AlfalfaGEDB | MS.gene20920

M. sativa cultivar XinJiangDaYe / MS.gene20920

KEGG: -
GO: -
PFAM: PF20435.1

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20920.t1	KEH43178.1	93.6	771	49	0	1	771	1	771	0.00E+00	1355.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20920.t1	Q0WR66	28.1	791	520	21	14	771	1	775	6.7e-41	170.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20920.t1	A0A072VP18	93.6	771	49	0	1	771	1	771	0.0e+00	1355.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene20920	0.817307	3.53E-52	-1.69E-46
MS.gene049350	MS.gene20920	0.836017	1.20E-56	-1.69E-46
MS.gene049368	MS.gene20920	0.804438	2.16E-49	-1.69E-46
MS.gene049441	MS.gene20920	0.800745	1.25E-48	-1.69E-46
MS.gene049711	MS.gene20920	0.839008	2.05E-57	-1.69E-46
MS.gene049807	MS.gene20920	0.826357	2.84E-54	-1.69E-46
MS.gene049821	MS.gene20920	0.810596	1.07E-50	-1.69E-46
MS.gene049850	MS.gene20920	0.823687	1.21E-53	-1.69E-46
MS.gene050901	MS.gene20920	0.812672	3.77E-51	-1.69E-46
MS.gene051018	MS.gene20920	0.821399	4.12E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20920.t1	MTR_1g085710	96.368	771	28	0	1	771	1	771	0.0	1524
MS.gene20920.t1	MTR_1g085710	96.306	758	28	0	14	771	1	758	0.0	1495
MS.gene20920.t1	MTR_7g007420	75.510	49	11	1	1	48	35	83	6.99e-15	73.9
MS.gene20920.t1	MTR_8g064920	74.468	47	11	1	11	56	74	120	2.17e-13	70.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20920.t1	AT2G46980	31.297	802	484	23	14	773	1	777	4.97e-78	267
MS.gene20920.t1	AT2G46980	30.923	802	487	23	14	773	1	777	7.86e-76	261
MS.gene20920.t1	AT2G46980	31.000	800	485	23	14	771	1	775	9.73e-76	261
MS.gene20920.t1	AT2G46980	30.769	767	464	23	14	738	1	742	2.35e-66	235
MS.gene20920.t1	AT2G46980	29.427	751	449	25	14	715	1	719	3.69e-49	185
MS.gene20920.t1	AT2G46980	27.801	482	306	16	14	473	1	462	4.58e-24	107

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Find 163 sgRNAs with CRISPR-Local

