Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25942.t1 | XP_013461011.1 | 100 | 73 | 0 | 0 | 1 | 73 | 1 | 73 | 9.20E-08 | 65.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25942.t1 | I3SYL1 | 100.0 | 73 | 0 | 0 | 1 | 73 | 1 | 73 | 6.6e-08 | 65.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049140 | MS.gene25942 | 0.825403 | 4.78E-54 | -1.69E-46 |
MS.gene049166 | MS.gene25942 | 0.831244 | 1.86E-55 | -1.69E-46 |
MS.gene049756 | MS.gene25942 | 0.832881 | 7.34E-56 | -1.69E-46 |
MS.gene049786 | MS.gene25942 | 0.805796 | 1.12E-49 | -1.69E-46 |
MS.gene049861 | MS.gene25942 | 0.822109 | 2.82E-53 | -1.69E-46 |
MS.gene050114 | MS.gene25942 | 0.845987 | 2.88E-59 | -1.69E-46 |
MS.gene050277 | MS.gene25942 | 0.839326 | 1.69E-57 | -1.69E-46 |
MS.gene050303 | MS.gene25942 | 0.838173 | 3.36E-57 | -1.69E-46 |
MS.gene050317 | MS.gene25942 | 0.859436 | 4.14E-63 | -1.69E-46 |
MS.gene050320 | MS.gene25942 | 0.836247 | 1.05E-56 | -1.69E-46 |
MS.gene050752 | MS.gene25942 | 0.809479 | 1.85E-50 | -1.69E-46 |
MS.gene051003 | MS.gene25942 | 0.82469 | 7.04E-54 | -1.69E-46 |
MS.gene051245 | MS.gene25942 | 0.84541 | 4.13E-59 | -1.69E-46 |
MS.gene051451 | MS.gene25942 | 0.830398 | 3.00E-55 | -1.69E-46 |
MS.gene051452 | MS.gene25942 | 0.806177 | 9.34E-50 | -1.69E-46 |
MS.gene051655 | MS.gene25942 | 0.809891 | 1.51E-50 | -1.69E-46 |
MS.gene051676 | MS.gene25942 | 0.800205 | 1.61E-48 | -1.69E-46 |
MS.gene051746 | MS.gene25942 | 0.840698 | 7.43E-58 | -1.69E-46 |
MS.gene051748 | MS.gene25942 | 0.85459 | 1.11E-61 | -1.69E-46 |
MS.gene051756 | MS.gene25942 | 0.838152 | 3.41E-57 | -1.69E-46 |
MS.gene051757 | MS.gene25942 | 0.822414 | 2.40E-53 | -1.69E-46 |
MS.gene05188 | MS.gene25942 | 0.837267 | 5.75E-57 | -1.69E-46 |
MS.gene051903 | MS.gene25942 | 0.833117 | 6.41E-56 | -1.69E-46 |
MS.gene051975 | MS.gene25942 | 0.856987 | 2.22E-62 | -1.69E-46 |
MS.gene052434 | MS.gene25942 | 0.858742 | 6.68E-63 | -1.69E-46 |
MS.gene052947 | MS.gene25942 | 0.813084 | 3.06E-51 | -1.69E-46 |
MS.gene053058 | MS.gene25942 | 0.831861 | 1.31E-55 | -1.69E-46 |
MS.gene053109 | MS.gene25942 | 0.855384 | 6.54E-62 | -1.69E-46 |
MS.gene053298 | MS.gene25942 | 0.813102 | 3.03E-51 | -1.69E-46 |
MS.gene053381 | MS.gene25942 | 0.819747 | 9.88E-53 | -1.69E-46 |
MS.gene053564 | MS.gene25942 | 0.812136 | 4.93E-51 | -1.69E-46 |
MS.gene053952 | MS.gene25942 | 0.803547 | 3.31E-49 | -1.69E-46 |
MS.gene054403 | MS.gene25942 | 0.807462 | 5.00E-50 | -1.69E-46 |
MS.gene05469 | MS.gene25942 | 0.838397 | 2.95E-57 | -1.69E-46 |
MS.gene05517 | MS.gene25942 | 0.813407 | 2.60E-51 | -1.69E-46 |
