCTCAATCACCT+GGG | 0.675178 | 4.1:-24096849 | MS.gene067566:CDS |
| GTTCGACTTGTCCTTCCAGG+AGG | 0.692090 | 4.1:-24096240 | MS.gene067566:CDS |
| AATATGTGCTCATAGTTGTG+TGG | 0.705836 | 4.1:+24097223 | None:intergenic |
| TGGAAAAGTTAAGAGCACGG+TGG | 0.775430 | 4.1:-24096188 | MS.gene067566:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAACTAAATTCAATTTCA+AGG | + | chr4.1:24096403-24096422 | None:intergenic | 15.0% |
| !! | GATTAAATTGTTGATATAAT+AGG | + | chr4.1:24096649-24096668 | None:intergenic | 15.0% |
| !!! | TTTTTCTAAGTTATATGTAA+AGG | + | chr4.1:24096754-24096773 | None:intergenic | 15.0% |
| !! | ATATCAATGTTTGAATATGA+AGG | - | chr4.1:24097291-24097310 | MS.gene067566:CDS | 20.0% |
| !! | TAGGAAAAGATAATGATATA+AGG | + | chr4.1:24096630-24096649 | None:intergenic | 20.0% |
| !! | TGAAATTATTTGTAATCACT+GGG | + | chr4.1:24096671-24096690 | None:intergenic | 20.0% |
| !! | TTGAAATTATTTGTAATCAC+TGG | + | chr4.1:24096672-24096691 | None:intergenic | 20.0% |
| ! | AAACATAGCTTGATCTAATT+AGG | + | chr4.1:24096977-24096996 | None:intergenic | 25.0% |
| ! | AACGTTGTTTGTAGAAATAT+TGG | - | chr4.1:24096486-24096505 | MS.gene067566:intron | 25.0% |
| ! | AAGATCCAAATTATTGGAAA+TGG | - | chr4.1:24096576-24096595 | MS.gene067566:intron | 25.0% |
| ! | ACGTTGTTTGTAGAAATATT+GGG | - | chr4.1:24096487-24096506 | MS.gene067566:intron | 25.0% |
| ! | ATTACAAGCTAATTCTATCT+AGG | - | chr4.1:24096885-24096904 | MS.gene067566:CDS | 25.0% |
| ! | GAAACTTGATATAAAATTCC+TGG | + | chr4.1:24097087-24097106 | None:intergenic | 25.0% |
| ! | TGTAATTCATAGATGTTTCT+TGG | + | chr4.1:24096871-24096890 | None:intergenic | 25.0% |
| ! | TGTATCCATTTCCAATAATT+TGG | + | chr4.1:24096584-24096603 | None:intergenic | 25.0% |
| !! | AAACTTAGTTCTTTGATCAA+AGG | + | chr4.1:24096155-24096174 | None:intergenic | 25.0% |
| ATCTCAGGACAATTGTAAAA+TGG | + | chr4.1:24096366-24096385 | None:intergenic | 30.0% | |
| GACGAAATTTAAATCATCTC+AGG | + | chr4.1:24096381-24096400 | None:intergenic | 30.0% | |
| GCAACACAAGGAAAATTTAA+TGG | - | chr4.1:24097191-24097210 | MS.gene067566:CDS | 30.0% | |
| GTTCTTACATCATAAGACTA+AGG | - | chr4.1:24096268-24096287 | MS.gene067566:CDS | 30.0% | |
| TAATGGAAAAGTTAAGAGCA+CGG | - | chr4.1:24097208-24097227 | MS.gene067566:CDS | 30.0% | |
| TCAATGTTTGAATATGAAGG+TGG | - | chr4.1:24097294-24097313 | MS.gene067566:CDS | 30.0% | |
| TTTAGGGACTAAATTGAAGA+TGG | + | chr4.1:24096815-24096834 | None:intergenic | 30.0% | |
| TTTGTAGCATCTGAAAAAGA+TGG | - | chr4.1:24097255-24097274 | MS.gene067566:CDS | 30.0% | |
| !! | ATCGGTTGATAAATCTTCAA+GGG | - | chr4.1:24096214-24096233 | MS.gene067566:CDS | 30.0% |
| AATATGTGCTCATAGTTGTG+TGG | + | chr4.1:24096179-24096198 | None:intergenic | 35.0% | |
| AATGTTAAAAGATCCAGCTC+AGG | - | chr4.1:24097116-24097135 | MS.gene067566:intron | 35.0% | |
