AlfalfaGEDB | MS.gene70613

M. sativa cultivar XinJiangDaYe / MS.gene70613

KEGG: K10881
GO: GO:0005575 GO:0006405 GO:0006406 GO:0006810 GO:0006913 GO:0008150 GO:0008541 GO:0009987 GO:0015931 GO:0016043 GO:0022607 GO:0032991 GO:0034622 GO:0043248 GO:0043933 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0065003 GO:0071702 GO:0071705 GO:0071840
PFAM: PF05160.16

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70613.t1	XP_013461011.1	100	73	0	0	1	73	1	73	9.20E-08	65.9

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70613.t1	I3SYL1	100.0	73	0	0	1	73	1	73	6.6e-08	65.9

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049140	MS.gene70613	0.82599	3.47E-54	-1.69E-46
MS.gene049166	MS.gene70613	0.814269	1.68E-51	-1.69E-46
MS.gene049756	MS.gene70613	0.84185	3.70E-58	-1.69E-46
MS.gene049861	MS.gene70613	0.818856	1.58E-52	-1.69E-46
MS.gene050114	MS.gene70613	0.834667	2.62E-56	-1.69E-46
MS.gene050277	MS.gene70613	0.849222	3.71E-60	-1.69E-46
MS.gene050303	MS.gene70613	0.852224	5.31E-61	-1.69E-46
MS.gene050317	MS.gene70613	0.850986	1.19E-60	-1.69E-46
MS.gene050320	MS.gene70613	0.830347	3.09E-55	-1.69E-46
MS.gene051003	MS.gene70613	0.805522	1.28E-49	-1.69E-46

Showing 1 to 10 of 72 entries

Previous1 2 3 4 5…8Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene011376	MS.gene70613	PPI
MS.gene06729	MS.gene70613	PPI
MS.gene06946	MS.gene70613	PPI
MS.gene28454	MS.gene70613	PPI
MS.gene32974	MS.gene70613	PPI
MS.gene40486	MS.gene70613	PPI
MS.gene48400	MS.gene70613	PPI
MS.gene58134	MS.gene70613	PPI
MS.gene67460	MS.gene70613	PPI
MS.gene70613	MS.gene058061	PPI

Showing 1 to 10 of 60 entries

Previous1 2 3 4 5 6Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70613.t1	MTR_3g078130	100.000	73	0	0	1	73	1	73	4.87e-44	136

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70613.t1	AT1G64750	76.712	73	16	1	1	72	1	73	3.24e-11	53.5
MS.gene70613.t1	AT1G64750	76.712	73	16	1	1	72	1	73	3.24e-11	53.5

Showing 1 to 2 of 2 entries

Previous1Next

Find 17 sgRNAs with CRISPR-Local

Find 58 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACTTGCAGAGTGGGATGACA+TGG	0.578383	3.1:-64136057	MS.gene70613:intron
AGAAGTAACTCAACAATGGG+AGG	0.631574	3.1:-64136024	MS.gene70613:CDS
AGCCTTTGCTTCAGTCGCCA+TGG	0.560336	3.1:+64137124	None:intergenic
AGTGGGATGACATGGAGGAA+GGG	0.591985	3.1:-64136049	MS.gene70613:CDS
ATCCATGGCGACTGAAGCAA+AGG	0.576258	3.1:-64137126	None:intergenic
ATTTCTCTGTTCAGCTGAGA+AGG	0.461195	3.1:-64135971	MS.gene70613:CDS
CTCAACAATGGGAGGATGAT+TGG	0.329365	3.1:-64136016	MS.gene70613:CDS
GAAAGAAGTAACTCAACAAT+GGG	0.498445	3.1:-64136027	MS.gene70613:CDS
GAAGAGTTTGAAATCAATGA+AGG	0.502774	3.1:-64137053	MS.gene70613:intron
GAGTGGGATGACATGGAGGA+AGG	0.532354	3.1:-64136050	MS.gene70613:CDS

