Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20077.t1 | XP_024626322.1 | 97.4 | 493 | 10 | 1 | 1 | 493 | 1 | 490 | 1.40E-237 | 832 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20077.t1 | A0A396HB66 | 97.4 | 493 | 10 | 1 | 1 | 493 | 1 | 490 | 1.0e-237 | 832.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene20077 | 0.822108 | 2.83E-53 | -1.69E-46 |
| MS.gene049350 | MS.gene20077 | 0.805369 | 1.38E-49 | -1.69E-46 |
| MS.gene049368 | MS.gene20077 | 0.807811 | 4.21E-50 | -1.69E-46 |
| MS.gene049499 | MS.gene20077 | 0.817701 | 2.88E-52 | -1.69E-46 |
| MS.gene049807 | MS.gene20077 | 0.815937 | 7.16E-52 | -1.69E-46 |
| MS.gene049983 | MS.gene20077 | 0.825257 | 5.17E-54 | -1.69E-46 |
| MS.gene050273 | MS.gene20077 | 0.80619 | 9.28E-50 | -1.69E-46 |
| MS.gene050359 | MS.gene20077 | 0.804673 | 1.93E-49 | -1.69E-46 |
| MS.gene050361 | MS.gene20077 | 0.832635 | 8.45E-56 | -1.69E-46 |
| MS.gene050414 | MS.gene20077 | 0.828861 | 7.10E-55 | -1.69E-46 |
| MS.gene050551 | MS.gene20077 | 0.812178 | 4.83E-51 | -1.69E-46 |
| MS.gene050646 | MS.gene20077 | 0.873384 | 1.53E-67 | -1.69E-46 |
| MS.gene050654 | MS.gene20077 | 0.833714 | 4.55E-56 | -1.69E-46 |
| MS.gene051234 | MS.gene20077 | 0.80373 | 3.03E-49 | -1.69E-46 |
| MS.gene051852 | MS.gene20077 | 0.811919 | 5.50E-51 | -1.69E-46 |
| MS.gene052016 | MS.gene20077 | 0.807638 | 4.58E-50 | -1.69E-46 |
| MS.gene052242 | MS.gene20077 | -0.80303 | 4.23E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene20077 | 0.841514 | 4.54E-58 | -1.69E-46 |
| MS.gene052463 | MS.gene20077 | 0.872879 | 2.26E-67 | -1.69E-46 |
| MS.gene052516 | MS.gene20077 | 0.825987 | 3.47E-54 | -1.69E-46 |
| MS.gene052609 | MS.gene20077 | 0.827755 | 1.31E-54 | -1.69E-46 |
| MS.gene052932 | MS.gene20077 | 0.819375 | 1.20E-52 | -1.69E-46 |
| MS.gene053079 | MS.gene20077 | 0.802892 | 4.52E-49 | -1.69E-46 |
| MS.gene053456 | MS.gene20077 | 0.821808 | 3.32E-53 | -1.69E-46 |
| MS.gene05350 | MS.gene20077 | 0.818471 | 1.93E-52 | -1.69E-46 |
| MS.gene053620 | MS.gene20077 | 0.807361 | 5.25E-50 | -1.69E-46 |
| MS.gene054178 | MS.gene20077 | 0.804358 | 2.24E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene20077 | 0.819304 | 1.25E-52 | -1.69E-46 |
| MS.gene05458 | MS.gene20077 | 0.814517 | 1.48E-51 | -1.69E-46 |
| MS.gene054651 | MS.gene20077 | 0.80887 | 2.50E-50 | -1.69E-46 |
| MS.gene054709 | MS.gene20077 | 0.82655 | 2.55E-54 | -1.69E-46 |
| MS.gene055469 | MS.gene20077 | 0.806171 | 9.37E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene20077 | 0.838885 | 2.20E-57 | -1.69E-46 |
| MS.gene055724 | MS.gene20077 | 0.805231 | 1.47E-49 | -1.69E-46 |
| MS.gene055864 | MS.gene20077 | 0.817167 | 3.79E-52 | -1.69E-46 |
| MS.gene056308 | MS.gene20077 | 0.820686 | 6.02E-53 | -1.69E-46 |
| MS.gene056390 | MS.gene20077 | 0.81189 | 5.58E-51 | -1.69E-46 |
| MS.gene056480 | MS.gene20077 | 0.804086 | 2.56E-49 | -1.69E-46 |
| MS.gene056578 | MS.gene20077 | 0.805404 | 1.36E-49 | -1.69E-46 |
| MS.gene056677 | MS.gene20077 | 0.807332 | 5.32E-50 | -1.69E-46 |
| MS.gene056699 | MS.gene20077 | 0.833527 | 5.07E-56 | -1.69E-46 |
| MS.gene05686 | MS.gene20077 | 0.805972 | 1.03E-49 | -1.69E-46 |
