Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25982.t1 | XP_003601234.1 | 97.9 | 282 | 6 | 0 | 37 | 318 | 51 | 332 | 1.10E-155 | 559.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25982.t1 | G7J4W7 | 97.9 | 282 | 6 | 0 | 37 | 318 | 51 | 332 | 8.3e-156 | 559.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049284 | MS.gene25982 | 0.825822 | 3.80E-54 | -1.69E-46 |
| MS.gene049427 | MS.gene25982 | 0.8838 | 3.30E-71 | -1.69E-46 |
| MS.gene049491 | MS.gene25982 | 0.821356 | 4.22E-53 | -1.69E-46 |
| MS.gene050076 | MS.gene25982 | 0.821863 | 3.22E-53 | -1.69E-46 |
| MS.gene050404 | MS.gene25982 | 0.822859 | 1.89E-53 | -1.69E-46 |
| MS.gene050432 | MS.gene25982 | 0.825335 | 4.96E-54 | -1.69E-46 |
| MS.gene050529 | MS.gene25982 | 0.834116 | 3.61E-56 | -1.69E-46 |
| MS.gene050538 | MS.gene25982 | 0.802839 | 4.64E-49 | -1.69E-46 |
| MS.gene050767 | MS.gene25982 | 0.811262 | 7.64E-51 | -1.69E-46 |
| MS.gene050770 | MS.gene25982 | 0.814833 | 1.26E-51 | -1.69E-46 |
| MS.gene050812 | MS.gene25982 | 0.845215 | 4.67E-59 | -1.69E-46 |
| MS.gene05101 | MS.gene25982 | 0.815021 | 1.14E-51 | -1.69E-46 |
| MS.gene051228 | MS.gene25982 | 0.828255 | 9.95E-55 | -1.69E-46 |
| MS.gene051471 | MS.gene25982 | 0.835536 | 1.58E-56 | -1.69E-46 |
| MS.gene051617 | MS.gene25982 | 0.810735 | 9.94E-51 | -1.69E-46 |
| MS.gene051907 | MS.gene25982 | -0.817837 | 2.68E-52 | -1.69E-46 |
| MS.gene052078 | MS.gene25982 | 0.820019 | 8.55E-53 | -1.69E-46 |
| MS.gene052188 | MS.gene25982 | 0.838685 | 2.48E-57 | -1.69E-46 |
| MS.gene052290 | MS.gene25982 | 0.822014 | 2.97E-53 | -1.69E-46 |
| MS.gene052310 | MS.gene25982 | 0.851634 | 7.81E-61 | -1.69E-46 |
| MS.gene052340 | MS.gene25982 | 0.816128 | 6.49E-52 | -1.69E-46 |
| MS.gene052379 | MS.gene25982 | 0.819072 | 1.41E-52 | -1.69E-46 |
| MS.gene053009 | MS.gene25982 | 0.821716 | 3.48E-53 | -1.69E-46 |
| MS.gene053104 | MS.gene25982 | 0.812172 | 4.85E-51 | -1.69E-46 |
| MS.gene053107 | MS.gene25982 | 0.804648 | 1.95E-49 | -1.69E-46 |
| MS.gene053322 | MS.gene25982 | 0.812168 | 4.86E-51 | -1.69E-46 |
| MS.gene053557 | MS.gene25982 | 0.828001 | 1.15E-54 | -1.69E-46 |
| MS.gene054123 | MS.gene25982 | 0.800645 | 1.31E-48 | -1.69E-46 |
| MS.gene054376 | MS.gene25982 | 0.819431 | 1.17E-52 | -1.69E-46 |
| MS.gene055254 | MS.gene25982 | 0.808628 | 2.82E-50 | -1.69E-46 |
| MS.gene055277 | MS.gene25982 | 0.807265 | 5.50E-50 | -1.69E-46 |
| MS.gene055397 | MS.gene25982 | 0.859973 | 2.85E-63 | -1.69E-46 |
| MS.gene055412 | MS.gene25982 | 0.814358 | 1.60E-51 | -1.69E-46 |
| MS.gene055499 | MS.gene25982 | 0.809956 | 1.46E-50 | -1.69E-46 |
| MS.gene055896 | MS.gene25982 | 0.828601 | 8.21E-55 | -1.69E-46 |
| MS.gene056609 | MS.gene25982 | 0.875009 | 4.32E-68 | -1.69E-46 |
| MS.gene056612 | MS.gene25982 | 0.80504 | 1.62E-49 | -1.69E-46 |
| MS.gene056659 | MS.gene25982 | 0.817529 | 3.15E-52 | -1.69E-46 |
| MS.gene056897 | MS.gene25982 | 0.827552 | 1.47E-54 | -1.69E-46 |
| MS.gene056903 | MS.gene25982 | 0.80788 | 4.07E-50 | -1.69E-46 |
| MS.gene057011 | MS.gene25982 | 0.820844 | 5.53E-53 | -1.69E-46 |
| MS.gene057129 | MS.gene25982 | 0.822838 | 1.91E-53 | -1.69E-46 |