MS.gene055311 | MS.gene25942 | 0.834245 | 3.35E-56 | -1.69E-46 |
MS.gene055313 | MS.gene25942 | 0.808806 | 2.58E-50 | -1.69E-46 |
MS.gene055314 | MS.gene25942 | 0.811956 | 5.40E-51 | -1.69E-46 |
MS.gene055441 | MS.gene25942 | 0.809694 | 1.67E-50 | -1.69E-46 |
MS.gene055603 | MS.gene25942 | 0.846159 | 2.59E-59 | -1.69E-46 |
MS.gene056181 | MS.gene25942 | 0.812789 | 3.55E-51 | -1.69E-46 |
MS.gene056403 | MS.gene25942 | 0.831866 | 1.31E-55 | -1.69E-46 |
MS.gene056580 | MS.gene25942 | 0.81025 | 1.27E-50 | -1.69E-46 |
MS.gene056605 | MS.gene25942 | 0.847514 | 1.10E-59 | -1.69E-46 |
MS.gene056631 | MS.gene25942 | 0.853159 | 2.87E-61 | -1.69E-46 |
MS.gene056638 | MS.gene25942 | 0.815818 | 7.61E-52 | -1.69E-46 |
MS.gene056752 | MS.gene25942 | 0.817658 | 2.94E-52 | -1.69E-46 |
MS.gene056787 | MS.gene25942 | 0.837344 | 5.50E-57 | -1.69E-46 |
MS.gene056849 | MS.gene25942 | 0.815772 | 7.79E-52 | -1.69E-46 |
MS.gene056901 | MS.gene25942 | 0.800724 | 1.26E-48 | -1.69E-46 |
MS.gene056986 | MS.gene25942 | 0.882457 | 1.02E-70 | -1.69E-46 |
MS.gene057057 | MS.gene25942 | 0.807366 | 5.24E-50 | -1.69E-46 |
MS.gene057079 | MS.gene25942 | 0.805535 | 1.27E-49 | -1.69E-46 |
MS.gene057094 | MS.gene25942 | 0.849735 | 2.67E-60 | -1.69E-46 |
MS.gene057140 | MS.gene25942 | 0.827516 | 1.50E-54 | -1.69E-46 |
MS.gene057234 | MS.gene25942 | 0.835292 | 1.83E-56 | -1.69E-46 |
MS.gene057360 | MS.gene25942 | 0.817789 | 2.75E-52 | -1.69E-46 |
MS.gene057452 | MS.gene25942 | -0.80507 | 1.59E-49 | -1.69E-46 |
MS.gene05781 | MS.gene25942 | 0.820252 | 7.57E-53 | -1.69E-46 |
MS.gene057999 | MS.gene25942 | 0.851869 | 6.70E-61 | -1.69E-46 |
MS.gene058084 | MS.gene25942 | 0.807241 | 5.56E-50 | -1.69E-46 |
MS.gene058238 | MS.gene25942 | 0.878982 | 1.81E-69 | -1.69E-46 |
MS.gene058906 | MS.gene25942 | 0.819951 | 8.87E-53 | -1.69E-46 |
MS.gene059050 | MS.gene25942 | 0.800498 | 1.40E-48 | -1.69E-46 |
MS.gene059146 | MS.gene25942 | 0.820699 | 5.98E-53 | -1.69E-46 |
MS.gene059249 | MS.gene25942 | 0.810696 | 1.01E-50 | -1.69E-46 |
MS.gene059360 | MS.gene25942 | 0.828239 | 1.00E-54 | -1.69E-46 |
MS.gene059830 | MS.gene25942 | 0.86832 | 7.13E-66 | -1.69E-46 |
MS.gene06001 | MS.gene25942 | 0.834951 | 2.23E-56 | -1.69E-46 |
MS.gene06010 | MS.gene25942 | 0.836516 | 8.94E-57 | -1.69E-46 |
MS.gene06011 | MS.gene25942 | 0.881384 | 2.51E-70 | -1.69E-46 |
MS.gene060297 | MS.gene25942 | 0.819561 | 1.09E-52 | -1.69E-46 |
MS.gene060586 | MS.gene25942 | 0.866613 | 2.51E-65 | -1.69E-46 |
MS.gene060702 | MS.gene25942 | 0.820818 | 5.61E-53 | -1.69E-46 |
MS.gene060763 | MS.gene25942 | 0.831425 | 1.68E-55 | -1.69E-46 |
