AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene27272


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27272.t1 MTR_1g023160 97.003 367 11 0 1 367 130 496 0.0 719
MS.gene27272.t1 MTR_2g019790 36.491 285 154 5 7 290 203 461 1.43e-52 184
MS.gene27272.t1 MTR_1g073010 40.845 213 104 5 73 271 250 454 1.83e-39 147
MS.gene27272.t1 MTR_2g030370 32.117 137 74 2 143 260 27 163 4.50e-16 79.3
MS.gene27272.t1 MTR_2g030335 34.653 101 57 1 143 234 27 127 1.55e-12 66.6
MS.gene27272.t1 MTR_3g094880 37.069 116 59 3 141 254 65 168 8.53e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27272.t1 AT5G18570 50.296 169 76 2 120 288 358 518 6.92e-48 172
MS.gene27272.t1 AT1G07615 39.224 232 115 4 73 286 225 448 1.10e-38 144
MS.gene27272.t1 AT1G30580 33.088 136 72 3 143 259 27 162 5.95e-16 79.0
MS.gene27272.t1 AT1G56050 36.111 108 59 3 144 241 57 164 1.21e-12 69.3
MS.gene27272.t1 AT4G39520 36.842 114 58 3 143 254 68 169 1.67e-11 65.5

Find 98 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGCATTAATGTTGTAAA+TGG 0.168245 1.1:+1505721 None:intergenic
CCACGACCTCACTCTGTTAT+TGG 0.196696 1.1:-1504104 MS.gene27272:CDS
CCAAATCTTGGACGCCTTAA+TGG 0.205270 1.1:-1505703 MS.gene27272:CDS
GTTCGTATTCCTGTTCCTTT+AGG 0.240911 1.1:-1509204 MS.gene27272:intron
ACAGTTCTGTAGTCATTTAC+AGG 0.252618 1.1:+1505420 None:intergenic
AGGAGATAAGGGCCGCTTTA+AGG 0.264646 1.1:-1503880 MS.gene27272:CDS
TAGAAATGCCACGGCATAAT+AGG 0.302506 1.1:-1506898 MS.gene27272:CDS
AAATGGATAATCAGCAATAT+CGG 0.307095 1.1:+1505738 None:intergenic
CCATTAAGGCGTCCAAGATT+TGG 0.315935 1.1:+1505703 None:intergenic
ACTCAAGAAATTATGAGAAT+TGG 0.328796 1.1:-1504227 MS.gene27272:CDS
GAAACTTCAGAGCTTGGTTT+TGG 0.342930 1.1:+1504182 None:intergenic
AGCGTTGATTTCCCAGCATT+TGG 0.349531 1.1:+1505787 None:intergenic
CCAAGTTGGGATCACCATTA+AGG 0.355460 1.1:+1505689 None:intergenic
ACAACATTAATGCCAAATCT+TGG 0.357348 1.1:-1505715 MS.gene27272:CDS
TGCTGGGAAATCAACGCTTC+TGG 0.366085 1.1:-1505782 MS.gene27272:CDS
TGAAGGAAAAGATACGTTAT+TGG 0.376575 1.1:-1509328 MS.gene27272:CDS
AAAACCAAGCTCTGAAGTTT+CGG 0.377456 1.1:-1504180 MS.gene27272:CDS
CATGGTTAGCGAGATGTTAA+AGG 0.379680 1.1:-1503900 MS.gene27272:CDS
GATTTGCCTGGTCTTATAGA+AGG 0.401210 1.1:-1505631 MS.gene27272:CDS
TGGAGTTTCATAGTAAGAAT+AGG 0.401600 1.1:-1509308 MS.gene27272:CDS
CACAGTTGTGAAAAGCAAAC+GGG 0.420716 1.1:-1507335 MS.gene27272:CDS
TACATCCCTGCTCCCAAGTT+GGG 0.426129 1.1:+1505676 None:intergenic
ACTAGAAACCAACGGTTCCT+TGG 0.430294 1.1:+1503844 None:intergenic
TATGGTCGTTCAAGGTAATC+AGG 0.432822 1.1:+1504602 None:intergenic
TTGTAGGGACTTCCAAATGC+TGG 0.444567 1.1:-1505799 MS.gene27272:intron
CCTTAATGGTGATCCCAACT+TGG 0.455439 1.1:-1505689 MS.gene27272:CDS
CGAGATGTTAAAGGAGATAA+GGG 0.460007 1.1:-1503891 MS.gene27272:CDS
GCAAACAAACCTAAAGGAAC+AGG 0.461494 1.1:+1509195 None:intergenic
GGTGATCCCAACTTGGGAGC+AGG 0.464311 1.1:-1505682 MS.gene27272:CDS
TCTTATAGAAGGTGCTCACT+TGG 0.464858 1.1:-1505620 MS.gene27272:CDS
CAACAATGTATGGTCGTTCA+AGG 0.466565 1.1:+1504594 None:intergenic
TGAGCCGAAACTTCAGAGCT+TGG 0.472376 1.1:+1504176 None:intergenic
GCTACATTGGCAGATTTGCC+TGG 0.472873 1.1:-1505643 MS.gene27272:CDS
TCTAAGAAGGACCCGGCTAC+TGG 0.473999 1.1:-1505472 MS.gene27272:CDS
ATCGGGTTTCGCAAGCGTAA+TGG 0.482247 1.1:+1505756 None:intergenic
GCACAGTTGTGAAAAGCAAA+CGG 0.484997 1.1:-1507336 MS.gene27272:CDS
GATGAGAGATGACTCGGATA+AGG 0.486698 1.1:-1506846 MS.gene27272:intron
AACAACATGGACCAGTAGCC+GGG 0.486773 1.1:+1505461 None:intergenic
TTATTCAAAACAACAATGTA+TGG 0.487346 1.1:+1504584 None:intergenic
GCGAGATGTTAAAGGAGATA+AGG 0.492991 1.1:-1503892 MS.gene27272:CDS
ATAATTTCTTGAGTCAATGT+TGG 0.494238 1.1:+1504236 None:intergenic
CGCAACAAGAACTTCATCAC+CGG 0.498936 1.1:+1507285 None:intergenic
ACCTGGGGAGGAAGTTAAGT+TGG 0.499431 1.1:-1506257 MS.gene27272:CDS
TTTACTTCTTACTTGAGGAA+TGG 0.500469 1.1:-1509243 MS.gene27272:CDS
AAGGCAGTGCGTTGATTCCA+AGG 0.513530 1.1:-1503861 MS.gene27272:CDS
CGTTGATTCCAAGGAACCGT+TGG 0.514117 1.1:-1503852 MS.gene27272:CDS
GTGATTATTTATGCTGATGA+AGG 0.516366 1.1:-1509345 MS.gene27272:CDS
GTTGCGAGGGGTGGACAAGG+AGG 0.518059 1.1:-1507268 MS.gene27272:CDS
TTGCGAGGGGTGGACAAGGA+GGG 0.520295 1.1:-1507267 MS.gene27272:CDS
AATGGATAATCAGCAATATC+GGG 0.521649 1.1:+1505739 None:intergenic
ATACTTCCAATGGGTGGTCA+TGG 0.522317 1.1:-1509375 None:intergenic
GTGATGAAGTTCTTGTTGCG+AGG 0.528670 1.1:-1507282 MS.gene27272:CDS
CAGTTCTGTAGTCATTTACA+GGG 0.534642 1.1:+1505421 None:intergenic
GTGATCCCAACTTGGGAGCA+GGG 0.543301 1.1:-1505681 MS.gene27272:CDS
TTTGGTTCATGGTCAACCTG+GGG 0.544159 1.1:-1506272 MS.gene27272:CDS
ATACATCCCTGCTCCCAAGT+TGG 0.545507 1.1:+1505675 None:intergenic
TGTAGGGACTTCCAAATGCT+GGG 0.545787 1.1:-1505798 MS.gene27272:intron
TTATTGCAGAAAGCGTATCA+TGG 0.546103 1.1:-1503918 MS.gene27272:intron
CAACAACATGGACCAGTAGC+CGG 0.547834 1.1:+1505460 None:intergenic
TGCGAGGGGTGGACAAGGAG+GGG 0.550722 1.1:-1507266 MS.gene27272:intron
CCAATAACAGAGTGAGGTCG+TGG 0.551059 1.1:+1504104 None:intergenic
TCCAACTTAACTTCCTCCCC+AGG 0.554908 1.1:+1506256 None:intergenic
CTTGTTGCGAGGGGTGGACA+AGG 0.554974 1.1:-1507271 MS.gene27272:CDS
TGATGAAGTTCTTGTTGCGA+GGG 0.555435 1.1:-1507281 MS.gene27272:CDS
