Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22897.t1 | XP_013450565.1 | 99.2 | 370 | 3 | 0 | 1 | 370 | 315 | 684 | 2.80E-177 | 631.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22897.t1 | Q7ZUV0 | 44.6 | 74 | 39 | 2 | 188 | 261 | 391 | 462 | 3.0e-07 | 57.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22897.t1 | A0A072U620 | 99.2 | 370 | 3 | 0 | 1 | 370 | 315 | 684 | 2.0e-177 | 631.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene22897 | 0.824813 | 6.58E-54 | -1.69E-46 |
| MS.gene049159 | MS.gene22897 | 0.832043 | 1.18E-55 | -1.69E-46 |
| MS.gene049341 | MS.gene22897 | 0.816283 | 5.99E-52 | -1.69E-46 |
| MS.gene049501 | MS.gene22897 | 0.813701 | 2.24E-51 | -1.69E-46 |
| MS.gene049850 | MS.gene22897 | 0.816841 | 4.49E-52 | -1.69E-46 |
| MS.gene049887 | MS.gene22897 | 0.8327 | 8.14E-56 | -1.69E-46 |
| MS.gene050020 | MS.gene22897 | 0.835059 | 2.09E-56 | -1.69E-46 |
| MS.gene050442 | MS.gene22897 | 0.809292 | 2.03E-50 | -1.69E-46 |
| MS.gene050586 | MS.gene22897 | 0.808149 | 3.57E-50 | -1.69E-46 |
| MS.gene050689 | MS.gene22897 | 0.821088 | 4.86E-53 | -1.69E-46 |
| MS.gene050807 | MS.gene22897 | 0.848804 | 4.85E-60 | -1.69E-46 |
| MS.gene050808 | MS.gene22897 | 0.828165 | 1.05E-54 | -1.69E-46 |
| MS.gene050815 | MS.gene22897 | 0.819785 | 9.68E-53 | -1.69E-46 |
| MS.gene050826 | MS.gene22897 | 0.806023 | 1.01E-49 | -1.69E-46 |
| MS.gene050959 | MS.gene22897 | 0.827349 | 1.64E-54 | -1.69E-46 |
| MS.gene051180 | MS.gene22897 | 0.808649 | 2.79E-50 | -1.69E-46 |
| MS.gene051198 | MS.gene22897 | 0.801948 | 7.08E-49 | -1.69E-46 |
| MS.gene051243 | MS.gene22897 | 0.809914 | 1.50E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene22897 | 0.803257 | 3.80E-49 | -1.69E-46 |
| MS.gene051328 | MS.gene22897 | 0.828122 | 1.07E-54 | -1.69E-46 |
| MS.gene051388 | MS.gene22897 | 0.828259 | 9.93E-55 | -1.69E-46 |
| MS.gene051577 | MS.gene22897 | 0.822726 | 2.03E-53 | -1.69E-46 |
| MS.gene05157 | MS.gene22897 | 0.805024 | 1.63E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene22897 | 0.805754 | 1.15E-49 | -1.69E-46 |
| MS.gene051720 | MS.gene22897 | 0.806577 | 7.69E-50 | -1.69E-46 |
| MS.gene051800 | MS.gene22897 | 0.801632 | 8.22E-49 | -1.69E-46 |
| MS.gene052020 | MS.gene22897 | 0.803285 | 3.75E-49 | -1.69E-46 |
| MS.gene052133 | MS.gene22897 | 0.830274 | 3.22E-55 | -1.69E-46 |
| MS.gene052323 | MS.gene22897 | 0.812708 | 3.70E-51 | -1.69E-46 |
| MS.gene052335 | MS.gene22897 | 0.812429 | 4.26E-51 | -1.69E-46 |
| MS.gene052397 | MS.gene22897 | 0.845315 | 4.38E-59 | -1.69E-46 |
| MS.gene052516 | MS.gene22897 | 0.891431 | 4.00E-74 | -1.69E-46 |
| MS.gene052611 | MS.gene22897 | 0.837752 | 4.32E-57 | -1.69E-46 |
| MS.gene052665 | MS.gene22897 | 0.850052 | 2.18E-60 | -1.69E-46 |
| MS.gene052863 | MS.gene22897 | 0.835723 | 1.42E-56 | -1.69E-46 |
| MS.gene052896 | MS.gene22897 | 0.835374 | 1.74E-56 | -1.69E-46 |
| MS.gene053008 | MS.gene22897 | 0.815993 | 6.95E-52 | -1.69E-46 |
| MS.gene053144 | MS.gene22897 | 0.829968 | 3.82E-55 | -1.69E-46 |
| MS.gene053581 | MS.gene22897 | 0.819543 | 1.10E-52 | -1.69E-46 |
| MS.gene053894 | MS.gene22897 | 0.805055 | 1.61E-49 | -1.69E-46 |
| MS.gene054472 | MS.gene22897 | 0.827947 | 1.18E-54 | -1.69E-46 |
| MS.gene054584 | MS.gene22897 | 0.817051 | 4.03E-52 | -1.69E-46 |
| MS.gene05462 | MS.gene22897 | 0.813752 | 2.18E-51 | -1.69E-46 |