| MS.gene057146 | MS.gene25982 | 0.808021 | 3.80E-50 | -1.69E-46 |
| MS.gene057246 | MS.gene25982 | 0.83382 | 4.28E-56 | -1.69E-46 |
| MS.gene058082 | MS.gene25982 | 0.830643 | 2.62E-55 | -1.69E-46 |
| MS.gene058233 | MS.gene25982 | 0.806243 | 9.04E-50 | -1.69E-46 |
| MS.gene058365 | MS.gene25982 | 0.808239 | 3.42E-50 | -1.69E-46 |
| MS.gene058660 | MS.gene25982 | 0.839772 | 1.30E-57 | -1.69E-46 |
| MS.gene058928 | MS.gene25982 | 0.810026 | 1.41E-50 | -1.69E-46 |
| MS.gene05934 | MS.gene25982 | 0.802325 | 5.92E-49 | -1.69E-46 |
| MS.gene059536 | MS.gene25982 | 0.826578 | 2.51E-54 | -1.69E-46 |
| MS.gene059597 | MS.gene25982 | 0.819837 | 9.42E-53 | -1.69E-46 |
| MS.gene05959 | MS.gene25982 | 0.81712 | 3.89E-52 | -1.69E-46 |
| MS.gene059676 | MS.gene25982 | 0.822952 | 1.80E-53 | -1.69E-46 |
| MS.gene059688 | MS.gene25982 | 0.823765 | 1.16E-53 | -1.69E-46 |
| MS.gene059692 | MS.gene25982 | 0.825049 | 5.79E-54 | -1.69E-46 |
| MS.gene059695 | MS.gene25982 | 0.821496 | 3.92E-53 | -1.69E-46 |
| MS.gene059708 | MS.gene25982 | 0.823078 | 1.68E-53 | -1.69E-46 |
| MS.gene059858 | MS.gene25982 | 0.808182 | 3.51E-50 | -1.69E-46 |
| MS.gene059894 | MS.gene25982 | 0.846888 | 1.64E-59 | -1.69E-46 |
| MS.gene059960 | MS.gene25982 | 0.870305 | 1.61E-66 | -1.69E-46 |
| MS.gene060407 | MS.gene25982 | 0.829881 | 4.02E-55 | -1.69E-46 |
| MS.gene060804 | MS.gene25982 | 0.829212 | 5.84E-55 | -1.69E-46 |
| MS.gene060818 | MS.gene25982 | 0.851991 | 6.19E-61 | -1.69E-46 |
| MS.gene061041 | MS.gene25982 | 0.82213 | 2.79E-53 | -1.69E-46 |
| MS.gene061051 | MS.gene25982 | -0.826854 | 2.16E-54 | -1.69E-46 |
| MS.gene061200 | MS.gene25982 | 0.813755 | 2.18E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25982.t1 | MTR_3g077490 | 97.872 | 282 | 6 | 0 | 37 | 318 | 51 | 332 | 0.0 | 573 |
| MS.gene25982.t1 | MTR_4g105500 | 55.944 | 286 | 118 | 2 | 40 | 318 | 68 | 352 | 1.63e-103 | 307 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25982.t1 | AT5G63050 | 44.863 | 292 | 148 | 3 | 40 | 318 | 48 | 339 | 1.20e-81 | 251 |
| MS.gene25982.t1 | AT5G63050 | 44.863 | 292 | 148 | 3 | 40 | 318 | 54 | 345 | 1.38e-81 | 251 |
Find 68 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAAGCAAAATATTTGTTTA+AGG | 0.141032 | 3.3:+65757060 | MS.gene25982:CDS |
| CAAAGGAACTAACTCCATTA+TGG | 0.172017 | 3.3:+65758669 | MS.gene25982:CDS |
| TGAGTCATTTGTAGAGTTTC+AGG | 0.172652 | 3.3:-65758119 | None:intergenic |
| CGGCATCCAGGGACAGAAAA+TGG | 0.202023 | 3.3:-65758181 | None:intergenic |
| AGTACCTTCTTGGTGCATTT+TGG | 0.204122 | 3.3:+65758793 | MS.gene25982:CDS |
| ATTCAGGAAGCAGGGCTAAT+TGG | 0.312850 | 3.3:+65757886 | MS.gene25982:CDS |
| TACTTAGGAAAGTACCTTCT+TGG | 0.316335 | 3.3:+65758783 | MS.gene25982:CDS |
| AAAGGAACTAACTCCATTAT+GGG | 0.335355 | 3.3:+65758670 | MS.gene25982:CDS |
| CTGATTGCCCGACAATAATA+TGG | 0.338312 | 3.3:-65758986 | None:intergenic |
| AGTATTGCAGGAATGGTTAA+TGG | 0.345772 | 3.3:+65758931 | MS.gene25982:CDS |
| AAGGATATTGAAAGTATTGC+AGG | 0.361213 | 3.3:+65758919 | MS.gene25982:CDS |
| TTGATTATGTGGAATCAATA+TGG | 0.372639 | 3.3:+65758963 | MS.gene25982:CDS |
| TTGACAAAGCATCACATGAT+TGG | 0.407661 | 3.3:+65757014 | MS.gene25982:CDS |
