Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09947.t1 | XP_003611259.1 | 98.1 | 320 | 5 | 1 | 1 | 319 | 1 | 320 | 1.60E-157 | 565.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09947.t1 | Q42374 | 66.6 | 320 | 96 | 4 | 1 | 319 | 1 | 310 | 6.5e-99 | 362.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09947.t1 | G7KG89 | 98.1 | 320 | 5 | 1 | 1 | 319 | 1 | 320 | 1.2e-157 | 565.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049328 | MS.gene09947 | 0.830754 | 2.46E-55 | -1.69E-46 |
| MS.gene049418 | MS.gene09947 | 0.809246 | 2.08E-50 | -1.69E-46 |
| MS.gene04985 | MS.gene09947 | 0.80316 | 3.98E-49 | -1.69E-46 |
| MS.gene050297 | MS.gene09947 | 0.822459 | 2.34E-53 | -1.69E-46 |
| MS.gene050310 | MS.gene09947 | 0.82763 | 1.41E-54 | -1.69E-46 |
| MS.gene050648 | MS.gene09947 | 0.813072 | 3.08E-51 | -1.69E-46 |
| MS.gene050901 | MS.gene09947 | 0.814281 | 1.67E-51 | -1.69E-46 |
| MS.gene051478 | MS.gene09947 | 0.837117 | 6.28E-57 | -1.69E-46 |
| MS.gene05157 | MS.gene09947 | 0.807644 | 4.57E-50 | -1.69E-46 |
| MS.gene051720 | MS.gene09947 | 0.808623 | 2.83E-50 | -1.69E-46 |
| MS.gene052151 | MS.gene09947 | 0.801428 | 9.05E-49 | -1.69E-46 |
| MS.gene052732 | MS.gene09947 | 0.83455 | 2.81E-56 | -1.69E-46 |
| MS.gene053143 | MS.gene09947 | 0.813147 | 2.97E-51 | -1.69E-46 |
| MS.gene053144 | MS.gene09947 | 0.843172 | 1.65E-58 | -1.69E-46 |
| MS.gene053171 | MS.gene09947 | 0.804462 | 2.14E-49 | -1.69E-46 |
| MS.gene053536 | MS.gene09947 | 0.807854 | 4.12E-50 | -1.69E-46 |
| MS.gene053538 | MS.gene09947 | 0.804113 | 2.52E-49 | -1.69E-46 |
| MS.gene053581 | MS.gene09947 | 0.827297 | 1.69E-54 | -1.69E-46 |
| MS.gene054584 | MS.gene09947 | 0.830097 | 3.56E-55 | -1.69E-46 |
| MS.gene054824 | MS.gene09947 | 0.816091 | 6.61E-52 | -1.69E-46 |
| MS.gene055465 | MS.gene09947 | 0.836588 | 8.57E-57 | -1.69E-46 |
| MS.gene055466 | MS.gene09947 | 0.807413 | 5.12E-50 | -1.69E-46 |
| MS.gene055467 | MS.gene09947 | 0.814125 | 1.81E-51 | -1.69E-46 |
| MS.gene055468 | MS.gene09947 | 0.80122 | 9.98E-49 | -1.69E-46 |
| MS.gene055469 | MS.gene09947 | 0.830464 | 2.89E-55 | -1.69E-46 |
| MS.gene055537 | MS.gene09947 | 0.842997 | 1.84E-58 | -1.69E-46 |
| MS.gene055764 | MS.gene09947 | 0.822768 | 1.99E-53 | -1.69E-46 |
| MS.gene056169 | MS.gene09947 | 0.823235 | 1.54E-53 | -1.69E-46 |