MS.gene060830 | MS.gene25942 | 0.810712 | 1.01E-50 | -1.69E-46 |
MS.gene060869 | MS.gene25942 | 0.829367 | 5.36E-55 | -1.69E-46 |
MS.gene060870 | MS.gene25942 | 0.814727 | 1.33E-51 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25942.t1 | MTR_3g078130 | 100.000 | 73 | 0 | 0 | 1 | 73 | 1 | 73 | 4.87e-44 | 136 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25942.t1 | AT1G64750 | 76.712 | 73 | 16 | 1 | 1 | 72 | 1 | 73 | 3.24e-11 | 53.5 |
MS.gene25942.t1 | AT1G64750 | 76.712 | 73 | 16 | 1 | 1 | 72 | 1 | 73 | 3.24e-11 | 53.5 |
Find 17 sgRNAs with CRISPR-Local
Find 59 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCAACAATGGGAGGATGAT+TGG | 0.329365 | 3.2:-69036937 | MS.gene25942:CDS |
TCAACAATGGGAGGATGATT+GGG | 0.443446 | 3.2:-69036936 | MS.gene25942:CDS |
ATTTCTCTGTTCAGCTGAGA+AGG | 0.461195 | 3.2:-69036892 | MS.gene25942:CDS |
TGTTCAGCTGAGAAGGGAGT+TGG | 0.494913 | 3.2:-69036885 | MS.gene25942:CDS |
GAAAGAAGTAACTCAACAAT+GGG | 0.498445 | 3.2:-69036948 | MS.gene25942:CDS |
GAAGAGTTTGAAATCAATGA+AGG | 0.502774 | 3.2:-69037974 | MS.gene25942:intron |
GAGTGGGATGACATGGAGGA+AGG | 0.532354 | 3.2:-69036971 | MS.gene25942:CDS |
TTTCTCTGTTCAGCTGAGAA+GGG | 0.558420 | 3.2:-69036891 | MS.gene25942:CDS |
AGCCTTTGCTTCAGTCGCCA+TGG | 0.560336 | 3.2:+69038045 | None:intergenic |
GGAAAGAAGTAACTCAACAA+TGG | 0.565472 | 3.2:-69036949 | MS.gene25942:CDS |
ATCCATGGCGACTGAAGCAA+AGG | 0.576258 | 3.2:-69038047 | None:intergenic |
ACTTGCAGAGTGGGATGACA+TGG | 0.578383 | 3.2:-69036978 | MS.gene25942:intron |
AGTGGGATGACATGGAGGAA+GGG | 0.591985 | 3.2:-69036970 | MS.gene25942:CDS |
TGAAGCAAAGGCTGTGACCG+AGG | 0.600680 | 3.2:-69038035 | MS.gene25942:CDS |
TAGATCGATCTTGACATCCT+CGG | 0.618819 | 3.2:+69038018 | None:intergenic |
AGAAGTAACTCAACAATGGG+AGG | 0.631574 | 3.2:-69036945 | MS.gene25942:CDS |
TGCAGAGTGGGATGACATGG+AGG | 0.657206 | 3.2:-69036975 | MS.gene25942:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAGTTTCAAATTACATGATT+GGG | + | chr3.2:69037413-69037432 | None:intergenic | 20.0% |
!! | TAAGTTTCAAATTACATGAT+TGG | + | chr3.2:69037414-69037433 | None:intergenic | 20.0% |
! | AACATCACTGAAAATTTCTT+AGG | + | chr3.2:69037034-69037053 | None:intergenic | 25.0% |
! | ATTGGCATTTGTATGTTAAT+TGG | - | chr3.2:69037787-69037806 | MS.gene25942:intron | 25.0% |
! | ATTTCATACACGAAATAAAG+TGG | + | chr3.2:69037454-69037473 | None:intergenic | 25.0% |
! | CTTATACATAAGCACTTATT+TGG | - | chr3.2:69037334-69037353 | MS.gene25942:intron | 25.0% |
! | GTTTGGCATTCAATTAATTA+CGG | - | chr3.2:69037157-69037176 | MS.gene25942:intron | 25.0% |
! | TTTGGCATTCAATTAATTAC+GGG | - | chr3.2:69037158-69037177 | MS.gene25942:intron | 25.0% |