CTTATAGAAGGTGCTCACTT+GGG 0.556651 1.1:-1505619 MS.gene27272:CDS
CTTAATGGTGATCCCAACTT+GGG 0.563698 1.1:-1505688 MS.gene27272:CDS
CAGTAGATGCGTCAACAACA+TGG 0.566647 1.1:+1505448 None:intergenic
TCACCACCATGACCACCCAT+TGG 0.575301 1.1:+1509369 None:intergenic
GGAACAGGAATACGAACAGT+AGG 0.577522 1.1:+1509210 None:intergenic
CTACGAGTTGTAGCCGACGT+TGG 0.577677 1.1:-1506226 MS.gene27272:CDS
GTATTCGTCTGAAGCTACAT+TGG 0.579587 1.1:-1505656 MS.gene27272:CDS
ATTATGAGAATTGGCAGCGA+TGG 0.582383 1.1:-1504218 MS.gene27272:CDS
GGTTCATGGTCAACCTGGGG+AGG 0.582643 1.1:-1506269 MS.gene27272:CDS
GACTGAAGAAAGTGACCCAA+AGG 0.583497 1.1:-1504147 MS.gene27272:CDS
TGAGGCATCTAAGAAGGACC+CGG 0.584490 1.1:-1505479 MS.gene27272:CDS
GGTGGTAATGTTGATGCTGT+TGG 0.588083 1.1:-1509270 MS.gene27272:CDS
GAAGTTCTTGTTGCGAGGGG+TGG 0.596690 1.1:-1507277 MS.gene27272:CDS
GGAAACTACATACCTCTGGC+AGG 0.603249 1.1:+1504555 None:intergenic
AGAAGGTGCTCACTTGGGAA+AGG 0.609931 1.1:-1505614 MS.gene27272:intron
TCTTTGATACTTCCAATGGG+TGG 0.614114 1.1:-1509381 None:intergenic
TTAGCTGATTTAGCACGACC+CGG 0.616899 1.1:-1507304 MS.gene27272:CDS
TTAGCTTGTTAGAAATGCCA+CGG 0.620564 1.1:-1506907 MS.gene27272:CDS
CTTCCAATGGGTGGTCATGG+TGG 0.633367 1.1:-1509372 None:intergenic
TGAGCACCTTCTATAAGACC+AGG 0.641306 1.1:+1505625 None:intergenic
ATCAACGCACTGCCTTAAAG+CGG 0.642286 1.1:+1503868 None:intergenic
TAACGTGATGAGAGATGACT+CGG 0.642615 1.1:-1506852 MS.gene27272:CDS
GCAACAAGAACTTCATCACC+GGG 0.643404 1.1:+1507286 None:intergenic
GAATAAGATTGACCTGCCAG+AGG 0.647898 1.1:-1504567 MS.gene27272:intron
AGGTTTAATGCGAAACGTGG+TGG 0.659737 1.1:-1509288 MS.gene27272:CDS
CAACGTCGGCTACAACTCGT+AGG 0.664807 1.1:+1506227 None:intergenic
CTAACTCCAATAACAGAGTG+AGG 0.666857 1.1:+1504098 None:intergenic
AATAGGTTTAATGCGAAACG+TGG 0.677121 1.1:-1509291 MS.gene27272:CDS
ACTTACAATTAAACCAACGT+CGG 0.682305 1.1:+1506213 None:intergenic
TGTGGCACACTAGAAACCAA+CGG 0.704503 1.1:+1503836 None:intergenic
GATGAAGTTCTTGTTGCGAG+GGG 0.705915 1.1:-1507280 MS.gene27272:CDS
ACAGTTGTGAAAAGCAAACG+GGG 0.706082 1.1:-1507334 MS.gene27272:CDS
CCCAAAGGAAAAGAAACTTG+AGG 0.715840 1.1:-1504132 MS.gene27272:CDS
ATAGGATGCAAATCTCACTG+TGG 0.804712 1.1:+1503818 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTATTTTTTATATT+TGG - chr1.1:1504580-1504599 MS.gene27272:CDS 0.0%
!!! AAACAATTTTATTGTTTTAA+AGG - chr1.1:1504344-1504363 MS.gene27272:intron 10.0%
!!! AACAATTTTATTGTTTTAAA+GGG - chr1.1:1504345-1504364 MS.gene27272:intron 10.0%
!!! ATTTTTTTTTTAATCTTTCA+GGG - chr1.1:1507679-1507698 MS.gene27272:intron 10.0%
!!! TTTAAAACAATAAAATTGTT+TGG + chr1.1:1504345-1504364 None:intergenic 10.0%
!! AAACTTGATTAAAAATTCAA+CGG + chr1.1:1508272-1508291 None:intergenic 15.0%
!! AAGAAGAAAACTTAAATAAT+TGG - chr1.1:1504273-1504292 MS.gene27272:intron 15.0%
!! AATAATATCATATAAGATGT+TGG + chr1.1:1504995-1505014 None:intergenic 15.0%
!! AGCCAAATAATATATTAATA+GGG + chr1.1:1504319-1504338 None:intergenic 15.0%
!! ATAAATAAATTCATACTCAT+TGG - chr1.1:1506115-1506134 MS.gene27272:intron 15.0%
!! ATTATGTTTGATTAATTGAT+TGG - chr1.1:1504756-1504775 MS.gene27272:intron 15.0%
!! TACCCTATTAATATATTATT+TGG - chr1.1:1504314-1504333 MS.gene27272:intron 15.0%
!! TAGCCAAATAATATATTAAT+AGG + chr1.1:1504320-1504339 None:intergenic 15.0%
!! TTGCTTCTTAAAAAAAATAA+TGG + chr1.1:1507908-1507927 None:intergenic 15.0%
!!! AAATCAAGTTTAGTTTTTTA+TGG + chr1.1:1505811-1505830 None:intergenic 15.0%
!!! AATCAAGTTTAGTTTTTTAT+GGG + chr1.1:1505810-1505829 None:intergenic 15.0%
!!! AATGTTGTTATGTTTTTATT+AGG - chr1.1:1504721-1504740 MS.gene27272:intron 15.0%
!!! AATTTCATTTTTTGATGTTA+TGG - chr1.1:1504027-1504046 MS.gene27272:intron 15.0%
!!! AATTTCCTATTATTTTGTAA+AGG - chr1.1:1508703-1508722 MS.gene27272:intron 15.0%
!!! ATGTTGTTATGTTTTTATTA+GGG - chr1.1:1504722-1504741 MS.gene27272:intron 15.0%
!!! ATTTCCTATTATTTTGTAAA+GGG - chr1.1:1508704-1508723 MS.gene27272:intron 15.0%
!!! ATTTTTTAACTTCATATCAA+TGG + chr1.1:1508199-1508218 None:intergenic 15.0%
!!! GATTTTTTTTTTAATCTTTC+AGG - chr1.1:1507678-1507697 MS.gene27272:intron 15.0%
!!! GTCTAAATCTTTTTTTAATA+TGG - chr1.1:1507250-1507269 MS.gene27272:intron 15.0%
!!! TGTTCATTAATTTTAATTTC+AGG - chr1.1:1508925-1508944 MS.gene27272:intron 15.0%
!!! TTATATTAGTTGACTTTTTT+TGG + chr1.1:1505269-1505288 None:intergenic 15.0%
!! AAACTCAAAATTATCATCAT+TGG + chr1.1:1507122-1507141 None:intergenic 20.0%
!! AGTTTATTATTGTGAATTAC+AGG - chr1.1:1505840-1505859 MS.gene27272:intron 20.0%
!! ATATTTAATAAGCAGCTATA+TGG + chr1.1:1507658-1507677 None:intergenic 20.0%
!! ATGCAATCTATAAGATTATT+CGG + chr1.1:1508098-1508117 None:intergenic 20.0%
!! CATATTACAAGATAGTAATA+CGG + chr1.1:1508880-1508899 None:intergenic 20.0%
!! TAAATTATCAGAGCTAATAA+AGG + chr1.1:1508334-1508353 None:intergenic 20.0%
!! TTAATATGGTGAACTAAAAT+TGG - chr1.1:1507264-1507283 MS.gene27272:intron 20.0%
!! TTATTCAAAACAACAATGTA+TGG + chr1.1:1508617-1508636 None:intergenic 20.0%
!! TTTATTCGTAAGTACAAAAA+TGG + chr1.1:1505101-1505120 None:intergenic 20.0%
!!! AAAAAATAATGGAGTCTATA+AGG + chr1.1:1507897-1507916 None:intergenic 20.0%
!!! AAAAATAATGGAGTCTATAA+GGG + chr1.1:1507896-1507915 None:intergenic 20.0%