| TTATTTATTGTTTCCAGTGT+AGG | 0.409993 | 3.3:+65757789 | MS.gene25982:CDS |
| AATCCTCAAAGGTTTGATCT+TGG | 0.413593 | 3.3:-65757832 | None:intergenic |
| AGAACTCAAAATGATAATTC+AGG | 0.416403 | 3.3:+65757870 | MS.gene25982:CDS |
| CTGGCTGTTAATGTAAAATA+TGG | 0.423757 | 3.3:+65758635 | MS.gene25982:CDS |
| CTGCAGTGTTCCTCTGTACC+TGG | 0.423978 | 3.3:+65758616 | MS.gene25982:intron |
| TATTTATTGTTTCCAGTGTA+GGG | 0.425512 | 3.3:+65757790 | MS.gene25982:CDS |
| ATGTGTAAAGCCACAATTAG+TGG | 0.427250 | 3.3:-65758701 | None:intergenic |
| GGCATTTGTCATGGAGCAAA+AGG | 0.445901 | 3.3:+65756973 | None:intergenic |
| AAAATGATAATTCAGGAAGC+AGG | 0.451996 | 3.3:+65757877 | MS.gene25982:CDS |
| AGAGTTTCAGGTAAAATTGT+GGG | 0.465553 | 3.3:-65758107 | None:intergenic |
| GTATCGTTATTGCGGCATCC+AGG | 0.470073 | 3.3:-65758193 | None:intergenic |
| GGACAAGTATCTTGATTATG+TGG | 0.490040 | 3.3:+65758952 | MS.gene25982:CDS |
| CAATATGGCCATATTATTGT+CGG | 0.490731 | 3.3:+65758978 | MS.gene25982:CDS |
| TAGAGTTTCAGGTAAAATTG+TGG | 0.493784 | 3.3:-65758108 | None:intergenic |
| TTCTCGTATGCATCTGAAGC+AGG | 0.495588 | 3.3:+65757969 | MS.gene25982:CDS |
| TCTACAAATGACTCATAGTA+AGG | 0.497248 | 3.3:+65758127 | MS.gene25982:CDS |
| GGCATCCAGGGACAGAAAAT+GGG | 0.498531 | 3.3:-65758180 | None:intergenic |
| TATTGAAAGTATTGCAGGAA+TGG | 0.510575 | 3.3:+65758924 | MS.gene25982:CDS |
| CAAATGACTCATAGTAAGGA+TGG | 0.513548 | 3.3:+65758131 | MS.gene25982:CDS |
| AATATGGCCATATTATTGTC+GGG | 0.515586 | 3.3:+65758979 | MS.gene25982:CDS |
| TTGAGGATTTCATGCTTCAA+AGG | 0.523800 | 3.3:+65757846 | MS.gene25982:CDS |
| TATCCAAGATCAAACCTTTG+AGG | 0.525924 | 3.3:+65757829 | MS.gene25982:CDS |
| GCTTCAGATGCATACGAGAA+TGG | 0.526668 | 3.3:-65757966 | None:intergenic |
| GGTAAAATTGTGGGAGTCGT+CGG | 0.527764 | 3.3:-65758098 | None:intergenic |
| CTGTTGGACTAGAGGAGAGT+GGG | 0.530623 | 3.3:+65757928 | MS.gene25982:CDS |
| GAAGCAGGGCTAATTGGTTG+AGG | 0.530888 | 3.3:+65757892 | MS.gene25982:CDS |
| AGGGCACCTAAAACCTCTGT+TGG | 0.544521 | 3.3:+65757912 | MS.gene25982:CDS |
| ATCGGACTGTCGAAATACTT+AGG | 0.549044 | 3.3:+65758768 | MS.gene25982:CDS |
| AAGCAGGGCTAATTGGTTGA+GGG | 0.550081 | 3.3:+65757893 | MS.gene25982:CDS |
| TCTATGCCTCAAGCTTCAAT+CGG | 0.551892 | 3.3:+65758750 | MS.gene25982:CDS |
| ATATGGTGCTGAAGTTTCAA+AGG | 0.559682 | 3.3:+65758652 | MS.gene25982:CDS |
| TATCGTTATTGCGGCATCCA+GGG | 0.564738 | 3.3:-65758192 | None:intergenic |
| AAAGCAAGGAGGCCCTACAC+TGG | 0.565797 | 3.3:-65757802 | None:intergenic |
| TAAAACCTCTGTTGGACTAG+AGG | 0.567446 | 3.3:+65757920 | MS.gene25982:CDS |
| TTGAAGCATGAAATCCTCAA+AGG | 0.573371 | 3.3:-65757843 | None:intergenic |
| ATCATCATGTCAAGAAGTAG+AGG | 0.576608 | 3.3:+65758061 | MS.gene25982:CDS |
| AAATGATAATTCAGGAAGCA+GGG | 0.576629 | 3.3:+65757878 | MS.gene25982:CDS |
| ATACGAGAATGGCACGTTGT+GGG | 0.587563 | 3.3:-65757955 | None:intergenic |
| CAACAAAGGTATCGTTATTG+CGG | 0.587856 | 3.3:-65758201 | None:intergenic |
| TTACACATCATTATAATCCG+TGG | 0.595663 | 3.3:+65758716 | MS.gene25982:CDS |
| ATTATATACAGCTAACAAGA+AGG | 0.596078 | 3.3:+65758900 | MS.gene25982:CDS |
| TTTGCCAAAATGCACCAAGA+AGG | 0.609660 | 3.3:-65758797 | None:intergenic |