| MS.gene058087 | MS.gene09947 | 0.805794 | 1.12E-49 | -1.69E-46 |
| MS.gene058649 | MS.gene09947 | 0.804875 | 1.75E-49 | -1.69E-46 |
| MS.gene05870 | MS.gene09947 | 0.812172 | 4.85E-51 | -1.69E-46 |
| MS.gene05894 | MS.gene09947 | 0.802264 | 6.09E-49 | -1.69E-46 |
| MS.gene059300 | MS.gene09947 | 0.829463 | 5.08E-55 | -1.69E-46 |
| MS.gene060519 | MS.gene09947 | 0.843859 | 1.08E-58 | -1.69E-46 |
| MS.gene06057 | MS.gene09947 | 0.854301 | 1.35E-61 | -1.69E-46 |
| MS.gene060884 | MS.gene09947 | 0.810054 | 1.39E-50 | -1.69E-46 |
| MS.gene060886 | MS.gene09947 | 0.802286 | 6.03E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene77217 | MS.gene09947 | PPI |
| MS.gene01756 | MS.gene09947 | PPI |
| MS.gene035217 | MS.gene09947 | PPI |
| MS.gene65117 | MS.gene09947 | PPI |
| MS.gene66057 | MS.gene09947 | PPI |
| MS.gene052542 | MS.gene09947 | PPI |
| MS.gene01347 | MS.gene09947 | PPI |
| MS.gene066610 | MS.gene09947 | PPI |
| MS.gene33736 | MS.gene09947 | PPI |
| MS.gene99119 | MS.gene09947 | PPI |
| MS.gene50283 | MS.gene09947 | PPI |
| MS.gene01343 | MS.gene09947 | PPI |
| MS.gene32192 | MS.gene09947 | PPI |
| MS.gene047508 | MS.gene09947 | PPI |
| MS.gene78212 | MS.gene09947 | PPI |
| MS.gene002374 | MS.gene09947 | PPI |
| MS.gene99067 | MS.gene09947 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09947.t1 | MTR_5g012010 | 98.438 | 320 | 4 | 1 | 1 | 319 | 1 | 320 | 0.0 | 637 |
| MS.gene09947.t1 | MTR_2g012270 | 47.619 | 315 | 147 | 3 | 1 | 315 | 1 | 297 | 1.89e-105 | 310 |
| MS.gene09947.t1 | MTR_4g090900 | 50.000 | 296 | 129 | 4 | 1 | 295 | 1 | 278 | 3.30e-99 | 295 |
| MS.gene09947.t1 | MTR_1g056550 | 42.617 | 298 | 155 | 3 | 1 | 295 | 1 | 285 | 3.61e-85 | 259 |
| MS.gene09947.t1 | MTR_1g056560 | 48.583 | 247 | 126 | 1 | 49 | 295 | 44 | 289 | 1.12e-83 | 256 |
| MS.gene09947.t1 | MTR_2g088700 | 44.025 | 318 | 162 | 5 | 1 | 316 | 1 | 304 | 2.53e-80 | 246 |
| MS.gene09947.t1 | MTR_5g020670 | 46.823 | 299 | 131 | 7 | 1 | 294 | 1 | 276 | 2.68e-77 | 238 |
| MS.gene09947.t1 | MTR_7g106420 | 45.306 | 245 | 133 | 1 | 53 | 297 | 31 | 274 | 2.96e-76 | 236 |
| MS.gene09947.t1 | MTR_2g088700 | 44.781 | 297 | 148 | 5 | 1 | 295 | 1 | 283 | 5.91e-76 | 235 |
| MS.gene09947.t1 | MTR_6g028140 | 41.077 | 297 | 158 | 3 | 1 | 297 | 1 | 280 | 9.15e-73 | 227 |
