Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23902.t1 | XP_013457265.1 | 98.9 | 566 | 6 | 0 | 11 | 576 | 59 | 624 | 0.00E+00 | 1112.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23902.t1 | Q9SL48 | 77.4 | 562 | 122 | 3 | 11 | 568 | 55 | 615 | 1.6e-252 | 873.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23902.t1 | G7ZYG6 | 98.9 | 566 | 6 | 0 | 11 | 576 | 59 | 624 | 0.0e+00 | 1112.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene23902 | 0.848041 | 7.89E-60 | -1.69E-46 |
| MS.gene04918 | MS.gene23902 | 0.815836 | 7.54E-52 | -1.69E-46 |
| MS.gene04920 | MS.gene23902 | 0.801245 | 9.86E-49 | -1.69E-46 |
| MS.gene049227 | MS.gene23902 | 0.824827 | 6.54E-54 | -1.69E-46 |
| MS.gene049350 | MS.gene23902 | 0.822832 | 1.92E-53 | -1.69E-46 |
| MS.gene049499 | MS.gene23902 | 0.803049 | 4.20E-49 | -1.69E-46 |
| MS.gene049711 | MS.gene23902 | 0.807273 | 5.48E-50 | -1.69E-46 |
| MS.gene049807 | MS.gene23902 | 0.852146 | 5.59E-61 | -1.69E-46 |
| MS.gene050257 | MS.gene23902 | 0.804083 | 2.56E-49 | -1.69E-46 |
| MS.gene050258 | MS.gene23902 | 0.826652 | 2.41E-54 | -1.69E-46 |
| MS.gene050414 | MS.gene23902 | 0.821424 | 4.07E-53 | -1.69E-46 |
| MS.gene050551 | MS.gene23902 | 0.842756 | 2.13E-58 | -1.69E-46 |
| MS.gene050646 | MS.gene23902 | 0.846526 | 2.05E-59 | -1.69E-46 |
| MS.gene050654 | MS.gene23902 | 0.801294 | 9.64E-49 | -1.69E-46 |
| MS.gene050689 | MS.gene23902 | 0.81154 | 6.65E-51 | -1.69E-46 |
| MS.gene050838 | MS.gene23902 | 0.801404 | 9.15E-49 | -1.69E-46 |
| MS.gene051003 | MS.gene23902 | 0.842992 | 1.84E-58 | -1.69E-46 |
| MS.gene051029 | MS.gene23902 | 0.831869 | 1.31E-55 | -1.69E-46 |
| MS.gene051234 | MS.gene23902 | 0.859533 | 3.87E-63 | -1.69E-46 |
| MS.gene051343 | MS.gene23902 | 0.826463 | 2.68E-54 | -1.69E-46 |
| MS.gene051381 | MS.gene23902 | 0.821354 | 4.22E-53 | -1.69E-46 |
| MS.gene051744 | MS.gene23902 | 0.80503 | 1.63E-49 | -1.69E-46 |
| MS.gene052016 | MS.gene23902 | 0.803634 | 3.17E-49 | -1.69E-46 |
| MS.gene052155 | MS.gene23902 | -0.804934 | 1.70E-49 | -1.69E-46 |
| MS.gene052168 | MS.gene23902 | 0.816349 | 5.79E-52 | -1.69E-46 |
| MS.gene052307 | MS.gene23902 | 0.857935 | 1.16E-62 | -1.69E-46 |
| MS.gene052335 | MS.gene23902 | 0.823409 | 1.41E-53 | -1.69E-46 |
| MS.gene052463 | MS.gene23902 | 0.835229 | 1.89E-56 | -1.69E-46 |
| MS.gene052514 | MS.gene23902 | 0.853436 | 2.39E-61 | -1.69E-46 |
| MS.gene052516 | MS.gene23902 | 0.834039 | 3.77E-56 | -1.69E-46 |
| MS.gene052518 | MS.gene23902 | 0.802646 | 5.08E-49 | -1.69E-46 |
| MS.gene052609 | MS.gene23902 | 0.855712 | 5.25E-62 | -1.69E-46 |
| MS.gene052776 | MS.gene23902 | 0.800008 | 1.76E-48 | -1.69E-46 |
| MS.gene053122 | MS.gene23902 | 0.803333 | 3.66E-49 | -1.69E-46 |
| MS.gene053143 | MS.gene23902 | 0.881068 | 3.26E-70 | -1.69E-46 |
| MS.gene053144 | MS.gene23902 | 0.822603 | 2.17E-53 | -1.69E-46 |
| MS.gene053272 | MS.gene23902 | -0.80339 | 3.57E-49 | -1.69E-46 |
| MS.gene054004 | MS.gene23902 | 0.826225 | 3.05E-54 | -1.69E-46 |
| MS.gene054142 | MS.gene23902 | 0.808296 | 3.32E-50 | -1.69E-46 |
| MS.gene054178 | MS.gene23902 | 0.818413 | 1.99E-52 | -1.69E-46 |
| MS.gene054584 | MS.gene23902 | 0.80816 | 3.55E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene23902 | 0.808445 | 3.09E-50 | -1.69E-46 |
| MS.gene054709 | MS.gene23902 | 0.811138 | 8.13E-51 | -1.69E-46 |
| MS.gene055469 | MS.gene23902 | 0.811399 | 7.14E-51 | -1.69E-46 |
| MS.gene055513 | MS.gene23902 | 0.867898 | 9.74E-66 | -1.69E-46 |
| MS.gene056174 | MS.gene23902 | 0.817265 | 3.61E-52 | -1.69E-46 |
| MS.gene056308 | MS.gene23902 | 0.855778 | 5.02E-62 | -1.69E-46 |
| MS.gene056507 | MS.gene23902 | 0.82556 | 4.39E-54 | -1.69E-46 |
| MS.gene056519 | MS.gene23902 | 0.811996 | 5.29E-51 | -1.69E-46 |
| MS.gene056578 | MS.gene23902 | 0.826828 | 2.19E-54 | -1.69E-46 |
| MS.gene056677 | MS.gene23902 | 0.815316 | 9.84E-52 | -1.69E-46 |
| MS.gene056699 | MS.gene23902 | 0.834373 | 3.11E-56 | -1.69E-46 |
| MS.gene057034 | MS.gene23902 | 0.815556 | 8.70E-52 | -1.69E-46 |
| MS.gene057102 | MS.gene23902 | 0.82221 | 2.68E-53 | -1.69E-46 |
| MS.gene057132 | MS.gene23902 | 0.802131 | 6.49E-49 | -1.69E-46 |
| MS.gene057294 | MS.gene23902 | 0.800018 | 1.75E-48 | -1.69E-46 |