| ATCTTGGATACACAAAAGCA+AGG | 0.615832 | 3.3:-65757816 | None:intergenic |
| TCTGTTGGACTAGAGGAGAG+TGG | 0.626726 | 3.3:+65757927 | MS.gene25982:CDS |
| GAAAAGCAGATGATGTTGCA+AGG | 0.634556 | 3.3:-65757998 | None:intergenic |
| GACAGTCCGATTGAAGCTTG+AGG | 0.637429 | 3.3:-65758756 | None:intergenic |
| ACATTAACAGCCAGGTACAG+AGG | 0.638292 | 3.3:-65758626 | None:intergenic |
| CATACTTACAATATCAACAA+AGG | 0.639148 | 3.3:-65758215 | None:intergenic |
| CATACGAGAATGGCACGTTG+TGG | 0.639241 | 3.3:-65757956 | None:intergenic |
| CATAGAGTGCACACAGACCA+CGG | 0.640979 | 3.3:-65758733 | None:intergenic |
| ACATGATTGGAAGAACAGAC+TGG | 0.656412 | 3.3:+65757027 | MS.gene25982:CDS |
| AAATTGCAGTCTATCTTCTG+CGG | 0.658647 | 3.3:+65758852 | MS.gene25982:CDS |
| TGTTGGACTAGAGGAGAGTG+GGG | 0.705793 | 3.3:+65757929 | MS.gene25982:CDS |
| ACTCTCCTCTAGTCCAACAG+AGG | 0.711106 | 3.3:-65757925 | None:intergenic |
| TTGGATACACAAAAGCAAGG+AGG | 0.762948 | 3.3:-65757813 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTTTTTTTCGATATTT+TGG | + | chr3.3:65758405-65758424 | MS.gene25982:intron | 10.0% |
| !! | ATTTAAGGAAAATAAAATGA+AGG | + | chr3.3:65758450-65758469 | MS.gene25982:intron | 15.0% |
| !! | TAAAGCAAAATATTTGTTTA+AGG | + | chr3.3:65757060-65757079 | MS.gene25982:CDS | 15.0% |
| !! | TCAAACGTATTATATATATA+GGG | - | chr3.3:65757464-65757483 | None:intergenic | 15.0% |
| !! | TTCAAACGTATTATATATAT+AGG | - | chr3.3:65757465-65757484 | None:intergenic | 15.0% |
| !! | TTTAAGGAAAATAAAATGAA+GGG | + | chr3.3:65758451-65758470 | MS.gene25982:intron | 15.0% |
| !!! | AACAAATATTTTGCTTTAAT+AGG | - | chr3.3:65757058-65757077 | None:intergenic | 15.0% |
| !! | TGTATTTGTCTTCTTATAAA+GGG | + | chr3.3:65757765-65757784 | MS.gene25982:intron | 20.0% |
| !! | TTAAGGAAAATAAAATGAAG+GGG | + | chr3.3:65758452-65758471 | MS.gene25982:intron | 20.0% |
| !! | TTCTAATATTGATGTTAAGT+AGG | - | chr3.3:65757165-65757184 | None:intergenic | 20.0% |
| !! | TTGTATTTGTCTTCTTATAA+AGG | + | chr3.3:65757764-65757783 | MS.gene25982:intron | 20.0% |
| !! | TTTATAAGAAGACAAATACA+AGG | - | chr3.3:65757765-65757784 | None:intergenic | 20.0% |
| !!! | AGTTACATAATATATTGACT+AGG | - | chr3.3:65758498-65758517 | None:intergenic | 20.0% |
| ! | AGAACTCAAAATGATAATTC+AGG | + | chr3.3:65757870-65757889 | MS.gene25982:CDS | 25.0% |
| ! | AGGAATGTTAATGAATGAAT+TGG | + | chr3.3:65757296-65757315 | MS.gene25982:intron | 25.0% |
| ! | ATAGTCAAAGTACAATTCTA+AGG | + | chr3.3:65757234-65757253 | MS.gene25982:intron | 25.0% |
| ! | ATTATATACAGCTAACAAGA+AGG | + | chr3.3:65758900-65758919 | MS.gene25982:CDS | 25.0% |
| ! | CATACTTACAATATCAACAA+AGG | - | chr3.3:65758218-65758237 | None:intergenic | 25.0% |
| ! | CATTCATTAACATTCCTTAT+CGG | - | chr3.3:65757293-65757312 | None:intergenic | 25.0% |
| ! | GGAATGTTAATGAATGAATT+GGG | + | chr3.3:65757297-65757316 | MS.gene25982:intron | 25.0% |
| ! | GTTGTGATATATTTGTGAAA+GGG | + | chr3.3:65758256-65758275 | MS.gene25982:intron | 25.0% |
| ! | TAAGGAAAATAAAATGAAGG+GGG | + | chr3.3:65758453-65758472 | MS.gene25982:intron | 25.0% |
| ! | TAATCGTTTATCTTAGTTCA+TGG | - | chr3.3:65757265-65757284 | None:intergenic | 25.0% |
