Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25077.t1 | XP_003627378.2 | 99.1 | 219 | 2 | 0 | 1 | 219 | 12 | 230 | 1.60E-124 | 455.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25077.t1 | Q9LQI7 | 71.5 | 214 | 60 | 1 | 1 | 213 | 12 | 225 | 1.3e-93 | 344.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25077.t1 | G7L8D3 | 99.1 | 219 | 2 | 0 | 1 | 219 | 12 | 230 | 1.2e-124 | 455.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049756 | MS.gene25077 | 0.813528 | 2.45E-51 | -1.69E-46 |
| MS.gene050277 | MS.gene25077 | 0.848372 | 6.39E-60 | -1.69E-46 |
| MS.gene050721 | MS.gene25077 | 0.800361 | 1.49E-48 | -1.69E-46 |
| MS.gene051063 | MS.gene25077 | 0.866243 | 3.29E-65 | -1.69E-46 |
| MS.gene051245 | MS.gene25077 | 0.818779 | 1.64E-52 | -1.69E-46 |
| MS.gene051330 | MS.gene25077 | 0.81092 | 9.07E-51 | -1.69E-46 |
| MS.gene051349 | MS.gene25077 | 0.804454 | 2.14E-49 | -1.69E-46 |
| MS.gene051633 | MS.gene25077 | 0.834738 | 2.52E-56 | -1.69E-46 |
| MS.gene051687 | MS.gene25077 | 0.807528 | 4.84E-50 | -1.69E-46 |
| MS.gene051746 | MS.gene25077 | 0.828447 | 8.95E-55 | -1.69E-46 |
| MS.gene051748 | MS.gene25077 | 0.807953 | 3.93E-50 | -1.69E-46 |
| MS.gene051757 | MS.gene25077 | 0.807058 | 6.08E-50 | -1.69E-46 |
| MS.gene051903 | MS.gene25077 | 0.814299 | 1.65E-51 | -1.69E-46 |
| MS.gene052133 | MS.gene25077 | 0.800227 | 1.59E-48 | -1.69E-46 |
| MS.gene052256 | MS.gene25077 | 0.808946 | 2.41E-50 | -1.69E-46 |
| MS.gene052286 | MS.gene25077 | 0.829506 | 4.96E-55 | -1.69E-46 |
| MS.gene052302 | MS.gene25077 | 0.846052 | 2.77E-59 | -1.69E-46 |
| MS.gene052376 | MS.gene25077 | 0.84475 | 6.23E-59 | -1.69E-46 |
| MS.gene052856 | MS.gene25077 | 0.822986 | 1.77E-53 | -1.69E-46 |
| MS.gene052947 | MS.gene25077 | 0.821721 | 3.47E-53 | -1.69E-46 |
| MS.gene053132 | MS.gene25077 | 0.822277 | 2.58E-53 | -1.69E-46 |
| MS.gene053216 | MS.gene25077 | 0.806974 | 6.34E-50 | -1.69E-46 |
| MS.gene053437 | MS.gene25077 | 0.811986 | 5.32E-51 | -1.69E-46 |
| MS.gene055174 | MS.gene25077 | 0.800925 | 1.15E-48 | -1.69E-46 |
| MS.gene055591 | MS.gene25077 | -0.832611 | 8.57E-56 | -1.69E-46 |
| MS.gene056069 | MS.gene25077 | -0.8159 | 7.30E-52 | -1.69E-46 |
| MS.gene056432 | MS.gene25077 | 0.81866 | 1.75E-52 | -1.69E-46 |
| MS.gene056580 | MS.gene25077 | 0.812906 | 3.35E-51 | -1.69E-46 |
| MS.gene056631 | MS.gene25077 | 0.827792 | 1.29E-54 | -1.69E-46 |
| MS.gene056760 | MS.gene25077 | 0.821905 | 3.15E-53 | -1.69E-46 |
| MS.gene057057 | MS.gene25077 | 0.814478 | 1.51E-51 | -1.69E-46 |
| MS.gene057094 | MS.gene25077 | 0.820775 | 5.74E-53 | -1.69E-46 |
| MS.gene057140 | MS.gene25077 | 0.812605 | 3.90E-51 | -1.69E-46 |
| MS.gene057234 | MS.gene25077 | 0.846888 | 1.64E-59 | -1.69E-46 |
| MS.gene057260 | MS.gene25077 | 0.805761 | 1.14E-49 | -1.69E-46 |
| MS.gene05795 | MS.gene25077 | 0.802543 | 5.34E-49 | -1.69E-46 |
| MS.gene058055 | MS.gene25077 | 0.81779 | 2.75E-52 | -1.69E-46 |
| MS.gene058084 | MS.gene25077 | 0.804992 | 1.65E-49 | -1.69E-46 |
| MS.gene058182 | MS.gene25077 | 0.815943 | 7.14E-52 | -1.69E-46 |
| MS.gene058238 | MS.gene25077 | 0.813675 | 2.27E-51 | -1.69E-46 |
| MS.gene058798 | MS.gene25077 | 0.809069 | 2.27E-50 | -1.69E-46 |
| MS.gene058906 | MS.gene25077 | 0.880176 | 6.81E-70 | -1.69E-46 |
| MS.gene059165 | MS.gene25077 | 0.800598 | 1.34E-48 | -1.69E-46 |
| MS.gene059898 | MS.gene25077 | 0.817914 | 2.57E-52 | -1.69E-46 |
| MS.gene06001 | MS.gene25077 | 0.872765 | 2.47E-67 | -1.69E-46 |
| MS.gene060586 | MS.gene25077 | 0.803918 | 2.77E-49 | -1.69E-46 |
| MS.gene060619 | MS.gene25077 | 0.806518 | 7.91E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25077.t1 | MTR_8g022330 | 99.087 | 219 | 2 | 0 | 1 | 219 | 12 | 230 | 6.41e-163 | 449 |