| MS.gene057371 | MS.gene23902 | 0.803185 | 3.93E-49 | -1.69E-46 |
| MS.gene058010 | MS.gene23902 | 0.805356 | 1.39E-49 | -1.69E-46 |
| MS.gene058649 | MS.gene23902 | 0.81019 | 1.30E-50 | -1.69E-46 |
| MS.gene058781 | MS.gene23902 | 0.817692 | 2.89E-52 | -1.69E-46 |
| MS.gene058783 | MS.gene23902 | 0.815752 | 7.87E-52 | -1.69E-46 |
| MS.gene059146 | MS.gene23902 | 0.806547 | 7.80E-50 | -1.69E-46 |
| MS.gene059170 | MS.gene23902 | 0.815135 | 1.08E-51 | -1.69E-46 |
| MS.gene059439 | MS.gene23902 | 0.802087 | 6.63E-49 | -1.69E-46 |
| MS.gene059778 | MS.gene23902 | 0.848719 | 5.12E-60 | -1.69E-46 |
| MS.gene060932 | MS.gene23902 | 0.827293 | 1.69E-54 | -1.69E-46 |
| MS.gene060933 | MS.gene23902 | 0.800516 | 1.39E-48 | -1.69E-46 |
| MS.gene060937 | MS.gene23902 | 0.805144 | 1.54E-49 | -1.69E-46 |
| MS.gene061006 | MS.gene23902 | 0.830382 | 3.03E-55 | -1.69E-46 |
| MS.gene061100 | MS.gene23902 | 0.896484 | 3.53E-76 | -1.69E-46 |
| MS.gene061160 | MS.gene23902 | 0.826401 | 2.77E-54 | -1.69E-46 |
| MS.gene061188 | MS.gene23902 | 0.836676 | 8.14E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene23902 | MS.gene072972 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23902.t1 | MTR_4g094405 | 98.940 | 566 | 6 | 0 | 11 | 576 | 59 | 624 | 0.0 | 1166 |
| MS.gene23902.t1 | MTR_3g090170 | 23.660 | 541 | 337 | 21 | 9 | 528 | 40 | 525 | 1.03e-20 | 96.3 |
| MS.gene23902.t1 | MTR_3g090170 | 24.938 | 405 | 253 | 14 | 9 | 395 | 40 | 411 | 2.49e-18 | 88.2 |
| MS.gene23902.t1 | MTR_4g023610 | 23.301 | 412 | 269 | 15 | 8 | 396 | 62 | 449 | 1.87e-17 | 86.3 |
| MS.gene23902.t1 | MTR_8g052140 | 93.103 | 29 | 2 | 0 | 11 | 39 | 45 | 73 | 3.63e-12 | 62.8 |
| MS.gene23902.t1 | MTR_5g011790 | 20.812 | 394 | 275 | 13 | 8 | 382 | 63 | 438 | 4.15e-12 | 69.3 |
| MS.gene23902.t1 | MTR_5g011790 | 20.812 | 394 | 275 | 13 | 8 | 382 | 14 | 389 | 4.83e-12 | 69.3 |
| MS.gene23902.t1 | MTR_5g011790 | 20.812 | 394 | 275 | 13 | 8 | 382 | 63 | 438 | 5.19e-12 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23902.t1 | AT2G17980 | 77.402 | 562 | 122 | 3 | 11 | 568 | 55 | 615 | 0.0 | 912 |
| MS.gene23902.t1 | AT4G31740 | 64.948 | 194 | 44 | 2 | 374 | 567 | 1 | 170 | 1.15e-76 | 240 |
| MS.gene23902.t1 | AT4G36100 | 65.185 | 135 | 40 | 3 | 339 | 472 | 107 | 235 | 6.63e-45 | 159 |
| MS.gene23902.t1 | AT1G77140 | 21.617 | 569 | 374 | 20 | 9 | 558 | 40 | 555 | 7.98e-19 | 90.5 |
| MS.gene23902.t1 | AT4G12120 | 23.958 | 384 | 245 | 14 | 8 | 367 | 61 | 421 | 8.95e-17 | 84.3 |
Find 148 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAACAATTGCTTCCTTAAA+TGG | 0.132005 | 4.2:-18260237 | None:intergenic |
| CCATTTAAAAGGTCCATTTA+AGG | 0.245268 | 4.2:+18260224 | MS.gene23902:CDS |
| GAGAATGACATGATGGTTAG+AGG | 0.262303 | 4.2:+18259760 | MS.gene23902:CDS |
| TGGATAGTGCTGATTCGTTT+TGG | 0.273156 | 4.2:+18259452 | MS.gene23902:CDS |
| AATCACGGTGCGGAGTTTAA+TGG | 0.300814 | 4.2:+18259580 | MS.gene23902:CDS |
| CCTCCCAAGCATATTATATA+TGG | 0.307162 | 4.2:+18260324 | MS.gene23902:CDS |
| ATGCTTGAAGATCTTGCTTC+GGG | 0.309638 | 4.2:+18258932 | MS.gene23902:CDS |
| GCAAGTGGCAACCATTTAAA+AGG | 0.326987 | 4.2:+18260213 | MS.gene23902:CDS |
| TTGCGATTCAGCATGACTTT+AGG | 0.340194 | 4.2:+18259341 | MS.gene23902:CDS |
| TTGGTGTTGTGCCGGTTATT+AGG | 0.342813 | 4.2:+18259155 | MS.gene23902:CDS |
| GTAGAGCAGCTTACGTTGTT+GGG | 0.345957 | 4.2:+18260378 | MS.gene23902:CDS |
| ATTGTTGAGAGGATTGTTAA+TGG | 0.346750 | 4.2:+18259109 | MS.gene23902:CDS |
| TTGGGGAAGAAGATGGGTTT+GGG | 0.355383 | 4.2:+18260396 | MS.gene23902:CDS |
| TACATATCTGTCTCAGGATT+TGG | 0.363551 | 4.2:-18260150 | None:intergenic |
| CGTTGAACATTGGATTGAAT+TGG | 0.365758 | 4.2:-18258836 | None:intergenic |
| AATAATTTGTTTACTGAAGG+TGG | 0.367485 | 4.2:+18259253 | MS.gene23902:CDS |
| GATCCCCGTGCTCCTAAGTC+TGG | 0.372753 | 4.2:+18260183 | MS.gene23902:CDS |
| GATGCTTGAAGATCTTGCTT+CGG | 0.373839 | 4.2:+18258931 | MS.gene23902:CDS |
| TAGGTGTCCGCGTGGTGGGC+CGG | 0.402954 | 4.2:+18259174 | MS.gene23902:CDS |
| ATCACGGTGCGGAGTTTAAT+GGG | 0.408447 | 4.2:+18259581 | MS.gene23902:CDS |
| GTTGGGGAAGAAGATGGGTT+TGG | 0.412638 | 4.2:+18260395 | MS.gene23902:CDS |
| AACATTGCTACTGTGTTGTT+GGG | 0.414573 | 4.2:+18259697 | MS.gene23902:CDS |