| MS.gene057034 | MS.gene20077 | 0.80068 | 1.29E-48 | -1.69E-46 |
| MS.gene057102 | MS.gene20077 | 0.806151 | 9.46E-50 | -1.69E-46 |
| MS.gene057371 | MS.gene20077 | 0.803344 | 3.65E-49 | -1.69E-46 |
| MS.gene057919 | MS.gene20077 | 0.834431 | 3.01E-56 | -1.69E-46 |
| MS.gene058081 | MS.gene20077 | 0.817175 | 3.78E-52 | -1.69E-46 |
| MS.gene058279 | MS.gene20077 | 0.81681 | 4.56E-52 | -1.69E-46 |
| MS.gene059170 | MS.gene20077 | 0.813739 | 2.20E-51 | -1.69E-46 |
| MS.gene059439 | MS.gene20077 | 0.812222 | 4.72E-51 | -1.69E-46 |
| MS.gene059965 | MS.gene20077 | 0.837838 | 4.11E-57 | -1.69E-46 |
| MS.gene060373 | MS.gene20077 | 0.803385 | 3.58E-49 | -1.69E-46 |
| MS.gene06052 | MS.gene20077 | 0.82076 | 5.78E-53 | -1.69E-46 |
| MS.gene060932 | MS.gene20077 | 0.869053 | 4.13E-66 | -1.69E-46 |
| MS.gene060937 | MS.gene20077 | 0.817657 | 2.94E-52 | -1.69E-46 |
| MS.gene061100 | MS.gene20077 | 0.826836 | 2.18E-54 | -1.69E-46 |
| MS.gene061188 | MS.gene20077 | 0.81725 | 3.64E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20077.t1 | MTR_7g101730 | 97.149 | 491 | 11 | 1 | 1 | 491 | 1 | 488 | 0.0 | 958 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20077.t1 | AT2G37035 | 45.359 | 474 | 187 | 6 | 22 | 493 | 30 | 433 | 1.74e-125 | 373 |
Find 102 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATATTCTCTGTGGATTTC+TGG | 0.061482 | 7.2:-10833060 | MS.gene20077:CDS |
| TTGTTGCTGATAATGGAATT+AGG | 0.178046 | 7.2:-10833744 | MS.gene20077:CDS |
| GTTATGTCGCCTTGGGTTAC+TGG | 0.193809 | 7.2:-10833145 | MS.gene20077:CDS |
| GACGTTGTTCTTTGTTCTTT+TGG | 0.208614 | 7.2:-10833467 | MS.gene20077:CDS |
| TCCGATCTTGTTGCTGATAA+TGG | 0.209575 | 7.2:-10833751 | MS.gene20077:CDS |
| AATGGTAGCGTTGTTGATTT+TGG | 0.215077 | 7.2:-10833799 | MS.gene20077:CDS |
| TTTGGTTACATGGTTTCTTA+TGG | 0.235123 | 7.2:-10833098 | MS.gene20077:CDS |
| AAGAAGGAGAAGAGTGATTT+GGG | 0.240150 | 7.2:-10833568 | MS.gene20077:CDS |
| GGTTCATTATCTGTGGCTTA+TGG | 0.252653 | 7.2:-10833445 | MS.gene20077:CDS |
| AATTCCAAAGCTCCGGTTAA+TGG | 0.284429 | 7.2:-10833817 | MS.gene20077:CDS |
| GTTACATATTCGTGTGTATT+AGG | 0.289371 | 7.2:-10833400 | MS.gene20077:CDS |
| GTTCAACTACTGGTGTGGTT+TGG | 0.305022 | 7.2:-10833333 | MS.gene20077:CDS |
| CAAGGCGACATAACCGAAAA+TGG | 0.306788 | 7.2:+10833154 | None:intergenic |
| GGCTTATGGATGGGTAATTA+TGG | 0.315314 | 7.2:-10833431 | MS.gene20077:CDS |
| TTCAACTACTGGTGTGGTTT+GGG | 0.319340 | 7.2:-10833332 | MS.gene20077:CDS |
| GAAGAAGGAGAAGAGTGATT+TGG | 0.321434 | 7.2:-10833569 | MS.gene20077:CDS |
| TGTTGCTGATAATGGAATTA+GGG | 0.322052 | 7.2:-10833743 | MS.gene20077:CDS |
| TGTGGATTTCTGGGTTGCTT+TGG | 0.322485 | 7.2:-10833050 | MS.gene20077:CDS |
| AATCAACAGGGTAGGAGGTT+TGG | 0.323638 | 7.2:-10832788 | MS.gene20077:CDS |
| CTTTCCCGTCTTGACCTTGC+CGG | 0.324595 | 7.2:-10834012 | MS.gene20077:CDS |
| TATATTCTCTGTGGATTTCT+GGG | 0.335772 | 7.2:-10833059 | MS.gene20077:CDS |
| TACCATGGAGGTTTACTTCA+TGG | 0.347990 | 7.2:-10832855 | MS.gene20077:CDS |
| TGACACAGCTTGTGGGAATA+TGG | 0.355268 | 7.2:-10833240 | MS.gene20077:CDS |
| AATCCCGAATCCAAAGAAAA+TGG | 0.355440 | 7.2:+10833775 | None:intergenic |