| MS.gene25077.t1 | MTR_8g087310 | 30.198 | 202 | 109 | 7 | 21 | 211 | 135 | 315 | 3.58e-13 | 68.2 |
| MS.gene25077.t1 | MTR_8g087310 | 30.198 | 202 | 109 | 7 | 21 | 211 | 254 | 434 | 3.85e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25077.t1 | AT1G17350 | 71.495 | 214 | 60 | 1 | 1 | 213 | 12 | 225 | 9.52e-119 | 337 |
| MS.gene25077.t1 | AT1G17350 | 71.495 | 214 | 60 | 1 | 1 | 213 | 12 | 225 | 9.52e-119 | 337 |
| MS.gene25077.t1 | AT1G17350 | 71.495 | 214 | 60 | 1 | 1 | 213 | 12 | 225 | 9.52e-119 | 337 |
| MS.gene25077.t1 | AT1G17350 | 71.495 | 214 | 60 | 1 | 1 | 213 | 12 | 225 | 9.52e-119 | 337 |
| MS.gene25077.t1 | AT1G17350 | 69.340 | 212 | 56 | 2 | 1 | 203 | 12 | 223 | 8.77e-110 | 315 |
| MS.gene25077.t1 | AT1G72420 | 67.442 | 215 | 68 | 2 | 1 | 213 | 12 | 226 | 8.26e-109 | 312 |
| MS.gene25077.t1 | AT1G72420 | 67.442 | 215 | 68 | 2 | 1 | 213 | 12 | 226 | 8.26e-109 | 312 |
| MS.gene25077.t1 | AT1G72420 | 67.464 | 209 | 66 | 2 | 7 | 213 | 7 | 215 | 2.04e-105 | 303 |
| MS.gene25077.t1 | AT1G72420 | 63.115 | 122 | 44 | 1 | 1 | 121 | 12 | 133 | 5.75e-52 | 166 |
| MS.gene25077.t1 | AT1G72420 | 63.115 | 122 | 44 | 1 | 1 | 121 | 12 | 133 | 1.19e-51 | 164 |
| MS.gene25077.t1 | AT1G72420 | 63.115 | 122 | 44 | 1 | 1 | 121 | 12 | 133 | 1.19e-51 | 164 |
Find 46 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTATTCTGATTCTGAATT+TGG | 0.164131 | 8.4:+72107467 | MS.gene25077:CDS |
| TGCAATATACCAGTTATCTT+TGG | 0.216625 | 8.4:-72108761 | None:intergenic |
| ACGATAGCTATGAAACTTAA+AGG | 0.245721 | 8.4:+72108526 | MS.gene25077:CDS |
| CAGATACCTGAATCTGAAAA+TGG | 0.295053 | 8.4:+72107611 | MS.gene25077:CDS |
| TGCAGATATACACGGAGAAT+TGG | 0.328795 | 8.4:+72108683 | MS.gene25077:intron |
| TTGATTTCAACAGCTATATC+TGG | 0.331646 | 8.4:+72107365 | MS.gene25077:intron |
| CAAAACCTATACTACATCAT+TGG | 0.343817 | 8.4:-72111015 | None:intergenic |
| GCAATATACCAGTTATCTTT+GGG | 0.348274 | 8.4:-72108760 | None:intergenic |
| TTGTGGAATGCGCTCCAAAA+AGG | 0.350095 | 8.4:+72107715 | MS.gene25077:CDS |
| TTTACGTGCCCAAAGATAAC+TGG | 0.351126 | 8.4:+72108752 | MS.gene25077:CDS |
| CCAAGCAAGAATTATCAAAA+TGG | 0.360136 | 8.4:+72107441 | MS.gene25077:CDS |
| ATTTCAGACTTGAACTTGAA+TGG | 0.375010 | 8.4:+72110968 | MS.gene25077:CDS |
| GGTGTCCCAGGTGCTAGATC+TGG | 0.377828 | 8.4:+72110937 | MS.gene25077:CDS |
| ATGAATCCATCACGTGTTCT+TGG | 0.389127 | 8.4:+72110886 | MS.gene25077:CDS |
| CATTGGGTTCTCACTTCTCA+TGG | 0.392116 | 8.4:-72110998 | None:intergenic |
| TCTGAAAATGGTAAAACTAC+TGG | 0.430983 | 8.4:+72107623 | MS.gene25077:CDS |
| CTCTGGGAATCTTTCACTTG+AGG | 0.435126 | 8.4:+72107652 | MS.gene25077:CDS |
| TATTCTGATTCTGAATTTGG+AGG | 0.441704 | 8.4:+72107470 | MS.gene25077:CDS |
| AAAACCTATACTACATCATT+GGG | 0.453436 | 8.4:-72111014 | None:intergenic |
| AATGCCGAGGGTGGTGTCCC+AGG | 0.459127 | 8.4:+72110925 | MS.gene25077:CDS |
| GCAGATATACACGGAGAATT+GGG | 0.459883 | 8.4:+72108684 | MS.gene25077:intron |
| GTTTGATGGCTTCATTGACT+TGG | 0.463757 | 8.4:+72108492 | MS.gene25077:intron |
| CCTGGTCCAGATCTAGCACC+TGG | 0.491978 | 8.4:-72110943 | None:intergenic |
| TCAATGGATGCTACTAAGAA+AGG | 0.500994 | 8.4:+72107283 | None:intergenic |
| GCTATGAAACTTAAAGGAGA+TGG | 0.505648 | 8.4:+72108532 | MS.gene25077:CDS |
| GAGTTGTCCTCCATCTGTCC+AGG | 0.525035 | 8.4:-72108715 | None:intergenic |
| TAGCTCGATATGTACCTACT+TGG | 0.540332 | 8.4:+72110833 | MS.gene25077:CDS |
| CTTTCACTTGAGGTTACTCA+AGG | 0.540859 | 8.4:+72107662 | MS.gene25077:CDS |
| GGTTAACTCACCTGGACAGA+TGG | 0.543070 | 8.4:+72108705 | MS.gene25077:CDS |
| AAGTGGAATATTAGTAGAGG+TGG | 0.553563 | 8.4:+72107689 | MS.gene25077:CDS |