!!! AAGATACATTTTAAAATGAC+AGG + chr1.1:1506778-1506797 None:intergenic 20.0%
!!! ATGATAATTTTGAGTTTTCT+GGG - chr1.1:1507125-1507144 MS.gene27272:intron 20.0%
!!! ATGTCTTTTCATATTTTAAC+TGG - chr1.1:1505413-1505432 MS.gene27272:CDS 20.0%
!!! ATTTCATATTCAGTTTTATC+AGG - chr1.1:1506632-1506651 MS.gene27272:intron 20.0%
!!! CTGTAACAATTTTAAAATAC+AGG + chr1.1:1506904-1506923 None:intergenic 20.0%
!!! CTGTATTTTAAAATTGTTAC+AGG - chr1.1:1506902-1506921 MS.gene27272:CDS 20.0%
!!! GTTTTATCTTACATTAAGAT+AGG + chr1.1:1506754-1506773 None:intergenic 20.0%
!!! TTAAGTTTTCTTCTTCTTTT+GGG + chr1.1:1504268-1504287 None:intergenic 20.0%
!!! TTAATTTTAATTTCAGGTTG+AGG - chr1.1:1508931-1508950 MS.gene27272:intron 20.0%
!!! TTTAAAATTGTTACAGGTTT+TGG - chr1.1:1506908-1506927 MS.gene27272:CDS 20.0%
!!! TTTAAGTTTTCTTCTTCTTT+TGG + chr1.1:1504269-1504288 None:intergenic 20.0%
!!! TTTAGATTCAAGTTTTTTCT+TGG - chr1.1:1507830-1507849 MS.gene27272:intron 20.0%
! AAAGTGAAATATCCCTTTAA+AGG + chr1.1:1508152-1508171 None:intergenic 25.0%
! AAATGGATAATCAGCAATAT+CGG + chr1.1:1507463-1507482 None:intergenic 25.0%
! AAATTTGCAAACAAACCTAA+AGG + chr1.1:1504012-1504031 None:intergenic 25.0%
! AACAAACAGAGAACTAAATA+AGG + chr1.1:1507030-1507049 None:intergenic 25.0%
! AATTTCACTTGGACAAAAAA+AGG + chr1.1:1507297-1507316 None:intergenic 25.0%
! ACAAAATTACTAACCATACA+TGG + chr1.1:1505646-1505665 None:intergenic 25.0%
! ACAACAATAATAACCAAGAT+AGG + chr1.1:1506232-1506251 None:intergenic 25.0%
! ACTCAAGAAATTATGAGAAT+TGG - chr1.1:1508971-1508990 MS.gene27272:intron 25.0%
! ATAATTTCTTGAGTCAATGT+TGG + chr1.1:1508965-1508984 None:intergenic 25.0%
! ATCTTCATAATAAATAACCG+TGG - chr1.1:1507060-1507079 MS.gene27272:intron 25.0%
! ATGTGGATAAGATTAGAATA+AGG - chr1.1:1505073-1505092 MS.gene27272:intron 25.0%
! ATTAAAAACTCCAAAACATG+AGG + chr1.1:1508524-1508543 None:intergenic 25.0%
! ATTGTGCATAAAGTAATTTG+TGG - chr1.1:1508478-1508497 MS.gene27272:intron 25.0%
! ATTTCACTTGGACAAAAAAA+GGG + chr1.1:1507296-1507315 None:intergenic 25.0%
! CACAATAATAAACTCAATGA+GGG + chr1.1:1505834-1505853 None:intergenic 25.0%
! CAGAAAATGAAATGAAAACA+AGG + chr1.1:1505736-1505755 None:intergenic 25.0%
! GAAATTTGGTTGAACAATTA+TGG + chr1.1:1506541-1506560 None:intergenic 25.0%
! GATATATAGACTGTCTAAAT+CGG + chr1.1:1504662-1504681 None:intergenic 25.0%
! GATTTACATTGTAATGTTAG+AGG - chr1.1:1504810-1504829 MS.gene27272:intron 25.0%
! GTAAGATAGAATTTAACTGA+TGG + chr1.1:1505615-1505634 None:intergenic 25.0%
! TAAATTCTATCTTACCACTT+TGG - chr1.1:1505620-1505639 MS.gene27272:CDS 25.0%
! TCACAATAATAAACTCAATG+AGG + chr1.1:1505835-1505854 None:intergenic 25.0%
! TGTTCAAAAACTATTGTTTC+TGG + chr1.1:1506679-1506698 None:intergenic 25.0%
! TTAAAAACTCCAAAACATGA+GGG + chr1.1:1508523-1508542 None:intergenic 25.0%
! TTACATTAAGATAGGAACAA+AGG + chr1.1:1506746-1506765 None:intergenic 25.0%
! TTATAAGTTCTTCCAATTAG+TGG - chr1.1:1504175-1504194 MS.gene27272:CDS 25.0%
! TTTGGCATTAATGTTGTAAA+TGG + chr1.1:1507480-1507499 None:intergenic 25.0%
!! ATGAAGTTAATCTTGTTGTA+GGG - chr1.1:1507384-1507403 MS.gene27272:intron 25.0%
!! GTTTAGTTTAGTGTCAATTA+TGG - chr1.1:1504397-1504416 MS.gene27272:intron 25.0%
!! TAAGTTTTCTTCTTCTTTTG+GGG + chr1.1:1504267-1504286 None:intergenic 25.0%
!! TGACAAATTAGCAAGTATTT+TGG + chr1.1:1506567-1506586 None:intergenic 25.0%
!!! AAGCTATTTTTGATAACTTG+TGG - chr1.1:1504104-1504123 MS.gene27272:CDS 25.0%
!!! AAGTATTTTGGACAGAAATT+TGG + chr1.1:1506555-1506574 None:intergenic 25.0%
!!! AAGTTTTTTCTTGGTTTAAC+AGG - chr1.1:1507839-1507858 MS.gene27272:intron 25.0%
!!! ACATAATAAGTACTGAAAAG+TGG + chr1.1:1505218-1505237 None:intergenic 25.0%
!!! AGTTTTAAAAACATTGGTCA+TGG - chr1.1:1505452-1505471 MS.gene27272:CDS 25.0%
!!! ATAATAAGTACTGAAAAGTG+GGG + chr1.1:1505216-1505235 None:intergenic 25.0%
!!! CAATGTTTTAAAAACTGAAC+TGG - chr1.1:1505298-1505317 MS.gene27272:intron 25.0%
!!! CATAATAAGTACTGAAAAGT+GGG + chr1.1:1505217-1505236 None:intergenic 25.0%
!!! GATGATAATTTTGAGTTTTC+TGG - chr1.1:1507124-1507143 MS.gene27272:intron 25.0%
!!! TTTTTGATAACTTGTGGTTT+TGG - chr1.1:1504110-1504129 MS.gene27272:CDS 25.0%
AAAAGACATTGTTCACGATT+CGG + chr1.1:1505402-1505421 None:intergenic 30.0%
AAGAACAAACAGGAAATTTG+TGG + chr1.1:1508380-1508399 None:intergenic 30.0%
AATCCAAAAGCAAAAGAAAG+AGG + chr1.1:1508411-1508430 None:intergenic 30.0%
AATGGATAATCAGCAATATC+GGG + chr1.1:1507462-1507481 None:intergenic 30.0%
AATTTGTGGCTATCAATAGA+TGG + chr1.1:1508366-1508385 None:intergenic 30.0%
ACAACATTAATGCCAAATCT+TGG - chr1.1:1507483-1507502 MS.gene27272:intron 30.0%
ACTTACAATTAAACCAACGT+CGG + chr1.1:1506988-1507007 None:intergenic 30.0%
AGTATAGCTTAGATGGTAAA+AGG - chr1.1:1505143-1505162 MS.gene27272:intron 30.0%
ATATACTCAAACTCAGATTG+AGG + chr1.1:1508678-1508697 None:intergenic 30.0%
ATCAACATTATCTTCTTTCC+TGG - chr1.1:1506184-1506203 MS.gene27272:intron 30.0%
ATTGAAGGATTGAATCAACA+AGG - chr1.1:1506465-1506484 MS.gene27272:intron 30.0%
CACAATCTTCACTAAAATCA+TGG + chr1.1:1507171-1507190 None:intergenic 30.0%
CAGCTATATGGTTTAAAAGA+TGG + chr1.1:1507646-1507665 None:intergenic 30.0%
CATTGTAATGTTAGAGGATT+TGG - chr1.1:1504816-1504835 MS.gene27272:intron 30.0%