| GACTGGGCCGAGAAGCTCTA+TGG | 0.415523 | 4.2:+18260027 | MS.gene23902:CDS |
| TAACATTGCTACTGTGTTGT+TGG | 0.421174 | 4.2:+18259696 | MS.gene23902:CDS |
| TGCTTCGGGGACCATAGCTT+CGG | 0.422216 | 4.2:+18258946 | MS.gene23902:CDS |
| TTGTTGAGAGGATTGTTAAT+GGG | 0.426907 | 4.2:+18259110 | MS.gene23902:CDS |
| CGTGCTCCTAAGTCTGGTTC+AGG | 0.428583 | 4.2:+18260189 | MS.gene23902:CDS |
| GCGTGGTGGGCCGGCTGAGA+TGG | 0.429236 | 4.2:+18259183 | MS.gene23902:CDS |
| TTGAATAGGTTGAGTGTTCA+AGG | 0.432954 | 4.2:+18259400 | MS.gene23902:CDS |
| CGTTGGTTCATGATGTGCTT+GGG | 0.434927 | 4.2:+18259371 | MS.gene23902:CDS |
| AAACCGAAGCTTATCCATCT+TGG | 0.435098 | 4.2:-18259830 | None:intergenic |
| ATTTGGTCTCCCTTCAATCA+AGG | 0.437182 | 4.2:-18260133 | None:intergenic |
| CTGTTGAAGCCTTGATTGAA+GGG | 0.444683 | 4.2:+18260124 | MS.gene23902:CDS |
| TGACTGTCCATAGAGCTTCT+CGG | 0.445565 | 4.2:-18260034 | None:intergenic |
| TTTAATGGGACGGATTTGAT+TGG | 0.448477 | 4.2:+18259595 | MS.gene23902:CDS |
| TGTAGAGCAGCTTACGTTGT+TGG | 0.448636 | 4.2:+18260377 | MS.gene23902:CDS |
| ACTGTTGAAGCCTTGATTGA+AGG | 0.449353 | 4.2:+18260123 | MS.gene23902:CDS |
| CCGCGTTGGATCAAAGGATA+AGG | 0.449526 | 4.2:+18259212 | MS.gene23902:CDS |
| TTGAGTGTTCAAGGGGAGAA+AGG | 0.451443 | 4.2:+18259409 | MS.gene23902:CDS |
| TACGTTGTTGGGGAAGAAGA+TGG | 0.452960 | 4.2:+18260389 | MS.gene23902:CDS |
| CCACGCGGACACCTAATAAC+CGG | 0.453146 | 4.2:-18259166 | None:intergenic |
| TGTTAGTTCGTTTCAGAGGC+CGG | 0.458725 | 4.2:+18259282 | MS.gene23902:CDS |
| TGCTTGGGTTGAAGTTGAAT+AGG | 0.461236 | 4.2:+18259386 | MS.gene23902:CDS |
| GCAGAAGTAATATTGTTGAC+TGG | 0.470359 | 4.2:+18260010 | MS.gene23902:CDS |
| ATAATTTGTTTACTGAAGGT+GGG | 0.472080 | 4.2:+18259254 | MS.gene23902:CDS |
| AATCTTCGTCAGAAACAAAC+AGG | 0.472595 | 4.2:+18258508 | MS.gene23902:CDS |
| AAGAATAATTTGTTTACTGA+AGG | 0.473242 | 4.2:+18259250 | MS.gene23902:CDS |
| TCAATCTCCACCGCAACCTC+AGG | 0.475104 | 4.2:-18259499 | None:intergenic |
| TGCGATGATTCGTTGAACAT+TGG | 0.478197 | 4.2:-18258846 | None:intergenic |
| CGTTCCATATATAATATGCT+TGG | 0.482424 | 4.2:-18260328 | None:intergenic |
| CAACAATCTCCTCAATTTCA+CGG | 0.487353 | 4.2:-18259093 | None:intergenic |
| TTCAGCATGACTTTAGGTAT+AGG | 0.487647 | 4.2:+18259347 | MS.gene23902:CDS |
| TAAGTCTCTGAATGTTTCGT+TGG | 0.487831 | 4.2:+18259969 | MS.gene23902:CDS |
| TTATTAGGTGTCCGCGTGGT+GGG | 0.489264 | 4.2:+18259170 | MS.gene23902:CDS |
| AACTTCTCGGTGTGCTGAGA+GGG | 0.491058 | 4.2:+18259800 | MS.gene23902:CDS |
| GAACCAAGATGGATAAGCTT+CGG | 0.493462 | 4.2:+18259827 | MS.gene23902:CDS |
| CCGTTGGTTCATGATGTGCT+TGG | 0.493871 | 4.2:+18259370 | MS.gene23902:CDS |
| AAGTCATGCTGAATCGCAAC+CGG | 0.494196 | 4.2:-18259337 | None:intergenic |
| GTTCCATATATAATATGCTT+GGG | 0.496796 | 4.2:-18260327 | None:intergenic |
| AATCTTAATGATCCGTCTGC+TGG | 0.498721 | 4.2:+18259067 | MS.gene23902:CDS |
| TGCTTCCTCTCAGTCAGCTC+AGG | 0.499034 | 4.2:-18259655 | None:intergenic |
| AAGATGGGTTTGGGTAATGC+TGG | 0.500440 | 4.2:+18260405 | MS.gene23902:CDS |
| ACGGCGGGAACATCGTGAAC+GGG | 0.500575 | 4.2:-18258800 | None:intergenic |
| TGAAGTGGAGGCTGTGGAAA+CGG | 0.501310 | 4.2:+18259894 | MS.gene23902:CDS |
| GTTGGAGTTTCCTGAGGTTG+CGG | 0.502834 | 4.2:+18259489 | MS.gene23902:CDS |
| GCGAGGTACATATCTGTCTC+AGG | 0.503900 | 4.2:-18260156 | None:intergenic |
| CGCGTTGGATCAAAGGATAA+GGG | 0.503982 | 4.2:+18259213 | MS.gene23902:CDS |
| TGGCTACCGCGTTGGATCAA+AGG | 0.505080 | 4.2:+18259206 | MS.gene23902:CDS |
| CTCGGTGTGCTGAGAGGGAA+GGG | 0.508637 | 4.2:+18259805 | MS.gene23902:CDS |
| ATTGAAAGGAGTGAACTTCT+CGG | 0.509013 | 4.2:+18259787 | MS.gene23902:CDS |
| AATTGGTTGAACGAAATAAA+CGG | 0.509297 | 4.2:-18258819 | None:intergenic |
| TCCACAGCCTCCACTTCAGT+CGG | 0.509720 | 4.2:-18259889 | None:intergenic |
| CTTGCTCCTGAACCAGACTT+AGG | 0.509749 | 4.2:-18260195 | None:intergenic |
| CAGAAGTAATATTGTTGACT+GGG | 0.512458 | 4.2:+18260011 | MS.gene23902:CDS |
| GTGTTCAAGGGGAGAAAGGT+GGG | 0.520944 | 4.2:+18259413 | MS.gene23902:CDS |
| TTCGATTCAGCGAATTTCAA+AGG | 0.521180 | 4.2:+18258970 | MS.gene23902:CDS |
| TCCGACTGAAGTGGAGGCTG+TGG | 0.522299 | 4.2:+18259888 | MS.gene23902:CDS |
| TTGGGTTGCAAATGGTGGGT+TGG | 0.524353 | 4.2:+18259471 | MS.gene23902:CDS |
| AGTGTTCAAGGGGAGAAAGG+TGG | 0.524971 | 4.2:+18259412 | MS.gene23902:CDS |