| GCTAAGTGGAATATTAGTAG+AGG | 0.567692 | 8.4:+72107686 | MS.gene25077:CDS |
| GACAGATGGAGGACAACTCA+TGG | 0.575304 | 8.4:+72108719 | MS.gene25077:CDS |
| AGCACCTGGGACACCACCCT+CGG | 0.576679 | 8.4:-72110929 | None:intergenic |
| CCAGGTGCTAGATCTGGACC+AGG | 0.581357 | 8.4:+72110943 | MS.gene25077:CDS |
| GAGAATTGGGTTAACTCACC+TGG | 0.591802 | 8.4:+72108697 | MS.gene25077:CDS |
| AGGTTACTCAAGGTGCTAAG+TGG | 0.593770 | 8.4:+72107672 | MS.gene25077:CDS |
| CGATATGTACCTACTTGGAG+AGG | 0.604855 | 8.4:+72110838 | MS.gene25077:CDS |
| GACATGCCAAGAACACGTGA+TGG | 0.606451 | 8.4:-72110892 | None:intergenic |
| GTAGGTACATATCGAGCTAG+AGG | 0.608047 | 8.4:-72110829 | None:intergenic |
| AGATAACTGGTATATTGCAA+AGG | 0.608700 | 8.4:+72108765 | MS.gene25077:CDS |
| ATAACATTCCCTCTCCAAGT+AGG | 0.627204 | 8.4:-72110847 | None:intergenic |
| AGTTCAAGTCTGAAATCACC+TGG | 0.640637 | 8.4:-72110961 | None:intergenic |
| TAACTCACCTGGACAGATGG+AGG | 0.644910 | 8.4:+72108708 | MS.gene25077:CDS |
| GATATGTACCTACTTGGAGA+GGG | 0.650673 | 8.4:+72110839 | MS.gene25077:CDS |
| GATTATGGTGCAGATATACA+CGG | 0.690928 | 8.4:+72108675 | MS.gene25077:intron |
| CTGGTCCAGATCTAGCACCT+GGG | 0.695025 | 8.4:-72110942 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTATCAATTTAATGAA+TGG | + | chr8.4:72109650-72109669 | MS.gene25077:intron | 10.0% |
| !!! | TTATTTTTTGATATAGAAAT+AGG | - | chr8.4:72107839-72107858 | None:intergenic | 10.0% |
| !! | TTTAAATAATCAATTCAAAC+AGG | + | chr8.4:72108000-72108019 | MS.gene25077:intron | 15.0% |
| !!! | AAGTTGAATATATATTTTTC+AGG | - | chr8.4:72107416-72107435 | None:intergenic | 15.0% |
| !!! | CAGAAAAAATATAGAATTTT+TGG | + | chr8.4:72109007-72109026 | MS.gene25077:intron | 15.0% |
| !!! | TTAAAAAACACTAACATTTT+AGG | - | chr8.4:72109815-72109834 | None:intergenic | 15.0% |
| !!! | TTGATTTTGAAGAAAAAAAA+GGG | + | chr8.4:72110523-72110542 | MS.gene25077:intron | 15.0% |
| !!! | TTTGATTTTGAAGAAAAAAA+AGG | + | chr8.4:72110522-72110541 | MS.gene25077:intron | 15.0% |
| !! | ACCAAATAATTTAAACTTTG+GGG | - | chr8.4:72109694-72109713 | None:intergenic | 20.0% |
| !! | ATAACAAGTACAAAATCAAT+GGG | - | chr8.4:72110211-72110230 | None:intergenic | 20.0% |
| !! | CACCAAATAATTTAAACTTT+GGG | - | chr8.4:72109695-72109714 | None:intergenic | 20.0% |
| !! | TATAACAAGTACAAAATCAA+TGG | - | chr8.4:72110212-72110231 | None:intergenic | 20.0% |
| !! | TCACCAAATAATTTAAACTT+TGG | - | chr8.4:72109696-72109715 | None:intergenic | 20.0% |
| !!! | ACTTTGGTTAATTTAATTTC+TGG | + | chr8.4:72107523-72107542 | MS.gene25077:intron | 20.0% |
| !!! | ATTTGGCATTTTAAAAGAAA+AGG | - | chr8.4:72108585-72108604 | None:intergenic | 20.0% |
| !!! | ATTTTGCATTCAGATAAAAA+AGG | - | chr8.4:72109186-72109205 | None:intergenic | 20.0% |
| !!! | CTTTGGTTAATTTAATTTCT+GGG | + | chr8.4:72107524-72107543 | MS.gene25077:intron | 20.0% |
| !!! | TATTTTTGTCTATTTTGTTC+TGG | + | chr8.4:72110304-72110323 | MS.gene25077:intron | 20.0% |
| !!! | TGATTTTGAAGAAAAAAAAG+GGG | + | chr8.4:72110524-72110543 | MS.gene25077:intron | 20.0% |
| !!! | TTAAATTATTTGGTGAAATC+AGG | + | chr8.4:72109700-72109719 | MS.gene25077:intron | 20.0% |
| !!! | TTGAATATATATTTTTCAGG+TGG | - | chr8.4:72107413-72107432 | None:intergenic | 20.0% |
| !!! | TTTTTATAATAAGTCACGTT+TGG | - | chr8.4:72109076-72109095 | None:intergenic | 20.0% |
| ! | AAATTTCCTAGGATATCATT+TGG | - | chr8.4:72108602-72108621 | None:intergenic | 25.0% |
| ! | AATGAGATAGTATACATTTG+TGG | - | chr8.4:72109435-72109454 | None:intergenic | 25.0% |
| ! | AATGCAACAAATGAATCATA+AGG | + | chr8.4:72109843-72109862 | MS.gene25077:intron | 25.0% |
| ! | AATTCAATTCAATATGCACT+AGG | - | chr8.4:72108395-72108414 | None:intergenic | 25.0% |