GAAGCAATTTATTCACGAAA+TGG + chr1.1:1505677-1505696 None:intergenic 30.0%
GGAAAGAATAAAGAACAAAC+AGG + chr1.1:1508390-1508409 None:intergenic 30.0%
GTGATTATTTATGCTGATGA+AGG - chr1.1:1503853-1503872 MS.gene27272:CDS 30.0%
TAAGTTGTACAGATTCACAT+TGG - chr1.1:1506059-1506078 MS.gene27272:intron 30.0%
TACAAGATAGTAATACGGAA+GGG + chr1.1:1508875-1508894 None:intergenic 30.0%
TACCATCTAAGCTATACTTA+CGG + chr1.1:1505141-1505160 None:intergenic 30.0%
TATACTCAAACTCAGATTGA+GGG + chr1.1:1508677-1508696 None:intergenic 30.0%
TCTCTCAGTTCAATTAATGT+TGG - chr1.1:1506500-1506519 MS.gene27272:intron 30.0%
TGAAGGAAAAGATACGTTAT+TGG - chr1.1:1503870-1503889 MS.gene27272:CDS 30.0%
TGGAGTTTCATAGTAAGAAT+AGG - chr1.1:1503890-1503909 MS.gene27272:CDS 30.0%
TGTGAAATGAAATGCTATGA+AGG + chr1.1:1509181-1509200 None:intergenic 30.0%
TTACAAGATAGTAATACGGA+AGG + chr1.1:1508876-1508895 None:intergenic 30.0%
TTTACTTCTTACTTGAGGAA+TGG - chr1.1:1503955-1503974 MS.gene27272:intron 30.0%
TTTGAAAAGCAGTATAAGCA+TGG + chr1.1:1505337-1505356 None:intergenic 30.0%
! GATGAAGTTAATCTTGTTGT+AGG - chr1.1:1507383-1507402 MS.gene27272:intron 30.0%
! TCATTCTAATTCTGTTTTGC+AGG - chr1.1:1508556-1508575 MS.gene27272:intron 30.0%
! TTATCATTTCCCTCATGTTT+TGG - chr1.1:1508511-1508530 MS.gene27272:intron 30.0%
! TTTCCTCTTTCTTTTGCTTT+TGG - chr1.1:1508405-1508424 MS.gene27272:intron 30.0%
! TTTTTAATCTTTCAGGGTCT+TGG - chr1.1:1507685-1507704 MS.gene27272:intron 30.0%
!! AAAGGGATATTTCACTTTTG+AGG - chr1.1:1508154-1508173 MS.gene27272:intron 30.0%
!! GATTTTAGTGAAGATTGTGA+AGG - chr1.1:1507172-1507191 MS.gene27272:intron 30.0%
!! GTGTTTTTACTTCTTACTTG+AGG - chr1.1:1503950-1503969 MS.gene27272:intron 30.0%
!! TAATAAGTACTGAAAAGTGG+GGG + chr1.1:1505215-1505234 None:intergenic 30.0%
!! TCAAGTGTGTCACTTAATAT+GGG + chr1.1:1504862-1504881 None:intergenic 30.0%
!! TCCTATTATTTTGTAAAGGG+AGG - chr1.1:1508707-1508726 MS.gene27272:intron 30.0%
!!! ATTTTTTGAGGCATCTAAGA+AGG - chr1.1:1507713-1507732 MS.gene27272:intron 30.0%
!!! GACCAATGTTTTTAAAACTG+AGG + chr1.1:1505451-1505470 None:intergenic 30.0%
!!! GTTTTTGAGTTCATCATAGT+TGG - chr1.1:1504781-1504800 MS.gene27272:intron 30.0%
!!! TGCCTCAGTTTTAAAAACAT+TGG - chr1.1:1505446-1505465 MS.gene27272:CDS 30.0%
AACAGGTTTACTTGAAGTTG+TGG - chr1.1:1507856-1507875 MS.gene27272:intron 35.0%
AACCACAACTAATACTTTCC+AGG + chr1.1:1506205-1506224 None:intergenic 35.0%
AATAGGTTTAATGCGAAACG+TGG - chr1.1:1503907-1503926 MS.gene27272:CDS 35.0%
ACAGGTTTACTTGAAGTTGT+GGG - chr1.1:1507857-1507876 MS.gene27272:intron 35.0%
ACAGTTCTGTAGTCATTTAC+AGG + chr1.1:1507781-1507800 None:intergenic 35.0%
ACATGAGGGAAATGATAAGT+TGG + chr1.1:1508509-1508528 None:intergenic 35.0%
ACCATCTAAGCTATACTTAC+GGG + chr1.1:1505140-1505159 None:intergenic 35.0%
ACTTCATATCAATGGTTGAG+AGG + chr1.1:1508191-1508210 None:intergenic 35.0%
ATACATTTAGCCCCTGAAAT+GGG - chr1.1:1508774-1508793 MS.gene27272:intron 35.0%
ATCATAGTTCCAGAGAGATT+TGG + chr1.1:1506600-1506619 None:intergenic 35.0%
ATTAATTGAACTGAGAGAGC+AGG + chr1.1:1506498-1506517 None:intergenic 35.0%
CAGTTCTGTAGTCATTTACA+GGG + chr1.1:1507780-1507799 None:intergenic 35.0%
CATTGTACTCCATTCTATGT+TGG - chr1.1:1505048-1505067 MS.gene27272:intron 35.0%
CCATCATTAGAGACTTCATT+AGG - chr1.1:1506437-1506456 MS.gene27272:intron 35.0%
CCTAATGAAGTCTCTAATGA+TGG + chr1.1:1506440-1506459 None:intergenic 35.0%
CGAGATGTTAAAGGAGATAA+GGG - chr1.1:1509307-1509326 MS.gene27272:CDS 35.0%
CGGCAAACATTATGTATACA+TGG + chr1.1:1508252-1508271 None:intergenic 35.0%
CTAGTGTAAAGTAGATGTCA+CGG - chr1.1:1506710-1506729 MS.gene27272:intron 35.0%
CTTCATTAGGCATGTATTGA+AGG - chr1.1:1506450-1506469 MS.gene27272:intron 35.0%
GAATCTGTACAACTTACCTA+CGG + chr1.1:1506055-1506074 None:intergenic 35.0%
GCATTTCTAACAAGCTAATC+TGG + chr1.1:1506289-1506308 None:intergenic 35.0%
GCCTCCCTTTACAAAATAAT+AGG + chr1.1:1508711-1508730 None:intergenic 35.0%
GGTAATGTACTCTGTAACTA+AGG - chr1.1:1506136-1506155 MS.gene27272:intron 35.0%
TCCACATTTCCAACATAGAA+TGG + chr1.1:1505060-1505079 None:intergenic 35.0%
TCCATTCTATGTTGGAAATG+TGG - chr1.1:1505056-1505075 MS.gene27272:intron 35.0%
TTTGTCCAAGTGAAATTCGT+TGG - chr1.1:1507300-1507319 MS.gene27272:CDS 35.0%
! ATGGCTCTGTTTGGATATAT+AGG - chr1.1:1504046-1504065 MS.gene27272:intron 35.0%
! CCTCAAGTTTCTTTTCCTTT+GGG + chr1.1:1509069-1509088 None:intergenic 35.0%
! GCTTTTCAAATGCTAGAATC+CGG - chr1.1:1505347-1505366 MS.gene27272:intron 35.0%
! GGGAATTTGGTTCCTTTAAA+GGG - chr1.1:1508137-1508156 MS.gene27272:intron 35.0%
! TACTTTTCATAGTACCCAGT+CGG - chr1.1:1509233-1509252 MS.gene27272:CDS 35.0%
! TATTTCTGTCCAAATCTCTC+TGG - chr1.1:1506588-1506607 MS.gene27272:intron 35.0%
! TCCTCAAGTTTCTTTTCCTT+TGG + chr1.1:1509070-1509089 None:intergenic 35.0%
! TGGCTCTGTTTGGATATATA+GGG - chr1.1:1504047-1504066 MS.gene27272:intron 35.0%
! TTATTGCAGAAAGCGTATCA+TGG - chr1.1:1509280-1509299 MS.gene27272:CDS 35.0%
! TTTAAGACTAATCTAGCCGT+AGG - chr1.1:1506036-1506055 MS.gene27272:intron 35.0%
! TTTGATGTTATGGCTCTGTT+TGG - chr1.1:1504037-1504056 MS.gene27272:intron 35.0%
! TTTTAGTCGAATGCTTGGAA+GGG - chr1.1:1508290-1508309 MS.gene27272:intron 35.0%
!! AAAACCAAGCTCTGAAGTTT+CGG - chr1.1:1509018-1509037 MS.gene27272:intron 35.0%