| MS.gene09947.t1 | MTR_8g073900 | 36.813 | 182 | 75 | 5 | 1 | 178 | 1 | 146 | 2.05e-22 | 91.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09947.t1 | AT1G08560 | 65.000 | 320 | 101 | 5 | 1 | 319 | 1 | 310 | 1.38e-132 | 379 |
| MS.gene09947.t1 | AT1G61290 | 47.923 | 313 | 141 | 4 | 1 | 311 | 1 | 293 | 2.31e-102 | 302 |
| MS.gene09947.t1 | AT1G61290 | 47.923 | 313 | 141 | 4 | 1 | 311 | 1 | 293 | 2.31e-102 | 302 |
| MS.gene09947.t1 | AT4G03330 | 47.619 | 315 | 150 | 3 | 1 | 315 | 1 | 300 | 1.41e-93 | 280 |
| MS.gene09947.t1 | AT1G11250 | 47.651 | 298 | 127 | 5 | 1 | 295 | 1 | 272 | 2.94e-90 | 271 |
| MS.gene09947.t1 | AT3G11820 | 50.192 | 261 | 129 | 1 | 35 | 295 | 29 | 288 | 4.06e-87 | 265 |
| MS.gene09947.t1 | AT3G11820 | 52.227 | 247 | 117 | 1 | 49 | 295 | 12 | 257 | 7.20e-87 | 263 |
| MS.gene09947.t1 | AT3G52400 | 43.289 | 298 | 159 | 3 | 1 | 297 | 1 | 289 | 2.10e-79 | 245 |
| MS.gene09947.t1 | AT2G18260 | 38.095 | 315 | 184 | 4 | 1 | 315 | 1 | 304 | 8.63e-70 | 219 |
| MS.gene09947.t1 | AT2G18260 | 38.095 | 315 | 184 | 4 | 1 | 315 | 1 | 304 | 8.63e-70 | 219 |
| MS.gene09947.t1 | AT3G03800 | 42.642 | 265 | 151 | 1 | 53 | 317 | 38 | 301 | 8.05e-68 | 214 |
| MS.gene09947.t1 | AT3G03800 | 42.642 | 265 | 151 | 1 | 53 | 317 | 38 | 301 | 8.05e-68 | 214 |
| MS.gene09947.t1 | AT5G08080 | 43.729 | 295 | 149 | 4 | 1 | 295 | 1 | 278 | 1.01e-66 | 211 |
| MS.gene09947.t1 | AT5G08080 | 43.729 | 295 | 149 | 4 | 1 | 295 | 1 | 278 | 1.01e-66 | 211 |
| MS.gene09947.t1 | AT5G08080 | 43.434 | 297 | 158 | 6 | 1 | 295 | 1 | 289 | 1.22e-65 | 209 |
| MS.gene09947.t1 | AT5G08080 | 39.171 | 217 | 115 | 4 | 1 | 217 | 1 | 200 | 5.38e-32 | 119 |
| MS.gene09947.t1 | AT5G08080 | 39.171 | 217 | 115 | 4 | 1 | 217 | 1 | 200 | 5.38e-32 | 119 |
Find 46 sgRNAs with CRISPR-Local
Find 65 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGATTGAGAAGAGTTTAT+TGG | 0.159342 | 5.2:-4471071 | MS.gene09947:CDS |
| GGAGATGATGAAAGTTTCTT+AGG | 0.183110 | 5.2:-4471172 | MS.gene09947:CDS |
| GGAGCTTATGATGGAGTTTC+AGG | 0.211805 | 5.2:-4471559 | MS.gene09947:intron |
| TGAAGAAAGCAAAATGTATT+AGG | 0.253459 | 5.2:-4471707 | MS.gene09947:CDS |
| GCCATTAGTAACAGCAATTC+TGG | 0.268624 | 5.2:+4471599 | None:intergenic |
| AACTGATATGAATCTGTTCT+TGG | 0.361438 | 5.2:-4471880 | MS.gene09947:CDS |
| AAGATCTTCACTGACCCATT+TGG | 0.382232 | 5.2:-4471904 | MS.gene09947:CDS |