| ! | AGCTAATAAGTCAATTCAAA+CGG | + | chr8.4:72108342-72108361 | MS.gene25077:intron | 25.0% |
| ! | ATTCAGATAAAAAAGGAAAC+GGG | - | chr8.4:72109179-72109198 | None:intergenic | 25.0% |
| ! | ATTGAATTGAATTGTCTGAT+TGG | + | chr8.4:72108402-72108421 | MS.gene25077:intron | 25.0% |
| ! | CAAGATAACTTATAGCTTAT+AGG | - | chr8.4:72107881-72107900 | None:intergenic | 25.0% |
| ! | CATATCAATCATTACTAATC+AGG | - | chr8.4:72108821-72108840 | None:intergenic | 25.0% |
| ! | CATTCAGATAAAAAAGGAAA+CGG | - | chr8.4:72109180-72109199 | None:intergenic | 25.0% |
| ! | CTAAAAGAATAATTGTTGCT+TGG | + | chr8.4:72110641-72110660 | MS.gene25077:intron | 25.0% |
| ! | CTTTACAAACAAGTTCAAAT+TGG | - | chr8.4:72109935-72109954 | None:intergenic | 25.0% |
| ! | TAAGCTAAATTTAGCTACAA+CGG | + | chr8.4:72110124-72110143 | MS.gene25077:intron | 25.0% |
| ! | TATCAAAATCTGCTATGTTA+TGG | - | chr8.4:72108892-72108911 | None:intergenic | 25.0% |
| ! | TATCTATTGAGTAAACACTT+GGG | + | chr8.4:72110494-72110513 | MS.gene25077:intron | 25.0% |
| ! | TATTGTAACTAGTTGGATTA+TGG | + | chr8.4:72108660-72108679 | MS.gene25077:intron | 25.0% |
| ! | TCAAATTGTTAATGTTGTTC+AGG | + | chr8.4:72107569-72107588 | MS.gene25077:intron | 25.0% |
| ! | TCCCCAAAGTTTAAATTATT+TGG | + | chr8.4:72109690-72109709 | MS.gene25077:intron | 25.0% |
| ! | TCTATGTATATGTAAGTGAA+GGG | + | chr8.4:72110683-72110702 | MS.gene25077:intron | 25.0% |
| ! | TCTATTTAACAATGAAGTTC+TGG | + | chr8.4:72109276-72109295 | MS.gene25077:intron | 25.0% |
| ! | TTATCTATTGAGTAAACACT+TGG | + | chr8.4:72110493-72110512 | MS.gene25077:intron | 25.0% |
| ! | TTCTATGTATATGTAAGTGA+AGG | + | chr8.4:72110682-72110701 | MS.gene25077:intron | 25.0% |
| ! | TTGTATTCTGATTCTGAATT+TGG | + | chr8.4:72107467-72107486 | MS.gene25077:CDS | 25.0% |
| ! | TTTCTCTATTAGGAAAATAG+CGG | + | chr8.4:72108944-72108963 | MS.gene25077:intron | 25.0% |
| !! | ATAGCATTGAATTGTATGAA+TGG | + | chr8.4:72108065-72108084 | MS.gene25077:intron | 25.0% |
| !! | ATGATAACCTGTAATTTTGT+AGG | + | chr8.4:72109344-72109363 | MS.gene25077:intron | 25.0% |
| !! | ATTTTCCTAATAGAGAAACT+AGG | - | chr8.4:72108942-72108961 | None:intergenic | 25.0% |
| !! | CAATTTGAACTTGTTTGTAA+AGG | + | chr8.4:72109933-72109952 | MS.gene25077:intron | 25.0% |
| !! | GACTTATTAGCTTATCTAAT+GGG | - | chr8.4:72108334-72108353 | None:intergenic | 25.0% |
| !! | TATGATTCATTTGTTGCATT+TGG | - | chr8.4:72109843-72109862 | None:intergenic | 25.0% |
| !! | TGACTTATTAGCTTATCTAA+TGG | - | chr8.4:72108335-72108354 | None:intergenic | 25.0% |
| !!! | AATATATATTTTTCAGGTGG+TGG | - | chr8.4:72107410-72107429 | None:intergenic | 25.0% |
| AAAATGCCAAATGATATCCT+AGG | + | chr8.4:72108593-72108612 | MS.gene25077:intron | 30.0% | |
| AAACTAGAATCAAGAGTTTG+AGG | + | chr8.4:72109749-72109768 | MS.gene25077:intron | 30.0% | |
| AAGCTAAATTTAGCTACAAC+GGG | + | chr8.4:72110125-72110144 | MS.gene25077:intron | 30.0% | |
| AAGTTATCTTGTAGAGCTTA+TGG | + | chr8.4:72107890-72107909 | MS.gene25077:intron | 30.0% | |
| AAGTTTGCAATGAAACCAAA+AGG | + | chr8.4:72110052-72110071 | MS.gene25077:intron | 30.0% | |
| AATACGTCCTACAAAATTAC+AGG | - | chr8.4:72109354-72109373 | None:intergenic | 30.0% | |
| AATGATTGATATGTTCGACT+AGG | + | chr8.4:72108828-72108847 | MS.gene25077:intron | 30.0% | |
| ACGATAGCTATGAAACTTAA+AGG | + | chr8.4:72108526-72108545 | MS.gene25077:CDS | 30.0% | |
| ACTATCCTAGTTTCTCTATT+AGG | + | chr8.4:72108934-72108953 | MS.gene25077:intron | 30.0% | |
| ACTTCGATTATGCAAATTTC+TGG | + | chr8.4:72109627-72109646 | MS.gene25077:intron | 30.0% | |
| AGATAACTGGTATATTGCAA+AGG | + | chr8.4:72108765-72108784 | MS.gene25077:CDS | 30.0% | |
| AGCGAAGCTTACATATTAAA+AGG | - | chr8.4:72109151-72109170 | None:intergenic | 30.0% | |