| ATCAACAGGGTAGGAGGTTT+GGG | 0.356159 | 7.2:-10832787 | MS.gene20077:CDS |
| AGCAGCGTTAACAGCGTTAC+CGG | 0.363800 | 7.2:+10833993 | None:intergenic |
| TTTGATAAGGTGGGCTGTTA+GGG | 0.367104 | 7.2:-10833269 | MS.gene20077:CDS |
| TCAGTTGTTAATGATCTTGT+AGG | 0.382451 | 7.2:-10833364 | MS.gene20077:CDS |
| GGATTTCTGGGTTGCTTTGG+AGG | 0.384827 | 7.2:-10833047 | MS.gene20077:CDS |
| CGGAGAAGAAATCATCATCT+AGG | 0.397067 | 7.2:+10833875 | None:intergenic |
| GCTACCATTAACCGGAGCTT+TGG | 0.398706 | 7.2:+10833813 | None:intergenic |
| GAGTAGGGATGCCAATCAAC+AGG | 0.400674 | 7.2:-10832801 | MS.gene20077:CDS |
| CATTATCTGTGGCTTATGGA+TGG | 0.413722 | 7.2:-10833441 | MS.gene20077:CDS |
| CGACGACGGCGAAGAGCAGC+TGG | 0.432165 | 7.2:+10833928 | None:intergenic |
| CGTTCTTTAAGCTATTTGTT+CGG | 0.433372 | 7.2:-10833189 | MS.gene20077:CDS |
| CTAGATGATGATTTCTTCTC+CGG | 0.439591 | 7.2:-10833874 | MS.gene20077:CDS |
| TGCTTGGAAGCTGTGCTTTG+TGG | 0.441214 | 7.2:-10832941 | MS.gene20077:CDS |
| TTTCGCACCGTCGTTGAAAA+CGG | 0.444607 | 7.2:-10834087 | MS.gene20077:CDS |
| TCGTTCTGGTATCACGTTGA+AGG | 0.444992 | 7.2:-10833707 | MS.gene20077:CDS |
| AGGTTTACTTCATGGTTGCT+TGG | 0.460321 | 7.2:-10832847 | MS.gene20077:CDS |
| AGAGGGAGAGGAAAAGAAGA+AGG | 0.467869 | 7.2:-10833584 | MS.gene20077:CDS |
| CTGCGATGAGCGACCAACTA+CGG | 0.472986 | 7.2:-10834212 | None:intergenic |
| GTTTGGGCAGAGGGAAATTG+AGG | 0.473811 | 7.2:-10832771 | MS.gene20077:CDS |
| GGGTAGGAGGTTTGGGCAGA+GGG | 0.480015 | 7.2:-10832780 | MS.gene20077:CDS |
| AGGGTAGGAGGTTTGGGCAG+AGG | 0.486226 | 7.2:-10832781 | MS.gene20077:CDS |
| TCAACAACGCTACCATTAAC+CGG | 0.488618 | 7.2:+10833805 | None:intergenic |
| AGTAAGGAGATTGTGAAGGA+AGG | 0.489890 | 7.2:-10833010 | MS.gene20077:CDS |
| AAACCTCCTACCCTGTTGAT+TGG | 0.504079 | 7.2:+10832790 | None:intergenic |
| GGAAGGTTTAGTTCAACTAC+TGG | 0.504708 | 7.2:-10833343 | MS.gene20077:CDS |
| CATGGTAGACTGAAACATCT+TGG | 0.507976 | 7.2:+10832871 | None:intergenic |
| GAGAAGAGTGATTTGGGGAA+TGG | 0.511026 | 7.2:-10833562 | MS.gene20077:CDS |
| ACGGGAAAGAAGAGATTTAA+CGG | 0.513314 | 7.2:+10834026 | None:intergenic |
| GAGAAATGTGAAGAGATTTG+AGG | 0.514193 | 7.2:+10834134 | None:intergenic |
| CGTTTCATTTCCTTCGTCGA+CGG | 0.515738 | 7.2:-10834057 | MS.gene20077:CDS |
| ACACGAGTGAGATGAAGAAA+AGG | 0.516134 | 7.2:+10833904 | None:intergenic |
| TGCTTTGTGGATCGTTAATG+AGG | 0.519695 | 7.2:-10832928 | MS.gene20077:CDS |
| AAGAGAAGATTAAGAGAGAG+AGG | 0.522598 | 7.2:+10834109 | None:intergenic |
| GTAAGGAGATTGTGAAGGAA+GGG | 0.524150 | 7.2:-10833009 | MS.gene20077:CDS |
| ATTATCTGTGGCTTATGGAT+GGG | 0.524528 | 7.2:-10833440 | MS.gene20077:CDS |
| GAAATTGAGGGCTTAATCGA+TGG | 0.529867 | 7.2:-10832758 | MS.gene20077:CDS |
| CGGCGAAGAGCAGCTGGAGA+AGG | 0.529976 | 7.2:+10833934 | None:intergenic |
| GCACGTTGTGTAACCGTAGT+TGG | 0.530006 | 7.2:+10834199 | None:intergenic |
| GGCGGAAGATTCTGAAATTG+AGG | 0.531545 | 7.2:-10833686 | MS.gene20077:CDS |
| TTTCTTCATCTCACTCGTGT+CGG | 0.535665 | 7.2:-10833901 | MS.gene20077:CDS |
| AGGTAGTAAGGAGATTGTGA+AGG | 0.545123 | 7.2:-10833014 | MS.gene20077:CDS |
| TTTGGGCAGAGGGAAATTGA+GGG | 0.547206 | 7.2:-10832770 | MS.gene20077:CDS |
