AlfalfaGEDB | MS.gene22897

M. sativa cultivar XinJiangDaYe / MS.gene22897

KEGG: K21437
GO: -
PFAM: PF11904.11

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22897.t1	XP_013450565.1	99.2	370	3	0	1	370	315	684	2.80E-177	631.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22897.t1	Q7ZUV0	44.6	74	39	2	188	261	391	462	3.0e-07	57.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22897.t1	A0A072U620	99.2	370	3	0	1	370	315	684	2.0e-177	631.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene22897	0.824813	6.58E-54	-1.69E-46
MS.gene049159	MS.gene22897	0.832043	1.18E-55	-1.69E-46
MS.gene049341	MS.gene22897	0.816283	5.99E-52	-1.69E-46
MS.gene049501	MS.gene22897	0.813701	2.24E-51	-1.69E-46
MS.gene049850	MS.gene22897	0.816841	4.49E-52	-1.69E-46
MS.gene049887	MS.gene22897	0.8327	8.14E-56	-1.69E-46
MS.gene050020	MS.gene22897	0.835059	2.09E-56	-1.69E-46
MS.gene050442	MS.gene22897	0.809292	2.03E-50	-1.69E-46
MS.gene050586	MS.gene22897	0.808149	3.57E-50	-1.69E-46
MS.gene050689	MS.gene22897	0.821088	4.86E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22897.t1	MTR_7g115580	99.189	370	3	0	1	370	315	684	0.0	748
MS.gene22897.t1	MTR_1g080310	66.402	378	82	6	1	370	289	629	3.12e-147	430
MS.gene22897.t1	MTR_1g046580	45.634	355	158	10	1	332	287	629	1.60e-83	267
MS.gene22897.t1	MTR_2g023450	34.884	344	140	7	2	334	296	566	2.42e-50	177
MS.gene22897.t1	MTR_1g046930	52.976	168	74	3	182	346	403	568	1.43e-46	167

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22897.t1	AT3G04470	64.602	339	90	11	1	334	289	602	1.23e-123	370
MS.gene22897.t1	AT1G04780	42.781	374	152	13	1	332	289	642	4.40e-77	250
MS.gene22897.t1	AT3G24210	47.929	338	131	12	1	330	287	587	1.50e-69	229
MS.gene22897.t1	AT1G11740	50.617	162	61	3	186	329	365	525	1.93e-42	157
MS.gene22897.t1	AT1G62050	50.307	163	54	4	186	329	444	598	3.10e-41	153

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Find 87 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATCAAAGAAAACTTCT+AGG	0.244238	7.3:+1969362	MS.gene22897:CDS
AAAGAGAAGAAGAGCTGGTT+TGG	0.397445	7.3:+1969286	MS.gene22897:CDS
AAATGTGCAGGGCTGGAAAG+TGG	0.638368	7.3:-1970712	None:intergenic
AAGCCGCCAGTGGCTAAATC+TGG	0.402963	7.3:+1970946	MS.gene22897:CDS
AAGTAGAGGCAGAAGTTCGT+CGG	0.598695	7.3:-1969596	None:intergenic
AATCTCTGGTTGCTACCTTC+TGG	0.313191	7.3:-1969391	None:intergenic
ACCCTGATAGTAGGAACTAT+GGG	0.510092	7.3:-1970634	None:intergenic
ACCTGCAGACTACAAATGGG+TGG	0.645216	7.3:+1970864	MS.gene22897:CDS
ACTATCATCCTTCAGAAACT+CGG	0.589398	7.3:-1969434	None:intergenic
ACTTCTAGGTTTGGCCCAGA+AGG	0.545633	7.3:+1969376	MS.gene22897:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACCTGATAAACATCTGAATT+TGG	+	chr7.3:1969851-1969870	MS.gene22897:intron	30.0%
ATCCATTCCTGTTCTTTATA+AGG	+	chr7.3:1970482-1970501	MS.gene22897:intron	30.0%
ATCTAATTGCATTCTTTCCT+CGG	-	chr7.3:1969149-1969168	None:intergenic	30.0%
ATCTATGATAAGTCAAATCC+AGG	-	chr7.3:1970229-1970248	None:intergenic	30.0%
ATGATCTTAGTCATACAACT+GGG	-	chr7.3:1970261-1970280	None:intergenic	30.0%
ATGTGTCTGTTTCAATTATC+TGG	+	chr7.3:1969915-1969934	MS.gene22897:intron	30.0%
ATTAGATTCTGCACTAAGAA+TGG	+	chr7.3:1969162-1969181	MS.gene22897:CDS	30.0%
CATAAGGCAAAATGAATAGA+AGG	-	chr7.3:1970163-1970182	None:intergenic	30.0%
GCATAAAAAGTTCGTAACTT+TGG	-	chr7.3:1969727-1969746	None:intergenic	30.0%
TATGACTAAGATCATCAATC+TGG	+	chr7.3:1970266-1970285	MS.gene22897:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	1968977	1971008	1968977	ID=MS.gene22897
chr7.3	mRNA	1968977	1971008	1968977	ID=MS.gene22897.t1;Parent=MS.gene22897
chr7.3	exon	1968977	1969705	1968977	ID=MS.gene22897.t1.exon1;Parent=MS.gene22897.t1
chr7.3	CDS	1968977	1969705	1968977	ID=cds.MS.gene22897.t1;Parent=MS.gene22897.t1
chr7.3	exon	1970625	1971008	1970625	ID=MS.gene22897.t1.exon2;Parent=MS.gene22897.t1
chr7.3	CDS	1970625	1971008	1970625	ID=cds.MS.gene22897.t1;Parent=MS.gene22897.t1