| MS.gene05478 | MS.gene22897 | 0.8065 | 7.98E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene22897 | 0.85337 | 2.50E-61 | -1.69E-46 |
| MS.gene055466 | MS.gene22897 | 0.868191 | 7.84E-66 | -1.69E-46 |
| MS.gene055467 | MS.gene22897 | 0.824094 | 9.72E-54 | -1.69E-46 |
| MS.gene055468 | MS.gene22897 | 0.862767 | 4.01E-64 | -1.69E-46 |
| MS.gene055469 | MS.gene22897 | 0.828966 | 6.70E-55 | -1.69E-46 |
| MS.gene055512 | MS.gene22897 | 0.813901 | 2.02E-51 | -1.69E-46 |
| MS.gene055818 | MS.gene22897 | 0.82053 | 6.53E-53 | -1.69E-46 |
| MS.gene055891 | MS.gene22897 | 0.810137 | 1.34E-50 | -1.69E-46 |
| MS.gene056308 | MS.gene22897 | 0.800909 | 1.15E-48 | -1.69E-46 |
| MS.gene056553 | MS.gene22897 | 0.803053 | 4.19E-49 | -1.69E-46 |
| MS.gene056595 | MS.gene22897 | 0.808701 | 2.72E-50 | -1.69E-46 |
| MS.gene056760 | MS.gene22897 | 0.805508 | 1.29E-49 | -1.69E-46 |
| MS.gene057314 | MS.gene22897 | 0.80138 | 9.25E-49 | -1.69E-46 |
| MS.gene057446 | MS.gene22897 | 0.803613 | 3.21E-49 | -1.69E-46 |
| MS.gene057869 | MS.gene22897 | 0.821014 | 5.06E-53 | -1.69E-46 |
| MS.gene057915 | MS.gene22897 | 0.836349 | 9.86E-57 | -1.69E-46 |
| MS.gene058010 | MS.gene22897 | 0.835032 | 2.12E-56 | -1.69E-46 |
| MS.gene058625 | MS.gene22897 | 0.801212 | 1.00E-48 | -1.69E-46 |
| MS.gene058636 | MS.gene22897 | 0.806633 | 7.48E-50 | -1.69E-46 |
| MS.gene059713 | MS.gene22897 | 0.814209 | 1.73E-51 | -1.69E-46 |
| MS.gene059725 | MS.gene22897 | 0.808884 | 2.49E-50 | -1.69E-46 |
| MS.gene059842 | MS.gene22897 | 0.831923 | 1.27E-55 | -1.69E-46 |
| MS.gene059937 | MS.gene22897 | 0.834626 | 2.69E-56 | -1.69E-46 |
| MS.gene060322 | MS.gene22897 | 0.83447 | 2.94E-56 | -1.69E-46 |
| MS.gene06052 | MS.gene22897 | 0.821122 | 4.78E-53 | -1.69E-46 |
| MS.gene060587 | MS.gene22897 | 0.823547 | 1.31E-53 | -1.69E-46 |
| MS.gene060803 | MS.gene22897 | 0.845904 | 3.04E-59 | -1.69E-46 |
| MS.gene061006 | MS.gene22897 | 0.808457 | 3.07E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22897.t1 | MTR_7g115580 | 99.189 | 370 | 3 | 0 | 1 | 370 | 315 | 684 | 0.0 | 748 |
| MS.gene22897.t1 | MTR_1g080310 | 66.402 | 378 | 82 | 6 | 1 | 370 | 289 | 629 | 3.12e-147 | 430 |
| MS.gene22897.t1 | MTR_1g046580 | 45.634 | 355 | 158 | 10 | 1 | 332 | 287 | 629 | 1.60e-83 | 267 |
| MS.gene22897.t1 | MTR_2g023450 | 34.884 | 344 | 140 | 7 | 2 | 334 | 296 | 566 | 2.42e-50 | 177 |
| MS.gene22897.t1 | MTR_1g046930 | 52.976 | 168 | 74 | 3 | 182 | 346 | 403 | 568 | 1.43e-46 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22897.t1 | AT3G04470 | 64.602 | 339 | 90 | 11 | 1 | 334 | 289 | 602 | 1.23e-123 | 370 |
| MS.gene22897.t1 | AT1G04780 | 42.781 | 374 | 152 | 13 | 1 | 332 | 289 | 642 | 4.40e-77 | 250 |
| MS.gene22897.t1 | AT3G24210 | 47.929 | 338 | 131 | 12 | 1 | 330 | 287 | 587 | 1.50e-69 | 229 |
| MS.gene22897.t1 | AT1G11740 | 50.617 | 162 | 61 | 3 | 186 | 329 | 365 | 525 | 1.93e-42 | 157 |
| MS.gene22897.t1 | AT1G62050 | 50.307 | 163 | 54 | 4 | 186 | 329 | 444 | 598 | 3.10e-41 | 153 |
Find 87 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTATGTTTCTTACTTT+TGG | 0.208116 | 7.3:-1970926 | None:intergenic |
| GATGGAGAAAGTATGATAAA+TGG | 0.236784 | 7.3:+1969088 | MS.gene22897:CDS |
| AAACATCAAAGAAAACTTCT+AGG | 0.244238 | 7.3:+1969362 | MS.gene22897:CDS |
| GACCGAGAGTGAGTATAAAA+AGG | 0.256596 | 7.3:+1969528 | MS.gene22897:CDS |
| TCCCCATAGTTCCTACTATC+AGG | 0.267052 | 7.3:+1970632 | MS.gene22897:CDS |