| TGGATCGAATTCCAAAGCTC+CGG | 0.549733 | 7.2:-10833824 | MS.gene20077:CDS |
| ACTACTGGTGTGGTTTGGGA+TGG | 0.550541 | 7.2:-10833328 | MS.gene20077:CDS |
| CAGAAAAGCCTGATAAAACA+TGG | 0.551031 | 7.2:+10832970 | None:intergenic |
| GGATGCAGTGACACAGCTTG+TGG | 0.553261 | 7.2:-10833248 | MS.gene20077:CDS |
| GAAAGAAGAGATTTAACGGC+GGG | 0.553372 | 7.2:+10834030 | None:intergenic |
| TTCTGGTATCACGTTGAAGG+CGG | 0.554633 | 7.2:-10833704 | MS.gene20077:CDS |
| GATGCAGTGACACAGCTTGT+GGG | 0.555205 | 7.2:-10833247 | MS.gene20077:CDS |
| TCCATTATCAGCAACAAGAT+CGG | 0.556064 | 7.2:+10833750 | None:intergenic |
| TTCTCCGGTGATGATGATGA+TGG | 0.557902 | 7.2:-10833859 | MS.gene20077:CDS |
| GTTACCGGCAAGGTCAAGAC+GGG | 0.567998 | 7.2:+10834008 | None:intergenic |
| GTTTAGTTCAACTACTGGTG+TGG | 0.574767 | 7.2:-10833338 | MS.gene20077:CDS |
| ATGCCAATCAACAGGGTAGG+AGG | 0.575686 | 7.2:-10832793 | MS.gene20077:CDS |
| GAAACTGAGAAGAACGTTGA+CGG | 0.578836 | 7.2:+10833959 | None:intergenic |
| CCGTCCATCATCATCATCAC+CGG | 0.581846 | 7.2:+10833855 | None:intergenic |
| CGTTAACAGCGTTACCGGCA+AGG | 0.583355 | 7.2:+10833998 | None:intergenic |
| GGAGAAGAAATCATCATCTA+GGG | 0.584514 | 7.2:+10833876 | None:intergenic |
| CGTTACCGGCAAGGTCAAGA+CGG | 0.585212 | 7.2:+10834007 | None:intergenic |
| TTGTTAATGATCTTGTAGGA+AGG | 0.591111 | 7.2:-10833360 | MS.gene20077:CDS |
| GGCGGGATCGCCGTCGACGA+AGG | 0.591405 | 7.2:+10834047 | None:intergenic |
| AAATTGAGGGCTTAATCGAT+GGG | 0.595021 | 7.2:-10832757 | MS.gene20077:CDS |
| AGAAGGAGAAGAGTGATTTG+GGG | 0.609926 | 7.2:-10833567 | MS.gene20077:CDS |
| AACCATGAAGTAAACCTCCA+TGG | 0.610271 | 7.2:+10832853 | None:intergenic |
| TTCTCAAAACCAGTAACCCA+AGG | 0.613465 | 7.2:+10833136 | None:intergenic |
| GGGATGCCAATCAACAGGGT+AGG | 0.627186 | 7.2:-10832796 | MS.gene20077:CDS |
| TTTGTGGATCGTTAATGAGG+TGG | 0.632821 | 7.2:-10832925 | MS.gene20077:CDS |
| GAGATTTGAGGTGAATGATG+AGG | 0.634010 | 7.2:+10834146 | None:intergenic |
| CAAGATGTTTCAGTCTACCA+TGG | 0.640369 | 7.2:-10832870 | MS.gene20077:CDS |
| TGTGACGTTTATATTCTCTG+TGG | 0.646145 | 7.2:-10833068 | MS.gene20077:CDS |
| AGGTTTGAAGAGGATTTCTG+CGG | 0.648624 | 7.2:-10833296 | MS.gene20077:CDS |
| GATGAAGAAAAGGACGACGA+CGG | 0.656060 | 7.2:+10833914 | None:intergenic |
| AGTAGGGATGCCAATCAACA+GGG | 0.665230 | 7.2:-10832800 | MS.gene20077:CDS |
| CCGGTGATGATGATGATGGA+CGG | 0.666741 | 7.2:-10833855 | MS.gene20077:CDS |
| TTGTTTGAGAAGTTGTGCAG+TGG | 0.672793 | 7.2:+10834173 | None:intergenic |
| GATGTTTCAGTCTACCATGG+AGG | 0.685865 | 7.2:-10832867 | MS.gene20077:CDS |
| GACGAAGGAAATGAAACGTG+AGG | 0.707332 | 7.2:+10834062 | None:intergenic |
| GGAAAGAAGAGATTTAACGG+CGG | 0.721458 | 7.2:+10834029 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTTTCAAATATTTGTGAA+TGG | - | chr7.2:10833441-10833460 | MS.gene20077:CDS | 20.0% |
| CGTTCTTTAAGCTATTTGTT+CGG | - | chr7.2:10833766-10833785 | MS.gene20077:CDS | 30.0% | |
| GTTACATATTCGTGTGTATT+AGG | - | chr7.2:10833555-10833574 | MS.gene20077:CDS | 30.0% | |
| TATATTCTCTGTGGATTTCT+GGG | - | chr7.2:10833896-10833915 | MS.gene20077:CDS | 30.0% | |