Find 370 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGTACAGAAAATTTG+AGG	0.505203	1.3:-60871903	MS.gene20920:CDS
AAAAGGCTGTGCAAACATAA+AGG	0.434348	1.3:-60869767	MS.gene20920:CDS
AAAAGTGCTTAAATTAGGCA+TGG	0.600818	1.3:+60871021	None:intergenic
AAAGAGACAGAAGAGCAGGA+TGG	0.636909	1.3:-60870796	MS.gene20920:CDS
AAAGGCCAGTCACTCGTTCT+AGG	0.359424	1.3:-60871687	MS.gene20920:CDS
AAATAGTTCTACACTCTTGC+TGG	0.342385	1.3:+60871209	None:intergenic
AACACCAAAGACACACCAAA+AGG	0.447325	1.3:-60871098	MS.gene20920:CDS
AACAGACTTCAAAATTTCTG+AGG	0.552915	1.3:+60869360	None:intergenic
AACATCCAAGGACGTCGTCA+AGG	0.600753	1.3:-60870745	MS.gene20920:intron
AACTTCTTGTAATTATTAGA+AGG	0.396004	1.3:+60872072	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCTGATAAAGACCTATG+TGG	+	chr1.3:60869672-60869691	None:intergenic	30.0%
AAATGAATGTAAACTGTGTC+AGG	+	chr1.3:60872570-60872589	None:intergenic	30.0%
AACAGACTTCAAAATTTCTG+AGG	+	chr1.3:60870620-60870639	None:intergenic	30.0%
AACTATTCAGAGTCATTATG+AGG	+	chr1.3:60871033-60871052	None:intergenic	30.0%
AAGAAAACGAGACAAAACAT+CGG	+	chr1.3:60869430-60869449	None:intergenic	30.0%
AATAAAATGGGAGGATTTAG+TGG	-	chr1.3:60868616-60868635	MS.gene20920:intron	30.0%
AATGAATGTAAACTGTGTCA+GGG	+	chr1.3:60872569-60872588	None:intergenic	30.0%
ACAACTATTATGAATGCTCA+GGG	+	chr1.3:60867320-60867339	None:intergenic	30.0%
ACTATTTACTGGTGCTTATA+AGG	-	chr1.3:60869749-60869768	MS.gene20920:CDS	30.0%
ACTTATGATAGTCTGGAAAT+TGG	-	chr1.3:60867199-60867218	MS.gene20920:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	60867092	60872907	60867092	ID=MS.gene20920
chr1.3	mRNA	60867092	60872907	60867092	ID=MS.gene20920.t1;Parent=MS.gene20920
chr1.3	exon	60872875	60872907	60872875	ID=MS.gene20920.t1.exon1;Parent=MS.gene20920.t1
chr1.3	CDS	60872875	60872907	60872875	ID=cds.MS.gene20920.t1;Parent=MS.gene20920.t1
chr1.3	exon	60870973	60872505	60870973	ID=MS.gene20920.t1.exon2;Parent=MS.gene20920.t1
chr1.3	CDS	60870973	60872505	60870973	ID=cds.MS.gene20920.t1;Parent=MS.gene20920.t1
chr1.3	exon	60870746	60870869	60870746	ID=MS.gene20920.t1.exon3;Parent=MS.gene20920.t1
chr1.3	CDS	60870746	60870869	60870746	ID=cds.MS.gene20920.t1;Parent=MS.gene20920.t1
chr1.3	exon	60869723	60869842	60869723	ID=MS.gene20920.t1.exon4;Parent=MS.gene20920.t1
chr1.3	CDS	60869723	60869842	60869723	ID=cds.MS.gene20920.t1;Parent=MS.gene20920.t1
chr1.3	exon	60869566	60869626	60869566	ID=MS.gene20920.t1.exon5;Parent=MS.gene20920.t1
chr1.3	CDS	60869566	60869626	60869566	ID=cds.MS.gene20920.t1;Parent=MS.gene20920.t1
chr1.3	exon	60869304	60869453	60869304	ID=MS.gene20920.t1.exon6;Parent=MS.gene20920.t1
chr1.3	CDS	60869304	60869453	60869304	ID=cds.MS.gene20920.t1;Parent=MS.gene20920.t1
chr1.3	exon	60869155	60869213	60869155	ID=MS.gene20920.t1.exon7;Parent=MS.gene20920.t1
chr1.3	CDS	60869155	60869213	60869155	ID=cds.MS.gene20920.t1;Parent=MS.gene20920.t1
chr1.3	exon	60868112	60868246	60868112	ID=MS.gene20920.t1.exon8;Parent=MS.gene20920.t1
chr1.3	CDS	60868112	60868246	60868112	ID=cds.MS.gene20920.t1;Parent=MS.gene20920.t1
chr1.3	exon	60867092	60867198	60867092	ID=MS.gene20920.t1.exon9;Parent=MS.gene20920.t1
chr1.3	CDS	60867092	60867198	60867092	ID=cds.MS.gene20920.t1;Parent=MS.gene20920.t1