| AGAGAAAGTAAGAACAGAAA+TGG | 0.386214 | 5.2:-4471850 | MS.gene09947:CDS |
| ACATGGAAGAGGAAAGGTTC+TGG | 0.392183 | 5.2:-4471134 | MS.gene09947:CDS |
| TAGGACTCAACTTGAAGAAA+TGG | 0.395349 | 5.2:-4471688 | MS.gene09947:CDS |
| ACCAGAATTGCTGTTACTAA+TGG | 0.398063 | 5.2:-4471600 | MS.gene09947:CDS |
| GTATATTACAACAGGGGCTT+AGG | 0.403888 | 5.2:-4471297 | MS.gene09947:intron |
| ATTCTGGTTCTATAAATTGC+TGG | 0.415838 | 5.2:+4471615 | None:intergenic |
| GATTCATATCAGTTTCCAAA+TGG | 0.439557 | 5.2:+4471889 | None:intergenic |
| GATGAAGTTGATTTAGAAGC+TGG | 0.444831 | 5.2:-4471957 | MS.gene09947:CDS |
| GCAGGAAGTGGATGTGCATT+GGG | 0.446829 | 5.2:-4470898 | MS.gene09947:CDS |
| CTGCTGAAACTCACTACAAT+GGG | 0.453019 | 5.2:+4470836 | None:intergenic |
| GCTGCTAATAGAAGACTCTC+TGG | 0.458709 | 5.2:-4471654 | MS.gene09947:CDS |
| ATTGAGAAGATAATTTCAAA+TGG | 0.459387 | 5.2:-4471193 | MS.gene09947:CDS |
| GCTTCTCATTATGTTAAAGA+TGG | 0.464968 | 5.2:-4470962 | MS.gene09947:CDS |
| GAGATGATGAAAGTTTCTTA+GGG | 0.469669 | 5.2:-4471171 | MS.gene09947:CDS |
| ATTCATATCAGTTTCCAAAT+GGG | 0.473520 | 5.2:+4471890 | None:intergenic |
| AGCAGGAAGTGGATGTGCAT+TGG | 0.476019 | 5.2:-4470899 | MS.gene09947:CDS |
| AGAAGGTATTATACAGTGAC+AGG | 0.477649 | 5.2:-4471238 | MS.gene09947:CDS |
| ATCAGAAAAGTAGCAGGAAG+TGG | 0.480407 | 5.2:-4470910 | MS.gene09947:CDS |
| AACAGTATCAGAAAAGTAGC+AGG | 0.504319 | 5.2:-4470916 | MS.gene09947:CDS |
| TATGAATCTGTTCTTGGAAG+AGG | 0.513466 | 5.2:-4471874 | MS.gene09947:CDS |
| GAAACTCAAGGAGCTTATGA+TGG | 0.521896 | 5.2:-4471568 | MS.gene09947:CDS |
| GATGGTACAAAGAATCTTCA+CGG | 0.525784 | 5.2:-4470944 | MS.gene09947:CDS |
| GAGAAAGTAAGAACAGAAAT+GGG | 0.532673 | 5.2:-4471849 | MS.gene09947:CDS |
| AGTGAATACAAAGAAACAGT+AGG | 0.536819 | 5.2:-4471262 | MS.gene09947:CDS |
| TGATGAAAGTTTCTTAGGGA+AGG | 0.540453 | 5.2:-4471167 | MS.gene09947:CDS |
| AGACTCTCTGGACTTAAAGA+TGG | 0.542560 | 5.2:-4471642 | MS.gene09947:CDS |
| GCAATACAAGAACATGGAAG+AGG | 0.566682 | 5.2:-4471145 | MS.gene09947:CDS |
| ACTGCTGAAACTCACTACAA+TGG | 0.567938 | 5.2:+4470835 | None:intergenic |
| TGAAGCTTTGAAAGCACTGA+GGG | 0.568866 | 5.2:-4471760 | MS.gene09947:CDS |
| GTGAATACAAAGAAACAGTA+GGG | 0.579417 | 5.2:-4471261 | MS.gene09947:CDS |
| ACAAAGAAACAGTAGGGAGA+AGG | 0.588838 | 5.2:-4471255 | MS.gene09947:CDS |