| ATGTGTGATCAGCTATATAC+TGG | - | chr4.1:24096242-24096261 | MS.gene067566:CDS | 35.0% | |
| ATGTTAAAAGATCCAGCTCA+GGG | - | chr4.1:24097117-24097136 | MS.gene067566:intron | 35.0% | |
| CAACTATGAGCACATATTGA+AGG | - | chr4.1:24096181-24096200 | MS.gene067566:CDS | 35.0% | |
| GGATACAGCAAAAAGATGTT+AGG | - | chr4.1:24096597-24096616 | MS.gene067566:intron | 35.0% | |
| TGCATACAACATGAAACAGT+TGG | + | chr4.1:24096531-24096550 | None:intergenic | 35.0% | |
| TTCATGGAAAATTCGACACA+AGG | - | chr4.1:24097052-24097071 | MS.gene067566:intron | 35.0% | |
| TTGAATATGAAGGTGGTATG+TGG | - | chr4.1:24097301-24097320 | MS.gene067566:CDS | 35.0% | |
| !! | CATCGGTTGATAAATCTTCA+AGG | - | chr4.1:24096213-24096232 | MS.gene067566:CDS | 35.0% |
| !! | TTCTATCTAGGACTTTTGTC+TGG | - | chr4.1:24096897-24096916 | MS.gene067566:CDS | 35.0% |
| AAAATCACCCTCCAGCAAAA+AGG | - | chr4.1:24096076-24096095 | MS.gene067566:CDS | 40.0% | |
| AAACAAGGGCTTGTCATCAA+AGG | - | chr4.1:24097324-24097343 | MS.gene067566:CDS | 40.0% | |
| AAGGTGGTATGTGGAAACAA+GGG | - | chr4.1:24097310-24097329 | MS.gene067566:CDS | 40.0% | |
| AGGAAAGAAACAGCAACACA+AGG | - | chr4.1:24097179-24097198 | MS.gene067566:CDS | 40.0% | |
| ATAATTTGGATCTTCTGCCC+AGG | + | chr4.1:24096570-24096589 | None:intergenic | 40.0% | |
| ATTGAAGGATGCAGACTCAT+CGG | - | chr4.1:24096196-24096215 | MS.gene067566:CDS | 40.0% | |
| GGGCAGAAGATCCAAATTAT+TGG | - | chr4.1:24096570-24096589 | MS.gene067566:intron | 40.0% | |
| GTAGCATCTGAAAAAGATGG+CGG | - | chr4.1:24097258-24097277 | MS.gene067566:CDS | 40.0% | |
| ! | AAGCTATGTTTTGCAGTGAG+GGG | - | chr4.1:24096986-24097005 | MS.gene067566:intron | 40.0% |
| ! | AGGCATTGCTATCAAACCAA+AGG | - | chr4.1:24097344-24097363 | MS.gene067566:CDS | 40.0% |
| ! | AGTTGCTGATTGACTCTCAT+TGG | + | chr4.1:24096129-24096148 | None:intergenic | 40.0% |
| ! | CAACATGAAACAGTTGGCTT+TGG | + | chr4.1:24096525-24096544 | None:intergenic | 40.0% |
| ! | CAAGCTATGTTTTGCAGTGA+GGG | - | chr4.1:24096985-24097004 | MS.gene067566:intron | 40.0% |
| ! | GGTGATTTTGTGTGATGTTG+AGG | + | chr4.1:24096065-24096084 | None:intergenic | 40.0% |
| ! | GTTTTGTACTGCCTTTTTGC+TGG | + | chr4.1:24096090-24096109 | None:intergenic | 40.0% |
| ! | TCAAGCTATGTTTTGCAGTG+AGG | - | chr4.1:24096984-24097003 | MS.gene067566:intron | 40.0% |
| !! | AAAAGCACTCTCAATCACCT+GGG | - | chr4.1:24096550-24096569 | MS.gene067566:intron | 40.0% |
| !! | GTGTGTTGGTTAGAAGTTCA+TGG | - | chr4.1:24097036-24097055 | MS.gene067566:intron | 40.0% |
| AAAAGATCCAGCTCAGGGTT+GGG | - | chr4.1:24097122-24097141 | MS.gene067566:intron | 45.0% | |
| AGGACAAGTCGAACATTCAC+CGG | + | chr4.1:24097153-24097172 | None:intergenic | 45.0% | |
| GAAGGTGGTATGTGGAAACA+AGG | - | chr4.1:24097309-24097328 | MS.gene067566:CDS | 45.0% | |