| ! | TATTGTGCAATCAATGTATT+TGG | - | chr3.3:65758565-65758584 | None:intergenic | 25.0% |
| ! | TATTTATTGTTTCCAGTGTA+GGG | + | chr3.3:65757790-65757809 | MS.gene25982:CDS | 25.0% |
| ! | TGAACAACAAAACATGTATA+TGG | - | chr3.3:65758308-65758327 | None:intergenic | 25.0% |
| ! | TGTTGTGATATATTTGTGAA+AGG | + | chr3.3:65758255-65758274 | MS.gene25982:intron | 25.0% |
| ! | TTATTTATTGTTTCCAGTGT+AGG | + | chr3.3:65757789-65757808 | MS.gene25982:CDS | 25.0% |
| ! | TTGATTATGTGGAATCAATA+TGG | + | chr3.3:65758963-65758982 | MS.gene25982:CDS | 25.0% |
| !!! | AAACTTTAGGTTGGAATTTA+AGG | + | chr3.3:65758435-65758454 | MS.gene25982:intron | 25.0% |
| AAAAATTAGACACTGATGTC+AGG | + | chr3.3:65757110-65757129 | MS.gene25982:intron | 30.0% | |
| AAAATGATAATTCAGGAAGC+AGG | + | chr3.3:65757877-65757896 | MS.gene25982:CDS | 30.0% | |
| AAAATTAGACACTGATGTCA+GGG | + | chr3.3:65757111-65757130 | MS.gene25982:intron | 30.0% | |
| AAACGATTACAATTCCGATA+AGG | + | chr3.3:65757276-65757295 | MS.gene25982:intron | 30.0% | |
| AAAGGAACTAACTCCATTAT+GGG | + | chr3.3:65758670-65758689 | MS.gene25982:CDS | 30.0% | |
| AAATGATAATTCAGGAAGCA+GGG | + | chr3.3:65757878-65757897 | MS.gene25982:CDS | 30.0% | |
| AACCACCAGATTCAATTTAA+CGG | - | chr3.3:65757387-65757406 | None:intergenic | 30.0% | |
| AACTCAGTGACTATTATCAT+TGG | - | chr3.3:65757204-65757223 | None:intergenic | 30.0% | |
| AAGGAAAATAAAATGAAGGG+GGG | + | chr3.3:65758454-65758473 | MS.gene25982:intron | 30.0% | |
| AATATGGCCATATTATTGTC+GGG | + | chr3.3:65758979-65758998 | MS.gene25982:CDS | 30.0% | |
| ACTCAGTGACTATTATCATT+GGG | - | chr3.3:65757203-65757222 | None:intergenic | 30.0% | |
| AGTATAGTTCTTGTAGAGTT+GGG | + | chr3.3:65757507-65757526 | MS.gene25982:intron | 30.0% | |
| CAATATGGCCATATTATTGT+CGG | + | chr3.3:65758978-65758997 | MS.gene25982:CDS | 30.0% | |
| CATTACCGTTAAATTGAATC+TGG | + | chr3.3:65757379-65757398 | MS.gene25982:intron | 30.0% | |
| CTGGCTGTTAATGTAAAATA+TGG | + | chr3.3:65758635-65758654 | MS.gene25982:CDS | 30.0% | |
| TAGTATAGTTCTTGTAGAGT+TGG | + | chr3.3:65757506-65757525 | MS.gene25982:intron | 30.0% | |
| TCTACAAATGACTCATAGTA+AGG | + | chr3.3:65758127-65758146 | MS.gene25982:CDS | 30.0% | |
| TGCAGATGGAAGATAAAATT+AGG | - | chr3.3:65758601-65758620 | None:intergenic | 30.0% | |
| TTACACATCATTATAATCCG+TGG | + | chr3.3:65758716-65758735 | MS.gene25982:CDS | 30.0% | |
| TTCATGGACTCTTCAAAAAA+TGG | + | chr3.3:65758018-65758037 | MS.gene25982:CDS | 30.0% | |
| ! | AGAGTTTCAGGTAAAATTGT+GGG | - | chr3.3:65758110-65758129 | None:intergenic | 30.0% |
| ! | ATCCGAGGAAAATGAATTTT+GGG | + | chr3.3:65757540-65757559 | MS.gene25982:intron | 30.0% |
| ! | CAAGAAGTAGAGGAAATTTT+TGG | + | chr3.3:65758071-65758090 | MS.gene25982:CDS | 30.0% |
| ! | CATATTTTACATTAACAGCC+AGG | - | chr3.3:65758637-65758656 | None:intergenic | 30.0% |
| ! | GTGTCTAATTTTTCACGAAA+AGG | - | chr3.3:65757103-65757122 | None:intergenic | 30.0% |
| ! | TAACTCCATTATGGGTTTTT+GGG | + | chr3.3:65758678-65758697 | MS.gene25982:CDS | 30.0% |
| ! | TAGAGTTTCAGGTAAAATTG+TGG | - | chr3.3:65758111-65758130 | None:intergenic | 30.0% |
| ! | TATCCGAGGAAAATGAATTT+TGG | + | chr3.3:65757539-65757558 | MS.gene25982:intron | 30.0% |