Gene Sequence

>MS.gene22897

ATGGTTGGGAATTGGAAAGCAAAAGTTTATGACATGCTTAATGTGATGGTGAGTGTGAAATCAAGACGGGTTCCAGGTGCTATGACAGATGAAGAGCTTTTTGCTGTGGAGGATGGAGAAAGTATGATAAATGGGGAAAACAATGATGAGTACGATGATGTACTGACTGCCGAGGAAAGAATGCAATTAGATTCTGCACTAAGAATGGGGAACTCTGACGCTGCTTGTGAAGATGAAGAGCATGGGGTTGATGGTCAAGAAAATGGTTCATCAGCTTCCAATGAGAATTTTGAAGCCAATGGTGTGGTTAAAGAGAAGAAGAGCTGGTTTGGTTGGAACAAGAAAAGTTTGAAAAGCAACAGTGATGATCCTCCAGAGGATTTAAAAACATCAAAGAAAACTTCTAGGTTTGGCCCAGAAGGTAGCAACCAGAGATTGGCTGATCAAAAGATAGCATCCGAGTTTCTGAAGGATGATAGTGGAGACACCAAGAAGGGAAAGGATAAAAACATTAAAAAGAAGAAGAAGAAAGGAGCAGTTAGCGAGACTAAGACCGAGAGTGAGTATAAAAAGGGTTTAAGACCTGTATTGTGGTTGACGCCTGACTTCCCATTGAAAACCGACGAACTTCTGCCTCTACTTGACATTTTAGCAAATAAGGTTAAAGCTATCAGAAGACTACGAGAGCTTTTGACAACTAAGCTTCCTCAAGGAACTTTTCCTGTCAAGGTAATCCAATTACTATAACCAAAGTTACGAACTTTTTATGCACTGTTGCTCTGCACTCTATCAGCACAACAGAGTGCTCATGTTACCTGTAGTTGCCTTCTATGGGCAGTGCGGGATAAATCTTTTATATTTCTTAGTAAAATATACCTGATAAACATCTGAATTTGGCCAGTCGCTTAGGTTTCACAACTGTTTGAGATTCTGATCACATGTGTCTGTTTCAATTATCTGGTCATTCTTGTATAAGTATTGACATTTGTGCATGAGTATATTTTTAATGTCTTGTATGACCTATAATCATCACATGATACTTTTGTTATTGTTGATGTTATTTTAATCATGTCAAGCTACAACGATACAAAAACTGTTTCGTGTGCAAATCCAAGATTTACTGCTCTTCTTCAGATGACCTGATAAACTTGTCGGTTTTTCCAGTTTTCATCCCCGCCCCCTGCCTTCTATTCATTTTGCCTTATGAAGAGTTCTGTCAGTTGGCAGAGAAAATTGGGTGATTATTACACCTGGATTTGACTTATCATAGATTAGTTATGCCCCAGTTGTATGACTAAGATCATCAATCTGGTTGGCTTATCTCGACATAAACTTCAGAGAAATCAAATTATATCTAAGTGTTGGCGCGATAATATTGAGCTTGATTACTGCATGTATGTGTCACTCTTTGTGCTGTGGCATATTCATCATCCATTCTAGTTCTTTATAATGATCTTGATTTATGCGTGTCTGTGTGTCACTCTTTGTGCTGTGGCATGTTCATCATCCATTCCTGTTCTTTATAAGGAGCTTGATTTCTGCATGTCTATGTGTCACTCTTTGTGCTGTGGCATGTTCATCATCCATTACTGTTCTTTATAATGACATTTGATTTTGAATGGTAATAATAATCTCTTGTGCTGCACAGGTTGCTATCCCCATAGTTCCTACTATCAGGGTGCTTGTCACTTTTACAAAATTTGAGGAGCTTCAGCCAATAGAGGAGTTTTCAACACCACTTTCCAGCCCTGCACATTTTCAGGATGCCAAATCCAAGGAGTCAGAGGGGTCCGCGTCATGGATTTCATGGATGAAAGGAGGCCGCGGGGGGCAGTCCAGCGACTCTGACAGTCACAGATATAAGGATGAAGCTGATCCTTTCAGCATACCTGCAGACTACAAATGGGTGGACGCCAATGAAAAGAAACGACGAATGAAGGCGAAGAAAGCCAAAAGTAAGAAACATAAGAAGCCGCCAGTGGCTAAATCTGGAGATGGAGTGCATCGCAGCACCGAGGACATAGAAGAATAG

Protein sequence

>MS.gene22897.t1

MVGNWKAKVYDMLNVMVSVKSRRVPGAMTDEELFAVEDGESMINGENNDEYDDVLTAEERMQLDSALRMGNSDAACEDEEHGVDGQENGSSASNENFEANGVVKEKKSWFGWNKKSLKSNSDDPPEDLKTSKKTSRFGPEGSNQRLADQKIASEFLKDDSGDTKKGKDKNIKKKKKKGAVSETKTESEYKKGLRPVLWLTPDFPLKTDELLPLLDILANKVKAIRRLRELLTTKLPQGTFPVKVAIPIVPTIRVLVTFTKFEELQPIEEFSTPLSSPAHFQDAKSKESEGSASWISWMKGGRGGQSSDSDSHRYKDEADPFSIPADYKWVDANEKKRRMKAKKAKSKKHKKPPVAKSGDGVHRSTEDIEE