| ACGTTGTTGGGGAAGAAGAT+GGG | 0.529725 | 4.2:+18260390 | MS.gene23902:CDS |
| CATCATGTATCTGATTTCAT+CGG | 0.529783 | 4.2:+18259855 | MS.gene23902:CDS |
| TGAATAGGTTGAGTGTTCAA+GGG | 0.531169 | 4.2:+18259401 | MS.gene23902:CDS |
| CACATCTGAACTACTGAGGT+GGG | 0.531717 | 4.2:-18260434 | None:intergenic |
| GAGAGGGAAGGGAACCAAGA+TGG | 0.533226 | 4.2:+18259816 | MS.gene23902:CDS |
| TGGTTAGAGGGAGTATTGAA+AGG | 0.535987 | 4.2:+18259773 | MS.gene23902:CDS |
| TAGTGACAGACAGCTAGCTT+TGG | 0.538193 | 4.2:+18260095 | MS.gene23902:CDS |
| TGACTTTAGGTATAGGCCGT+TGG | 0.538298 | 4.2:+18259354 | MS.gene23902:CDS |
| TCTTGAGTTTGTTACACTTG+AGG | 0.539068 | 4.2:+18259006 | MS.gene23902:CDS |
| TGGGATGAGATCTTATGAGT+TGG | 0.539391 | 4.2:+18259432 | MS.gene23902:CDS |
| CTGACGAAGATTGAGAGACA+TGG | 0.539905 | 4.2:-18258497 | None:intergenic |
| GCTTGATTCATATGCTAAGA+AGG | 0.541789 | 4.2:+18259738 | MS.gene23902:CDS |
| AGAATGACATGATGGTTAGA+GGG | 0.546127 | 4.2:+18259761 | MS.gene23902:CDS |
| CGATGAAATCAGATACATGA+TGG | 0.547327 | 4.2:-18259854 | None:intergenic |
| TGTGTTGTTGGGTGAGATCA+AGG | 0.549244 | 4.2:+18259708 | MS.gene23902:CDS |
| TGAACCAGACTTAGGAGCAC+GGG | 0.551638 | 4.2:-18260187 | None:intergenic |
| CTGAATCGAATCCGAAGCTA+TGG | 0.553466 | 4.2:-18258957 | None:intergenic |
| GTTATTAGGTGTCCGCGTGG+TGG | 0.559238 | 4.2:+18259169 | MS.gene23902:CDS |
| AACTATTAATCCGACTGAAG+TGG | 0.560642 | 4.2:+18259879 | MS.gene23902:CDS |
| TCTCGGTGTGCTGAGAGGGA+AGG | 0.564630 | 4.2:+18259804 | MS.gene23902:CDS |
| GCGGTAGCCACCATCTCAGC+CGG | 0.573670 | 4.2:-18259193 | None:intergenic |
| GATGAGGTCAATAAGAGGAC+TGG | 0.574212 | 4.2:+18259553 | MS.gene23902:CDS |
| GGCGACGCTTGGTGTTGTGC+CGG | 0.575523 | 4.2:+18259147 | MS.gene23902:CDS |
| GAATAGGTTGAGTGTTCAAG+GGG | 0.576422 | 4.2:+18259402 | MS.gene23902:CDS |
| TGCTGGTGACCGTGAAATTG+AGG | 0.576895 | 4.2:+18259084 | MS.gene23902:CDS |
| AACGGCGGGAACATCGTGAA+CGG | 0.577620 | 4.2:-18258801 | None:intergenic |
| GTTTGCGATCTTTGTCAATG+AGG | 0.578315 | 4.2:-18258778 | None:intergenic |
| AAGAGGACTGGAGGGAATCA+CGG | 0.579431 | 4.2:+18259565 | MS.gene23902:CDS |
| TGGTGGGCCGGCTGAGATGG+TGG | 0.580027 | 4.2:+18259186 | MS.gene23902:CDS |
| ATGTTGATGAGGTCAATAAG+AGG | 0.580113 | 4.2:+18259548 | MS.gene23902:CDS |
| TGAGATGGTGGCTACCGCGT+TGG | 0.586343 | 4.2:+18259198 | MS.gene23902:CDS |
| TCACATCTGAACTACTGAGG+TGG | 0.588791 | 4.2:-18260435 | None:intergenic |
| GAAGCAAGATCTTCAAGCAT+CGG | 0.589526 | 4.2:-18258929 | None:intergenic |
| TCGATGTTGAGAAATTGAGA+TGG | 0.590144 | 4.2:-18258898 | None:intergenic |
| CGGTGCGGAGTTTAATGGGA+CGG | 0.590356 | 4.2:+18259585 | MS.gene23902:CDS |
| GAGGTCAATAAGAGGACTGG+AGG | 0.591483 | 4.2:+18259556 | MS.gene23902:CDS |
| TAGAGCAGCTTACGTTGTTG+GGG | 0.594589 | 4.2:+18260379 | MS.gene23902:CDS |
| AGATCTTCAAGCATCGGACG+AGG | 0.598135 | 4.2:-18258923 | None:intergenic |
| TCAATAAGTGCAGTGACTGC+TGG | 0.598945 | 4.2:+18260054 | MS.gene23902:CDS |
| GGTTGAACGAAATAAACGGC+GGG | 0.599421 | 4.2:-18258815 | None:intergenic |
| TAAGAAGGAGAATGACATGA+TGG | 0.614444 | 4.2:+18259753 | MS.gene23902:CDS |
| TGGTGGGTTGGAGTTTCCTG+AGG | 0.614604 | 4.2:+18259483 | MS.gene23902:CDS |
| GGAGTTTCCTGAGGTTGCGG+TGG | 0.617381 | 4.2:+18259492 | MS.gene23902:CDS |
| TGCTTGAAGATCTTGCTTCG+GGG | 0.618864 | 4.2:+18258933 | MS.gene23902:CDS |
| AAATTGAGGAGATTGTTGAG+AGG | 0.621276 | 4.2:+18259098 | MS.gene23902:CDS |
| AAGTCTGGTTCAGGAGCAAG+TGG | 0.621847 | 4.2:+18260198 | MS.gene23902:CDS |
| TATTAATCCGACTGAAGTGG+AGG | 0.623131 | 4.2:+18259882 | MS.gene23902:CDS |
| GTATAAGAATGATGTTGATG+AGG | 0.625258 | 4.2:+18259537 | MS.gene23902:CDS |
| CCATATATAATATGCTTGGG+AGG | 0.626100 | 4.2:-18260324 | None:intergenic |
| GTCAAAGATCTTCGTAAACA+CGG | 0.631895 | 4.2:+18258740 | MS.gene23902:intron |
| CTGAACCAGACTTAGGAGCA+CGG | 0.640321 | 4.2:-18260188 | None:intergenic |
| ATTTCACGGTCACCAGCAGA+CGG | 0.640573 | 4.2:-18259079 | None:intergenic |
| AGGTCAATAAGAGGACTGGA+GGG | 0.644829 | 4.2:+18259557 | MS.gene23902:CDS |
| CCAAGCACATCATGAACCAA+CGG | 0.646610 | 4.2:-18259370 | None:intergenic |
| CACGAAGCATTTGATGAATG+CGG | 0.648032 | 4.2:+18259621 | MS.gene23902:CDS |
| ACATCTGAACTACTGAGGTG+GGG | 0.648073 | 4.2:-18260433 | None:intergenic |