!! ACGGCTAGATTAGTCTTAAA+TGG + chr1.1:1506036-1506055 None:intergenic 35.0%
!! GAATTGATGACAGTTTTGTC+CGG + chr1.1:1505369-1505388 None:intergenic 35.0%
!! GGTACTCGTTTGATTAGTTT+GGG + chr1.1:1508077-1508096 None:intergenic 35.0%
!! GTCAAGTGTGTCACTTAATA+TGG + chr1.1:1504863-1504882 None:intergenic 35.0%
!! TGTTGATACAGTAGTTCTGA+AGG + chr1.1:1506171-1506190 None:intergenic 35.0%
!! TTAGCTTGTTAGAAATGCCA+CGG - chr1.1:1506291-1506310 MS.gene27272:intron 35.0%
!! TTCCTGGAAAGTATTAGTTG+TGG - chr1.1:1506200-1506219 MS.gene27272:intron 35.0%
!! TTGGATTTTGAGTCAAAAGC+AGG - chr1.1:1508424-1508443 MS.gene27272:intron 35.0%
!! TTTTTAGTCGAATGCTTGGA+AGG - chr1.1:1508289-1508308 MS.gene27272:intron 35.0%
!!! CAAGTTTTTAGTCGAATGCT+TGG - chr1.1:1508285-1508304 MS.gene27272:intron 35.0%
!!! GTGTTGGTTTTTCTAGTCAT+GGG + chr1.1:1508035-1508054 None:intergenic 35.0%
!!! GTTTTTTTCCTATTATGCCG+TGG + chr1.1:1506311-1506330 None:intergenic 35.0%
!!! TACCTTTTGCTGTTCACTAT+TGG + chr1.1:1507948-1507967 None:intergenic 35.0%
!!! TGTGTTGGTTTTTCTAGTCA+TGG + chr1.1:1508036-1508055 None:intergenic 35.0%
!!! TGTTGGTTTTTCTAGTCATG+GGG + chr1.1:1508034-1508053 None:intergenic 35.0%
!!! TTGTTACAGGTTTTGGTTCA+TGG - chr1.1:1506915-1506934 MS.gene27272:intron 35.0%
AACCACTCATCAACATTCCA+CGG + chr1.1:1507080-1507099 None:intergenic 40.0%
ACAGTTGTGAAAAGCAAACG+GGG - chr1.1:1505864-1505883 MS.gene27272:intron 40.0%
ACTGAACTGGTGTGAACATT+AGG - chr1.1:1505311-1505330 MS.gene27272:intron 40.0%
AGTAGGAAACTACATACCTC+TGG + chr1.1:1508650-1508669 None:intergenic 40.0%
ATTATGAGAATTGGCAGCGA+TGG - chr1.1:1508980-1508999 MS.gene27272:intron 40.0%
CAACAATGTATGGTCGTTCA+AGG + chr1.1:1508607-1508626 None:intergenic 40.0%
CACAGTTGTGAAAAGCAAAC+GGG - chr1.1:1505863-1505882 MS.gene27272:intron 40.0%
CACCAATAGTGAACAGCAAA+AGG - chr1.1:1507943-1507962 MS.gene27272:intron 40.0%
CATACATTTAGCCCCTGAAA+TGG - chr1.1:1508773-1508792 MS.gene27272:intron 40.0%
CATGGTTAGCGAGATGTTAA+AGG - chr1.1:1509298-1509317 MS.gene27272:CDS 40.0%
CCCAAAGGAAAAGAAACTTG+AGG - chr1.1:1509066-1509085 MS.gene27272:intron 40.0%
CTAACTCCAATAACAGAGTG+AGG + chr1.1:1509103-1509122 None:intergenic 40.0%
CTTAATGGTGATCCCAACTT+GGG - chr1.1:1507510-1507529 MS.gene27272:intron 40.0%
CTTACTTGATTGCATCTCTC+TGG - chr1.1:1506411-1506430 MS.gene27272:intron 40.0%
GAAGATTGTGAAGGATAGTG+TGG - chr1.1:1507181-1507200 MS.gene27272:intron 40.0%
GCAAACAAACCTAAAGGAAC+AGG + chr1.1:1504006-1504025 None:intergenic 40.0%
GCACAGTTGTGAAAAGCAAA+CGG - chr1.1:1505862-1505881 MS.gene27272:intron 40.0%
GCGAGATGTTAAAGGAGATA+AGG - chr1.1:1509306-1509325 MS.gene27272:CDS 40.0%
GTGAAAGACTGCTTTGTAGA+AGG - chr1.1:1507334-1507353 MS.gene27272:CDS 40.0%
GTTCGTATTCCTGTTCCTTT+AGG - chr1.1:1503994-1504013 MS.gene27272:intron 40.0%
GTTGTACAGATTCACATTGG+TGG - chr1.1:1506062-1506081 MS.gene27272:intron 40.0%
GTTGTGGTTTACACCTATCT+TGG - chr1.1:1506216-1506235 MS.gene27272:intron 40.0%
TAACGTGATGAGAGATGACT+CGG - chr1.1:1506346-1506365 MS.gene27272:intron 40.0%
TACAGCCAACGAATTTCACT+TGG + chr1.1:1507308-1507327 None:intergenic 40.0%
TACTTGAAGTTGTGGGTGTT+TGG - chr1.1:1507864-1507883 MS.gene27272:intron 40.0%
TAGAAATGCCACGGCATAAT+AGG - chr1.1:1506300-1506319 MS.gene27272:intron 40.0%
TAGCTTAGATGGTAAAAGGC+TGG - chr1.1:1505147-1505166 MS.gene27272:intron 40.0%
TATGGTCGTTCAAGGTAATC+AGG + chr1.1:1508599-1508618 None:intergenic 40.0%
TCCCGTAAGTATAGCTTAGA+TGG - chr1.1:1505136-1505155 MS.gene27272:intron 40.0%
TGATGAAGTTCTTGTTGCGA+GGG - chr1.1:1505917-1505936 MS.gene27272:intron 40.0%
TGCTTGGAAGGGAGTTTAAT+TGG - chr1.1:1508301-1508320 MS.gene27272:intron 40.0%
TGGAGGGACATTTGATATGT+TGG - chr1.1:1505167-1505186 MS.gene27272:intron 40.0%
TTAGATGGTAAAAGGCTGGA+GGG - chr1.1:1505151-1505170 MS.gene27272:intron 40.0%
TTGAGCTTATCTACTGACAG+CGG + chr1.1:1504634-1504653 None:intergenic 40.0%
! CGGTACTCGTTTGATTAGTT+TGG + chr1.1:1508078-1508097 None:intergenic 40.0%
! GAAACTTCAGAGCTTGGTTT+TGG + chr1.1:1509019-1509038 None:intergenic 40.0%
! GGGGAATTTGGTTCCTTTAA+AGG - chr1.1:1508136-1508155 MS.gene27272:intron 40.0%
! GTATTCGTCTGAAGCTACAT+TGG - chr1.1:1507542-1507561 MS.gene27272:intron 40.0%
! GTTTCTACATCTAGAACCCA+AGG - chr1.1:1508804-1508823 MS.gene27272:intron 40.0%
! TGAACAGCAAAAGGTATGCT+AGG - chr1.1:1507952-1507971 MS.gene27272:intron 40.0%
!! AAATTTTGACCTAAGCCGAC+TGG + chr1.1:1509251-1509270 None:intergenic 40.0%
!! AATTTTGACCTAAGCCGACT+GGG + chr1.1:1509250-1509269 None:intergenic 40.0%
!! CTAGTGTTGCTTCTATGTGA+AGG - chr1.1:1504696-1504715 MS.gene27272:intron 40.0%
!! CTTATAGAAGGTGCTCACTT+GGG - chr1.1:1507579-1507598 MS.gene27272:intron 40.0%
!! CTTCCAATTAGTGGTGTTAC+AGG - chr1.1:1504184-1504203 MS.gene27272:CDS 40.0%
!! GATGTGTTCTAAAGCATGAG+TGG - chr1.1:1507205-1507224 MS.gene27272:intron 40.0%
!! GATTTGCCTGGTCTTATAGA+AGG - chr1.1:1507567-1507586 MS.gene27272:intron 40.0%
!! GTGTGTCACTTAATATGGGA+CGG + chr1.1:1504858-1504877 None:intergenic 40.0%
!! TCTTATAGAAGGTGCTCACT+TGG - chr1.1:1507578-1507597 MS.gene27272:intron 40.0%
!!! GTCTTGGTCGCAATTTTTTG+AGG - chr1.1:1507701-1507720 MS.gene27272:intron 40.0%
!!! GTTGGTTTTTCTAGTCATGG+GGG + chr1.1:1508033-1508052 None:intergenic 40.0%