Gene Sequence

>MS.gene20920

ATGGATACTGAAGCGCGGAAAATTCTGCACGAAGTAAGTAGAAACCTCGATTTCGCGACTTTTATGAACTGTGGTTTAGTTTGGTCGATGTGGCTTTTGCATATTTTACTTATGATAGTCTGGAAATTGGTACTAGTACTTTGTTTGATTAGGTTTATTCATTGCTGTTAATTTCTCATTTAAATATTGTTTTGATGATTTCTGGTTTATTCTGTTGCAAATGCACCCTGAGCATTCATAATAGTTGTATGTAAGTGTTAGAAACAAAGGCTGTGTATAGTTTTTTAGTGTCATTTTTTTGAACATTAAAGGCTAGGATTAATTATGATTTTAGTTGCAGTGTTTCTATTTTTAAGTGAAAAATTATATTAAGATATTCATGGATTTGAACTATATTTTCAGGAGCATATGAATGACTGTCGGAGTATGGGAAGCATTCATCCGTCTAGCCAGTCAAGGAAAATTTCCATAGGAGTTATGGCAGAATCGAAAGCCAGCTCAAGAAGCGGACCTAAGAAAGGGGATGGACCTGTCGTGCCAAATACAGAAAGGGTAACCTCTAAGATGGGAAATATCAACACAGGAGAAAGCAAGGCTGTAGGAGGGACAACAATTTCCGCTAAAGAGAAGCAAATTGGAGGTCCAAAAGCGGTGGAGGGTTCTTGGATGGCTAAATCGCCTACTACAGAGGCAAATCATCAAGCCAACAAAACCGCTAGTTTACTGGTCTCTTCTGGGGGGAAGAAGGATGAGCCTCATGGAAAAGGGTGTGGAGCTGGGGTTCAGTTTTTTTCATATCAAACTTCGAAACTGCCTTCTAATAATTACAAGAAGTTTGATGGCGATACTAGCAGAAGCTCTAGAAAGAAGGGAAAGAAGGATGGGAGTGCTGAAGAAAGGGTAGAGGAATTTACATTTACCACTACACCAAAAGTTTTTGAGACTGATAAAACAAAGGCAGAAGACAAGACACCTAGAACAGAAAACAGTACAGAAAATTTGAGGATGAAGCTATGCCAAATATTGGGGACCACTTCTTCCCCTAAGACTCAGGATTCAGGCTCTCACAATTGTAAGAAGGACAAGGAAAGTTCACCGCTCAAGCCACACTTGAACCAGAAGAGAAATGATTTTGTTAAGAGCAAACAGAATTCAGATACTATAGAAACTGATTCAGAAAGTCCTGACCATACTCGTAAAAGGCCAGTCACTCGTTCTAGGACCAGAAAGAAAGCGTCTTCCCAGAAGCAACAGGGAAAGGGTAAAAGTACCATAATTTCCAGAGAGGCAGAGAAGCATCAAGAAAAAAGTATATTGTCTTTTGAAGAAAAAGGGATTGGCGGCCGAGATGCTTTTCCAAATGATGGTTCTTCAGTGTCTTTAAAGAAAAAGAGTCAGGAAAAGAGTTCCAAAATAGGGGGACATAAGCTCTGCTTCACCGAAAGTGATACCACAAATAAACTTCATCAAGACACCTCAAAGACTGATCCACCACTGTATGCAGGGGCCTCATTTTCACTTGGGAATAAAATGGGAGGATTTAGTGGTTTCTTAGCTGATTATCATACAAAAAGCCCCAAGACACAGAAAAAAGACCACAAAAAAGAATTATACCCAACACAAACAGCAAACAATACAGATCAGCGTGTAGAACATGAGGTATCAGAAAACAGAAACCAGCAAGAGTGTAGAACTATTTCTGCTACACAAAATGATGCCAAGTCGCAAGATGAATTTCAAAGTCCTACATTTCAATTTAAGACACCTACTTTGAGCTCTCCTAGCCCAACACCAAAGACACACCAAAAGGCAAATGATGTCAATAGTCCAGCATCAACCGAAAGACCAAGATTTTCTATGAGGACCATGCCTAATTTAAGCACTTTTATGGCTTCGGAGCCAAACTTCACAACAAGGGAACAAGACAAGTCTCATGTATCCTTATTATTCTAGTGTTTCAAGTTGATACTTTTGTGTCTTTTGTCTTTGGACTAAAGATGCCGTGTTTTTGTATTTTGCTTTACTTAATATACTTCAGCATATGAAGGAACAAAAGTATTCTATTCATAGAAAAGAAAAATCTCTGGAGAAAGAGACAGAAGAGCAGGATGGATCATCAGATTCATCATATGAGGAGAGGAACATCCAAGGACGTCGTCAAGGTTTGGCTTGCATCAAATAATATGAATTATCTTGTAGACTCTTAATAAAATTTGCAGTTGATGCATCTCAATGAACTTCTTGTACTTATTTTTTATCAGGCGTTTTTAATATAACCGATTTCTTCTTAAAACTAAACCAATTACATTAGCCTCAGGAAGTATGAACATATATGCCGATGTTTTGTCTCGTTTTCTTCTGTTTCCATGCCAAGCCAATCTTGTATGTTCTTCAAAATTCTGAAATATTCATTTCCTAGTAAATATGTTTTCTTAGCAAAAGTTCCAAAAAATAGGCTTTCTAACATGTCTCGCTCATTCTCAAATCATTCTGATGATGCGGATAGGGATGGTTGGTTCTTTGTGCAATGCATGATTGGAAATAATTACTTGGCTAATTATATTATTTTGTTACATGCCACATAGGTCTTTATCAGATTTAGCATGCATCTCATCCTTCATAACCTGTGATTTGAGATTAAGGTGTGCTCTGTCATCACTATTTACTGGTGCTTATAAGGTGTTAAAGTTACCTGCCAGGTTCACAGTTTCTAGGTTCTTGCACCTGGTCAGTTATTATTTTCAAAGGATCATCTTGCAAATTGAAACCCAGGGAAAAAAATCCATTCGTATGGAGTGTTAGTTGTGTAGCTCCCTCCAGTAGATGCGGTTGTAAGCCGTGATGAATGAAAACACACTGATACTTGTTGGCAGACAACTAAAATTCATCATATATAATTGTTATCTGATTGGCACATGCTCTTCTAAAATTCCTCTGCTAGCTTTTAATGCATTTTCTGGTTTAACTTTAGTTGCAATATCAGGGCTATCAGATGTTGTCTTTTTTCCTCCTTTATATATACTATTTGACTTTTCATGACAGAACCATCTTCTGTTCATGTGTAGGTTCTGGAGCAAAGCATACTGCTGAGAGGAAAAGTTTTACACTTAAACCTGTCAAAAGGCTGTGCAAACATAAAGGCATAAAATTTAATGATACAAGCGCAGCTTCAGTGTCTTCAAAAGGTAAAATTTACTCTTTGTACTTGATATTTAATATCTAAATATGCTATCCTGATGTATTTAATCTTCAAACTTCAATTTAATTGTACAAATGATCAGAGCTAGAAGAAAGCGATTCGATGGACGAAGCTTCTGAACAGACTCAAGATGGATTTGTCAGGTGTTTTATCTTTTTCTACGATGAACTTAGTTATGTGTAAGAAAAAGTACAAAATACTATACTGATGTTTCAACAATCTTTTTCTAATTGTATGATTTTTGCCGATTGTTAGGGCTGTTGAACTGTTCGCTTTGGAATTGGCCAAACTTAAGAACAAACTGAATTTGATGACTAGTCAGAAATCCTCAGAAATTTTGAAGTCTGTTGCTGAAGACATACATTTCCAGCTGCAGGATGTTCATTCCCAGATTGAAACAGACTTGTACGTATATTAGAATAATGAATTCTTAAACTTACATGTGTTTTTGAACAGACTCAAACATTCATGTGTTTCTGAAAAAAAATGTTTCAGAGGAAAGCTTACAAATCTCAATAAATCAAAGAGAAAACGGATAGAAACAAGATTTGAAGGTAGCAAATTTTCTACTTCACTCCTTGCTTAAATATATTTGTGTTTTTATTTAACTAATATGGTAATTTTGTACAACTTTCTCCTTTTCATATCTCCCTTTTAAATTCTATTTCCAAAACCTTCTGTCTAAGAGGATATCTTTATGAATGATTTTACACTTAATATTCTTTGGAAAGTTCTGAAACCTCATAATGACTCTGAATAGTTCTCCTTATAAAGGAGAAAAGTAAATGCTTTTAAAGTTCTCAAGATATTATATGCTTTAACAATTTCATTTAATACTTCAAAGTTAAATTCTAAGAATATATTAGGATGAAGGGTGGCTGACTATTTTGAAGAATTCAGCATTATTGTTCTTTTGGCACCTGTTTTGGTTCACTTAATTTGTTTTGGTTTTATTATAAAATATTAGAATAAAAAATTAATTGATTCAAAATTTATCTTGTTTATATTTAAACTGTATAGTTCGGGCTAATTTGCTGATCACAATTGAGAAGTTAATGAAAATACAAGTGCTTGTAAGTTGTAGGTCCAAGACAAATTCAAATATTTCACATCTGTATTTGCAGAAATACCAAGTTTCATGTTAATATGATATTTTATCATAAATGTTTAACAATATCAGGTCCGAAAGCATAGGGAAGAATCTCTCACATCTAAGAATTGTACTACTGAAAATATCTCCGCATTTGATTTCTCACTTTGCATTTCTACAACTTACTGCATTGTCTATCTATCTATATATATGTATATTGCTTCAGAATTCCATATCCAATATTTTCGTCATGTTTTCCTTTCTTAATAGCATTTGTCATAAGAATATGTTTGTGCATGACTTTCATAGATGTTTTCTTCATCTTCTCTTTCTTACTTTTCTCACCTTCTATTCCTCTTAACAAAAATGTAGACCAGCAGAAACAGCTGAGATTAATCTACGATAGATTCAAGGAAGAGGTTAATCTACACCTACAGGACTGCAGAAGCACTGTAGAAGATCTCGAGGCAGATCAGATAGAGATAAAAGGAGCCCTTGAAAAGCAAAGTATGAAAACTCGGTGCATCTGTGTTACTCTATTTTGTATTTAAAATTAACTTATAATTAAAATCTTACTAAAAGAAGTTTTATTTTCAAAATAAAAAAAAGTCTTTTGCATATATCTTCAAAATATCAACTCAGATGTTCGAGAGAAAGCTTATACTAAAACTGTTAGAATACTTGCTTTAAATCTTTCTGAATCCTGTTATAAATTAGTAGTTAAGACGAAACTTGAATGACCCGCAGAAATTTTTGTTTGTTAGCTCTGTATTGTATTGTGGCTCAAGTGGTTTAAGGATGTAAGCTCACTTTAGGTGGATACCCACAGTCCATTGGTAGCTTCTGTTTATAGTCATTGCCGTCTCATCTCGTGCTACAGGTTGTGGGACAGAATCAGTCAGTCATTAGTCTGCTATGAAACATTGTTATTTGCATGAACTAAGAATCAACTGAGTTTTTGAGGGGCTAAATCACTGTCTGCTCCCCGAGTCCCCGTTAAGCTGTATTAGGTTATATATGTTTATGACTATCAGAGATGGTATCATATTACTGTATGTAAGATATAAGGTGAGACTTTGAGGGCCAGCCGGAGTGGGCTGGAGGGAGCAAGAGTGGGAGCAGTGCGATTTTTTTCCCTTCCCGTTTTTATGTGTAAATAAAGATTTATATTCTAATCTCTAGAGTCCCTGACACAGTTTACATTCATTTATGTCATCTTCTGTATCACTTCTGTTAATTATCAGTTTTCGTTGTAATATTTTGATCAGCAACCACTTCAGCTTTAACTCAATAAGGGATTGGTATTTGGTAGATTTCTTGCATCTAATCTCTGGTTAAGGGCAGCAAAATTACCATTTGCATTATTGACAAGTATTATCTAGGTTGTGATCTAGTTTTGAATATATCCTATGTATTGTAGGAGTAGCACATAAAAAGCTTATATCACAAGTTGAAGAATCAGTGGATGTCCAACTCAATGATGCTCAAAAGAAAATTACATCCACACAGCAGGCAAGTATTTGTTAG