| ATCTCTGGTTGCTACCTTCT+GGG | 0.299862 | 7.3:-1969390 | None:intergenic |
| AATCTCTGGTTGCTACCTTC+TGG | 0.313191 | 7.3:-1969391 | None:intergenic |
| CCCCTCTGACTCCTTGGATT+TGG | 0.333083 | 7.3:-1970743 | None:intergenic |
| CACCCTGATAGTAGGAACTA+TGG | 0.343827 | 7.3:-1970635 | None:intergenic |
| ATGGAGAAAGTATGATAAAT+GGG | 0.345852 | 7.3:+1969089 | MS.gene22897:CDS |
| CTCTGACAGTCACAGATATA+AGG | 0.374610 | 7.3:+1970819 | MS.gene22897:CDS |
| GCATACCTGCAGACTACAAA+TGG | 0.384261 | 7.3:+1970860 | MS.gene22897:CDS |
| TCAAAGAAAACTTCTAGGTT+TGG | 0.392251 | 7.3:+1969367 | MS.gene22897:CDS |
| AAAGAGAAGAAGAGCTGGTT+TGG | 0.397445 | 7.3:+1969286 | MS.gene22897:CDS |
| GTGAAATCAAGACGGGTTCC+AGG | 0.400134 | 7.3:+1969031 | MS.gene22897:CDS |
| CGCGGACCCCTCTGACTCCT+TGG | 0.402033 | 7.3:-1970749 | None:intergenic |
| AAGCCGCCAGTGGCTAAATC+TGG | 0.402963 | 7.3:+1970946 | MS.gene22897:CDS |
| ATTGGCTTCAAAATTCTCAT+TGG | 0.403045 | 7.3:-1969254 | None:intergenic |
| GGGGTTGATGGTCAAGAAAA+TGG | 0.410732 | 7.3:+1969220 | MS.gene22897:CDS |
| ATTAGATTCTGCACTAAGAA+TGG | 0.414337 | 7.3:+1969162 | MS.gene22897:CDS |
| TTAGATTCTGCACTAAGAAT+GGG | 0.427745 | 7.3:+1969163 | MS.gene22897:CDS |
| GGTCCGCGTCATGGATTTCA+TGG | 0.439804 | 7.3:+1970764 | MS.gene22897:CDS |
| ATCTAATTGCATTCTTTCCT+CGG | 0.444640 | 7.3:-1969146 | None:intergenic |
| GATGAAGAGCATGGGGTTGA+TGG | 0.454083 | 7.3:+1969208 | MS.gene22897:CDS |
| TGAAAAGAAACGACGAATGA+AGG | 0.461496 | 7.3:+1970894 | MS.gene22897:CDS |
| TGAGGAGCTTCAGCCAATAG+AGG | 0.465572 | 7.3:+1970678 | MS.gene22897:CDS |
| AGTAATTGGATTACCTTGAC+AGG | 0.475426 | 7.3:-1969697 | None:intergenic |
| CTTCTCTTTAACCACACCAT+TGG | 0.475514 | 7.3:-1969272 | None:intergenic |
| AGAAGAAGAGCTGGTTTGGT+TGG | 0.486081 | 7.3:+1969290 | MS.gene22897:CDS |
| CATGGATGAAAGGAGGCCGC+GGG | 0.488594 | 7.3:+1970782 | MS.gene22897:CDS |
| AGAAGGTAGCAACCAGAGAT+TGG | 0.488917 | 7.3:+1969393 | MS.gene22897:CDS |
| ATCCTGAAAATGTGCAGGGC+TGG | 0.496055 | 7.3:-1970719 | None:intergenic |
| TTGGCATCCTGAAAATGTGC+AGG | 0.504120 | 7.3:-1970724 | None:intergenic |
| GGTGTTGAAAACTCCTCTAT+TGG | 0.505364 | 7.3:-1970691 | None:intergenic |
| ATACTATTCTTCTATGTCCT+CGG | 0.506001 | 7.3:-1970989 | None:intergenic |
| TCCACCCATTTGTAGTCTGC+AGG | 0.506940 | 7.3:-1970865 | None:intergenic |
| GTGACAAGCACCCTGATAGT+AGG | 0.507381 | 7.3:-1970643 | None:intergenic |
| ACCCTGATAGTAGGAACTAT+GGG | 0.510092 | 7.3:-1970634 | None:intergenic |
| AGTCAGAGGGGTCCGCGTCA+TGG | 0.512417 | 7.3:+1970755 | MS.gene22897:CDS |
| TCAGGCGTCAACCACAATAC+AGG | 0.522118 | 7.3:-1969559 | None:intergenic |
| TCATGGATGAAAGGAGGCCG+CGG | 0.523051 | 7.3:+1970781 | MS.gene22897:CDS |
| GAGTTTCTGAAGGATGATAG+TGG | 0.526156 | 7.3:+1969436 | MS.gene22897:CDS |
| TCTGTGACTGTCAGAGTCGC+TGG | 0.539332 | 7.3:-1970812 | None:intergenic |
| TGGTTAAAGAGAAGAAGAGC+TGG | 0.545487 | 7.3:+1969281 | MS.gene22897:CDS |
| ACTTCTAGGTTTGGCCCAGA+AGG | 0.545633 | 7.3:+1969376 | MS.gene22897:CDS |
| CCATCTCCAGATTTAGCCAC+TGG | 0.545865 | 7.3:-1970952 | None:intergenic |
| GGATGAAAGGAGGCCGCGGG+GGG | 0.547702 | 7.3:+1970785 | MS.gene22897:CDS |
| CATACCTGCAGACTACAAAT+GGG | 0.560618 | 7.3:+1970861 | MS.gene22897:CDS |
| CCCCATAGTTCCTACTATCA+GGG | 0.568271 | 7.3:+1970633 | MS.gene22897:CDS |
| TGATAGTGGAGACACCAAGA+AGG | 0.572604 | 7.3:+1969450 | MS.gene22897:CDS |
| TTTGCTAAAATGTCAAGTAG+AGG | 0.583134 | 7.3:-1969610 | None:intergenic |