| TCAGTTGTTAATGATCTTGT+AGG | - | chr7.2:10833591-10833610 | MS.gene20077:CDS | 30.0% | |
| TTATATTCTCTGTGGATTTC+TGG | - | chr7.2:10833895-10833914 | MS.gene20077:CDS | 30.0% | |
| TTGTTAATGATCTTGTAGGA+AGG | - | chr7.2:10833595-10833614 | MS.gene20077:CDS | 30.0% | |
| TTTGGTTACATGGTTTCTTA+TGG | - | chr7.2:10833857-10833876 | MS.gene20077:CDS | 30.0% | |
| ! | ACGTTGTTCTTTGTTCTTTT+GGG | - | chr7.2:10833489-10833508 | MS.gene20077:CDS | 30.0% |
| ! | ATGGTATTTTGCTGAAATTG+AGG | - | chr7.2:10833734-10833753 | MS.gene20077:CDS | 30.0% |
| ! | GTTTTCAATTAGGTTTGAAG+AGG | - | chr7.2:10833649-10833668 | MS.gene20077:CDS | 30.0% |
| !! | TGATTTTGGTCCATTTTCTT+TGG | - | chr7.2:10833170-10833189 | MS.gene20077:CDS | 30.0% |
| !! | TGTTGCTGATAATGGAATTA+GGG | - | chr7.2:10833212-10833231 | MS.gene20077:CDS | 30.0% |
| !! | TTATTTTGTGGCTAAGAGTA+GGG | - | chr7.2:10834139-10834158 | MS.gene20077:CDS | 30.0% |
| !! | TTGTTGCTGATAATGGAATT+AGG | - | chr7.2:10833211-10833230 | MS.gene20077:CDS | 30.0% |
| !!! | GTTGAAATTGATGCCATTTT+CGG | - | chr7.2:10833788-10833807 | MS.gene20077:CDS | 30.0% |
| !!! | TTGGCTTGTGTTTTATTTTG+TGG | - | chr7.2:10834127-10834146 | MS.gene20077:CDS | 30.0% |
| !!! | TTTATTTTGTGGCTAAGAGT+AGG | - | chr7.2:10834138-10834157 | MS.gene20077:CDS | 30.0% |
| AAATTGAGGGCTTAATCGAT+GGG | - | chr7.2:10834198-10834217 | MS.gene20077:CDS | 35.0% | |
| AAGAAGGAGAAGAGTGATTT+GGG | - | chr7.2:10833387-10833406 | MS.gene20077:CDS | 35.0% | |
| AAGAGAAGATTAAGAGAGAG+AGG | + | chr7.2:10832849-10832868 | None:intergenic | 35.0% | |
| AATCCCGAATCCAAAGAAAA+TGG | + | chr7.2:10833183-10833202 | None:intergenic | 35.0% | |
| ACGGGAAAGAAGAGATTTAA+CGG | + | chr7.2:10832932-10832951 | None:intergenic | 35.0% | |
| AGAAGAAGAAGAAGAAGAAG+AGG | - | chr7.2:10833353-10833372 | MS.gene20077:CDS | 35.0% | |
| ATTATCTGTGGCTTATGGAT+GGG | - | chr7.2:10833515-10833534 | MS.gene20077:CDS | 35.0% | |
| CAGAAAAGCCTGATAAAACA+TGG | + | chr7.2:10833988-10834007 | None:intergenic | 35.0% | |
| CTAGATGATGATTTCTTCTC+CGG | - | chr7.2:10833081-10833100 | MS.gene20077:CDS | 35.0% | |
| GAAGAAGAAGAAGAAGAAGA+GGG | - | chr7.2:10833354-10833373 | MS.gene20077:CDS | 35.0% | |
| GAGAAATGTGAAGAGATTTG+AGG | + | chr7.2:10832824-10832843 | None:intergenic | 35.0% | |
| GGAGAAGAAATCATCATCTA+GGG | + | chr7.2:10833082-10833101 | None:intergenic | 35.0% | |
| TCCATTATCAGCAACAAGAT+CGG | + | chr7.2:10833208-10833227 | None:intergenic | 35.0% | |
| TGTGACGTTTATATTCTCTG+TGG | - | chr7.2:10833887-10833906 | MS.gene20077:CDS | 35.0% | |
| ! | ATCGTTAATGAGGTGGTTTT+TGG | - | chr7.2:10834037-10834056 | MS.gene20077:CDS | 35.0% |
| ! | GACGTTGTTCTTTGTTCTTT+TGG | - | chr7.2:10833488-10833507 | MS.gene20077:CDS | 35.0% |
| ! | GGCTTTTCTGATTAAATGCT+TGG | - | chr7.2:10833998-10834017 | MS.gene20077:CDS | 35.0% |
| ! | GTTGTCTTCCATGTTTTATC+AGG | - | chr7.2:10833977-10833996 | MS.gene20077:CDS | 35.0% |
| ! | TGGTCCATTTTCTTTGGATT+CGG | - | chr7.2:10833176-10833195 | MS.gene20077:CDS | 35.0% |
| !! | GTTTGGGATGGTTTTCAATT+AGG | - | chr7.2:10833639-10833658 | MS.gene20077:CDS | 35.0% |
| !! | GTTTTTCAGATTGTTCGTTC+TGG | - | chr7.2:10833234-10833253 | MS.gene20077:CDS | 35.0% |