| GAACTTCTCGGTGTGCTGAG+AGG | 0.648753 | 4.2:+18259799 | MS.gene23902:CDS |
| ACAGACAGCTAGCTTTGGCG+AGG | 0.674437 | 4.2:+18260100 | MS.gene23902:CDS |
| CGTTACCTGAGCTGACTGAG+AGG | 0.681656 | 4.2:+18259650 | MS.gene23902:CDS |
| CATTCACATCTGAACTACTG+AGG | 0.684802 | 4.2:-18260438 | None:intergenic |
| CCTTATCCTTTGATCCAACG+CGG | 0.700211 | 4.2:-18259212 | None:intergenic |
| ATCTCAGCCGGCCCACCACG+CGG | 0.700567 | 4.2:-18259181 | None:intergenic |
| GACTGGAGGGAATCACGGTG+CGG | 0.708144 | 4.2:+18259570 | MS.gene23902:CDS |
| GAGCACGGGGATCAAAAGCG+AGG | 0.710613 | 4.2:-18260173 | None:intergenic |
| AACGGCGCTGAGAGAGTGTG+AGG | 0.717344 | 4.2:+18259912 | MS.gene23902:CDS |
| GAACCAGACTTAGGAGCACG+GGG | 0.729204 | 4.2:-18260186 | None:intergenic |
| TGTTGGGTGAGATCAAGGAG+AGG | 0.746514 | 4.2:+18259713 | MS.gene23902:CDS |
| TGGTTGAACGAAATAAACGG+CGG | 0.753853 | 4.2:-18258816 | None:intergenic |
| CCGGTTATTAGGTGTCCGCG+TGG | 0.779586 | 4.2:+18259166 | MS.gene23902:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGAATAATTTGTTTACTGA+AGG | + | chr4.2:18259250-18259269 | MS.gene23902:CDS | 20.0% |
| ! | AAAACAATTGCTTCCTTAAA+TGG | - | chr4.2:18260240-18260259 | None:intergenic | 25.0% |
| ! | AATTGGTTGAACGAAATAAA+CGG | - | chr4.2:18258822-18258841 | None:intergenic | 25.0% |
| ! | AGATCTTTGACATGAATTAA+CGG | - | chr4.2:18258731-18258750 | None:intergenic | 25.0% |
| ! | GTTCCATATATAATATGCTT+GGG | - | chr4.2:18260330-18260349 | None:intergenic | 25.0% |
| !! | GCATTCTGAAAATTTGAAAA+TGG | - | chr4.2:18258591-18258610 | None:intergenic | 25.0% |
| !!! | AATAATTTGTTTACTGAAGG+TGG | + | chr4.2:18259253-18259272 | MS.gene23902:CDS | 25.0% |
| !!! | ATAATTTGTTTACTGAAGGT+GGG | + | chr4.2:18259254-18259273 | MS.gene23902:CDS | 25.0% |
| !!! | TGAGGATAATTTGTTTTCAT+TGG | + | chr4.2:18259024-18259043 | MS.gene23902:CDS | 25.0% |
| AGAGATTGAAAGTAGAATTG+AGG | - | chr4.2:18258551-18258570 | None:intergenic | 30.0% | |
| ATTGTTGAGAGGATTGTTAA+TGG | + | chr4.2:18259109-18259128 | MS.gene23902:CDS | 30.0% | |
| CATCATGTATCTGATTTCAT+CGG | + | chr4.2:18259855-18259874 | MS.gene23902:CDS | 30.0% | |
| CCATTTAAAAGGTCCATTTA+AGG | + | chr4.2:18260224-18260243 | MS.gene23902:CDS | 30.0% | |
| CGTTCCATATATAATATGCT+TGG | - | chr4.2:18260331-18260350 | None:intergenic | 30.0% | |
| CTATCAAAAACACACAAAAC+CGG | - | chr4.2:18259304-18259323 | None:intergenic | 30.0% | |
| GAGATTGAAAGTAGAATTGA+GGG | - | chr4.2:18258550-18258569 | None:intergenic | 30.0% | |
| GTATAAGAATGATGTTGATG+AGG | + | chr4.2:18259537-18259556 | MS.gene23902:CDS | 30.0% | |
| TTGTTGAGAGGATTGTTAAT+GGG | + | chr4.2:18259110-18259129 | MS.gene23902:CDS | 30.0% | |
| ! | ATTTTGTTAGTTCGTTTCAG+AGG | + | chr4.2:18259278-18259297 | MS.gene23902:CDS | 30.0% |
| ! | CAGAAGTAATATTGTTGACT+GGG | + | chr4.2:18260011-18260030 | MS.gene23902:CDS | 30.0% |
| ! | CCTTAAATGGACCTTTTAAA+TGG | - | chr4.2:18260227-18260246 | None:intergenic | 30.0% |
| ! | GAAGCAATTGTTTTCATGAT+TGG | + | chr4.2:18260246-18260265 | MS.gene23902:CDS | 30.0% |
| !!! | TAATGGGTTGTTTTGTGTTT+TGG | + | chr4.2:18259126-18259145 | MS.gene23902:CDS | 30.0% |
| AAATTGAGGAGATTGTTGAG+AGG | + | chr4.2:18259098-18259117 | MS.gene23902:CDS | 35.0% | |
| AACCTAAACCAACCAATAAC+AGG | + | chr4.2:18258626-18258645 | MS.gene23902:intron | 35.0% | |
| AACTATTAATCCGACTGAAG+TGG | + | chr4.2:18259879-18259898 | MS.gene23902:CDS | 35.0% | |
| AATCTTCGTCAGAAACAAAC+AGG | + | chr4.2:18258508-18258527 | MS.gene23902:CDS | 35.0% | |
| AGAATGACATGATGGTTAGA+GGG | + | chr4.2:18259761-18259780 | MS.gene23902:CDS | 35.0% | |
| ATTGAAAGGAGTGAACTTCT+CGG | + | chr4.2:18259787-18259806 | MS.gene23902:CDS | 35.0% | |
| CAACAATCTCCTCAATTTCA+CGG | - | chr4.2:18259096-18259115 | None:intergenic | 35.0% | |
| CCATATATAATATGCTTGGG+AGG | - | chr4.2:18260327-18260346 | None:intergenic | 35.0% | |
| CCTCCCAAGCATATTATATA+TGG | + | chr4.2:18260324-18260343 | MS.gene23902:CDS | 35.0% | |
| CGATGAAATCAGATACATGA+TGG | - | chr4.2:18259857-18259876 | None:intergenic | 35.0% | |
| CGTTGAACATTGGATTGAAT+TGG | - | chr4.2:18258839-18258858 | None:intergenic | 35.0% | |
| GACAGAATTTGTCGTAGATA+AGG | - | chr4.2:18258694-18258713 | None:intergenic | 35.0% | |