!! | ATTATCTTTGCTTCTGTTTT+AGG | - | chr3.2:69036988-69037007 | MS.gene25942:intron | 25.0% |
!! | TGTTAATCCTATTTCTCATT+AGG | - | chr3.2:69037701-69037720 | MS.gene25942:intron | 25.0% |
!!! | TGAATCTCATTTAGTTTGAT+TGG | - | chr3.2:69037769-69037788 | MS.gene25942:intron | 25.0% |
AAGCAAAGATAATTGCATCA+GGG | + | chr3.2:69036981-69037000 | None:intergenic | 30.0% | |
ACAGCACTTATATACTAGAT+AGG | + | chr3.2:69037201-69037220 | None:intergenic | 30.0% | |
CAAATTACATGATTGGGTTA+TGG | + | chr3.2:69037407-69037426 | None:intergenic | 30.0% | |
GAAAGAAGTAACTCAACAAT+GGG | - | chr3.2:69037957-69037976 | MS.gene25942:intron | 30.0% | |
GCTGCATCATTTATATAATC+AGG | + | chr3.2:69037556-69037575 | None:intergenic | 30.0% | |
TTTCTTGACGACTTGAAATT+AGG | - | chr3.2:69037829-69037848 | MS.gene25942:intron | 30.0% | |
! | GAACATTTGTTAGACTGTTT+GGG | - | chr3.2:69037238-69037257 | MS.gene25942:intron | 30.0% |
! | GAAGAGTTTGAAATCAATGA+AGG | - | chr3.2:69036931-69036950 | MS.gene25942:CDS | 30.0% |
! | TCTAGTATATAAGTGCTGTT+TGG | - | chr3.2:69037202-69037221 | MS.gene25942:intron | 30.0% |
! | TGAACATTTGTTAGACTGTT+TGG | - | chr3.2:69037237-69037256 | MS.gene25942:intron | 30.0% |
AGATTAGATTGTGAGTGCAA+TGG | + | chr3.2:69037871-69037890 | None:intergenic | 35.0% | |
ATACACGAAATAAAGTGGTG+AGG | + | chr3.2:69037449-69037468 | None:intergenic | 35.0% | |
ATCCTAATTCGTTTCTTCCA+CGG | + | chr3.2:69037097-69037116 | None:intergenic | 35.0% | |
ATTAGGCATGAACACTTCTA+GGG | - | chr3.2:69037718-69037737 | MS.gene25942:intron | 35.0% | |
GAAGCAAAGATAATTGCATC+AGG | + | chr3.2:69036982-69037001 | None:intergenic | 35.0% | |
GGAAAGAAGTAACTCAACAA+TGG | - | chr3.2:69037956-69037975 | MS.gene25942:intron | 35.0% | |
GTTCATGCCTAATGAGAAAT+AGG | + | chr3.2:69037711-69037730 | None:intergenic | 35.0% | |
TAATTGCATCAGGGAAGAAA+CGG | + | chr3.2:69036972-69036991 | None:intergenic | 35.0% | |
TTACATGATTGGGTTATGGT+TGG | + | chr3.2:69037403-69037422 | None:intergenic | 35.0% | |
TTCAAGTCGTCAAGAAAAGT+TGG | + | chr3.2:69037826-69037845 | None:intergenic | 35.0% | |
! | GACTTGAAATTAGGAGGTTT+TGG | - | chr3.2:69037838-69037857 | MS.gene25942:intron | 35.0% |
! | TGTTTTACAACTTGCAGAGT+GGG | - | chr3.2:69037918-69037937 | MS.gene25942:intron | 35.0% |
!! | ACTTCTAGGGCGAAAATTAT+AGG | - | chr3.2:69037731-69037750 | MS.gene25942:intron | 35.0% |
!! | TATTCATTAGTTTGCTTCCG+TGG | - | chr3.2:69037077-69037096 | MS.gene25942:intron | 35.0% |
!! | TTGTTTTACAACTTGCAGAG+TGG | - | chr3.2:69037917-69037936 | MS.gene25942:intron | 35.0% |
AATTGCATCAGGGAAGAAAC+GGG | + | chr3.2:69036971-69036990 | None:intergenic | 40.0% | |