| ! | TTGGCAAACTACTACATTTT+TGG | + | chr3.3:65758812-65758831 | MS.gene25982:CDS | 30.0% |
| !! | AAGGATATTGAAAGTATTGC+AGG | + | chr3.3:65758919-65758938 | MS.gene25982:CDS | 30.0% |
| !! | ATGTGTTTTAAGCTCGATAT+AGG | - | chr3.3:65758878-65758897 | None:intergenic | 30.0% |
| !! | TATTGAAAGTATTGCAGGAA+TGG | + | chr3.3:65758924-65758943 | MS.gene25982:CDS | 30.0% |
| !! | TTTTGGTTGTAGCAAACTTT+AGG | + | chr3.3:65758422-65758441 | MS.gene25982:intron | 30.0% |
| AAAATAAAATGAAGGGGGGT+GGG | + | chr3.3:65758458-65758477 | MS.gene25982:intron | 35.0% | |
| AAATTGCAGTCTATCTTCTG+CGG | + | chr3.3:65758852-65758871 | MS.gene25982:CDS | 35.0% | |
| AATCCTCAAAGGTTTGATCT+TGG | - | chr3.3:65757835-65757854 | None:intergenic | 35.0% | |
| AGTATTGCAGGAATGGTTAA+TGG | + | chr3.3:65758931-65758950 | MS.gene25982:CDS | 35.0% | |
| ATATATCACAACATGCAGAG+AGG | - | chr3.3:65758248-65758267 | None:intergenic | 35.0% | |
| ATCATCATGTCAAGAAGTAG+AGG | + | chr3.3:65758061-65758080 | MS.gene25982:CDS | 35.0% | |
| ATCTTGGATACACAAAAGCA+AGG | - | chr3.3:65757819-65757838 | None:intergenic | 35.0% | |
| ATGAATGAATTGGGAAAGTG+AGG | + | chr3.3:65757306-65757325 | MS.gene25982:intron | 35.0% | |
| ATGTGTAAAGCCACAATTAG+TGG | - | chr3.3:65758704-65758723 | None:intergenic | 35.0% | |
| CAAAGGAACTAACTCCATTA+TGG | + | chr3.3:65758669-65758688 | MS.gene25982:CDS | 35.0% | |
| CAAATGACTCATAGTAAGGA+TGG | + | chr3.3:65758131-65758150 | MS.gene25982:CDS | 35.0% | |
| CAATAGATAAGAGTTCTCAC+TGG | + | chr3.3:65757431-65757450 | MS.gene25982:intron | 35.0% | |
| GGACAAGTATCTTGATTATG+TGG | + | chr3.3:65758952-65758971 | MS.gene25982:CDS | 35.0% | |
| GTATAGTTCTTGTAGAGTTG+GGG | + | chr3.3:65757508-65757527 | MS.gene25982:intron | 35.0% | |
| GTATATGGTACCCCAAAAAA+AGG | - | chr3.3:65758293-65758312 | None:intergenic | 35.0% | |
| TACCGTTAAATTGAATCTGG+TGG | + | chr3.3:65757382-65757401 | MS.gene25982:intron | 35.0% | |
| TATCCAAGATCAAACCTTTG+AGG | + | chr3.3:65757829-65757848 | MS.gene25982:CDS | 35.0% | |
| TGAATGAATTGGGAAAGTGA+GGG | + | chr3.3:65757307-65757326 | MS.gene25982:intron | 35.0% | |
| TGAGTCATTTGTAGAGTTTC+AGG | - | chr3.3:65758122-65758141 | None:intergenic | 35.0% | |
| TTGAAGCATGAAATCCTCAA+AGG | - | chr3.3:65757846-65757865 | None:intergenic | 35.0% | |
| TTGAGGATTTCATGCTTCAA+AGG | + | chr3.3:65757846-65757865 | MS.gene25982:CDS | 35.0% | |
| ! | ATATGGTGCTGAAGTTTCAA+AGG | + | chr3.3:65758652-65758671 | MS.gene25982:CDS | 35.0% |
| ! | CTAACTCCATTATGGGTTTT+TGG | + | chr3.3:65758677-65758696 | MS.gene25982:CDS | 35.0% |
| ! | TCCCCAAAATTCATTTTCCT+CGG | - | chr3.3:65757545-65757564 | None:intergenic | 35.0% |
| ! | TCCGAGGAAAATGAATTTTG+GGG | + | chr3.3:65757541-65757560 | MS.gene25982:intron | 35.0% |
| ! | TTGACAAAGCATCACATGAT+TGG | + | chr3.3:65757014-65757033 | MS.gene25982:CDS | 35.0% |
| !! | CAACAAAGGTATCGTTATTG+CGG | - | chr3.3:65758204-65758223 | None:intergenic | 35.0% |
| !! | GCAAACTACTACATTTTTGG+CGG | + | chr3.3:65758815-65758834 | MS.gene25982:CDS | 35.0% |
| !! | TACTTAGGAAAGTACCTTCT+TGG | + | chr3.3:65758783-65758802 | MS.gene25982:CDS | 35.0% |
| ACATGATTGGAAGAACAGAC+TGG | + | chr3.3:65757027-65757046 | MS.gene25982:CDS | 40.0% | |