| GCAGAAGTAATATTGTTGAC+TGG | + | chr4.2:18260010-18260029 | MS.gene23902:CDS | 35.0% | |
| GCTTGATTCATATGCTAAGA+AGG | + | chr4.2:18259738-18259757 | MS.gene23902:CDS | 35.0% | |
| GTCAAAGATCTTCGTAAACA+CGG | + | chr4.2:18258740-18258759 | MS.gene23902:intron | 35.0% | |
| TAACATTGCTACTGTGTTGT+TGG | + | chr4.2:18259696-18259715 | MS.gene23902:CDS | 35.0% | |
| TAAGAAGGAGAATGACATGA+TGG | + | chr4.2:18259753-18259772 | MS.gene23902:CDS | 35.0% | |
| TAAGTCTCTGAATGTTTCGT+TGG | + | chr4.2:18259969-18259988 | MS.gene23902:CDS | 35.0% | |
| TACATATCTGTCTCAGGATT+TGG | - | chr4.2:18260153-18260172 | None:intergenic | 35.0% | |
| TCGATGTTGAGAAATTGAGA+TGG | - | chr4.2:18258901-18258920 | None:intergenic | 35.0% | |
| TTCAGCATGACTTTAGGTAT+AGG | + | chr4.2:18259347-18259366 | MS.gene23902:CDS | 35.0% | |
| TTCGATTCAGCGAATTTCAA+AGG | + | chr4.2:18258970-18258989 | MS.gene23902:CDS | 35.0% | |
| ! | AACATTGCTACTGTGTTGTT+GGG | + | chr4.2:18259697-18259716 | MS.gene23902:CDS | 35.0% |
| ! | ATGTTGATGAGGTCAATAAG+AGG | + | chr4.2:18259548-18259567 | MS.gene23902:CDS | 35.0% |
| ! | ATTGTTTTCATGATTGGTGG+TGG | + | chr4.2:18260252-18260271 | MS.gene23902:CDS | 35.0% |
| ! | GCAATTGTTTTCATGATTGG+TGG | + | chr4.2:18260249-18260268 | MS.gene23902:CDS | 35.0% |
| ! | GTTGTTGTTGTTCCTGTTAT+TGG | - | chr4.2:18258641-18258660 | None:intergenic | 35.0% |
| ! | TGAATAGGTTGAGTGTTCAA+GGG | + | chr4.2:18259401-18259420 | MS.gene23902:CDS | 35.0% |
| ! | TTGAATAGGTTGAGTGTTCA+AGG | + | chr4.2:18259400-18259419 | MS.gene23902:CDS | 35.0% |
| ! | TTGTTGTTCCTGTTATTGGT+TGG | - | chr4.2:18258637-18258656 | None:intergenic | 35.0% |
| ! | TTTAATGGGACGGATTTGAT+TGG | + | chr4.2:18259595-18259614 | MS.gene23902:CDS | 35.0% |
| !! | CGGTTTTGTGTGTTTTTGAT+AGG | + | chr4.2:18259302-18259321 | MS.gene23902:CDS | 35.0% |
| !! | TCTTGAGTTTGTTACACTTG+AGG | + | chr4.2:18259006-18259025 | MS.gene23902:CDS | 35.0% |
| !! | TTCCTGTTATTGGTTGGTTT+AGG | - | chr4.2:18258631-18258650 | None:intergenic | 35.0% |
| AAACCGAAGCTTATCCATCT+TGG | - | chr4.2:18259833-18259852 | None:intergenic | 40.0% | |
| AATCTTAATGATCCGTCTGC+TGG | + | chr4.2:18259067-18259086 | MS.gene23902:CDS | 40.0% | |
| ACTGTTGAAGCCTTGATTGA+AGG | + | chr4.2:18260123-18260142 | MS.gene23902:CDS | 40.0% | |
| ATGCTTGAAGATCTTGCTTC+GGG | + | chr4.2:18258932-18258951 | MS.gene23902:CDS | 40.0% | |
| ATTTGGTCTCCCTTCAATCA+AGG | - | chr4.2:18260136-18260155 | None:intergenic | 40.0% | |
| CTGTTGAAGCCTTGATTGAA+GGG | + | chr4.2:18260124-18260143 | MS.gene23902:CDS | 40.0% | |
| GAACCAAGATGGATAAGCTT+CGG | + | chr4.2:18259827-18259846 | MS.gene23902:CDS | 40.0% | |
| GAAGCAAGATCTTCAAGCAT+CGG | - | chr4.2:18258932-18258951 | None:intergenic | 40.0% | |
| GAGAATGACATGATGGTTAG+AGG | + | chr4.2:18259760-18259779 | MS.gene23902:CDS | 40.0% | |
| GATGCTTGAAGATCTTGCTT+CGG | + | chr4.2:18258931-18258950 | MS.gene23902:CDS | 40.0% | |
| GCAAGTGGCAACCATTTAAA+AGG | + | chr4.2:18260213-18260232 | MS.gene23902:CDS | 40.0% | |
| GTTTGCGATCTTTGTCAATG+AGG | - | chr4.2:18258781-18258800 | None:intergenic | 40.0% | |
| TATTAATCCGACTGAAGTGG+AGG | + | chr4.2:18259882-18259901 | MS.gene23902:CDS | 40.0% | |
| TGCGATGATTCGTTGAACAT+TGG | - | chr4.2:18258849-18258868 | None:intergenic | 40.0% | |
| TGGGATGAGATCTTATGAGT+TGG | + | chr4.2:18259432-18259451 | MS.gene23902:CDS | 40.0% | |
| TGGTTGAACGAAATAAACGG+CGG | - | chr4.2:18258819-18258838 | None:intergenic | 40.0% | |
| TTGCGATTCAGCATGACTTT+AGG | + | chr4.2:18259341-18259360 | MS.gene23902:CDS | 40.0% | |
| ! | CACGAAGCATTTGATGAATG+CGG | + | chr4.2:18259621-18259640 | MS.gene23902:CDS | 40.0% |
| ! | GAATAGGTTGAGTGTTCAAG+GGG | + | chr4.2:18259402-18259421 | MS.gene23902:CDS | 40.0% |
| ! | TGATAGGAATTTTGAGCTGC+CGG | + | chr4.2:18259318-18259337 | MS.gene23902:CDS | 40.0% |
| !! | GACAGAACTTTTGACTGGAA+TGG | + | chr4.2:18260350-18260369 | MS.gene23902:CDS | 40.0% |
| !! | TGCTTGGGTTGAAGTTGAAT+AGG | + | chr4.2:18259386-18259405 | MS.gene23902:CDS | 40.0% |
| !! | TGGTTAGAGGGAGTATTGAA+AGG | + | chr4.2:18259773-18259792 | MS.gene23902:CDS | 40.0% |
| !!! | GATTCGTTTTGGGTTGCAAA+TGG | + | chr4.2:18259463-18259482 | MS.gene23902:CDS | 40.0% |
| !!! | GGATAGTGCTGATTCGTTTT+GGG | + | chr4.2:18259453-18259472 | MS.gene23902:CDS | 40.0% |