| AGGAAATACTATAAACGGAT+AGG | + | chr8.4:72110558-72110577 | MS.gene25077:intron | 30.0% | |
| AGTCAACTATACACAAGAAA+AGG | - | chr8.4:72109210-72109229 | None:intergenic | 30.0% | |
| ATATACATAGAAAGCCAACA+AGG | - | chr8.4:72110674-72110693 | None:intergenic | 30.0% | |
| ATCTATTGAGTAAACACTTG+GGG | + | chr8.4:72110495-72110514 | MS.gene25077:intron | 30.0% | |
| ATTTCAGACTTGAACTTGAA+TGG | + | chr8.4:72110968-72110987 | MS.gene25077:CDS | 30.0% | |
| CCAAGCAAGAATTATCAAAA+TGG | + | chr8.4:72107441-72107460 | MS.gene25077:CDS | 30.0% | |
| GATATCCTAGGAAATTTAGA+GGG | + | chr8.4:72108605-72108624 | MS.gene25077:intron | 30.0% | |
| GCAATATACCAGTTATCTTT+GGG | - | chr8.4:72108763-72108782 | None:intergenic | 30.0% | |
| TAAATAGAAGATAGCATTGC+AGG | - | chr8.4:72109264-72109283 | None:intergenic | 30.0% | |
| TATTCTGATTCTGAATTTGG+AGG | + | chr8.4:72107470-72107489 | MS.gene25077:CDS | 30.0% | |
| TCAATATTACTAAAGAGCGA+CGG | - | chr8.4:72110170-72110189 | None:intergenic | 30.0% | |
| TCTGAAAATGGTAAAACTAC+TGG | + | chr8.4:72107623-72107642 | MS.gene25077:CDS | 30.0% | |
| TGACTTATTTCAATGACATG+CGG | + | chr8.4:72109225-72109244 | MS.gene25077:intron | 30.0% | |
| TGATATCCTAGGAAATTTAG+AGG | + | chr8.4:72108604-72108623 | MS.gene25077:intron | 30.0% | |
| TGCAATATACCAGTTATCTT+TGG | - | chr8.4:72108764-72108783 | None:intergenic | 30.0% | |
| TGGTCAGGAAATACTATAAA+CGG | + | chr8.4:72110553-72110572 | MS.gene25077:intron | 30.0% | |
| TTAAAAGAAAAGGACACTCA+CGG | - | chr8.4:72108575-72108594 | None:intergenic | 30.0% | |
| TTAGCTTATCTAATGGGATA+AGG | - | chr8.4:72108328-72108347 | None:intergenic | 30.0% | |
| TTCAGATAAAAAAGGAAACG+GGG | - | chr8.4:72109178-72109197 | None:intergenic | 30.0% | |
| TTCTCTATTAGGAAAATAGC+GGG | + | chr8.4:72108945-72108964 | MS.gene25077:intron | 30.0% | |
| TTGAGATTAAGGACTAGATA+AGG | + | chr8.4:72109506-72109525 | MS.gene25077:intron | 30.0% | |
| TTGAGTGATTATAGTGTAAG+CGG | + | chr8.4:72108137-72108156 | MS.gene25077:intron | 30.0% | |
| TTGATTTCAACAGCTATATC+TGG | + | chr8.4:72107365-72107384 | MS.gene25077:intron | 30.0% | |
| TTGTTTGTAAAGGAGGTTAA+CGG | + | chr8.4:72109943-72109962 | MS.gene25077:intron | 30.0% | |
| ! | AAAACTACTGGAATTTTCTC+TGG | + | chr8.4:72107635-72107654 | MS.gene25077:CDS | 30.0% |
| ! | AAACTACTGGAATTTTCTCT+GGG | + | chr8.4:72107636-72107655 | MS.gene25077:CDS | 30.0% |
| ! | AAATTTAGCTTAGTAGAGCT+AGG | - | chr8.4:72110116-72110135 | None:intergenic | 30.0% |
| ! | AGTTAAAAAAGCCACCTTTT+TGG | - | chr8.4:72107732-72107751 | None:intergenic | 30.0% |
| ! | CTAACATTTTAGGCATGTAA+AGG | - | chr8.4:72109805-72109824 | None:intergenic | 30.0% |
| ! | CTACGTTTTGCAATTTAATC+AGG | - | chr8.4:72109465-72109484 | None:intergenic | 30.0% |
| ! | GTTGCTAAAGTTTGAAACTT+TGG | + | chr8.4:72107507-72107526 | MS.gene25077:intron | 30.0% |
| ! | GTTTTACCATTTTCAGATTC+AGG | - | chr8.4:72107620-72107639 | None:intergenic | 30.0% |
| ! | TCAAAGACTTTAGTGTTGTT+TGG | + | chr8.4:72107751-72107770 | MS.gene25077:intron | 30.0% |
| ! | TTGCAAGTATTGTAACTAGT+TGG | + | chr8.4:72108653-72108672 | MS.gene25077:intron | 30.0% |
| ! | TTTGAACTTGTTTGTAAAGG+AGG | + | chr8.4:72109936-72109955 | MS.gene25077:intron | 30.0% |
| !! | AGAAAAAAAAGGGGTTTTGA+TGG | + | chr8.4:72110533-72110552 | MS.gene25077:intron | 30.0% |
| !! | CCATTTTGATAATTCTTGCT+TGG | - | chr8.4:72107444-72107463 | None:intergenic | 30.0% |
| !! | TCTGTGTTTTTGTAGTTTGA+TGG | + | chr8.4:72108478-72108497 | MS.gene25077:intron | 30.0% |
| !! | TTCTCATTTTTGTTCAACGA+CGG | + | chr8.4:72108432-72108451 | MS.gene25077:intron | 30.0% |
| AACTATGTAAAACCTTGCAG+TGG | - | chr8.4:72109573-72109592 | None:intergenic | 35.0% | |