| TGGCTTGCGTAAGAAACTCA+AGG | 0.596215 | 5.2:-4471580 | MS.gene09947:CDS |
| ACAAGAACATGGAAGAGGAA+AGG | 0.606969 | 5.2:-4471140 | MS.gene09947:CDS |
| GGGAAGGCAATACAAGAACA+TGG | 0.609551 | 5.2:-4471151 | MS.gene09947:CDS |
| AGGAAAGGTTCTGGAAACTG+TGG | 0.665351 | 5.2:-4471125 | MS.gene09947:CDS |
| GAAGGTATTATACAGTGACA+GGG | 0.682716 | 5.2:-4471237 | MS.gene09947:CDS |
| CTGAAGCTTTGAAAGCACTG+AGG | 0.693842 | 5.2:-4471761 | MS.gene09947:CDS |
| GCTGTTATGGTTGAAGCACA+AGG | 0.705464 | 5.2:-4471022 | MS.gene09947:CDS |
| AAGGTATTATACAGTGACAG+GGG | 0.727159 | 5.2:-4471236 | MS.gene09947:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAATTTATGTATCAATTTTA+AGG | - | chr5.2:4471379-4471398 | MS.gene09947:intron | 15.0% |
| !! | ATTGAGAAGATAATTTCAAA+TGG | - | chr5.2:4471656-4471675 | MS.gene09947:CDS | 20.0% |
| !!! | TCATCAAATATTTTTGGATA+TGG | - | chr5.2:4471805-4471824 | MS.gene09947:CDS | 20.0% |
| !!! | TTTTTTTAGATCAACATAGT+TGG | + | chr5.2:4470860-4470879 | None:intergenic | 20.0% |
| ! | AAACCTTGTATATTACAACA+GGG | - | chr5.2:4471545-4471564 | MS.gene09947:intron | 25.0% |
| ! | ATATTTGTGTAAGAAACTCA+TGG | - | chr5.2:4471414-4471433 | MS.gene09947:intron | 25.0% |
| ! | ATTCATATCAGTTTCCAAAT+GGG | + | chr5.2:4470962-4470981 | None:intergenic | 25.0% |
| ! | TGAAGAAAGCAAAATGTATT+AGG | - | chr5.2:4471142-4471161 | MS.gene09947:CDS | 25.0% |
| !! | GATTATACTTTTGCTTATTC+TGG | - | chr5.2:4471973-4471992 | MS.gene09947:CDS | 25.0% |
| !! | GGAACTTCATCAAATATTTT+TGG | - | chr5.2:4471799-4471818 | MS.gene09947:CDS | 25.0% |
| !!! | ACAATGATGCTTTTTAGAAA+AGG | + | chr5.2:4471458-4471477 | None:intergenic | 25.0% |
| AACCTTGTATATTACAACAG+GGG | - | chr5.2:4471546-4471565 | MS.gene09947:intron | 30.0% | |
| AACTGATATGAATCTGTTCT+TGG | - | chr5.2:4470969-4470988 | MS.gene09947:CDS | 30.0% | |
| AGAGAAAGTAAGAACAGAAA+TGG | - | chr5.2:4470999-4471018 | MS.gene09947:CDS | 30.0% | |
| AGAGATTGAGAAGAGTTTAT+TGG | - | chr5.2:4471778-4471797 | MS.gene09947:CDS | 30.0% | |
| AGTGAATACAAAGAAACAGT+AGG | - | chr5.2:4471587-4471606 | MS.gene09947:CDS | 30.0% | |
| GAAACCTTGTATATTACAAC+AGG | - | chr5.2:4471544-4471563 | MS.gene09947:intron | 30.0% | |
| GAGAAAGTAAGAACAGAAAT+GGG | - | chr5.2:4471000-4471019 | MS.gene09947:CDS | 30.0% | |
| GAGATGATGAAAGTTTCTTA+GGG | - | chr5.2:4471678-4471697 | MS.gene09947:CDS | 30.0% | |