| !!! | TGGATAGTGCTGATTCGTTT+TGG | + | chr4.2:18259452-18259471 | MS.gene23902:CDS | 40.0% |
| AAGTCATGCTGAATCGCAAC+CGG | - | chr4.2:18259340-18259359 | None:intergenic | 45.0% | |
| AATCACGGTGCGGAGTTTAA+TGG | + | chr4.2:18259580-18259599 | MS.gene23902:CDS | 45.0% | |
| ACGTTGTTGGGGAAGAAGAT+GGG | + | chr4.2:18260390-18260409 | MS.gene23902:CDS | 45.0% | |
| AGGTCAATAAGAGGACTGGA+GGG | + | chr4.2:18259557-18259576 | MS.gene23902:CDS | 45.0% | |
| ATCACGGTGCGGAGTTTAAT+GGG | + | chr4.2:18259581-18259600 | MS.gene23902:CDS | 45.0% | |
| CCAAGCACATCATGAACCAA+CGG | - | chr4.2:18259373-18259392 | None:intergenic | 45.0% | |
| CCTTATCCTTTGATCCAACG+CGG | - | chr4.2:18259215-18259234 | None:intergenic | 45.0% | |
| CGCGTTGGATCAAAGGATAA+GGG | + | chr4.2:18259213-18259232 | MS.gene23902:CDS | 45.0% | |
| CTGAATCGAATCCGAAGCTA+TGG | - | chr4.2:18258960-18258979 | None:intergenic | 45.0% | |
| GATGAGGTCAATAAGAGGAC+TGG | + | chr4.2:18259553-18259572 | MS.gene23902:CDS | 45.0% | |
| GGTTGAACGAAATAAACGGC+GGG | - | chr4.2:18258818-18258837 | None:intergenic | 45.0% | |
| GTAGAGCAGCTTACGTTGTT+GGG | + | chr4.2:18260378-18260397 | MS.gene23902:CDS | 45.0% | |
| TACGTTGTTGGGGAAGAAGA+TGG | + | chr4.2:18260389-18260408 | MS.gene23902:CDS | 45.0% | |
| TAGAGCAGCTTACGTTGTTG+GGG | + | chr4.2:18260379-18260398 | MS.gene23902:CDS | 45.0% | |
| TCAATAAGTGCAGTGACTGC+TGG | + | chr4.2:18260054-18260073 | MS.gene23902:CDS | 45.0% | |
| TGACTGTCCATAGAGCTTCT+CGG | - | chr4.2:18260037-18260056 | None:intergenic | 45.0% | |
| TGACTTTAGGTATAGGCCGT+TGG | + | chr4.2:18259354-18259373 | MS.gene23902:CDS | 45.0% | |
| TGCTTGAAGATCTTGCTTCG+GGG | + | chr4.2:18258933-18258952 | MS.gene23902:CDS | 45.0% | |
| TGTAGAGCAGCTTACGTTGT+TGG | + | chr4.2:18260377-18260396 | MS.gene23902:CDS | 45.0% | |
| TGTTAGTTCGTTTCAGAGGC+CGG | + | chr4.2:18259282-18259301 | MS.gene23902:CDS | 45.0% | |
| TTGAGTGTTCAAGGGGAGAA+AGG | + | chr4.2:18259409-18259428 | MS.gene23902:CDS | 45.0% | |
| ! | AAGATGGGTTTGGGTAATGC+TGG | + | chr4.2:18260405-18260424 | MS.gene23902:CDS | 45.0% |
| ! | GGAACGACAGAACTTTTGAC+TGG | + | chr4.2:18260345-18260364 | MS.gene23902:CDS | 45.0% |
| ! | TAGTGACAGACAGCTAGCTT+TGG | + | chr4.2:18260095-18260114 | MS.gene23902:CDS | 45.0% |
| ! | TGTGTTGTTGGGTGAGATCA+AGG | + | chr4.2:18259708-18259727 | MS.gene23902:CDS | 45.0% |
| ! | TTGGGGAAGAAGATGGGTTT+GGG | + | chr4.2:18260396-18260415 | MS.gene23902:CDS | 45.0% |
| !! | CGTTGGTTCATGATGTGCTT+GGG | + | chr4.2:18259371-18259390 | MS.gene23902:CDS | 45.0% |
| !! | TTGGTGTTGTGCCGGTTATT+AGG | + | chr4.2:18259155-18259174 | MS.gene23902:CDS | 45.0% |
| !!! | CGTTTTGGGTTGCAAATGGT+GGG | + | chr4.2:18259467-18259486 | MS.gene23902:CDS | 45.0% |
| !!! | TCGTTTTGGGTTGCAAATGG+TGG | + | chr4.2:18259466-18259485 | MS.gene23902:CDS | 45.0% |
| !!! | TTTTGTGTTTTGGCGACGCT+TGG | + | chr4.2:18259136-18259155 | MS.gene23902:CDS | 45.0% |
| AAGAGGACTGGAGGGAATCA+CGG | + | chr4.2:18259565-18259584 | MS.gene23902:CDS | 50.0% | |
| AGTGTTCAAGGGGAGAAAGG+TGG | + | chr4.2:18259412-18259431 | MS.gene23902:CDS | 50.0% | |
| ATTTCACGGTCACCAGCAGA+CGG | - | chr4.2:18259082-18259101 | None:intergenic | 50.0% | |
| CCGCGTTGGATCAAAGGATA+AGG | + | chr4.2:18259212-18259231 | MS.gene23902:CDS | 50.0% | |
| CTGAACCAGACTTAGGAGCA+CGG | - | chr4.2:18260191-18260210 | None:intergenic | 50.0% | |
| CTTGCTCCTGAACCAGACTT+AGG | - | chr4.2:18260198-18260217 | None:intergenic | 50.0% | |
| GAGGTCAATAAGAGGACTGG+AGG | + | chr4.2:18259556-18259575 | MS.gene23902:CDS | 50.0% | |
| GCGAGGTACATATCTGTCTC+AGG | - | chr4.2:18260159-18260178 | None:intergenic | 50.0% | |
| GTGTTCAAGGGGAGAAAGGT+GGG | + | chr4.2:18259413-18259432 | MS.gene23902:CDS | 50.0% | |
| GTTGGAGTTTCCTGAGGTTG+CGG | + | chr4.2:18259489-18259508 | MS.gene23902:CDS | 50.0% | |
| TGAAGTGGAGGCTGTGGAAA+CGG | + | chr4.2:18259894-18259913 | MS.gene23902:CDS | 50.0% | |
| TGCTGGTGACCGTGAAATTG+AGG | + | chr4.2:18259084-18259103 | MS.gene23902:CDS | 50.0% | |
| TGTTGGGTGAGATCAAGGAG+AGG | + | chr4.2:18259713-18259732 | MS.gene23902:CDS | 50.0% | |
| TTATTAGGTGTCCGCGTGGT+GGG | + | chr4.2:18259170-18259189 | MS.gene23902:CDS | 50.0% | |
| ! | AACTTCTCGGTGTGCTGAGA+GGG | + | chr4.2:18259800-18259819 | MS.gene23902:CDS | 50.0% |