!!! TTGGGATTTTTTGTGCGTTG+AGG + chr1.1:1508059-1508078 None:intergenic 40.0%
!!! TTTTGGTTCATGGTCAACCT+GGG - chr1.1:1506925-1506944 MS.gene27272:intron 40.0%
AAACAGAGCCTCCCATTTCA+GGG + chr1.1:1508788-1508807 None:intergenic 45.0%
AAGCTCGCACAATTTCTACG+AGG + chr1.1:1504609-1504628 None:intergenic 45.0%
ACTAGAAACCAACGGTTCCT+TGG + chr1.1:1509357-1509376 None:intergenic 45.0%
AGCTCGCACAATTTCTACGA+GGG + chr1.1:1504608-1504627 None:intergenic 45.0%
AGGTGCTTATGTCAGTAGAC+AGG - chr1.1:1504204-1504223 MS.gene27272:CDS 45.0%
AGGTTTAATGCGAAACGTGG+TGG - chr1.1:1503910-1503929 MS.gene27272:CDS 45.0%
ATCAACGCACTGCCTTAAAG+CGG + chr1.1:1509333-1509352 None:intergenic 45.0%
ATCATTGCGGAGTCTAGTGA+GGG - chr1.1:1508749-1508768 MS.gene27272:intron 45.0%
ATGGTAAAGTAGACGCCATG+TGG + chr1.1:1508838-1508857 None:intergenic 45.0%
CAGTAGATGCGTCAACAACA+TGG + chr1.1:1507753-1507772 None:intergenic 45.0%
CCAAATCTTGGACGCCTTAA+TGG - chr1.1:1507495-1507514 MS.gene27272:intron 45.0%
CCTTAATGGTGATCCCAACT+TGG - chr1.1:1507509-1507528 MS.gene27272:intron 45.0%
CGCAACAAGAACTTCATCAC+CGG + chr1.1:1505916-1505935 None:intergenic 45.0%
CTAACCATACATGGCCAAAG+TGG + chr1.1:1505637-1505656 None:intergenic 45.0%
CTCAGATTGAGGGTAGTAGT+AGG + chr1.1:1508667-1508686 None:intergenic 45.0%
CTTACCACTTTGGCCATGTA+TGG - chr1.1:1505630-1505649 MS.gene27272:CDS 45.0%
CTTAGATGGTAAAAGGCTGG+AGG - chr1.1:1505150-1505169 MS.gene27272:intron 45.0%
GAATAAGATTGACCTGCCAG+AGG - chr1.1:1508631-1508650 MS.gene27272:intron 45.0%
GACTGAAGAAAGTGACCCAA+AGG - chr1.1:1509051-1509070 MS.gene27272:intron 45.0%
GATGAAGTTCTTGTTGCGAG+GGG - chr1.1:1505918-1505937 MS.gene27272:intron 45.0%
GCAACAAGAACTTCATCACC+GGG + chr1.1:1505915-1505934 None:intergenic 45.0%
GCACCTGTAACACCACTAAT+TGG + chr1.1:1504190-1504209 None:intergenic 45.0%
GGAACAGGAATACGAACAGT+AGG + chr1.1:1503991-1504010 None:intergenic 45.0%
GGTGCTTATGTCAGTAGACA+GGG - chr1.1:1504205-1504224 MS.gene27272:CDS 45.0%
GTCACTTAATATGGGACGGA+GGG + chr1.1:1504854-1504873 None:intergenic 45.0%
GTGATGAAGTTCTTGTTGCG+AGG - chr1.1:1505916-1505935 MS.gene27272:intron 45.0%
GTGCTTATGTCAGTAGACAG+GGG - chr1.1:1504206-1504225 MS.gene27272:CDS 45.0%
TAATACGGAAGGGTGAGCTT+TGG + chr1.1:1508865-1508884 None:intergenic 45.0%
TCACTAGACTCCGCAATGAT+GGG + chr1.1:1508749-1508768 None:intergenic 45.0%
TGAGCACCTTCTATAAGACC+AGG + chr1.1:1507576-1507595 None:intergenic 45.0%
TGTAGGGACTTCCAAATGCT+GGG - chr1.1:1507400-1507419 MS.gene27272:intron 45.0%
TGTGGCACACTAGAAACCAA+CGG + chr1.1:1509365-1509384 None:intergenic 45.0%
TTGTAGGGACTTCCAAATGC+TGG - chr1.1:1507399-1507418 MS.gene27272:intron 45.0%
! AACCGTGGAATGTTGATGAG+TGG - chr1.1:1507075-1507094 MS.gene27272:intron 45.0%
! CCAAGTTGGGATCACCATTA+AGG + chr1.1:1507512-1507531 None:intergenic 45.0%
! CCATTAAGGCGTCCAAGATT+TGG + chr1.1:1507498-1507517 None:intergenic 45.0%
! GATGAGAGATGACTCGGATA+AGG - chr1.1:1506352-1506371 MS.gene27272:intron 45.0%
! GGTGGTAATGTTGATGCTGT+TGG - chr1.1:1503928-1503947 MS.gene27272:intron 45.0%
! TGTCACTTAATATGGGACGG+AGG + chr1.1:1504855-1504874 None:intergenic 45.0%
! TTAGCTGATTTAGCACGACC+CGG - chr1.1:1505894-1505913 MS.gene27272:intron 45.0%
! TTTGGTTCATGGTCAACCTG+GGG - chr1.1:1506926-1506945 MS.gene27272:intron 45.0%
! TTTTGTGCGTTGAGGTGTGT+TGG + chr1.1:1508051-1508070 None:intergenic 45.0%
!! AGCGTTGATTTCCCAGCATT+TGG + chr1.1:1507414-1507433 None:intergenic 45.0%
!! GTCTGCATCGTTTTTGCAGT+GGG + chr1.1:1507994-1508013 None:intergenic 45.0%
!! TCTGCATCGTTTTTGCAGTG+GGG + chr1.1:1507993-1508012 None:intergenic 45.0%
!! TGTCTGCATCGTTTTTGCAG+TGG + chr1.1:1507995-1508014 None:intergenic 45.0%
!!! GTTTTGGTTCATGGTCAACC+TGG - chr1.1:1506924-1506943 MS.gene27272:intron 45.0%
AACAACATGGACCAGTAGCC+GGG + chr1.1:1507740-1507759 None:intergenic 50.0%
AACAGAGCCTCCCATTTCAG+GGG + chr1.1:1508787-1508806 None:intergenic 50.0%
ACCTGGGGAGGAAGTTAAGT+TGG - chr1.1:1506941-1506960 MS.gene27272:intron 50.0%
ATACATCCCTGCTCCCAAGT+TGG + chr1.1:1507526-1507545 None:intergenic 50.0%
ATCGGGTTTCGCAAGCGTAA+TGG + chr1.1:1507445-1507464 None:intergenic 50.0%
CAACAACATGGACCAGTAGC+CGG + chr1.1:1507741-1507760 None:intergenic 50.0%
CATCATTGCGGAGTCTAGTG+AGG - chr1.1:1508748-1508767 MS.gene27272:intron 50.0%
CATTTAGCCCCTGAAATGGG+AGG - chr1.1:1508777-1508796 MS.gene27272:intron 50.0%
CCAATAACAGAGTGAGGTCG+TGG + chr1.1:1509097-1509116 None:intergenic 50.0%
CCACGACCTCACTCTGTTAT+TGG - chr1.1:1509094-1509113 MS.gene27272:intron 50.0%
CTCACTAGACTCCGCAATGA+TGG + chr1.1:1508750-1508769 None:intergenic 50.0%
CTCGCACAATTTCTACGAGG+GGG + chr1.1:1504606-1504625 None:intergenic 50.0%
GAAACAGAGCCTCCCATTTC+AGG + chr1.1:1508789-1508808 None:intergenic 50.0%
GCTACATTGGCAGATTTGCC+TGG - chr1.1:1507555-1507574 MS.gene27272:intron 50.0%
GCTCGCACAATTTCTACGAG+GGG + chr1.1:1504607-1504626 None:intergenic 50.0%
GGAAACTACATACCTCTGGC+AGG + chr1.1:1508646-1508665 None:intergenic 50.0%
TACATCCCTGCTCCCAAGTT+GGG + chr1.1:1507525-1507544 None:intergenic 50.0%
TCCAACTTAACTTCCTCCCC+AGG + chr1.1:1506945-1506964 None:intergenic 50.0%
TGAGCCGAAACTTCAGAGCT+TGG + chr1.1:1509025-1509044 None:intergenic 50.0%