| GATTCATATCAGTTTCCAAA+TGG | + | chr5.2:4470963-4470982 | None:intergenic | 30.0% | |
| GCTTCTCATTATGTTAAAGA+TGG | - | chr5.2:4471887-4471906 | MS.gene09947:CDS | 30.0% | |
| GTGAATACAAAGAAACAGTA+GGG | - | chr5.2:4471588-4471607 | MS.gene09947:CDS | 30.0% | |
| !! | ATTCTGGTTCTATAAATTGC+TGG | + | chr5.2:4471237-4471256 | None:intergenic | 30.0% |
| !! | ATTTTTGGATATGGCTGTTA+TGG | - | chr5.2:4471814-4471833 | MS.gene09947:CDS | 30.0% |
| !!! | TCTTCTGGTTTTTTTCTTTC+TGG | - | chr5.2:4471333-4471352 | MS.gene09947:intron | 30.0% |
| AACAGTATCAGAAAAGTAGC+AGG | - | chr5.2:4471933-4471952 | MS.gene09947:CDS | 35.0% | |
| AACCAGAAGAGAAATTGACA+AGG | + | chr5.2:4471323-4471342 | None:intergenic | 35.0% | |
| ACCAGAAGAGAAATTGACAA+GGG | + | chr5.2:4471322-4471341 | None:intergenic | 35.0% | |
| GATGGTACAAAGAATCTTCA+CGG | - | chr5.2:4471905-4471924 | MS.gene09947:CDS | 35.0% | |
| GGAGATGATGAAAGTTTCTT+AGG | - | chr5.2:4471677-4471696 | MS.gene09947:CDS | 35.0% | |
| TAGGACTCAACTTGAAGAAA+TGG | - | chr5.2:4471161-4471180 | MS.gene09947:CDS | 35.0% | |
| TATGAATCTGTTCTTGGAAG+AGG | - | chr5.2:4470975-4470994 | MS.gene09947:CDS | 35.0% | |
| TGAAGCACAAGGTGAAAAAA+TGG | - | chr5.2:4471838-4471857 | MS.gene09947:CDS | 35.0% | |
| TGATGAAAGTTTCTTAGGGA+AGG | - | chr5.2:4471682-4471701 | MS.gene09947:CDS | 35.0% | |
| ! | AAGGTATTATACAGTGACAG+GGG | - | chr5.2:4471613-4471632 | MS.gene09947:CDS | 35.0% |
| ! | ACCAGAATTGCTGTTACTAA+TGG | - | chr5.2:4471249-4471268 | MS.gene09947:CDS | 35.0% |
| ! | GATGAAGTTGATTTAGAAGC+TGG | - | chr5.2:4470892-4470911 | MS.gene09947:CDS | 35.0% |
| !! | AGAAGGTATTATACAGTGAC+AGG | - | chr5.2:4471611-4471630 | MS.gene09947:CDS | 35.0% |
| !! | GAAGGTATTATACAGTGACA+GGG | - | chr5.2:4471612-4471631 | MS.gene09947:CDS | 35.0% |
| AAGATCTTCACTGACCCATT+TGG | - | chr5.2:4470945-4470964 | MS.gene09947:CDS | 40.0% | |
| ACAAAGAAACAGTAGGGAGA+AGG | - | chr5.2:4471594-4471613 | MS.gene09947:CDS | 40.0% | |
| ACAAGAACATGGAAGAGGAA+AGG | - | chr5.2:4471709-4471728 | MS.gene09947:CDS | 40.0% | |
| ACCCTTGTCAATTTCTCTTC+TGG | - | chr5.2:4471318-4471337 | MS.gene09947:intron | 40.0% | |
| ACTGCTGAAACTCACTACAA+TGG | + | chr5.2:4472017-4472036 | None:intergenic | 40.0% | |
| AGACTCTCTGGACTTAAAGA+TGG | - | chr5.2:4471207-4471226 | MS.gene09947:CDS | 40.0% | |
| AGCCCCTGTTGTAATATACA+AGG | + | chr5.2:4471551-4471570 | None:intergenic | 40.0% | |