| TCATGGATTTCATGGATGAA+AGG | 0.583566 | 7.3:+1970772 | MS.gene22897:CDS |
| CCAGTGGCTAAATCTGGAGA+TGG | 0.587770 | 7.3:+1970952 | MS.gene22897:CDS |
| ACTATCATCCTTCAGAAACT+CGG | 0.589398 | 7.3:-1969434 | None:intergenic |
| TGCCAAATCCAAGGAGTCAG+AGG | 0.590771 | 7.3:+1970741 | MS.gene22897:CDS |
| TTATGACATGCTTAATGTGA+TGG | 0.591587 | 7.3:+1969003 | MS.gene22897:CDS |
| TCTTCATCTGTCATAGCACC+TGG | 0.595571 | 7.3:-1969049 | None:intergenic |
| AAGTAGAGGCAGAAGTTCGT+CGG | 0.598695 | 7.3:-1969596 | None:intergenic |
| GATAGCATCCGAGTTTCTGA+AGG | 0.602685 | 7.3:+1969426 | MS.gene22897:CDS |
| GCCAAATCCAAGGAGTCAGA+GGG | 0.603764 | 7.3:+1970742 | MS.gene22897:CDS |
| TTGACAACTAAGCTTCCTCA+AGG | 0.610439 | 7.3:+1969667 | MS.gene22897:CDS |
| CTTGTGAAGATGAAGAGCAT+GGG | 0.612831 | 7.3:+1969200 | MS.gene22897:CDS |
| TGGAGACACCAAGAAGGGAA+AGG | 0.612892 | 7.3:+1969456 | MS.gene22897:CDS |
| AGGGTTTAAGACCTGTATTG+TGG | 0.615301 | 7.3:+1969548 | MS.gene22897:CDS |
| TGGATGAAAGGAGGCCGCGG+GGG | 0.616484 | 7.3:+1970784 | MS.gene22897:CDS |
| TAGTCTGCAGGTATGCTGAA+AGG | 0.618074 | 7.3:-1970853 | None:intergenic |
| TGGAGAAAGTATGATAAATG+GGG | 0.636930 | 7.3:+1969090 | MS.gene22897:CDS |
| AAATGTGCAGGGCTGGAAAG+TGG | 0.638368 | 7.3:-1970712 | None:intergenic |
| ATGGATGAAAGGAGGCCGCG+GGG | 0.640437 | 7.3:+1970783 | MS.gene22897:CDS |
| GCTTGTGAAGATGAAGAGCA+TGG | 0.641106 | 7.3:+1969199 | MS.gene22897:CDS |
| ACCTGCAGACTACAAATGGG+TGG | 0.645216 | 7.3:+1970864 | MS.gene22897:CDS |
| GGTGAGTGTGAAATCAAGAC+GGG | 0.645852 | 7.3:+1969024 | MS.gene22897:CDS |
| TAGATTCTGCACTAAGAATG+GGG | 0.645940 | 7.3:+1969164 | MS.gene22897:CDS |
| TCTCCAGATTTAGCCACTGG+CGG | 0.652510 | 7.3:-1970949 | None:intergenic |
| TGGATTTCATGGATGAAAGG+AGG | 0.654440 | 7.3:+1970775 | MS.gene22897:CDS |
| GATAGTGGAGACACCAAGAA+GGG | 0.657063 | 7.3:+1969451 | MS.gene22897:CDS |
| CATCCATGAAATCCATGACG+CGG | 0.674845 | 7.3:-1970767 | None:intergenic |
| CGATGATGTACTGACTGCCG+AGG | 0.679874 | 7.3:+1969129 | MS.gene22897:CDS |
| TGGCATCCTGAAAATGTGCA+GGG | 0.686298 | 7.3:-1970723 | None:intergenic |
| TTGACAGGAAAAGTTCCTTG+AGG | 0.686960 | 7.3:-1969682 | None:intergenic |
| CAACAGTGATGATCCTCCAG+AGG | 0.688662 | 7.3:+1969333 | MS.gene22897:CDS |
| GAAACATAAGAAGCCGCCAG+TGG | 0.688809 | 7.3:+1970936 | MS.gene22897:CDS |
| TGGTGAGTGTGAAATCAAGA+CGG | 0.693259 | 7.3:+1969023 | MS.gene22897:CDS |
| CCCTGATAGTAGGAACTATG+GGG | 0.713342 | 7.3:-1970633 | None:intergenic |
| TTGTGAAGATGAAGAGCATG+GGG | 0.728753 | 7.3:+1969201 | MS.gene22897:CDS |
| CCAAATCCAAGGAGTCAGAG+GGG | 0.750244 | 7.3:+1970743 | MS.gene22897:CDS |
| TGGAGTGCATCGCAGCACCG+AGG | 0.755647 | 7.3:+1970972 | MS.gene22897:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAAATTATATCTAAGTGT+TGG | + | chr7.3:1970319-1970338 | MS.gene22897:intron | 20.0% |
| !! | ATCATTATAAAGAACTAGAA+TGG | - | chr7.3:1970411-1970430 | None:intergenic | 20.0% |
| !! | ATTAAAAAGAAGAAGAAGAA+AGG | + | chr7.3:1969487-1969506 | MS.gene22897:CDS | 20.0% |
| !!! | TAATGACATTTGATTTTGAA+TGG | + | chr7.3:1970576-1970595 | MS.gene22897:intron | 20.0% |
| ! | AAACATCAAAGAAAACTTCT+AGG | + | chr7.3:1969362-1969381 | MS.gene22897:CDS | 25.0% |
| ! | AAGTATCATGTGATGATTAT+AGG | - | chr7.3:1969999-1970018 | None:intergenic | 25.0% |
| ! | GTAACTTTGGTTATAGTAAT+TGG | - | chr7.3:1969714-1969733 | None:intergenic | 25.0% |
| ! | GTCATTATAAAGAACAGTAA+TGG | - | chr7.3:1970563-1970582 | None:intergenic | 25.0% |
