AlfalfaGEDB | MS.gene21143

M. sativa cultivar XinJiangDaYe / MS.gene21143

KEGG: -
GO: GO:0003674 GO:0004857 GO:0030234 GO:0098772
PFAM: PF04043.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21143.t1	AFK45126.1	97.4	196	5	0	1	196	1	196	3.90E-98	367.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21143.t1	P17407	47.2	180	95	0	12	191	13	192	4.3e-45	182.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21143.t1	G7KG88	97.4	196	5	0	1	196	22	217	2.8e-98	367.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049222	MS.gene21143	-0.829308	5.53E-55	-1.69E-46
MS.gene049232	MS.gene21143	-0.837992	3.75E-57	-1.69E-46
MS.gene049320	MS.gene21143	-0.824013	1.02E-53	-1.69E-46
MS.gene04986	MS.gene21143	0.803138	4.02E-49	-1.69E-46
MS.gene05010	MS.gene21143	-0.814573	1.44E-51	-1.69E-46
MS.gene050216	MS.gene21143	-0.822981	1.77E-53	-1.69E-46
MS.gene050323	MS.gene21143	-0.802264	6.09E-49	-1.69E-46
MS.gene050504	MS.gene21143	-0.823198	1.58E-53	-1.69E-46
MS.gene050518	MS.gene21143	-0.812987	3.21E-51	-1.69E-46
MS.gene050577	MS.gene21143	-0.806424	8.28E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene21143	MS.gene56241	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21143.t1	MTR_5g012000	97.449	196	5	0	1	196	22	217	1.74e-142	395
MS.gene21143.t1	MTR_4g101760	63.402	194	60	2	9	191	10	203	9.12e-85	249
MS.gene21143.t1	MTR_3g008840	53.571	168	77	1	23	190	21	187	8.04e-65	198
MS.gene21143.t1	MTR_3g008820	51.190	168	81	1	23	190	20	186	3.72e-62	191
MS.gene21143.t1	MTR_4g035905	43.030	165	91	1	27	191	36	197	6.51e-45	147
MS.gene21143.t1	MTR_4g035870	38.191	199	111	2	1	190	1	196	6.50e-42	140
MS.gene21143.t1	MTR_4g035880	42.073	164	92	1	27	190	36	196	2.55e-41	138
MS.gene21143.t1	MTR_4g025550	38.308	201	106	6	9	195	10	206	8.50e-39	132
MS.gene21143.t1	MTR_4g025610	37.245	196	115	4	7	195	12	206	7.60e-38	130
MS.gene21143.t1	MTR_4g025590	38.636	176	96	4	27	193	3	175	1.37e-36	126

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21143.t1	AT1G62770	50.244	205	92	6	1	196	1	204	5.06e-61	189
MS.gene21143.t1	AT4G12390	56.805	169	69	2	27	192	39	206	1.79e-60	187
MS.gene21143.t1	AT4G25260	46.409	181	96	1	11	190	21	201	2.27e-55	174
MS.gene21143.t1	AT5G62350	47.273	165	86	1	27	190	38	202	8.20e-55	173
MS.gene21143.t1	AT3G47380	42.784	194	101	2	7	190	9	202	3.56e-52	166
MS.gene21143.t1	AT5G62360	41.818	165	92	2	26	190	42	202	2.57e-45	149
MS.gene21143.t1	AT1G62760	43.182	176	90	2	20	191	140	309	7.70e-42	143
MS.gene21143.t1	AT1G14890	41.566	166	90	2	26	189	57	217	8.00e-39	133
MS.gene21143.t1	AT2G01610	40.113	177	93	3	26	189	43	219	2.79e-37	129
MS.gene21143.t1	AT5G20740	40.361	166	90	3	26	186	32	193	1.61e-35	124

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Find 53 sgRNAs with CRISPR-Local