| !!! | AATGGTAGCGTTGTTGATTT+TGG | - | chr7.2:10833156-10833175 | MS.gene20077:CDS | 35.0% |
| !!! | GTTTTGAGAAGGAGATTTCT+GGG | - | chr7.2:10833832-10833851 | MS.gene20077:CDS | 35.0% |
| !!! | TCTTTTGGGTTCATTATCTG+TGG | - | chr7.2:10833503-10833522 | MS.gene20077:CDS | 35.0% |
| !!! | TTTCTGCGGTTGTTTTGATA+AGG | - | chr7.2:10833673-10833692 | MS.gene20077:CDS | 35.0% |
| !!! | TTTCTGGGTTTTTGGTTACA+TGG | - | chr7.2:10833847-10833866 | MS.gene20077:CDS | 35.0% |
| AACCATGAAGTAAACCTCCA+TGG | + | chr7.2:10834105-10834124 | None:intergenic | 40.0% | |
| AATTCCAAAGCTCCGGTTAA+TGG | - | chr7.2:10833138-10833157 | MS.gene20077:CDS | 40.0% | |
| ACACGAGTGAGATGAAGAAA+AGG | + | chr7.2:10833054-10833073 | None:intergenic | 40.0% | |
| AGAAGGAGAAGAGTGATTTG+GGG | - | chr7.2:10833388-10833407 | MS.gene20077:CDS | 40.0% | |
| AGGTAGTAAGGAGATTGTGA+AGG | - | chr7.2:10833941-10833960 | MS.gene20077:CDS | 40.0% | |
| AGGTTTACTTCATGGTTGCT+TGG | - | chr7.2:10834108-10834127 | MS.gene20077:CDS | 40.0% | |
| AGGTTTGAAGAGGATTTCTG+CGG | - | chr7.2:10833659-10833678 | MS.gene20077:CDS | 40.0% | |
| AGTAAGGAGATTGTGAAGGA+AGG | - | chr7.2:10833945-10833964 | MS.gene20077:CDS | 40.0% | |
| CAAGATGTTTCAGTCTACCA+TGG | - | chr7.2:10834085-10834104 | MS.gene20077:CDS | 40.0% | |
| CATGGTAGACTGAAACATCT+TGG | + | chr7.2:10834087-10834106 | None:intergenic | 40.0% | |
| CATTATCTGTGGCTTATGGA+TGG | - | chr7.2:10833514-10833533 | MS.gene20077:CDS | 40.0% | |
| CGGAGAAGAAATCATCATCT+AGG | + | chr7.2:10833083-10833102 | None:intergenic | 40.0% | |
| GAAACTGAGAAGAACGTTGA+CGG | + | chr7.2:10832999-10833018 | None:intergenic | 40.0% | |
| GAAAGAAGAGATTTAACGGC+GGG | + | chr7.2:10832928-10832947 | None:intergenic | 40.0% | |
| GAAATTGAGGGCTTAATCGA+TGG | - | chr7.2:10834197-10834216 | MS.gene20077:CDS | 40.0% | |
| GAAGAAGGAGAAGAGTGATT+TGG | - | chr7.2:10833386-10833405 | MS.gene20077:CDS | 40.0% | |
| GGAAAGAAGAGATTTAACGG+CGG | + | chr7.2:10832929-10832948 | None:intergenic | 40.0% | |
| GGCTTATGGATGGGTAATTA+TGG | - | chr7.2:10833524-10833543 | MS.gene20077:CDS | 40.0% | |
| GGTTCATTATCTGTGGCTTA+TGG | - | chr7.2:10833510-10833529 | MS.gene20077:CDS | 40.0% | |
| GTAAGGAGATTGTGAAGGAA+GGG | - | chr7.2:10833946-10833965 | MS.gene20077:CDS | 40.0% | |
| TACCATGGAGGTTTACTTCA+TGG | - | chr7.2:10834100-10834119 | MS.gene20077:CDS | 40.0% | |
| TCAACAACGCTACCATTAAC+CGG | + | chr7.2:10833153-10833172 | None:intergenic | 40.0% | |
| TCCGATCTTGTTGCTGATAA+TGG | - | chr7.2:10833204-10833223 | MS.gene20077:CDS | 40.0% | |
| TGCTTTGTGGATCGTTAATG+AGG | - | chr7.2:10834027-10834046 | MS.gene20077:CDS | 40.0% | |
| TTCAACTACTGGTGTGGTTT+GGG | - | chr7.2:10833623-10833642 | MS.gene20077:CDS | 40.0% | |
| TTCTCAAAACCAGTAACCCA+AGG | + | chr7.2:10833822-10833841 | None:intergenic | 40.0% | |
| TTGTTTGAGAAGTTGTGCAG+TGG | + | chr7.2:10832785-10832804 | None:intergenic | 40.0% | |
| TTTCTTCATCTCACTCGTGT+CGG | - | chr7.2:10833054-10833073 | MS.gene20077:CDS | 40.0% | |
| TTTGTGGATCGTTAATGAGG+TGG | - | chr7.2:10834030-10834049 | MS.gene20077:CDS | 40.0% | |
| ! | ATTTTCGGTTATGTCGCCTT+GGG | - | chr7.2:10833803-10833822 | MS.gene20077:CDS | 40.0% |