| AAGTGGAATATTAGTAGAGG+TGG | + | chr8.4:72107689-72107708 | MS.gene25077:CDS | 35.0% | |
| AAGTTCGACAACAACATAGA+TGG | + | chr8.4:72108033-72108052 | MS.gene25077:intron | 35.0% | |
| ATTGTGGTCTGATCTAGTAT+GGG | + | chr8.4:72110335-72110354 | MS.gene25077:intron | 35.0% | |
| CAAAAACACAGAATTGCGTA+AGG | - | chr8.4:72108470-72108489 | None:intergenic | 35.0% | |
| CAGATACCTGAATCTGAAAA+TGG | + | chr8.4:72107611-72107630 | MS.gene25077:CDS | 35.0% | |
| CATCACTTCAGTGCTTAATA+TGG | - | chr8.4:72110724-72110743 | None:intergenic | 35.0% | |
| GATTATGGTGCAGATATACA+CGG | + | chr8.4:72108675-72108694 | MS.gene25077:intron | 35.0% | |
| GCTAAGTGGAATATTAGTAG+AGG | + | chr8.4:72107686-72107705 | MS.gene25077:CDS | 35.0% | |
| GCTATGAAACTTAAAGGAGA+TGG | + | chr8.4:72108532-72108551 | MS.gene25077:CDS | 35.0% | |
| GTAAGCAGTAAGATGGAAAT+GGG | - | chr8.4:72108796-72108815 | None:intergenic | 35.0% | |
| GTATATGTAAGTGAAGGGAT+GGG | + | chr8.4:72110688-72110707 | MS.gene25077:intron | 35.0% | |
| TAAAGGACCAACTAAATTGC+AGG | - | chr8.4:72109788-72109807 | None:intergenic | 35.0% | |
| TATTGTGGTCTGATCTAGTA+TGG | + | chr8.4:72110334-72110353 | MS.gene25077:intron | 35.0% | |
| TCAAACCCTCTAAATTTCCT+AGG | - | chr8.4:72108613-72108632 | None:intergenic | 35.0% | |
| TCAGATAAAAAAGGAAACGG+GGG | - | chr8.4:72109177-72109196 | None:intergenic | 35.0% | |
| TGTAAGCAGTAAGATGGAAA+TGG | - | chr8.4:72108797-72108816 | None:intergenic | 35.0% | |
| TGTATATGTAAGTGAAGGGA+TGG | + | chr8.4:72110687-72110706 | MS.gene25077:intron | 35.0% | |
| TGTTGTCGAACTTGAACAAA+GGG | - | chr8.4:72108026-72108045 | None:intergenic | 35.0% | |
| TTGTTGTCGAACTTGAACAA+AGG | - | chr8.4:72108027-72108046 | None:intergenic | 35.0% | |
| ! | ATGGGTTTCTTCATGTTTTC+TGG | - | chr8.4:72110026-72110045 | None:intergenic | 35.0% |
| ! | ATTTAAACTTTGGGGAGAGT+TGG | - | chr8.4:72109686-72109705 | None:intergenic | 35.0% |
| ! | CTCAATGATTTTGCAGTGTT+TGG | + | chr8.4:72108103-72108122 | MS.gene25077:intron | 35.0% |
| ! | CTCACAAGTTTTTATGCTAG+TGG | + | chr8.4:72107972-72107991 | MS.gene25077:intron | 35.0% |
| ! | GGGTTTGAAGTTTCATTTCA+TGG | + | chr8.4:72108625-72108644 | MS.gene25077:intron | 35.0% |
| ! | TCTGTGACATTGTTTGAGTT+GGG | - | chr8.4:72110003-72110022 | None:intergenic | 35.0% |
| !! | ATTAGTAGAGGTGGATTTTG+TGG | + | chr8.4:72107698-72107717 | MS.gene25077:CDS | 35.0% |
| !! | TAGTGTTGAGGTTTTTGTTG+CGG | - | chr8.4:72108918-72108937 | None:intergenic | 35.0% |
| AAGGAGATGTGAGACTCTAT+GGG | - | chr8.4:72108309-72108328 | None:intergenic | 40.0% | |
| AGAGCTAGGTTTCAACTCAT+CGG | - | chr8.4:72110102-72110121 | None:intergenic | 40.0% | |
| ATAACATTCCCTCTCCAAGT+AGG | - | chr8.4:72110850-72110869 | None:intergenic | 40.0% | |
| ATGAATCCATCACGTGTTCT+TGG | + | chr8.4:72110886-72110905 | MS.gene25077:CDS | 40.0% | |
| ATGTAAAACCTTGCAGTGGA+TGG | - | chr8.4:72109569-72109588 | None:intergenic | 40.0% | |
| CAAAACGTAGTTACCTTGAC+GGG | + | chr8.4:72109475-72109494 | MS.gene25077:intron | 40.0% | |
| CATTGCAAACTTGCAACGAT+GGG | - | chr8.4:72110044-72110063 | None:intergenic | 40.0% | |
| CTAAATTTAGCTACAACGGG+AGG | + | chr8.4:72110128-72110147 | MS.gene25077:intron | 40.0% | |
| CTTTCACTTGAGGTTACTCA+AGG | + | chr8.4:72107662-72107681 | MS.gene25077:CDS | 40.0% | |
| GAAATCAGGTTAACTCGCTT+AGG | + | chr8.4:72109714-72109733 | MS.gene25077:intron | 40.0% | |
| GAACAAGCCTGCAATTTAGT+TGG | + | chr8.4:72109778-72109797 | MS.gene25077:intron | 40.0% | |
| GAGAAACTAGGATAGTGTTG+AGG | - | chr8.4:72108930-72108949 | None:intergenic | 40.0% | |
| GATATGTACCTACTTGGAGA+GGG | + | chr8.4:72110839-72110858 | MS.gene25077:CDS | 40.0% | |
| GATCTAGTATGGGTTTAAGC+TGG | + | chr8.4:72110345-72110364 | MS.gene25077:intron | 40.0% | |