Find 51 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATGGCGGCTAGAGCAG+GGG	0.656730	5.1:+5417460	None:intergenic
AACCAAAGCGAGTGTGTTGC+TGG	0.408904	5.1:-5417990	None:intergenic
AAGGAGTTTCTGCAGTTCGA+TGG	0.560457	5.1:-5418030	None:intergenic
AATTGTTAAGGCTGCCATCA+AGG	0.538854	5.1:+5417940	MS.gene21143:CDS
ACAAGACTGCATAGAAAACA+TGG	0.577763	5.1:+5417748	MS.gene21143:CDS
ACAGTCTTAGCCAATCGGTT+AGG	0.388918	5.1:+5417783	MS.gene21143:CDS
ACATGAACAACGTGCAGACT+TGG	0.438369	5.1:+5417852	MS.gene21143:CDS
ACTTGTCTTGATGGCTTTGC+TGG	0.284433	5.1:+5417902	MS.gene21143:CDS
AGAAAACATGGGTGACAGTT+TGG	0.352972	5.1:+5417760	MS.gene21143:CDS
AGACATTGAACGCATAAAAC+AGG	0.460054	5.1:-5417575	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTTGTACAGAAGATATCAA+AGG	+	chr5.1:5417691-5417710	MS.gene21143:CDS	30.0%
TTAACAATTCCATTCATGGA+AGG	-	chr5.1:5417929-5417948	None:intergenic	30.0%
TTCCATGAATGGAATTGTTA+AGG	+	chr5.1:5417928-5417947	MS.gene21143:CDS	30.0%
ACAAGACTGCATAGAAAACA+TGG	+	chr5.1:5417748-5417767	MS.gene21143:CDS	35.0%
AGACATTGAACGCATAAAAC+AGG	-	chr5.1:5417578-5417597	None:intergenic	35.0%
AGCCTTAACAATTCCATTCA+TGG	-	chr5.1:5417933-5417952	None:intergenic	35.0%
CAAGACTGCATAGAAAACAT+GGG	+	chr5.1:5417749-5417768	MS.gene21143:CDS	35.0%
GATGATAACACTTGTCTTGA+TGG	+	chr5.1:5417893-5417912	MS.gene21143:CDS	35.0%
TTATGCGTTCAATGTCTCAT+GGG	+	chr5.1:5417581-5417600	MS.gene21143:CDS	35.0%
TTTATGCGTTCAATGTCTCA+TGG	+	chr5.1:5417580-5417599	MS.gene21143:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	5417464	5418054	5417464	ID=MS.gene21143
chr5.1	mRNA	5417464	5418054	5417464	ID=MS.gene21143.t1;Parent=MS.gene21143
chr5.1	exon	5417464	5418054	5417464	ID=MS.gene21143.t1.exon1;Parent=MS.gene21143.t1
chr5.1	CDS	5417464	5418054	5417464	ID=cds.MS.gene21143.t1;Parent=MS.gene21143.t1

Gene Sequence

>MS.gene21143

ATGGCGGCTAGAGCAGGGGTTTATTTGCTGGTCCTCATGAGCCTTGTGACTGCAGAATCCTCTATAACCCCATCAGAGTTCATCAAGTCCTCATGTAGAGCTACTCGCTATCCTGTTTTATGCGTTCAATGTCTCATGGGGTATGCGAGCGTGATTGGCCAAAGCGAGCGACAACTAACGATAACCGCTCTATCAGTGAGCATATCCAGGACACGATCGAGTGCATCGTTTGTACAGAAGATATCAAAGGCAAGAGGCATCAAGCCAAGGGAGTACAGAGCCGTACAAGACTGCATAGAAAACATGGGTGACAGTTTGGACAGTCTTAGCCAATCGGTTAGGGAGTTAGGCAGTATTGGTCATGCTGTTGGAGAGGACTTCGTGTGGCACATGAACAACGTGCAGACTTGGGTCAGTGCTGCACTTACTGATGATAACACTTGTCTTGATGGCTTTGCTGGTCCTTCCATGAATGGAATTGTTAAGGCTGCCATCAAGGACAGGGTTGTCAATGTTGCTCAAGTTACCAGCAACACACTCGCTTTGGTTAATCACTTCGCCTCAAGCCATCGAACTGCAGAAACTCCTTAA

Protein sequence

>MS.gene21143.t1

MAARAGVYLLVLMSLVTAESSITPSEFIKSSCRATRYPVLCVQCLMGYASVIGQSERQLTITALSVSISRTRSSASFVQKISKARGIKPREYRAVQDCIENMGDSLDSLSQSVRELGSIGHAVGEDFVWHMNNVQTWVSAALTDDNTCLDGFAGPSMNGIVKAAIKDRVVNVAQVTSNTLALVNHFASSHRTAETP