| ATCGGACTGTCGAAATACTT+AGG | + | chr3.3:65758768-65758787 | MS.gene25982:CDS | 40.0% | |
| ATTTCTTCAGTTCCATTCCC+TGG | + | chr3.3:65757694-65757713 | MS.gene25982:intron | 40.0% | |
| CTGATTGCCCGACAATAATA+TGG | - | chr3.3:65758989-65759008 | None:intergenic | 40.0% | |
| GAAAAGCAGATGATGTTGCA+AGG | - | chr3.3:65758001-65758020 | None:intergenic | 40.0% | |
| GAAAATAAAATGAAGGGGGG+TGG | + | chr3.3:65758457-65758476 | MS.gene25982:intron | 40.0% | |
| GGTTGTAGCAAACTTTAGGT+TGG | + | chr3.3:65758426-65758445 | MS.gene25982:intron | 40.0% | |
| TCTATGCCTCAAGCTTCAAT+CGG | + | chr3.3:65758750-65758769 | MS.gene25982:CDS | 40.0% | |
| TGCATTAGCAACAATCACCA+GGG | - | chr3.3:65757714-65757733 | None:intergenic | 40.0% | |
| TTGGATACACAAAAGCAAGG+AGG | - | chr3.3:65757816-65757835 | None:intergenic | 40.0% | |
| TTTGCCAAAATGCACCAAGA+AGG | - | chr3.3:65758800-65758819 | None:intergenic | 40.0% | |
| ! | TAAAACCTCTGTTGGACTAG+AGG | + | chr3.3:65757920-65757939 | MS.gene25982:CDS | 40.0% |
| ! | TCTAGTCCAACAGAGGTTTT+AGG | - | chr3.3:65757921-65757940 | None:intergenic | 40.0% |
| !! | AGTACCTTCTTGGTGCATTT+TGG | + | chr3.3:65758793-65758812 | MS.gene25982:CDS | 40.0% |
| !! | GCAACATCATCTGCTTTTCA+TGG | + | chr3.3:65758002-65758021 | MS.gene25982:CDS | 40.0% |
| !!! | AACTACTACATTTTTGGCGG+CGG | + | chr3.3:65758818-65758837 | MS.gene25982:CDS | 40.0% |
| !!! | AGATGCGTGCACCTTTTTTT+GGG | + | chr3.3:65758279-65758298 | MS.gene25982:intron | 40.0% |
| !!! | TGGAAGTGAAGTTTTGAAGC+TGG | + | chr3.3:65758151-65758170 | MS.gene25982:CDS | 40.0% |
| AAGCAGGGCTAATTGGTTGA+GGG | + | chr3.3:65757893-65757912 | MS.gene25982:CDS | 45.0% | |
| ACATTAACAGCCAGGTACAG+AGG | - | chr3.3:65758629-65758648 | None:intergenic | 45.0% | |
| AGTGGCCCAAAAACCCATAA+TGG | - | chr3.3:65758686-65758705 | None:intergenic | 45.0% | |
| ATACGAGAATGGCACGTTGT+GGG | - | chr3.3:65757958-65757977 | None:intergenic | 45.0% | |
| ATTCAGGAAGCAGGGCTAAT+TGG | + | chr3.3:65757886-65757905 | MS.gene25982:CDS | 45.0% | |
| CTGCATTAGCAACAATCACC+AGG | - | chr3.3:65757715-65757734 | None:intergenic | 45.0% | |
| CTGGTGATTGTTGCTAATGC+AGG | + | chr3.3:65757713-65757732 | MS.gene25982:intron | 45.0% | |
| GCTTCAGATGCATACGAGAA+TGG | - | chr3.3:65757969-65757988 | None:intergenic | 45.0% | |
| GGTAAAATTGTGGGAGTCGT+CGG | - | chr3.3:65758101-65758120 | None:intergenic | 45.0% | |
| TAGCAACAATCACCAGGGAA+TGG | - | chr3.3:65757709-65757728 | None:intergenic | 45.0% | |
| TATCGTTATTGCGGCATCCA+GGG | - | chr3.3:65758195-65758214 | None:intergenic | 45.0% | |
| TTGGGGATTCGTATTATCCG+AGG | + | chr3.3:65757525-65757544 | MS.gene25982:intron | 45.0% | |
| ! | ATTGTCCCATTTTCTGTCCC+TGG | + | chr3.3:65758175-65758194 | MS.gene25982:CDS | 45.0% |
| ! | CGTCATCAAACATTTGCTGC+AGG | - | chr3.3:65757599-65757618 | None:intergenic | 45.0% |
| ! | TTCTCGTATGCATCTGAAGC+AGG | + | chr3.3:65757969-65757988 | MS.gene25982:CDS | 45.0% |
| !! | GGTTTTTGGGCCACTAATTG+TGG | + | chr3.3:65758691-65758710 | MS.gene25982:CDS | 45.0% |
| !!! | ACTACTACATTTTTGGCGGC+GGG | + | chr3.3:65758819-65758838 | MS.gene25982:CDS | 45.0% |