AGAAGTAACTCAACAATGGG+AGG | - | chr3.2:69037960-69037979 | MS.gene25942:intron | 40.0% | |
AGACTGTTTGGGAGAACTTA+TGG | - | chr3.2:69037249-69037268 | MS.gene25942:intron | 40.0% | |
ATTTCTCTGTTCAGCTGAGA+AGG | - | chr3.2:69038013-69038032 | MS.gene25942:CDS | 40.0% | |
CATTAGGCATGAACACTTCT+AGG | - | chr3.2:69037717-69037736 | MS.gene25942:intron | 40.0% | |
CTTGACGACTTGAAATTAGG+AGG | - | chr3.2:69037832-69037851 | MS.gene25942:intron | 40.0% | |
GGCATTCAATTAATTACGGG+AGG | - | chr3.2:69037161-69037180 | MS.gene25942:intron | 40.0% | |
GTCGTCAAGAAAAGTTGGAT+AGG | + | chr3.2:69037821-69037840 | None:intergenic | 40.0% | |
TAGATCGATCTTGACATCCT+CGG | + | chr3.2:69036890-69036909 | None:intergenic | 40.0% | |
TCAACAATGGGAGGATGATT+GGG | - | chr3.2:69037969-69037988 | MS.gene25942:intron | 40.0% | |
TGAGCTAGACTTTGTGTGTT+TGG | - | chr3.2:69037140-69037159 | MS.gene25942:intron | 40.0% | |
TTCCGTGGAAGAAACGAATT+AGG | - | chr3.2:69037092-69037111 | MS.gene25942:intron | 40.0% | |
TTTCTCTGTTCAGCTGAGAA+GGG | - | chr3.2:69038014-69038033 | MS.gene25942:CDS | 40.0% | |
ATGCCACTACTCTCTTCTCA+TGG | - | chr3.2:69037677-69037696 | MS.gene25942:intron | 45.0% | |
CTCAACAATGGGAGGATGAT+TGG | - | chr3.2:69037968-69037987 | MS.gene25942:intron | 45.0% | |
TGCCACTACTCTCTTCTCAT+GGG | - | chr3.2:69037678-69037697 | MS.gene25942:intron | 45.0% | |
ACTTGCAGAGTGGGATGACA+TGG | - | chr3.2:69037927-69037946 | MS.gene25942:intron | 50.0% | |
AGTGGGATGACATGGAGGAA+GGG | - | chr3.2:69037935-69037954 | MS.gene25942:intron | 50.0% | |
CACCCATGAGAAGAGAGTAG+TGG | + | chr3.2:69037683-69037702 | None:intergenic | 50.0% | |
TGTTCAGCTGAGAAGGGAGT+TGG | - | chr3.2:69038020-69038039 | MS.gene25942:CDS | 50.0% | |
GAGTGGGATGACATGGAGGA+AGG | - | chr3.2:69037934-69037953 | MS.gene25942:intron | 55.0% | |
TGAAGCAAAGGCTGTGACCG+AGG | - | chr3.2:69036870-69036889 | MS.gene25942:CDS | 55.0% | |
TGCAGAGTGGGATGACATGG+AGG | - | chr3.2:69037930-69037949 | MS.gene25942:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 69036862 | 69038065 | 69036862 | ID=MS.gene25942 |
chr3.2 | mRNA | 69036862 | 69038065 | 69036862 | ID=MS.gene25942.t1;Parent=MS.gene25942 |
chr3.2 | exon | 69037975 | 69038065 | 69037975 | ID=MS.gene25942.t1.exon1;Parent=MS.gene25942.t1 |
chr3.2 | CDS | 69037975 | 69038065 | 69037975 | ID=cds.MS.gene25942.t1;Parent=MS.gene25942.t1 |
chr3.2 | exon | 69036862 | 69036992 | 69036862 | ID=MS.gene25942.t1.exon2;Parent=MS.gene25942.t1 |
chr3.2 | CDS | 69036862 | 69036992 | 69036862 | ID=cds.MS.gene25942.t1;Parent=MS.gene25942.t1 |
Gene Sequence |
Protein sequence |