| !! | ATGGAGAAAGTATGATAAAT+GGG | + | chr7.3:1969089-1969108 | MS.gene22897:CDS | 25.0% |
| !! | CTTCTTATGTTTCTTACTTT+TGG | - | chr7.3:1970929-1970948 | None:intergenic | 25.0% |
| !!! | ACTTGACATTTTAGCAAATA+AGG | + | chr7.3:1969615-1969634 | MS.gene22897:CDS | 25.0% |
| !!! | TGTCACTTTTACAAAATTTG+AGG | + | chr7.3:1970660-1970679 | MS.gene22897:CDS | 25.0% |
| !!! | TTTGATGTTTTTAAATCCTC+TGG | - | chr7.3:1969352-1969371 | None:intergenic | 25.0% |
| ACCTGATAAACATCTGAATT+TGG | + | chr7.3:1969851-1969870 | MS.gene22897:intron | 30.0% | |
| ATCCATTCCTGTTCTTTATA+AGG | + | chr7.3:1970482-1970501 | MS.gene22897:intron | 30.0% | |
| ATCTAATTGCATTCTTTCCT+CGG | - | chr7.3:1969149-1969168 | None:intergenic | 30.0% | |
| ATCTATGATAAGTCAAATCC+AGG | - | chr7.3:1970229-1970248 | None:intergenic | 30.0% | |
| ATGATCTTAGTCATACAACT+GGG | - | chr7.3:1970261-1970280 | None:intergenic | 30.0% | |
| ATGTGTCTGTTTCAATTATC+TGG | + | chr7.3:1969915-1969934 | MS.gene22897:intron | 30.0% | |
| ATTAGATTCTGCACTAAGAA+TGG | + | chr7.3:1969162-1969181 | MS.gene22897:CDS | 30.0% | |
| CATAAGGCAAAATGAATAGA+AGG | - | chr7.3:1970163-1970182 | None:intergenic | 30.0% | |
| GCATAAAAAGTTCGTAACTT+TGG | - | chr7.3:1969727-1969746 | None:intergenic | 30.0% | |
| TATGACTAAGATCATCAATC+TGG | + | chr7.3:1970266-1970285 | MS.gene22897:intron | 30.0% | |
| TCAAAGAAAACTTCTAGGTT+TGG | + | chr7.3:1969367-1969386 | MS.gene22897:CDS | 30.0% | |
| TTAGATTCTGCACTAAGAAT+GGG | + | chr7.3:1969163-1969182 | MS.gene22897:CDS | 30.0% | |
| TTATGACATGCTTAATGTGA+TGG | + | chr7.3:1969003-1969022 | MS.gene22897:CDS | 30.0% | |
| TTTGCTAAAATGTCAAGTAG+AGG | - | chr7.3:1969613-1969632 | None:intergenic | 30.0% | |
| ! | ATTGGCTTCAAAATTCTCAT+TGG | - | chr7.3:1969257-1969276 | None:intergenic | 30.0% |
| ! | GATGGAGAAAGTATGATAAA+TGG | + | chr7.3:1969088-1969107 | MS.gene22897:CDS | 30.0% |
| ! | TGGAGAAAGTATGATAAATG+GGG | + | chr7.3:1969090-1969109 | MS.gene22897:CDS | 30.0% |
| !!! | AATGAGAATTTTGAAGCCAA+TGG | + | chr7.3:1969256-1969275 | MS.gene22897:CDS | 30.0% |
| AACTGACAGAACTCTTCATA+AGG | - | chr7.3:1970179-1970198 | None:intergenic | 35.0% | |
| AATTGGGTGATTATTACACC+TGG | + | chr7.3:1970208-1970227 | MS.gene22897:intron | 35.0% | |
| ACCGAGAGTGAGTATAAAAA+GGG | + | chr7.3:1969529-1969548 | MS.gene22897:CDS | 35.0% | |
| ACTAAGATCATCAATCTGGT+TGG | + | chr7.3:1970270-1970289 | MS.gene22897:intron | 35.0% | |
| ACTATCATCCTTCAGAAACT+CGG | - | chr7.3:1969437-1969456 | None:intergenic | 35.0% | |
| AGATGACCTGATAAACTTGT+CGG | + | chr7.3:1970109-1970128 | MS.gene22897:intron | 35.0% | |
| AGTAATTGGATTACCTTGAC+AGG | - | chr7.3:1969700-1969719 | None:intergenic | 35.0% | |
| CTCCTTATAAAGAACAGGAA+TGG | - | chr7.3:1970487-1970506 | None:intergenic | 35.0% | |
| GAAAAACCGACAAGTTTATC+AGG | - | chr7.3:1970118-1970137 | None:intergenic | 35.0% | |
| GATGATCTTAGTCATACAAC+TGG | - | chr7.3:1970262-1970281 | None:intergenic | 35.0% | |
| GCCAAATTCAGATGTTTATC+AGG | - | chr7.3:1969855-1969874 | None:intergenic | 35.0% | |
| TAGATTCTGCACTAAGAATG+GGG | + | chr7.3:1969164-1969183 | MS.gene22897:CDS | 35.0% | |
| TCAAGCTCCTTATAAAGAAC+AGG | - | chr7.3:1970492-1970511 | None:intergenic | 35.0% | |
| TCATGGATTTCATGGATGAA+AGG | + | chr7.3:1970772-1970791 | MS.gene22897:CDS | 35.0% | |
| TGAAAAGAAACGACGAATGA+AGG | + | chr7.3:1970894-1970913 | MS.gene22897:CDS | 35.0% | |