Showing 1 to 10 of 17 entries

Previous1 2Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGCAAAGATAATTGCATCA+GGG	+	chr3.1:64136060-64136079	None:intergenic	30.0%
ACAGCACTTATATACTAGAT+AGG	+	chr3.1:64136280-64136299	None:intergenic	30.0%
ATTATGCATGAACACTTCTA+GGG	-	chr3.1:64136797-64136816	MS.gene70613:intron	30.0%
CAAATTACATGATTGGGTTA+TGG	+	chr3.1:64136486-64136505	None:intergenic	30.0%
GAAAGAAGTAACTCAACAAT+GGG	-	chr3.1:64137036-64137055	MS.gene70613:intron	30.0%
GCTGCATCATTTATATAATC+AGG	+	chr3.1:64136635-64136654	None:intergenic	30.0%
GTTCATGCATAATGAGAAAT+AGG	+	chr3.1:64136790-64136809	None:intergenic	30.0%
TTTCTTGACGACTTGAAATT+AGG	-	chr3.1:64136908-64136927	MS.gene70613:intron	30.0%
ACATTAGATTGTGAGTGCAA+TGG	+	chr3.1:64136950-64136969	None:intergenic	35.0%
ATACACGAAATAAAGTGGTG+AGG	+	chr3.1:64136528-64136547	None:intergenic	35.0%

Showing 1 to 10 of 58 entries

Previous1 2 3 4 5 6Next

Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	64135941	64137144	64135941	ID=MS.gene70613
chr3.1	mRNA	64135941	64137144	64135941	ID=MS.gene70613.t1;Parent=MS.gene70613
chr3.1	exon	64137054	64137144	64137054	ID=MS.gene70613.t1.exon1;Parent=MS.gene70613.t1
chr3.1	CDS	64137054	64137144	64137054	ID=cds.MS.gene70613.t1;Parent=MS.gene70613.t1
chr3.1	exon	64135941	64136071	64135941	ID=MS.gene70613.t1.exon2;Parent=MS.gene70613.t1
chr3.1	CDS	64135941	64136071	64135941	ID=cds.MS.gene70613.t1;Parent=MS.gene70613.t1

Gene Sequence

>MS.gene70613

ATGGCGACTGAAGCAAAGGCTGTGACCGAGGATGTCAAGATCGATCTATTCGAAGACGATGATGAGTTCGAAGAGTTTGAAATCAATGAAGGTATGAATCAGTAATCCCGTTTCTTCCCTGATGCAATTATCTTTGCTTCTGTTTTAGGTTTACATTTAGTTAAGTGCTCCTAAGAAATTTTCAGTGATGTTATCATCAAATGATTTATAAGTTATATTCATTAGTTTGCTTCCGTGGAAGAAACGAATTAGGATTTCATCGCGTATTGTTGCACATTTGAGCTAGACTTTGTGTGTTTGGCATTCAATTAATTACGGGAGGTTATGAAAATTTAACCTATCTAGTATATAAGTGCTGTTTGGATTTGAGTAACATGAACATTTGTTAGACTGTTTGGGAGAACTTATGGAAACAACTTATAACTTATATGAAAATAGTTTGAATTTATTTTATGCTTTGTTATAAAAATTGCTTATACATAAGCACTTATTTGGTAAGCGCTTGTGCTATAAGCACTTAATTAATTAAGCTGTATGTCCAACCATAACCCAATCATGTAATTTGAAACTTATTTGATACTTCACCTCACCACTTTATTTCGTGTATGAAATAATATGATATTTAAATATACATATCTACTATTAAATCATATATACTTGCAAATGTCTAAACTTTTATATACATTATTGTCCTGATTATATAAATGATGCAGCATTTAGATTTGCTAGATTCACGTTGTACACAGCGTTAATGAAGATGTAAGTTTGCTAATTTTTTGTGCGTGTGTCTCACAGTGCATGCAAACTGTAATTTTATGCCACTACTCTCTTCTCATGGGTGTTAATCCTATTTCTCATTATGCATGAACACTTCTAGGGCGAAAATTATAGGACTTATTTAATTGCTTGAATCTCATTTAGTTTGATTGGCATTTGTATGTTAATTGGCTTCACTGCCTATCCAACTTTTCTTGACGACTTGAAATTAGGAGGTTTTGGATTTCTGCCATTGCACTCACAATCTAATGTTGCTAACTATTTCTTTTTGCGCTTCTTTGTTTTACAACTTGCAGAGTGGGATGACATGGAGGAAGGGAAAGAAGTAACTCAACAATGGGAGGATGATTGGGATGATGATGATGTTAGCGATGATTTCTCTGTTCAGCTGAGAAGGGAGTTGGAGAAGACTACTGATAAGAATTAA

Protein sequence

>MS.gene70613.t1

MATEAKAVTEDVKIDLFEDDDEFEEFEINEEWDDMEEGKEVTQQWEDDWDDDDVSDDFSVQLRRELEKTTDKN