| ATCAGAAAAGTAGCAGGAAG+TGG | - | chr5.2:4471939-4471958 | MS.gene09947:CDS | 40.0% | |
| CTGCTGAAACTCACTACAAT+GGG | + | chr5.2:4472016-4472035 | None:intergenic | 40.0% | |
| GAAACTCAAGGAGCTTATGA+TGG | - | chr5.2:4471281-4471300 | MS.gene09947:CDS | 40.0% | |
| GCAATACAAGAACATGGAAG+AGG | - | chr5.2:4471704-4471723 | MS.gene09947:CDS | 40.0% | |
| GCCATTAGTAACAGCAATTC+TGG | + | chr5.2:4471253-4471272 | None:intergenic | 40.0% | |
| GTATATTACAACAGGGGCTT+AGG | - | chr5.2:4471552-4471571 | MS.gene09947:intron | 40.0% | |
| !! | GAAGCTGGTCTTCAAAAACA+AGG | - | chr5.2:4470907-4470926 | MS.gene09947:CDS | 40.0% |
| !! | TGAAGCTTTGAAAGCACTGA+GGG | - | chr5.2:4471089-4471108 | MS.gene09947:CDS | 40.0% |
| ACATGGAAGAGGAAAGGTTC+TGG | - | chr5.2:4471715-4471734 | MS.gene09947:CDS | 45.0% | |
| GCTGCTAATAGAAGACTCTC+TGG | - | chr5.2:4471195-4471214 | MS.gene09947:CDS | 45.0% | |
| GCTGTTATGGTTGAAGCACA+AGG | - | chr5.2:4471827-4471846 | MS.gene09947:CDS | 45.0% | |
| GGGAAGGCAATACAAGAACA+TGG | - | chr5.2:4471698-4471717 | MS.gene09947:CDS | 45.0% | |
| ! | GGAGCTTATGATGGAGTTTC+AGG | - | chr5.2:4471290-4471309 | MS.gene09947:intron | 45.0% |
| ! | TGGCTTGCGTAAGAAACTCA+AGG | - | chr5.2:4471269-4471288 | MS.gene09947:CDS | 45.0% |
| !! | AGGAAAGGTTCTGGAAACTG+TGG | - | chr5.2:4471724-4471743 | MS.gene09947:CDS | 45.0% |
| !! | CTGAAGCTTTGAAAGCACTG+AGG | - | chr5.2:4471088-4471107 | MS.gene09947:CDS | 45.0% |
| !! | GCTGGTCTTCAAAAACAAGG+TGG | - | chr5.2:4470910-4470929 | MS.gene09947:CDS | 45.0% |
| AGCAGGAAGTGGATGTGCAT+TGG | - | chr5.2:4471950-4471969 | MS.gene09947:CDS | 50.0% | |
| GCAGGAAGTGGATGTGCATT+GGG | - | chr5.2:4471951-4471970 | MS.gene09947:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 4470829 | 4472042 | 4470829 | ID=MS.gene09947 |
| chr5.2 | mRNA | 4470829 | 4472042 | 4470829 | ID=MS.gene09947.t1;Parent=MS.gene09947 |
| chr5.2 | exon | 4471560 | 4472042 | 4471560 | ID=MS.gene09947.t1.exon1;Parent=MS.gene09947.t1 |
| chr5.2 | CDS | 4471560 | 4472042 | 4471560 | ID=cds.MS.gene09947.t1;Parent=MS.gene09947.t1 |
| chr5.2 | exon | 4470829 | 4471305 | 4470829 | ID=MS.gene09947.t1.exon2;Parent=MS.gene09947.t1 |
| chr5.2 | CDS | 4470829 | 4471305 | 4470829 | ID=cds.MS.gene09947.t1;Parent=MS.gene09947.t1 |
| Gene Sequence |
| Protein sequence |