| GATGCTACAAACTCACCAAC+TGG | + | chr4.1:24097246-24097265 | None:intergenic | 45.0% | |
| TAAAAGATCCAGCTCAGGGT+TGG | - | chr4.1:24097121-24097140 | MS.gene067566:intron | 45.0% | |
| ! | AATGTTCGACTTGTCCTTCC+AGG | - | chr4.1:24097156-24097175 | MS.gene067566:CDS | 45.0% |
| ! | CTGAACTGAAGAGAGTGTGT+TGG | - | chr4.1:24097022-24097041 | MS.gene067566:intron | 45.0% |
| ! | TGAAAAAGATGGCGGTGAGA+TGG | - | chr4.1:24097266-24097285 | MS.gene067566:CDS | 45.0% |
| ! | TGGAAAAGTTAAGAGCACGG+TGG | - | chr4.1:24097211-24097230 | MS.gene067566:CDS | 45.0% |
| ! | TGTACTGCCTTTTTGCTGGA+GGG | + | chr4.1:24096086-24096105 | None:intergenic | 45.0% |
| ! | TTGTACTGCCTTTTTGCTGG+AGG | + | chr4.1:24096087-24096106 | None:intergenic | 45.0% |
| !! | CAAAAGCACTCTCAATCACC+TGG | - | chr4.1:24096549-24096568 | MS.gene067566:intron | 45.0% |
| !! | TGTTGCTGTTTCTTTCCTCC+TGG | + | chr4.1:24097177-24097196 | None:intergenic | 45.0% |
| !! | TAAAAAATTTATATAGTTTA+GGG | + | chr4.1:24096831-24096850 | None:intergenic | 5.0% |
| !! | TTAAAAAATTTATATAGTTT+AGG | + | chr4.1:24096832-24096851 | None:intergenic | 5.0% |
| GACACAAGGAAGCTTTCACC+AGG | - | chr4.1:24097066-24097085 | MS.gene067566:intron | 50.0% | |
| ! | GTTAAGAGCACGGTGGATAG+AGG | - | chr4.1:24097218-24097237 | MS.gene067566:CDS | 50.0% |
| !! | GCTGTTTCTTTCCTCCTGGA+AGG | + | chr4.1:24097173-24097192 | None:intergenic | 50.0% |
| AGCTCAGGGTTGGGAACTTC+CGG | - | chr4.1:24097131-24097150 | MS.gene067566:intron | 55.0% | |
| CGGTGGATAGAGGTTCCAGT+TGG | - | chr4.1:24097228-24097247 | MS.gene067566:CDS | 55.0% | |
| TTGCAGTGAGGGGATGACTG+AGG | - | chr4.1:24096996-24097015 | MS.gene067566:intron | 55.0% | |
| ! | GTTCGACTTGTCCTTCCAGG+AGG | - | chr4.1:24097159-24097178 | MS.gene067566:CDS | 55.0% |
| CAGTGAGGGGATGACTGAGG+TGG | - | chr4.1:24096999-24097018 | MS.gene067566:intron | 60.0% | |
| GGAAGTTCCCAACCCTGAGC+TGG | + | chr4.1:24097132-24097151 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 24096050 | 24097371 | 24096050 | ID=MS.gene067566 |
| chr4.1 | mRNA | 24096050 | 24097371 | 24096050 | ID=MS.gene067566.t1;Parent=MS.gene067566 |
| chr4.1 | exon | 24097132 | 24097371 | 24097132 | ID=MS.gene067566.t1.exon1;Parent=MS.gene067566.t1 |
| chr4.1 | CDS | 24097132 | 24097371 | 24097132 | ID=cds.MS.gene067566.t1;Parent=MS.gene067566.t1 |
| chr4.1 | exon | 24096803 | 24096921 | 24096803 | ID=MS.gene067566.t1.exon2;Parent=MS.gene067566.t1 |
| chr4.1 | CDS | 24096803 | 24096921 | 24096803 | ID=cds.MS.gene067566.t1;Parent=MS.gene067566.t1 |
| chr4.1 | exon | 24096050 | 24096419 | 24096050 | ID=MS.gene067566.t1.exon3;Parent=MS.gene067566.t1 |
| chr4.1 | CDS | 24096050 | 24096419 | 24096050 | ID=cds.MS.gene067566.t1;Parent=MS.gene067566.t1 |
| Gene Sequence |
| Protein sequence |