| GCAAAACGTAGTTACCTTGA+CGG | + | chr8.4:72109474-72109493 | MS.gene25077:intron | 40.0% | |
| GCAGATATACACGGAGAATT+GGG | + | chr8.4:72108684-72108703 | MS.gene25077:intron | 40.0% | |
| GTCTGTGACATTGTTTGAGT+TGG | - | chr8.4:72110004-72110023 | None:intergenic | 40.0% | |
| TAAGGAGATGTGAGACTCTA+TGG | - | chr8.4:72108310-72108329 | None:intergenic | 40.0% | |
| TAGCTCGATATGTACCTACT+TGG | + | chr8.4:72110833-72110852 | MS.gene25077:CDS | 40.0% | |
| TCATTGCAAACTTGCAACGA+TGG | - | chr8.4:72110045-72110064 | None:intergenic | 40.0% | |
| TGCAGATATACACGGAGAAT+TGG | + | chr8.4:72108683-72108702 | MS.gene25077:intron | 40.0% | |
| TGTTCTGGTCTGTTCTATTG+TGG | + | chr8.4:72110319-72110338 | MS.gene25077:intron | 40.0% | |
| TTTACGTGCCCAAAGATAAC+TGG | + | chr8.4:72108752-72108771 | MS.gene25077:CDS | 40.0% | |
| ! | AGTTCAAGTCTGAAATCACC+TGG | - | chr8.4:72110964-72110983 | None:intergenic | 40.0% |
| ! | GTAATTTTCCATCCACTGCA+AGG | + | chr8.4:72109558-72109577 | MS.gene25077:intron | 40.0% |
| ! | GTTTGATGGCTTCATTGACT+TGG | + | chr8.4:72108492-72108511 | MS.gene25077:intron | 40.0% |
| ! | TCAGGTTGTAAGCAGTAAGA+TGG | - | chr8.4:72108803-72108822 | None:intergenic | 40.0% |
| ! | TCTTTTTCTGTCAATGCCGA+GGG | + | chr8.4:72110913-72110932 | MS.gene25077:CDS | 40.0% |
| !! | AAAAAGGGGTTTTGATGGTC+AGG | + | chr8.4:72110538-72110557 | MS.gene25077:intron | 40.0% |
| !! | GGGCTTGAACTTTGAGATTA+AGG | + | chr8.4:72109495-72109514 | MS.gene25077:intron | 40.0% |
| !! | TTGTTTGAGTTGGGACTATG+AGG | - | chr8.4:72109994-72110013 | None:intergenic | 40.0% |
| AGGAGATGTGAGACTCTATG+GGG | - | chr8.4:72108308-72108327 | None:intergenic | 45.0% | |
| AGGTTTCAACTCATCGGAGT+TGG | - | chr8.4:72110096-72110115 | None:intergenic | 45.0% | |
| AGTGAAGGGATGGGTATCAT+TGG | + | chr8.4:72110697-72110716 | MS.gene25077:intron | 45.0% | |
| CATATCGAGCTAGAGGAATC+TGG | - | chr8.4:72110825-72110844 | None:intergenic | 45.0% | |
| CATTGGGTTCTCACTTCTCA+TGG | - | chr8.4:72111001-72111020 | None:intergenic | 45.0% | |
| CGATATGTACCTACTTGGAG+AGG | + | chr8.4:72110838-72110857 | MS.gene25077:CDS | 45.0% | |
| GAGAATTGGGTTAACTCACC+TGG | + | chr8.4:72108697-72108716 | MS.gene25077:CDS | 45.0% | |
| GGTTTCAACTCATCGGAGTT+GGG | - | chr8.4:72110095-72110114 | None:intergenic | 45.0% | |
| GTAGGTACATATCGAGCTAG+AGG | - | chr8.4:72110832-72110851 | None:intergenic | 45.0% | |
| GTATGGGTTTAAGCTGGATC+TGG | + | chr8.4:72110351-72110370 | MS.gene25077:intron | 45.0% | |
| GTTGGGTTCATTCATCTGGT+TGG | - | chr8.4:72110078-72110097 | None:intergenic | 45.0% | |
| TTGTGGAATGCGCTCCAAAA+AGG | + | chr8.4:72107715-72107734 | MS.gene25077:CDS | 45.0% | |
| ! | AGGTTACTCAAGGTGCTAAG+TGG | + | chr8.4:72107672-72107691 | MS.gene25077:CDS | 45.0% |
| ! | CTCTGGGAATCTTTCACTTG+AGG | + | chr8.4:72107652-72107671 | MS.gene25077:CDS | 45.0% |
| ! | GTCTTTTTCTGTCAATGCCG+AGG | + | chr8.4:72110912-72110931 | MS.gene25077:CDS | 45.0% |
| !!! | CATTCATCTGGTTGGCCTTT+TGG | - | chr8.4:72110070-72110089 | None:intergenic | 45.0% |
| !!! | TGCTTGGTTTTGTGCCTTGT+TGG | + | chr8.4:72110657-72110676 | MS.gene25077:intron | 45.0% |
| ACACCACCACAAATCACCTG+AGG | - | chr8.4:72110377-72110396 | None:intergenic | 50.0% | |
| ACTAAAGAGCGACGGATGAC+TGG | - | chr8.4:72110162-72110181 | None:intergenic | 50.0% | |
| ACTAGCTGACGCAGTTGCAA+TGG | + | chr8.4:72108984-72109003 | MS.gene25077:intron | 50.0% | |
| ATCTGGCCTCAGGTGATTTG+TGG | + | chr8.4:72110368-72110387 | MS.gene25077:intron | 50.0% | |
| CGGAGTTGGGTTCATTCATC+TGG | - | chr8.4:72110082-72110101 | None:intergenic | 50.0% | |
| CTCAAAGTTCAAGCCCGTCA+AGG | - | chr8.4:72109491-72109510 | None:intergenic | 50.0% | |