| ! | GAGATTTGAGGTGAATGATG+AGG | + | chr7.2:10832812-10832831 | None:intergenic | 40.0% |
| ! | GGAAGGTTTAGTTCAACTAC+TGG | - | chr7.2:10833612-10833631 | MS.gene20077:CDS | 40.0% |
| ! | GGTCCATTTTCTTTGGATTC+GGG | - | chr7.2:10833177-10833196 | MS.gene20077:CDS | 40.0% |
| ! | GTTTAGTTCAACTACTGGTG+TGG | - | chr7.2:10833617-10833636 | MS.gene20077:CDS | 40.0% |
| !! | GAAGGAGATTTCTGGGTTTT+TGG | - | chr7.2:10833839-10833858 | MS.gene20077:CDS | 40.0% |
| !! | GGATTTTAGGAGAGGTAGTA+AGG | - | chr7.2:10833929-10833948 | MS.gene20077:CDS | 40.0% |
| !! | TTTGATAAGGTGGGCTGTTA+GGG | - | chr7.2:10833686-10833705 | MS.gene20077:CDS | 40.0% |
| !!! | GGTTTTGAGAAGGAGATTTC+TGG | - | chr7.2:10833831-10833850 | MS.gene20077:CDS | 40.0% |
| !!! | TGCGGTTGTTTTGATAAGGT+GGG | - | chr7.2:10833677-10833696 | MS.gene20077:CDS | 40.0% |
| !!! | TGGTTTTTGGCTCGAATTTG+CGG | - | chr7.2:10834050-10834069 | MS.gene20077:CDS | 40.0% |
| !!! | TTGGGTTACTGGTTTTGAGA+AGG | - | chr7.2:10833821-10833840 | MS.gene20077:CDS | 40.0% |
| !!! | TTTTGATAAGGTGGGCTGTT+AGG | - | chr7.2:10833685-10833704 | MS.gene20077:CDS | 40.0% |
| AAACCTCCTACCCTGTTGAT+TGG | + | chr7.2:10834168-10834187 | None:intergenic | 45.0% | |
| AATCAACAGGGTAGGAGGTT+TGG | - | chr7.2:10834167-10834186 | MS.gene20077:CDS | 45.0% | |
| AGAAGAAGAAGAAGAGGGAG+AGG | - | chr7.2:10833359-10833378 | MS.gene20077:CDS | 45.0% | |
| AGAGGGAGAGGAAAAGAAGA+AGG | - | chr7.2:10833371-10833390 | MS.gene20077:CDS | 45.0% | |
| AGTAGGGATGCCAATCAACA+GGG | - | chr7.2:10834155-10834174 | MS.gene20077:CDS | 45.0% | |
| ATCAACAGGGTAGGAGGTTT+GGG | - | chr7.2:10834168-10834187 | MS.gene20077:CDS | 45.0% | |
| CAAGGCGACATAACCGAAAA+TGG | + | chr7.2:10833804-10833823 | None:intergenic | 45.0% | |
| CGTTTCATTTCCTTCGTCGA+CGG | - | chr7.2:10832898-10832917 | MS.gene20077:CDS | 45.0% | |
| GACGAAGGAAATGAAACGTG+AGG | + | chr7.2:10832896-10832915 | None:intergenic | 45.0% | |
| GATGAAGAAAAGGACGACGA+CGG | + | chr7.2:10833044-10833063 | None:intergenic | 45.0% | |
| GATGTTTCAGTCTACCATGG+AGG | - | chr7.2:10834088-10834107 | MS.gene20077:CDS | 45.0% | |
| GTTCAACTACTGGTGTGGTT+TGG | - | chr7.2:10833622-10833641 | MS.gene20077:CDS | 45.0% | |
| TCGTTCTGGTATCACGTTGA+AGG | - | chr7.2:10833248-10833267 | MS.gene20077:CDS | 45.0% | |
| TGACACAGCTTGTGGGAATA+TGG | - | chr7.2:10833715-10833734 | MS.gene20077:CDS | 45.0% | |
| TGGATCGAATTCCAAAGCTC+CGG | - | chr7.2:10833131-10833150 | MS.gene20077:CDS | 45.0% | |
| TTCTGGTATCACGTTGAAGG+CGG | - | chr7.2:10833251-10833270 | MS.gene20077:CDS | 45.0% | |
| TTTCGCACCGTCGTTGAAAA+CGG | - | chr7.2:10832868-10832887 | MS.gene20077:CDS | 45.0% | |
| TTTGGGCAGAGGGAAATTGA+GGG | - | chr7.2:10834185-10834204 | MS.gene20077:CDS | 45.0% | |
| ! | CATTTTCGGTTATGTCGCCT+TGG | - | chr7.2:10833802-10833821 | MS.gene20077:CDS | 45.0% |
| ! | GAGAAGAGTGATTTGGGGAA+TGG | - | chr7.2:10833393-10833412 | MS.gene20077:CDS | 45.0% |
| ! | TGTGGATTTCTGGGTTGCTT+TGG | - | chr7.2:10833905-10833924 | MS.gene20077:CDS | 45.0% |
| ! | TTCTCCGGTGATGATGATGA+TGG | - | chr7.2:10833096-10833115 | MS.gene20077:CDS | 45.0% |
| !! | GGCGGAAGATTCTGAAATTG+AGG | - | chr7.2:10833269-10833288 | MS.gene20077:CDS | 45.0% |