| TGAAGAAGAGCAGTAAATCT+TGG | - | chr7.3:1970090-1970109 | None:intergenic | 35.0% | |
| TGATCTTAGTCATACAACTG+GGG | - | chr7.3:1970260-1970279 | None:intergenic | 35.0% | |
| TTATGAAGAGTTCTGTCAGT+TGG | + | chr7.3:1970178-1970197 | MS.gene22897:intron | 35.0% | |
| ! | ACCCTTTTTATACTCACTCT+CGG | - | chr7.3:1969533-1969552 | None:intergenic | 35.0% |
| ! | CATTCGTCGTTTCTTTTCAT+TGG | - | chr7.3:1970893-1970912 | None:intergenic | 35.0% |
| ! | GTTTTTATCCTTTCCCTTCT+TGG | - | chr7.3:1969467-1969486 | None:intergenic | 35.0% |
| !! | GATGTTTTTAAATCCTCTGG+AGG | - | chr7.3:1969349-1969368 | None:intergenic | 35.0% |
| AAAGAGAAGAAGAGCTGGTT+TGG | + | chr7.3:1969286-1969305 | MS.gene22897:CDS | 40.0% | |
| AATAATCTCTTGTGCTGCAC+AGG | + | chr7.3:1970603-1970622 | MS.gene22897:intron | 40.0% | |
| ACCCTGATAGTAGGAACTAT+GGG | - | chr7.3:1970637-1970656 | None:intergenic | 40.0% | |
| AGGCAAAATGAATAGAAGGC+AGG | - | chr7.3:1970159-1970178 | None:intergenic | 40.0% | |
| CAAAATGAATAGAAGGCAGG+GGG | - | chr7.3:1970156-1970175 | None:intergenic | 40.0% | |
| CATACCTGCAGACTACAAAT+GGG | + | chr7.3:1970861-1970880 | MS.gene22897:CDS | 40.0% | |
| CTCTGACAGTCACAGATATA+AGG | + | chr7.3:1970819-1970838 | MS.gene22897:CDS | 40.0% | |
| CTTCTCTTTAACCACACCAT+TGG | - | chr7.3:1969275-1969294 | None:intergenic | 40.0% | |
| GACCGAGAGTGAGTATAAAA+AGG | + | chr7.3:1969528-1969547 | MS.gene22897:CDS | 40.0% | |
| GCAAAATGAATAGAAGGCAG+GGG | - | chr7.3:1970157-1970176 | None:intergenic | 40.0% | |
| GGCAAAATGAATAGAAGGCA+GGG | - | chr7.3:1970158-1970177 | None:intergenic | 40.0% | |
| GTCAGTTGGCAGAGAAAATT+GGG | + | chr7.3:1970192-1970211 | MS.gene22897:intron | 40.0% | |
| TACCTGTAGTTGCCTTCTAT+GGG | + | chr7.3:1969789-1969808 | MS.gene22897:intron | 40.0% | |
| TGGATTTCATGGATGAAAGG+AGG | + | chr7.3:1970775-1970794 | MS.gene22897:CDS | 40.0% | |
| TGGTGAGTGTGAAATCAAGA+CGG | + | chr7.3:1969023-1969042 | MS.gene22897:CDS | 40.0% | |
| TGGTTAAAGAGAAGAAGAGC+TGG | + | chr7.3:1969281-1969300 | MS.gene22897:CDS | 40.0% | |
| TGTCAGTTGGCAGAGAAAAT+TGG | + | chr7.3:1970191-1970210 | MS.gene22897:intron | 40.0% | |
| TTACCTGTAGTTGCCTTCTA+TGG | + | chr7.3:1969788-1969807 | MS.gene22897:intron | 40.0% | |
| TTGACAACTAAGCTTCCTCA+AGG | + | chr7.3:1969667-1969686 | MS.gene22897:CDS | 40.0% | |
| TTGACAGGAAAAGTTCCTTG+AGG | - | chr7.3:1969685-1969704 | None:intergenic | 40.0% | |
| ! | AGATGAAGAGCTTTTTGCTG+TGG | + | chr7.3:1969063-1969082 | MS.gene22897:CDS | 40.0% |
| ! | AGGGTTTAAGACCTGTATTG+TGG | + | chr7.3:1969548-1969567 | MS.gene22897:CDS | 40.0% |
| ! | CTTGTGAAGATGAAGAGCAT+GGG | + | chr7.3:1969200-1969219 | MS.gene22897:CDS | 40.0% |
| ! | GAGTTTCTGAAGGATGATAG+TGG | + | chr7.3:1969436-1969455 | MS.gene22897:CDS | 40.0% |
| ! | GGTGTTGAAAACTCCTCTAT+TGG | - | chr7.3:1970694-1970713 | None:intergenic | 40.0% |
| ! | TCAAGGAACTTTTCCTGTCA+AGG | + | chr7.3:1969684-1969703 | MS.gene22897:CDS | 40.0% |
| ! | TCTTTTGATCAGCCAATCTC+TGG | - | chr7.3:1969408-1969427 | None:intergenic | 40.0% |
| ! | TTGTGAAGATGAAGAGCATG+GGG | + | chr7.3:1969201-1969220 | MS.gene22897:CDS | 40.0% |
| !! | TTTTCAGGATGCCAAATCCA+AGG | + | chr7.3:1970732-1970751 | MS.gene22897:CDS | 40.0% |
| !!! | AGAAGTTCGTCGGTTTTCAA+TGG | - | chr7.3:1969589-1969608 | None:intergenic | 40.0% |
| !!! | GAAGTTCGTCGGTTTTCAAT+GGG | - | chr7.3:1969588-1969607 | None:intergenic | 40.0% |