| ! | AAGTCTGGTTCAGGAGCAAG+TGG | + | chr4.2:18260198-18260217 | MS.gene23902:CDS | 50.0% |
| ! | GTTGGGGAAGAAGATGGGTT+TGG | + | chr4.2:18260395-18260414 | MS.gene23902:CDS | 50.0% |
| ! | TGAACCAGACTTAGGAGCAC+GGG | - | chr4.2:18260190-18260209 | None:intergenic | 50.0% |
| !! | AGATCTTCAAGCATCGGACG+AGG | - | chr4.2:18258926-18258945 | None:intergenic | 50.0% |
| !! | CCGTTGGTTCATGATGTGCT+TGG | + | chr4.2:18259370-18259389 | MS.gene23902:CDS | 50.0% |
| !! | TTGGGTTGCAAATGGTGGGT+TGG | + | chr4.2:18259471-18259490 | MS.gene23902:CDS | 50.0% |
| AACGGCGGGAACATCGTGAA+CGG | - | chr4.2:18258804-18258823 | None:intergenic | 55.0% | |
| CCACGCGGACACCTAATAAC+CGG | - | chr4.2:18259169-18259188 | None:intergenic | 55.0% | |
| CGGTGCGGAGTTTAATGGGA+CGG | + | chr4.2:18259585-18259604 | MS.gene23902:CDS | 55.0% | |
| CGTTACCTGAGCTGACTGAG+AGG | + | chr4.2:18259650-18259669 | MS.gene23902:CDS | 55.0% | |
| GAGAGGGAAGGGAACCAAGA+TGG | + | chr4.2:18259816-18259835 | MS.gene23902:CDS | 55.0% | |
| GTTATTAGGTGTCCGCGTGG+TGG | + | chr4.2:18259169-18259188 | MS.gene23902:CDS | 55.0% | |
| TCAATCTCCACCGCAACCTC+AGG | - | chr4.2:18259502-18259521 | None:intergenic | 55.0% | |
| TCCACAGCCTCCACTTCAGT+CGG | - | chr4.2:18259892-18259911 | None:intergenic | 55.0% | |
| TGCTTCCTCTCAGTCAGCTC+AGG | - | chr4.2:18259658-18259677 | None:intergenic | 55.0% | |
| TGCTTCGGGGACCATAGCTT+CGG | + | chr4.2:18258946-18258965 | MS.gene23902:CDS | 55.0% | |
| TGGCTACCGCGTTGGATCAA+AGG | + | chr4.2:18259206-18259225 | MS.gene23902:CDS | 55.0% | |
| ! | CGTGCTCCTAAGTCTGGTTC+AGG | + | chr4.2:18260189-18260208 | MS.gene23902:CDS | 55.0% |
| ! | GAACCAGACTTAGGAGCACG+GGG | - | chr4.2:18260189-18260208 | None:intergenic | 55.0% |
| ! | GAACTTCTCGGTGTGCTGAG+AGG | + | chr4.2:18259799-18259818 | MS.gene23902:CDS | 55.0% |
| !! | ACAGACAGCTAGCTTTGGCG+AGG | + | chr4.2:18260100-18260119 | MS.gene23902:CDS | 55.0% |
| !! | TGGTGGGTTGGAGTTTCCTG+AGG | + | chr4.2:18259483-18259502 | MS.gene23902:CDS | 55.0% |
| ACGGCGGGAACATCGTGAAC+GGG | - | chr4.2:18258803-18258822 | None:intergenic | 60.0% | |
| CCGGTTATTAGGTGTCCGCG+TGG | + | chr4.2:18259166-18259185 | MS.gene23902:CDS | 60.0% | |
| GACTGGAGGGAATCACGGTG+CGG | + | chr4.2:18259570-18259589 | MS.gene23902:CDS | 60.0% | |
| GACTGGGCCGAGAAGCTCTA+TGG | + | chr4.2:18260027-18260046 | MS.gene23902:CDS | 60.0% | |
| GAGCACGGGGATCAAAAGCG+AGG | - | chr4.2:18260176-18260195 | None:intergenic | 60.0% | |
| GATCCCCGTGCTCCTAAGTC+TGG | + | chr4.2:18260183-18260202 | MS.gene23902:CDS | 60.0% | |
| GGAGTTTCCTGAGGTTGCGG+TGG | + | chr4.2:18259492-18259511 | MS.gene23902:CDS | 60.0% | |
| TCCGACTGAAGTGGAGGCTG+TGG | + | chr4.2:18259888-18259907 | MS.gene23902:CDS | 60.0% | |
| ! | AACGGCGCTGAGAGAGTGTG+AGG | + | chr4.2:18259912-18259931 | MS.gene23902:CDS | 60.0% |
| ! | CTCGGTGTGCTGAGAGGGAA+GGG | + | chr4.2:18259805-18259824 | MS.gene23902:CDS | 60.0% |
| ! | TCTCGGTGTGCTGAGAGGGA+AGG | + | chr4.2:18259804-18259823 | MS.gene23902:CDS | 60.0% |
| ! | TGAGATGGTGGCTACCGCGT+TGG | + | chr4.2:18259198-18259217 | MS.gene23902:CDS | 60.0% |
| GCGGTAGCCACCATCTCAGC+CGG | - | chr4.2:18259196-18259215 | None:intergenic | 65.0% | |
| !! | GGCGACGCTTGGTGTTGTGC+CGG | + | chr4.2:18259147-18259166 | MS.gene23902:CDS | 65.0% |
| ATCTCAGCCGGCCCACCACG+CGG | - | chr4.2:18259184-18259203 | None:intergenic | 70.0% | |
| ! | TGGTGGGCCGGCTGAGATGG+TGG | + | chr4.2:18259186-18259205 | MS.gene23902:CDS | 70.0% |
| !! | TAGGTGTCCGCGTGGTGGGC+CGG | + | chr4.2:18259174-18259193 | MS.gene23902:CDS | 70.0% |
| !! | GCGTGGTGGGCCGGCTGAGA+TGG | + | chr4.2:18259183-18259202 | MS.gene23902:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 18258499 | 18260446 | 18258499 | ID=MS.gene23902 |
| chr4.2 | mRNA | 18258499 | 18260446 | 18258499 | ID=MS.gene23902.t1;Parent=MS.gene23902 |
| chr4.2 | exon | 18258499 | 18258529 | 18258499 | ID=MS.gene23902.t1.exon1;Parent=MS.gene23902.t1 |
| chr4.2 | CDS | 18258499 | 18258529 | 18258499 | ID=cds.MS.gene23902.t1;Parent=MS.gene23902.t1 |
| chr4.2 | exon | 18258747 | 18260446 | 18258747 | ID=MS.gene23902.t1.exon2;Parent=MS.gene23902.t1 |
| chr4.2 | CDS | 18258747 | 18260446 | 18258747 | ID=cds.MS.gene23902.t1;Parent=MS.gene23902.t1 |
| Gene Sequence |
| Protein sequence |