| !!! | CTGCGGTTGTTTTGATAAGG+TGG | - | chr7.2:10833676-10833695 | MS.gene20077:CDS | 45.0% |
| !!! | GATGATGGACGGACTCTTTT+TGG | - | chr7.2:10833111-10833130 | MS.gene20077:CDS | 45.0% |
| !!! | GCTTTGGAGGATTTTAGGAG+AGG | - | chr7.2:10833921-10833940 | MS.gene20077:CDS | 45.0% |
| !!! | GGGTTGCTTTGGAGGATTTT+AGG | - | chr7.2:10833916-10833935 | MS.gene20077:CDS | 45.0% |
| !!! | GGTTTTTGGCTCGAATTTGC+GGG | - | chr7.2:10834051-10834070 | MS.gene20077:CDS | 45.0% |
| !!! | TGAGGTACCGTTTTCAACGA+CGG | + | chr7.2:10832878-10832897 | None:intergenic | 45.0% |
| AGCAGCGTTAACAGCGTTAC+CGG | + | chr7.2:10832965-10832984 | None:intergenic | 50.0% | |
| ATGCCAATCAACAGGGTAGG+AGG | - | chr7.2:10834162-10834181 | MS.gene20077:CDS | 50.0% | |
| CCGTCCATCATCATCATCAC+CGG | + | chr7.2:10833103-10833122 | None:intergenic | 50.0% | |
| GAGTAGGGATGCCAATCAAC+AGG | - | chr7.2:10834154-10834173 | MS.gene20077:CDS | 50.0% | |
| GATGCAGTGACACAGCTTGT+GGG | - | chr7.2:10833708-10833727 | MS.gene20077:CDS | 50.0% | |
| GCACGTTGTGTAACCGTAGT+TGG | + | chr7.2:10832759-10832778 | None:intergenic | 50.0% | |
| GCTACCATTAACCGGAGCTT+TGG | + | chr7.2:10833145-10833164 | None:intergenic | 50.0% | |
| GTTATGTCGCCTTGGGTTAC+TGG | - | chr7.2:10833810-10833829 | MS.gene20077:CDS | 50.0% | |
| GTTTGGGCAGAGGGAAATTG+AGG | - | chr7.2:10834184-10834203 | MS.gene20077:CDS | 50.0% | |
| TGCTTGGAAGCTGTGCTTTG+TGG | - | chr7.2:10834014-10834033 | MS.gene20077:CDS | 50.0% | |
| ! | ACTACTGGTGTGGTTTGGGA+TGG | - | chr7.2:10833627-10833646 | MS.gene20077:CDS | 50.0% |
| ! | GGATTTCTGGGTTGCTTTGG+AGG | - | chr7.2:10833908-10833927 | MS.gene20077:CDS | 50.0% |
| !! | CCGGTGATGATGATGATGGA+CGG | - | chr7.2:10833100-10833119 | MS.gene20077:CDS | 50.0% |
| CGTTAACAGCGTTACCGGCA+AGG | + | chr7.2:10832960-10832979 | None:intergenic | 55.0% | |
| CGTTACCGGCAAGGTCAAGA+CGG | + | chr7.2:10832951-10832970 | None:intergenic | 55.0% | |
| CTTTCCCGTCTTGACCTTGC+CGG | - | chr7.2:10832943-10832962 | MS.gene20077:CDS | 55.0% | |
| GGATGCAGTGACACAGCTTG+TGG | - | chr7.2:10833707-10833726 | MS.gene20077:CDS | 55.0% | |
| GGGATGCCAATCAACAGGGT+AGG | - | chr7.2:10834159-10834178 | MS.gene20077:CDS | 55.0% | |
| GTTACCGGCAAGGTCAAGAC+GGG | + | chr7.2:10832950-10832969 | None:intergenic | 55.0% | |
| AGGGTAGGAGGTTTGGGCAG+AGG | - | chr7.2:10834174-10834193 | MS.gene20077:CDS | 60.0% | |
| GGGTAGGAGGTTTGGGCAGA+GGG | - | chr7.2:10834175-10834194 | MS.gene20077:CDS | 60.0% | |
| CGGCGAAGAGCAGCTGGAGA+AGG | + | chr7.2:10833024-10833043 | None:intergenic | 65.0% | |
| CGACGACGGCGAAGAGCAGC+TGG | + | chr7.2:10833030-10833049 | None:intergenic | 70.0% | |
| GGCGGGATCGCCGTCGACGA+AGG | + | chr7.2:10832911-10832930 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 10832748 | 10834229 | 10832748 | ID=MS.gene20077 |
| chr7.2 | mRNA | 10832748 | 10834229 | 10832748 | ID=MS.gene20077.t1;Parent=MS.gene20077 |
| chr7.2 | exon | 10832748 | 10834229 | 10832748 | ID=MS.gene20077.t1.exon1;Parent=MS.gene20077.t1 |
| chr7.2 | CDS | 10832748 | 10834229 | 10832748 | ID=cds.MS.gene20077.t1;Parent=MS.gene20077.t1 |
| Gene Sequence |
| Protein sequence |
