AlfalfaGEDB | MS.gene48389

M. sativa cultivar XinJiangDaYe / MS.gene48389

KEGG: K10881
GO: GO:0005575 GO:0006405 GO:0006406 GO:0006810 GO:0006913 GO:0008150 GO:0008541 GO:0009987 GO:0015931 GO:0016043 GO:0022607 GO:0032991 GO:0034622 GO:0043248 GO:0043933 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0065003 GO:0071702 GO:0071705 GO:0071840
PFAM: PF05160.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48389.t1	GAU19652.1	91.2	34	3	0	1	34	1	34	3.40E-07	63.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48389.t1	Q9FL96	77.8	36	7	1	1	35	1	36	5.5e-06	51.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48389.t1	A0A2Z6LNG4	91.2	34	3	0	1	34	1	34	2.5e-07	63.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene48389	0.856018	4.27E-62	-1.69E-46
MS.gene049271	MS.gene48389	0.802338	5.88E-49	-1.69E-46
MS.gene049404	MS.gene48389	0.850238	1.93E-60	-1.69E-46
MS.gene049821	MS.gene48389	0.812454	4.21E-51	-1.69E-46
MS.gene049824	MS.gene48389	0.802078	6.65E-49	-1.69E-46
MS.gene049825	MS.gene48389	0.832567	8.78E-56	-1.69E-46
MS.gene049873	MS.gene48389	0.833994	3.87E-56	-1.69E-46
MS.gene050026	MS.gene48389	0.828061	1.11E-54	-1.69E-46
MS.gene050273	MS.gene48389	0.812616	3.88E-51	-1.69E-46
MS.gene050355	MS.gene48389	0.822758	2.00E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene011376	MS.gene48389	PPI
MS.gene06729	MS.gene48389	PPI
MS.gene06946	MS.gene48389	PPI
MS.gene28454	MS.gene48389	PPI
MS.gene32974	MS.gene48389	PPI
MS.gene40486	MS.gene48389	PPI
MS.gene48389	MS.gene051630	PPI
MS.gene48389	MS.gene44230	PPI
MS.gene48389	MS.gene48281	PPI
MS.gene48389	MS.gene057144	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 17 sgRNAs with CRISPR-Local

Find 28 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTTCCGAGAACGTCA+AGG	0.660047	8.3:+17068120	MS.gene48389:CDS
ACTTGCAGGTTGGGAAGACA+AGG	0.596138	8.3:+17068332	MS.gene48389:intron
AGACAAGGAGGAAGGGAGAG+AGG	0.431303	8.3:+17068347	MS.gene48389:CDS
CAGCTAAAGAGAGAGTTAGA+GGG	0.638489	8.3:+17068429	MS.gene48389:CDS
CTCAGCAATGGGAAGATGAT+TGG	0.389575	8.3:+17068373	MS.gene48389:CDS
GAGAGAGGTAGCTCAGCAAT+GGG	0.525728	8.3:+17068362	MS.gene48389:CDS
GAGATCAACCTTGACGTTCT+CGG	0.418361	8.3:-17068128	None:intergenic
GAGGAGTTTGAAATCAACGA+AGG	0.657612	8.3:+17068172	MS.gene48389:CDS
GGAGAGAGGTAGCTCAGCAA+TGG	0.520450	8.3:+17068361	MS.gene48389:CDS
GGTTGGGAAGACAAGGAGGA+AGG	0.522923	8.3:+17068339	MS.gene48389:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTGATTGCAACAACGAT+TGG	-	chr8.3:17068236-17068255	None:intergenic	30.0%
AACAACGATTGGAATGAAGA+GGG	-	chr8.3:17068225-17068244	None:intergenic	35.0%
AATGAAGAGGGGTTAAAGGT+TGG	-	chr8.3:17068213-17068232	None:intergenic	40.0%
ACAACGATTGGAATGAAGAG+GGG	-	chr8.3:17068224-17068243	None:intergenic	40.0%
CAACAACGATTGGAATGAAG+AGG	-	chr8.3:17068226-17068245	None:intergenic	40.0%
CAGCTAAAGAGAGAGTTAGA+GGG	+	chr8.3:17068429-17068448	MS.gene48389:CDS	40.0%
TCAGCAATGGGAAGATGATT+GGG	+	chr8.3:17068374-17068393	MS.gene48389:CDS	40.0%
TCAGCTAAAGAGAGAGTTAG+AGG	+	chr8.3:17068428-17068447	MS.gene48389:CDS	40.0%
TTGGAATGAAGAGGGGTTAA+AGG	-	chr8.3:17068217-17068236	None:intergenic	40.0%
AAAACCTTCCGAGAACGTCA+AGG	+	chr8.3:17068120-17068139	MS.gene48389:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	17068106	17068470	17068106	ID=MS.gene48389
chr8.3	mRNA	17068106	17068470	17068106	ID=MS.gene48389.t1;Parent=MS.gene48389
chr8.3	exon	17068106	17068193	17068106	ID=MS.gene48389.t1.exon1;Parent=MS.gene48389.t1
chr8.3	CDS	17068106	17068193	17068106	ID=cds.MS.gene48389.t1;Parent=MS.gene48389.t1
chr8.3	exon	17068340	17068470	17068340	ID=MS.gene48389.t1.exon2;Parent=MS.gene48389.t1
chr8.3	CDS	17068340	17068470	17068340	ID=cds.MS.gene48389.t1;Parent=MS.gene48389.t1

Gene Sequence	>MS.gene48389 ATGGCAACCGAGCCAAAACCTTCCGAGAACGTCAAGGTTGATCTCTTTGAAGACGACGACGAGTTCGAGGAGTTTGAAATCAACGAAGGTAACTTCAAATCGTTCCAACCTTTAACCCCTCTTCATTCCAATCGTTGTTGCAATCAATTTCAGCTTCATTCAATTTCGATCCAGATTTGAATTCATGTTAGTAGTTTCTTATTGTTTATTTTTGCAATCTTATGTAACTTGCAGGTTGGGAAGACAAGGAGGAAGGGAGAGAGGTAGCTCAGCAATGGGAAGATGATTGGGATGATGATGATGTTAGTGATGATTTCTCTCTTCAGCTAAAGAGAGAGTTAGAGGGCAATGCTGAGAAGAAATAA
Protein sequence	>MS.gene48389.t1 MATEPKPSENVKVDLFEDDDEFEEFEINEGWEDKEEGREVAQQWEDDWDDDDVSDDFSLQLKRELEGNAEKK