| !!! | GAATTTTGAAGCCAATGGTG+TGG | + | chr7.3:1969261-1969280 | MS.gene22897:CDS | 40.0% |
| AAGTAGAGGCAGAAGTTCGT+CGG | - | chr7.3:1969599-1969618 | None:intergenic | 45.0% | |
| AATCTCTGGTTGCTACCTTC+TGG | - | chr7.3:1969394-1969413 | None:intergenic | 45.0% | |
| AGAAGGTAGCAACCAGAGAT+TGG | + | chr7.3:1969393-1969412 | MS.gene22897:CDS | 45.0% | |
| AGTTGTGAAACCTAAGCGAC+TGG | - | chr7.3:1969877-1969896 | None:intergenic | 45.0% | |
| ATCTCTGGTTGCTACCTTCT+GGG | - | chr7.3:1969393-1969412 | None:intergenic | 45.0% | |
| CACCCTGATAGTAGGAACTA+TGG | - | chr7.3:1970638-1970657 | None:intergenic | 45.0% | |
| CATCCATGAAATCCATGACG+CGG | - | chr7.3:1970770-1970789 | None:intergenic | 45.0% | |
| CCCCATAGTTCCTACTATCA+GGG | + | chr7.3:1970633-1970652 | MS.gene22897:CDS | 45.0% | |
| CCCTGATAGTAGGAACTATG+GGG | - | chr7.3:1970636-1970655 | None:intergenic | 45.0% | |
| GATAGCATCCGAGTTTCTGA+AGG | + | chr7.3:1969426-1969445 | MS.gene22897:CDS | 45.0% | |
| GCATACCTGCAGACTACAAA+TGG | + | chr7.3:1970860-1970879 | MS.gene22897:CDS | 45.0% | |
| GCTTGTGAAGATGAAGAGCA+TGG | + | chr7.3:1969199-1969218 | MS.gene22897:CDS | 45.0% | |
| GGTGAGTGTGAAATCAAGAC+GGG | + | chr7.3:1969024-1969043 | MS.gene22897:CDS | 45.0% | |
| TAGTCTGCAGGTATGCTGAA+AGG | - | chr7.3:1970856-1970875 | None:intergenic | 45.0% | |
| TCCCCATAGTTCCTACTATC+AGG | + | chr7.3:1970632-1970651 | MS.gene22897:CDS | 45.0% | |
| TCTTCATCTGTCATAGCACC+TGG | - | chr7.3:1969052-1969071 | None:intergenic | 45.0% | |
| TGGCATCCTGAAAATGTGCA+GGG | - | chr7.3:1970726-1970745 | None:intergenic | 45.0% | |
| TTGGCATCCTGAAAATGTGC+AGG | - | chr7.3:1970727-1970746 | None:intergenic | 45.0% | |
| ! | ATGTGTCACTCTTTGTGCTG+TGG | + | chr7.3:1970373-1970392 | MS.gene22897:intron | 45.0% |
| ! | TCGGTTTTCAATGGGAAGTC+AGG | - | chr7.3:1969580-1969599 | None:intergenic | 45.0% |
| !! | AGAAGAAGAGCTGGTTTGGT+TGG | + | chr7.3:1969290-1969309 | MS.gene22897:CDS | 45.0% |
| !! | GATAGTGGAGACACCAAGAA+GGG | + | chr7.3:1969451-1969470 | MS.gene22897:CDS | 45.0% |
| !! | GGGGTTGATGGTCAAGAAAA+TGG | + | chr7.3:1969220-1969239 | MS.gene22897:CDS | 45.0% |
| !! | TGAAGAGCTTTTTGCTGTGG+AGG | + | chr7.3:1969066-1969085 | MS.gene22897:CDS | 45.0% |
| !! | TGATAGTGGAGACACCAAGA+AGG | + | chr7.3:1969450-1969469 | MS.gene22897:CDS | 45.0% |
| AAATGTGCAGGGCTGGAAAG+TGG | - | chr7.3:1970715-1970734 | None:intergenic | 50.0% | |
| AATGAATAGAAGGCAGGGGG+CGG | - | chr7.3:1970153-1970172 | None:intergenic | 50.0% | |
| ACCTGCAGACTACAAATGGG+TGG | + | chr7.3:1970864-1970883 | MS.gene22897:CDS | 50.0% | |
| ACTTCTAGGTTTGGCCCAGA+AGG | + | chr7.3:1969376-1969395 | MS.gene22897:CDS | 50.0% | |
| ATCCTGAAAATGTGCAGGGC+TGG | - | chr7.3:1970722-1970741 | None:intergenic | 50.0% | |
| CAACAGTGATGATCCTCCAG+AGG | + | chr7.3:1969333-1969352 | MS.gene22897:CDS | 50.0% | |
| CCAAATCCAAGGAGTCAGAG+GGG | + | chr7.3:1970743-1970762 | MS.gene22897:CDS | 50.0% | |
| CCAGTGGCTAAATCTGGAGA+TGG | + | chr7.3:1970952-1970971 | MS.gene22897:CDS | 50.0% | |
| CCATCTCCAGATTTAGCCAC+TGG | - | chr7.3:1970955-1970974 | None:intergenic | 50.0% | |
| CTGAATTTGGCCAGTCGCTT+AGG | + | chr7.3:1969864-1969883 | MS.gene22897:intron | 50.0% | |
| GAAACATAAGAAGCCGCCAG+TGG | + | chr7.3:1970936-1970955 | MS.gene22897:CDS | 50.0% | |
| GCCAAATCCAAGGAGTCAGA+GGG | + | chr7.3:1970742-1970761 | MS.gene22897:CDS | 50.0% | |
| GTGACAAGCACCCTGATAGT+AGG | - | chr7.3:1970646-1970665 | None:intergenic | 50.0% | |