| !!! | GAGATGCGTGCACCTTTTTT+TGG | + | chr3.3:65758278-65758297 | MS.gene25982:intron | 45.0% |
| !!! | GATGCGTGCACCTTTTTTTG+GGG | + | chr3.3:65758280-65758299 | MS.gene25982:intron | 45.0% |
| ACTCTCCTCTAGTCCAACAG+AGG | - | chr3.3:65757928-65757947 | None:intergenic | 50.0% | |
| CATACGAGAATGGCACGTTG+TGG | - | chr3.3:65757959-65757978 | None:intergenic | 50.0% | |
| CATAGAGTGCACACAGACCA+CGG | - | chr3.3:65758736-65758755 | None:intergenic | 50.0% | |
| GAAGCAGGGCTAATTGGTTG+AGG | + | chr3.3:65757892-65757911 | MS.gene25982:CDS | 50.0% | |
| GACAGTCCGATTGAAGCTTG+AGG | - | chr3.3:65758759-65758778 | None:intergenic | 50.0% | |
| GCAGGTAGTGTTCACAAGCA+CGG | - | chr3.3:65757581-65757600 | None:intergenic | 50.0% | |
| GGCATCCAGGGACAGAAAAT+GGG | - | chr3.3:65758183-65758202 | None:intergenic | 50.0% | |
| GTACAGAGGAACACTGCAGA+TGG | - | chr3.3:65758615-65758634 | None:intergenic | 50.0% | |
| GTATCGTTATTGCGGCATCC+AGG | - | chr3.3:65758196-65758215 | None:intergenic | 50.0% | |
| TGGGAAAGTGAGGGAACGAA+GGG | + | chr3.3:65757316-65757335 | MS.gene25982:intron | 50.0% | |
| TTGGGAAAGTGAGGGAACGA+AGG | + | chr3.3:65757315-65757334 | MS.gene25982:intron | 50.0% | |
| ! | AGGGCACCTAAAACCTCTGT+TGG | + | chr3.3:65757912-65757931 | MS.gene25982:CDS | 50.0% |
| ! | CTGTTGGACTAGAGGAGAGT+GGG | + | chr3.3:65757928-65757947 | MS.gene25982:CDS | 50.0% |
| ! | TCTGTTGGACTAGAGGAGAG+TGG | + | chr3.3:65757927-65757946 | MS.gene25982:CDS | 50.0% |
| ! | TGTTGGACTAGAGGAGAGTG+GGG | + | chr3.3:65757929-65757948 | MS.gene25982:CDS | 50.0% |
| AAAGCAAGGAGGCCCTACAC+TGG | - | chr3.3:65757805-65757824 | None:intergenic | 55.0% | |
| AGGGAACGAAGGGGGTTATG+GGG | + | chr3.3:65757326-65757345 | MS.gene25982:intron | 55.0% | |
| CGGCATCCAGGGACAGAAAA+TGG | - | chr3.3:65758184-65758203 | None:intergenic | 55.0% | |
| CTGCAGTGTTCCTCTGTACC+TGG | + | chr3.3:65758616-65758635 | MS.gene25982:intron | 55.0% | |
| GAGGGAACGAAGGGGGTTAT+GGG | + | chr3.3:65757325-65757344 | MS.gene25982:intron | 55.0% | |
| GGAAAGTGAGGGAACGAAGG+GGG | + | chr3.3:65757318-65757337 | MS.gene25982:intron | 55.0% | |
| GGGAAAGTGAGGGAACGAAG+GGG | + | chr3.3:65757317-65757336 | MS.gene25982:intron | 55.0% | |
| TGAGGGAACGAAGGGGGTTA+TGG | + | chr3.3:65757324-65757343 | MS.gene25982:intron | 55.0% | |
| GAACGAAGGGGGTTATGGGG+TGG | + | chr3.3:65757329-65757348 | MS.gene25982:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 65756983 | 65759036 | 65756983 | ID=MS.gene25982 |
| chr3.3 | mRNA | 65756983 | 65759036 | 65756983 | ID=MS.gene25982.t1;Parent=MS.gene25982 |
| chr3.3 | exon | 65756983 | 65757081 | 65756983 | ID=MS.gene25982.t1.exon1;Parent=MS.gene25982.t1 |
| chr3.3 | CDS | 65756983 | 65757081 | 65756983 | ID=cds.MS.gene25982.t1;Parent=MS.gene25982.t1 |
| chr3.3 | exon | 65757786 | 65758228 | 65757786 | ID=MS.gene25982.t1.exon2;Parent=MS.gene25982.t1 |
| chr3.3 | CDS | 65757786 | 65758228 | 65757786 | ID=cds.MS.gene25982.t1;Parent=MS.gene25982.t1 |
| chr3.3 | exon | 65758622 | 65759036 | 65758622 | ID=MS.gene25982.t1.exon3;Parent=MS.gene25982.t1 |
| chr3.3 | CDS | 65758622 | 65759036 | 65758622 | ID=cds.MS.gene25982.t1;Parent=MS.gene25982.t1 |
| Gene Sequence |
| Protein sequence |