Protein sequence

>MS.gene20920.t1

MDTEARKILHEEHMNDCRSMGSIHPSSQSRKISIGVMAESKASSRSGPKKGDGPVVPNTERVTSKMGNINTGESKAVGGTTISAKEKQIGGPKAVEGSWMAKSPTTEANHQANKTASLLVSSGGKKDEPHGKGCGAGVQFFSYQTSKLPSNNYKKFDGDTSRSSRKKGKKDGSAEERVEEFTFTTTPKVFETDKTKAEDKTPRTENSTENLRMKLCQILGTTSSPKTQDSGSHNCKKDKESSPLKPHLNQKRNDFVKSKQNSDTIETDSESPDHTRKRPVTRSRTRKKASSQKQQGKGKSTIISREAEKHQEKSILSFEEKGIGGRDAFPNDGSSVSLKKKSQEKSSKIGGHKLCFTESDTTNKLHQDTSKTDPPLYAGASFSLGNKMGGFSGFLADYHTKSPKTQKKDHKKELYPTQTANNTDQRVEHEVSENRNQQECRTISATQNDAKSQDEFQSPTFQFKTPTLSSPSPTPKTHQKANDVNSPASTERPRFSMRTMPNLSTFMASEPNFTTREQDKSHHMKEQKYSIHRKEKSLEKETEEQDGSSDSSYEERNIQGRRQGSGAKHTAERKSFTLKPVKRLCKHKGIKFNDTSAASVSSKELEESDSMDEASEQTQDGFVRAVELFALELAKLKNKLNLMTSQKSSEILKSVAEDIHFQLQDVHSQIETDLGKLTNLNKSKRKRIETRFEDQQKQLRLIYDRFKEEVNLHLQDCRSTVEDLEADQIEIKGALEKQRVAHKKLISQVEESVDVQLNDAQKKITSTQQASIC