TGCTGGGAAATCAACGCTTC+TGG - chr1.1:1507416-1507435 MS.gene27272:intron 50.0%
! AGGAGATAAGGGCCGCTTTA+AGG - chr1.1:1509318-1509337 MS.gene27272:CDS 50.0%
! TCATAGTACCCAGTCGGCTT+AGG - chr1.1:1509239-1509258 MS.gene27272:CDS 50.0%
! TGAGGCATCTAAGAAGGACC+CGG - chr1.1:1507719-1507738 MS.gene27272:intron 50.0%
!! AAGGCAGTGCGTTGATTCCA+AGG - chr1.1:1509337-1509356 MS.gene27272:CDS 50.0%
!! AGAAGGTGCTCACTTGGGAA+AGG - chr1.1:1507584-1507603 MS.gene27272:intron 50.0%
!! CGTTGATTCCAAGGAACCGT+TGG - chr1.1:1509346-1509365 MS.gene27272:CDS 50.0%
AAAGGGAGGCTCAGTGCATG+AGG - chr1.1:1508721-1508740 MS.gene27272:intron 55.0%
AAAGTAGACGCCATGTGGCG+AGG + chr1.1:1508833-1508852 None:intergenic 55.0%
ATGTCAGTAGACAGGGGCGA+AGG - chr1.1:1504212-1504231 MS.gene27272:CDS 55.0%
CTACGAGTTGTAGCCGACGT+TGG - chr1.1:1506972-1506991 MS.gene27272:intron 55.0%
GAAGTTCTTGTTGCGAGGGG+TGG - chr1.1:1505921-1505940 MS.gene27272:intron 55.0%
GCATGAGGCTCCCATCATTG+CGG - chr1.1:1508736-1508755 MS.gene27272:intron 55.0%
GTGATCCCAACTTGGGAGCA+GGG - chr1.1:1507517-1507536 MS.gene27272:intron 55.0%
TCATGGCCATGGGGTAGCAA+TGG - chr1.1:1504238-1504257 MS.gene27272:CDS 55.0%
TCTAAGAAGGACCCGGCTAC+TGG - chr1.1:1507726-1507745 MS.gene27272:intron 55.0%
TTGCTACCCCATGGCCATGA+AGG + chr1.1:1504238-1504257 None:intergenic 55.0%
! AAGGGTGAGCTTTGGCGCAA+TGG + chr1.1:1508857-1508876 None:intergenic 55.0%
! CAACGTCGGCTACAACTCGT+AGG + chr1.1:1506974-1506993 None:intergenic 55.0%
CGAAGGCCTTCATGGCCATG+GGG - chr1.1:1504229-1504248 MS.gene27272:CDS 60.0%
CTTGTTGCGAGGGGTGGACA+AGG - chr1.1:1505927-1505946 MS.gene27272:intron 60.0%
GCGAAGGCCTTCATGGCCAT+GGG - chr1.1:1504228-1504247 MS.gene27272:CDS 60.0%
GGGTAGCCATTGCTACCCCA+TGG + chr1.1:1504247-1504266 None:intergenic 60.0%
GGTGATCCCAACTTGGGAGC+AGG - chr1.1:1507516-1507535 MS.gene27272:intron 60.0%
GGTTCATGGTCAACCTGGGG+AGG - chr1.1:1506929-1506948 MS.gene27272:intron 60.0%
TTGCGAGGGGTGGACAAGGA+GGG - chr1.1:1505931-1505950 MS.gene27272:intron 60.0%
CCATGTGGCGAGGTGGCCTT+GGG + chr1.1:1508823-1508842 None:intergenic 65.0%
GACAGGGGCGAAGGCCTTCA+TGG - chr1.1:1504221-1504240 MS.gene27272:CDS 65.0%
GGCGAAGGCCTTCATGGCCA+TGG - chr1.1:1504227-1504246 MS.gene27272:CDS 65.0%
GTAGACGCCATGTGGCGAGG+TGG + chr1.1:1508830-1508849 None:intergenic 65.0%
GTTGCGAGGGGTGGACAAGG+AGG - chr1.1:1505930-1505949 MS.gene27272:intron 65.0%
TGCGAGGGGTGGACAAGGAG+GGG - chr1.1:1505932-1505951 MS.gene27272:intron 65.0%
CCCAAGGCCACCTCGCCACA+TGG - chr1.1:1508820-1508839 MS.gene27272:intron 70.0%
GCCATGTGGCGAGGTGGCCT+TGG + chr1.1:1508824-1508843 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 1503832 1509388 1503832 ID=MS.gene27272
chr1.1 mRNA 1503832 1509388 1503832 ID=MS.gene27272.t1;Parent=MS.gene27272
chr1.1 exon 1509205 1509388 1509205 ID=MS.gene27272.t1.exon1;Parent=MS.gene27272.t1
chr1.1 CDS 1509205 1509388 1509205 ID=cds.MS.gene27272.t1;Parent=MS.gene27272.t1
chr1.1 exon 1507267 1507358 1507267 ID=MS.gene27272.t1.exon2;Parent=MS.gene27272.t1
chr1.1 CDS 1507267 1507358 1507267 ID=cds.MS.gene27272.t1;Parent=MS.gene27272.t1
chr1.1 exon 1506847 1506930 1506847 ID=MS.gene27272.t1.exon3;Parent=MS.gene27272.t1
chr1.1 CDS 1506847 1506930 1506847 ID=cds.MS.gene27272.t1;Parent=MS.gene27272.t1
chr1.1 exon 1506219 1506296 1506219 ID=MS.gene27272.t1.exon4;Parent=MS.gene27272.t1
chr1.1 CDS 1506219 1506296 1506219 ID=cds.MS.gene27272.t1;Parent=MS.gene27272.t1
chr1.1 exon 1505615 1505815 1505615 ID=MS.gene27272.t1.exon5;Parent=MS.gene27272.t1
chr1.1 CDS 1505615 1505815 1505615 ID=cds.MS.gene27272.t1;Parent=MS.gene27272.t1
chr1.1 exon 1505413 1505520 1505413 ID=MS.gene27272.t1.exon6;Parent=MS.gene27272.t1
chr1.1 CDS 1505413 1505520 1505413 ID=cds.MS.gene27272.t1;Parent=MS.gene27272.t1
chr1.1 exon 1504568 1504642 1504568 ID=MS.gene27272.t1.exon7;Parent=MS.gene27272.t1
chr1.1 CDS 1504568 1504642 1504568 ID=cds.MS.gene27272.t1;Parent=MS.gene27272.t1
chr1.1 exon 1504092 1504273 1504092 ID=MS.gene27272.t1.exon8;Parent=MS.gene27272.t1
chr1.1 CDS 1504092 1504273 1504092 ID=cds.MS.gene27272.t1;Parent=MS.gene27272.t1
chr1.1 exon 1503832 1503931 1503832 ID=MS.gene27272.t1.exon9;Parent=MS.gene27272.t1
chr1.1 CDS 1503832 1503931 1503832 ID=cds.MS.gene27272.t1;Parent=MS.gene27272.t1
Gene Sequence

>MS.gene27272

ATGGGTGGTCATGGTGGTGATGTGATTATTTATGCTGATGAAGGAAAAGATACGTTATTGGAGTTTCATAGTAAGAATAGGTTTAATGCGAAACGTGGTGGTAATGTTGATGCTGTTGGTGTTTTTACTTCTTACTTGAGGAATGGAATTTCTGCTCCTACTGTTCGTATTCCTGTTCCTTTAGGTTTGTTTGCAAATTTCATTTTTTGATGTTATGGCTCTGTTTGGATATATAGGGAAACTTGCAACTTATAGCATAAGCGCTTATGTATAAGCTATTTTTGATAACTTGTGGTTTTGGATATAAGCTGAAAACAGTTTATGAACATGTTGTAAGTTGTTTTTATAAGTTCTTCCAATTAGTGGTGTTACAGGTGCTTATGTCAGTAGACAGGGGCGAAGGCCTTCATGGCCATGGGGTAGCAATGGCTACCCCAAAAGAAGAAGAAAACTTAAATAATTGGTATAACTTTATATGCAGCTACCCTATTAATATATTATTTGGCTACTCCAAACAATTTTATTGTTTTAAAGGGAGATGTTATTGCACAAATATTGATAATATGTTTAGTTTAGTGTCAATTATGGATAAATTTAAGTTCTCACAACTCTATAAAGCTGAACTTTTATAAATAACTATTGTTTAACTTTTATTATCTTCGTTGTCGTTTCATTAAATGTAAGTATAAATTATTGTAAATTTATTTTACTTTTTTATTAAGTTTAATATATTAATTTTTAAAATATATTTTATTTATTTTTTATATTTGGCCCCCTCGTAGAAATTGTGCGAGCTTCGCCGCTGTCAGTAGATAAGCTCAAATAAGCCGATTTAGACAGTCTATATATCTAATTCATGTTTTTCTAGTGTTGCTTCTATGTGAAGGTAAATGTTGTTATGTTTTTATTAGGGATTGTAGAAATATTATGTTTGATTAATTGATTGGTTGTTTTTGAGTTCATCATAGTTGGTGCAAAGATTTACATTGTAATGTTAGAGGATTTGGAAAATAAATACTCCCTCCGTCCCATATTAAGTGACACACTTGACTCTGTCATACATATCAATGCATATTTTTTTTTTATCTTTAGTATCTTTAATTATCTATTAGAAAAAATTATGAAAATTTAATATTTTGAAAATATTCATCGAGACGAATCCAACATCTTATATGATATTATTTATATTTGTATAATTAAGTTGATACAATTTTCACATTGTACTCCATTCTATGTTGGAAATGTGGATAAGATTAGAATAAGGTGCCATTTTTGTACTTACGAATAAAAATGTCAAGTAATAGTCCCGTAAGTATAGCTTAGATGGTAAAAGGCTGGAGGGACATTTGATATGTTGGAGCGTGAGTTTGAACTTGCAATCCCCCACTTTTCAGTACTTATTATGTGTGAGTTTCACAGCTTAGCTCTTTAGAACCAAAAAAAGTCAACTAATATAAAGTCAAATGCAATGTTTTAAAAACTGAACTGGTGTGAACATTAGGCCATGCTTATACTGCTTTTCAAATGCTAGAATCCGGACAAAACTGTCATCAATTCACTCAAATAACCGAATCGTGAACAATGTCTTTTCATATTTTAACTGGTTGAAGTGTCTGCCTCAGTTTTAAAAACATTGGTCATGGTGTTAGTTTGTTTTCTTGTTTTCACTTTGAATCAATCTGTGTTCAATATTATTACAATAAAAAATGCTCGTTGTTACGTAAGCAAATTAGAAAGAAAGTCACAAAATGAACTATCTTGAATTTGTTTGTGTTTTTGTCCATCAGTTAAATTCTATCTTACCACTTTGGCCATGTATGGTTAGTAATTTTGTATTGTCGTCCATTTCGTGAATAAATTGCTTCATACTGTTTAGCATTAATCTATTACAATAGTTGTCACCTTGTTTTCATTTCATTTTCTGTTTAAAATAATTTGTGAAGAATATTGTGAAACAACATTTTCGTGAAAACAACCCATAAAAAACTAAACTTGATTTCCCTCATTGAGTTTATTATTGTGAATTACAGGCACAGTTGTGAAAAGCAAACGGGGAAAGTTGTTAGCTGATTTAGCACGACCCGGTGATGAAGTTCTTGTTGCGAGGGGTGGACAAGGAGGGGTAATATACTAATACAGATTTGAATCTCTTTCAAATTCTAATCATTTTTCTAATTGAGTAGTGAATCAGACAGTTCAATCCATTTAAGACTAATCTAGCCGTAGGTAAGTTGTACAGATTCACATTGGTGGTAAAACAGAATAATTAGAGCAATAGAATAAATAAATAAATTCATACTCATTGGTAATGTACTCTGTAACTAAGGATTTTTTTTCCTTCAGAACTACTGTATCAACATTATCTTCTTTCCTGGAAAGTATTAGTTGTGGTTTACACCTATCTTGGTTATTATTGTTGTATTTTCAATCTGATTCAAACTTTTTCTCGTCTTACCAGATTAGCTTGTTAGAAATGCCACGGCATAATAGGAAAAAAACGACGAGTTTGACAACTAACGTGATGAGAGATGACTCGGATAAGGTAAAGTCTATTGATTATTTATGTGTTCACTGAAATACTTACTTGATTGCATCTCTCTGGAAGCCATCATTAGAGACTTCATTAGGCATGTATTGAAGGATTGAATCAACAAGGCTTTGTTCCTGCTCTCTCAGTTCAATTAATGTTGGTTTAAATTTTGCAATCCATAATTGTTCAACCAAATTTCTGTCCAAAATACTTGCTAATTTGTCAGTATTTCTGTCCAAATCTCTCTGGAACTATGATTTTAAATTATCAATTTCATATTCAGTTTTATCAGGAAATGAAAATGTATCTTGAAACCAGAAACAATAGTTTTTGAACATTTTGCATTTACTAGTGTAAAGTAGATGTCACGATATTTAGCTACCTTTGTTCCTATCTTAATGTAAGATAAAACACCTGTCATTTTAAAATGTATCTTGAAACCAGAAACAATAGTTTTTGAACATTTTGCATTTACTAGTGTAAAGTAGATGTCACGGTATTTAGCTACCTTTGTTCCTATCTTAATGTAAGATAAAACACCTGTATTTTAAAATTGTTACAGGTTTTGGTTCATGGTCAACCTGGGGAGGAAGTTAAGTTGGAGTTGATCCTACGAGTTGTAGCCGACGTTGGTTTAATTGTAAGTATTGTATCTATGCATAATGCCTTATTTAGTTCTCTGTTTGTTTTCTCACTTTATCTTCATAATAAATAACCGTGGAATGTTGATGAGTGGTTTTTGTGTCTTATCTCTTTACCAATGATGATAATTTTGAGTTTTCTGGGAAACTTAAGTATTGATTTTACCATGATTTTAGTGAAGATTGTGAAGGATAGTGTGGTGATGTGTTCTAAAGCATGAGTGGTTTTATTTAGTTTCTGTGTACTGTCTAAATCTTTTTTTAATATGGTGAACTAAAATTGGCTATTACCCTTTTTTTGTCCAAGTGAAATTCGTTGGCTGTAGAGTAAGTGAAAGACTGCTTTGTAGAAGGTTTTACTTTTTCATTCAGCTGTTCAAGATGAAGTTAATCTTGTTGTAGGGACTTCCAAATGCTGGGAAATCAACGCTTCTGGCAGCCATTACGCTTGCGAAACCCGATATTGCTGATTATCCATTTACAACATTAATGCCAAATCTTGGACGCCTTAATGGTGATCCCAACTTGGGAGCAGGGATGTATTCGTCTGAAGCTACATTGGCAGATTTGCCTGGTCTTATAGAAGGTGCTCACTTGGGAAAGGTATCGATAAATGCATATATATATCGCTGTCAAATGTCCATCTTTTAAACCATATAGCTGCTTATTAAATATGATTTTTTTTTTAATCTTTCAGGGTCTTGGTCGCAATTTTTTGAGGCATCTAAGAAGGACCCGGCTACTGGTCCATGTTGTTGACGCATCTACTGAAAACCCTGTAAATGACTACAGAACTGTCAGAGAAGTATGTACATTGTATTTTATGATTTAGATTCAAGTTTTTTCTTGGTTTAACAGGTTTACTTGAAGTTGTGGGTGTTTGGTTTACGCCCTTATAGACTCCATTATTTTTTTTAAGAAGCAAATATTAATAATATATCACCAATAGTGAACAGCAAAAGGTATGCTAGGAATATACATAGCTTACCCCACTGCAAAAACGATGCAGACAATGTGTTAGATTTAGCCCCCATGACTAGAAAAACCAACACACCTCAACGCACAAAAAATCCCAAACTAATCAAACGAGTACCGAATAATCTTATAGATTGCATTCTTCAACAATCAGAGAAGGGGAATTTGGTTCCTTTAAAGGGATATTTCACTTTTGAGGATAAATTAAGACCTCTCAACCATTGATATGAAGTTAAAAAATTGAAGTTTCAACACATCTATGTTTTATTATCCATGTATACATAATGTTTGCCGTTGAATTTTTAATCAAGTTTTTAGTCGAATGCTTGGAAGGGAGTTTAATTGGTATATTGCCTTTATTAGCTCTGATAATTTATCTCAAAAACCATCTATTGATAGCCACAAATTTCCTGTTTGTTCTTTATTCTTTCCTCTTTCTTTTGCTTTTGGATTTTGAGTCAAAAGCAGGAAGTAATTTGTGCATAAAATTTAGTCAGTTTATTGTGCATAAAGTAATTTGTGGTCAGTCCAACTTATCATTTCCCTCATGTTTTGGAGTTTTTAATCTTGCTCATTCTTCATTCTAATTCTGTTTTGCAGGAGTTGCGCATGTATAATCCTGATTACCTTGAACGACCATACATTGTTGTTTTGAATAAGATTGACCTGCCAGAGGTATGTAGTTTCCTACTACTACCCTCAATCTGAGTTTGAGTATATCTTTTAATTTCCTATTATTTTGTAAAGGGAGGCTCAGTGCATGAGGCTCCCATCATTGCGGAGTCTAGTGAGGGTCATACATTTAGCCCCTGAAATGGGAGGCTCTGTTTCTACATCTAGAACCCAAGGCCACCTCGCCACATGGCGTCTACTTTACCATTGCGCCAAAGCTCACCCTTCCGTATTACTATCTTGTAATATGAAAAAAATAAGTCACACAATAAAAATGTTCATTAATTTTAATTTCAGGTTGAGGACAAGCTTCCAACATTGACTCAAGAAATTATGAGAATTGGCAGCGATGGTGCTGCTTCTGAACCAAAACCAAGCTCTGAAGTTTCGGCTCAATTATTGACTGAAGAAAGTGACCCAAAGGAAAAGAAACTTGAGGACTATCCACGACCTCACTCTGTTATTGGAGTTAGTGTTCTGTAAGTGTTTGATGTTTTGTTTCATAATATTTCTATTCTGAAGTGTTTTCCTTCATAGCATTTCATTTCACAAATAATGCTAATTGTTTAGACAATTTATATCATACTTTTCATAGTACCCAGTCGGCTTAGGTCAAAATTTTATGTTGTCTTATTGCAGAAAGCGTATCATGGTTAGCGAGATGTTAAAGGAGATAAGGGCCGCTTTAAGGCAGTGCGTTGATTCCAAGGAACCGTTGGTTTCTAGTGTGCCACAGTGA

Protein sequence

>MS.gene27272.t1

MGGHGGDVIIYADEGKDTLLEFHSKNRFNAKRGGNVDAVGVFTSYLRNGISAPTVRIPVPLGTVVKSKRGKLLADLARPGDEVLVARGGQGGISLLEMPRHNRKKTTSLTTNVMRDDSDKVLVHGQPGEEVKLELILRVVADVGLIGLPNAGKSTLLAAITLAKPDIADYPFTTLMPNLGRLNGDPNLGAGMYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDASTENPVNDYRTVREELRMYNPDYLERPYIVVLNKIDLPEVEDKLPTLTQEIMRIGSDGAASEPKPSSEVSAQLLTEESDPKEKKLEDYPRPHSVIGVSVLKRIMVSEMLKEIRAALRQCVDSKEPLVSSVPQ