| TCAGGCGTCAACCACAATAC+AGG | - | chr7.3:1969562-1969581 | None:intergenic | 50.0% | |
| TCCACCCATTTGTAGTCTGC+AGG | - | chr7.3:1970868-1970887 | None:intergenic | 50.0% | |
| TCTCCAGATTTAGCCACTGG+CGG | - | chr7.3:1970952-1970971 | None:intergenic | 50.0% | |
| TGAGGAGCTTCAGCCAATAG+AGG | + | chr7.3:1970678-1970697 | MS.gene22897:CDS | 50.0% | |
| TGCCAAATCCAAGGAGTCAG+AGG | + | chr7.3:1970741-1970760 | MS.gene22897:CDS | 50.0% | |
| TGCCCATAGAAGGCAACTAC+AGG | - | chr7.3:1969794-1969813 | None:intergenic | 50.0% | |
| TGGAGACACCAAGAAGGGAA+AGG | + | chr7.3:1969456-1969475 | MS.gene22897:CDS | 50.0% | |
| ! | GATGAAGAGCATGGGGTTGA+TGG | + | chr7.3:1969208-1969227 | MS.gene22897:CDS | 50.0% |
| ! | GTGAAATCAAGACGGGTTCC+AGG | + | chr7.3:1969031-1969050 | MS.gene22897:CDS | 50.0% |
| ! | GTGTGTCACTCTTTGTGCTG+TGG | + | chr7.3:1970449-1970468 | MS.gene22897:intron | 50.0% |
| ! | TTCCAGCCCTGCACATTTTC+AGG | + | chr7.3:1970717-1970736 | MS.gene22897:CDS | 50.0% |
| !! | GAGCTTTTTGCTGTGGAGGA+TGG | + | chr7.3:1969070-1969089 | MS.gene22897:CDS | 50.0% |
| AAGCCGCCAGTGGCTAAATC+TGG | + | chr7.3:1970946-1970965 | MS.gene22897:CDS | 55.0% | |
| ATGAATAGAAGGCAGGGGGC+GGG | - | chr7.3:1970152-1970171 | None:intergenic | 55.0% | |
| CCCCTCTGACTCCTTGGATT+TGG | - | chr7.3:1970746-1970765 | None:intergenic | 55.0% | |
| GGTCCGCGTCATGGATTTCA+TGG | + | chr7.3:1970764-1970783 | MS.gene22897:CDS | 55.0% | |
| GTTGCCTTCTATGGGCAGTG+CGG | + | chr7.3:1969797-1969816 | MS.gene22897:intron | 55.0% | |
| TATCCCGCACTGCCCATAGA+AGG | - | chr7.3:1969804-1969823 | None:intergenic | 55.0% | |
| TCATGGATGAAAGGAGGCCG+CGG | + | chr7.3:1970781-1970800 | MS.gene22897:CDS | 55.0% | |
| TCTGTGACTGTCAGAGTCGC+TGG | - | chr7.3:1970815-1970834 | None:intergenic | 55.0% | |
| TTGCCTTCTATGGGCAGTGC+GGG | + | chr7.3:1969798-1969817 | MS.gene22897:intron | 55.0% | |
| !! | CGATGATGTACTGACTGCCG+AGG | + | chr7.3:1969129-1969148 | MS.gene22897:CDS | 55.0% |
| ATGGATGAAAGGAGGCCGCG+GGG | + | chr7.3:1970783-1970802 | MS.gene22897:CDS | 60.0% | |
| CATGGATGAAAGGAGGCCGC+GGG | + | chr7.3:1970782-1970801 | MS.gene22897:CDS | 60.0% | |
| TGAATAGAAGGCAGGGGGCG+GGG | - | chr7.3:1970151-1970170 | None:intergenic | 60.0% | |
| AGTCAGAGGGGTCCGCGTCA+TGG | + | chr7.3:1970755-1970774 | MS.gene22897:CDS | 65.0% | |
| CAGGGGGCGGGGATGAAAAC+TGG | - | chr7.3:1970140-1970159 | None:intergenic | 65.0% | |
| TGGAGTGCATCGCAGCACCG+AGG | + | chr7.3:1970972-1970991 | MS.gene22897:CDS | 65.0% | |
| TGGATGAAAGGAGGCCGCGG+GGG | + | chr7.3:1970784-1970803 | MS.gene22897:CDS | 65.0% | |
| CGCGGACCCCTCTGACTCCT+TGG | - | chr7.3:1970752-1970771 | None:intergenic | 70.0% | |
| GGATGAAAGGAGGCCGCGGG+GGG | + | chr7.3:1970785-1970804 | MS.gene22897:CDS | 70.0% | |
| AGTCGCTGGACTGCCCCCCG+CGG | - | chr7.3:1970801-1970820 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 1968977 | 1971008 | 1968977 | ID=MS.gene22897 |
| chr7.3 | mRNA | 1968977 | 1971008 | 1968977 | ID=MS.gene22897.t1;Parent=MS.gene22897 |
| chr7.3 | exon | 1968977 | 1969705 | 1968977 | ID=MS.gene22897.t1.exon1;Parent=MS.gene22897.t1 |
| chr7.3 | CDS | 1968977 | 1969705 | 1968977 | ID=cds.MS.gene22897.t1;Parent=MS.gene22897.t1 |
| chr7.3 | exon | 1970625 | 1971008 | 1970625 | ID=MS.gene22897.t1.exon2;Parent=MS.gene22897.t1 |
| chr7.3 | CDS | 1970625 | 1971008 | 1970625 | ID=cds.MS.gene22897.t1;Parent=MS.gene22897.t1 |
| Gene Sequence |
| Protein sequence |