| GACAGATGGAGGACAACTCA+TGG | + | chr8.4:72108719-72108738 | MS.gene25077:CDS | 50.0% | |
| GACATGCCAAGAACACGTGA+TGG | - | chr8.4:72110895-72110914 | None:intergenic | 50.0% | |
| GGAGATGTGAGACTCTATGG+GGG | - | chr8.4:72108307-72108326 | None:intergenic | 50.0% | |
| GGTTAACTCACCTGGACAGA+TGG | + | chr8.4:72108705-72108724 | MS.gene25077:CDS | 50.0% | |
| TAACTCACCTGGACAGATGG+AGG | + | chr8.4:72108708-72108727 | MS.gene25077:CDS | 50.0% | |
| TGGAATGCGCTCCAAAAAGG+TGG | + | chr8.4:72107718-72107737 | MS.gene25077:intron | 50.0% | |
| TTTAAGCTGGATCTGGCCTC+AGG | + | chr8.4:72110358-72110377 | MS.gene25077:intron | 50.0% | |
| ! | AGGTGATTTGTGGTGGTGTG+GGG | + | chr8.4:72110378-72110397 | MS.gene25077:intron | 50.0% |
| ! | CAGGTGATTTGTGGTGGTGT+GGG | + | chr8.4:72110377-72110396 | MS.gene25077:intron | 50.0% |
| ! | TCAGGTGATTTGTGGTGGTG+TGG | + | chr8.4:72110376-72110395 | MS.gene25077:intron | 50.0% |
| ! | TTTTCTGTCAATGCCGAGGG+TGG | + | chr8.4:72110916-72110935 | MS.gene25077:CDS | 50.0% |
| CTGCGTCAGCTAGTAGAGAC+TGG | - | chr8.4:72108978-72108997 | None:intergenic | 55.0% | |
| CTGGTCCAGATCTAGCACCT+GGG | - | chr8.4:72110945-72110964 | None:intergenic | 55.0% | |
| GAGTTGTCCTCCATCTGTCC+AGG | - | chr8.4:72108718-72108737 | None:intergenic | 55.0% | |
| ! | TGATTTGTGGTGGTGTGGGG+TGG | + | chr8.4:72110381-72110400 | MS.gene25077:intron | 55.0% |
| ! | TGGCCTCAGGTGATTTGTGG+TGG | + | chr8.4:72110371-72110390 | MS.gene25077:intron | 55.0% |
| AGAGCGACGGATGACTGGAC+TGG | - | chr8.4:72110157-72110176 | None:intergenic | 60.0% | |
| CCAGGTGCTAGATCTGGACC+AGG | + | chr8.4:72110943-72110962 | MS.gene25077:CDS | 60.0% | |
| CCTGGTCCAGATCTAGCACC+TGG | - | chr8.4:72110946-72110965 | None:intergenic | 60.0% | |
| GAGCGACGGATGACTGGACT+GGG | - | chr8.4:72110156-72110175 | None:intergenic | 60.0% | |
| GGTGTCCCAGGTGCTAGATC+TGG | + | chr8.4:72110937-72110956 | MS.gene25077:CDS | 60.0% | |
| AATGCCGAGGGTGGTGTCCC+AGG | + | chr8.4:72110925-72110944 | MS.gene25077:CDS | 65.0% | |
| AGCACCTGGGACACCACCCT+CGG | - | chr8.4:72110932-72110951 | None:intergenic | 65.0% | |
| TGGTGTGGGGTGGTGCGGTA+CGG | + | chr8.4:72110391-72110410 | MS.gene25077:intron | 65.0% | |
| ! | TGTGGTGGTGTGGGGTGGTG+CGG | + | chr8.4:72110386-72110405 | MS.gene25077:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 72107286 | 72111026 | 72107286 | ID=MS.gene25077 |
| chr8.4 | mRNA | 72107286 | 72111026 | 72107286 | ID=MS.gene25077.t1;Parent=MS.gene25077 |
| chr8.4 | exon | 72107286 | 72107304 | 72107286 | ID=MS.gene25077.t1.exon1;Parent=MS.gene25077.t1 |
| chr8.4 | CDS | 72107286 | 72107304 | 72107286 | ID=cds.MS.gene25077.t1;Parent=MS.gene25077.t1 |
| chr8.4 | exon | 72107378 | 72107491 | 72107378 | ID=MS.gene25077.t1.exon2;Parent=MS.gene25077.t1 |
| chr8.4 | CDS | 72107378 | 72107491 | 72107378 | ID=cds.MS.gene25077.t1;Parent=MS.gene25077.t1 |
| chr8.4 | exon | 72107591 | 72107736 | 72107591 | ID=MS.gene25077.t1.exon3;Parent=MS.gene25077.t1 |
| chr8.4 | CDS | 72107591 | 72107736 | 72107591 | ID=cds.MS.gene25077.t1;Parent=MS.gene25077.t1 |
| chr8.4 | exon | 72108493 | 72108573 | 72108493 | ID=MS.gene25077.t1.exon4;Parent=MS.gene25077.t1 |
| chr8.4 | CDS | 72108493 | 72108573 | 72108493 | ID=cds.MS.gene25077.t1;Parent=MS.gene25077.t1 |
| chr8.4 | exon | 72108688 | 72108786 | 72108688 | ID=MS.gene25077.t1.exon5;Parent=MS.gene25077.t1 |
| chr8.4 | CDS | 72108688 | 72108786 | 72108688 | ID=cds.MS.gene25077.t1;Parent=MS.gene25077.t1 |
| chr8.4 | exon | 72110826 | 72111026 | 72110826 | ID=MS.gene25077.t1.exon6;Parent=MS.gene25077.t1 |
| chr8.4 | CDS | 72110826 | 72111026 | 72110826 | ID=cds.MS.gene25077.t1;Parent=MS.gene25077.t1 |
| Gene Sequence |
| Protein sequence |
