Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33514.t1 | XP_003602159.1 | 98.1 | 413 | 8 | 0 | 557 | 969 | 666 | 1078 | 5.30E-236 | 827.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33514.t1 | C0LGV1 | 57.1 | 333 | 123 | 4 | 618 | 941 | 751 | 1072 | 3.2e-104 | 381.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33514.t1 | G7J666 | 98.1 | 413 | 8 | 0 | 557 | 969 | 666 | 1078 | 3.8e-236 | 827.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene33514 | 0.814271 | 1.68E-51 | -1.69E-46 |
| MS.gene049151 | MS.gene33514 | 0.806213 | 9.17E-50 | -1.69E-46 |
| MS.gene049153 | MS.gene33514 | 0.808812 | 2.58E-50 | -1.69E-46 |
| MS.gene049260 | MS.gene33514 | 0.817602 | 3.03E-52 | -1.69E-46 |
| MS.gene049297 | MS.gene33514 | 0.811795 | 5.85E-51 | -1.69E-46 |
| MS.gene049346 | MS.gene33514 | 0.833312 | 5.73E-56 | -1.69E-46 |
| MS.gene049758 | MS.gene33514 | 0.821161 | 4.68E-53 | -1.69E-46 |
| MS.gene050128 | MS.gene33514 | 0.824874 | 6.37E-54 | -1.69E-46 |
| MS.gene050301 | MS.gene33514 | 0.865225 | 6.89E-65 | -1.69E-46 |
| MS.gene050432 | MS.gene33514 | 0.811036 | 8.56E-51 | -1.69E-46 |
| MS.gene050558 | MS.gene33514 | 0.813598 | 2.36E-51 | -1.69E-46 |
| MS.gene05101 | MS.gene33514 | 0.805991 | 1.02E-49 | -1.69E-46 |
| MS.gene051860 | MS.gene33514 | 0.833458 | 5.27E-56 | -1.69E-46 |
| MS.gene052178 | MS.gene33514 | 0.800606 | 1.33E-48 | -1.69E-46 |
| MS.gene052207 | MS.gene33514 | 0.809866 | 1.53E-50 | -1.69E-46 |
| MS.gene052253 | MS.gene33514 | 0.819529 | 1.11E-52 | -1.69E-46 |
| MS.gene052255 | MS.gene33514 | 0.806881 | 6.63E-50 | -1.69E-46 |
| MS.gene052287 | MS.gene33514 | 0.801553 | 8.53E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene33514 | 0.827725 | 1.33E-54 | -1.69E-46 |
| MS.gene053836 | MS.gene33514 | 0.862716 | 4.16E-64 | -1.69E-46 |
| MS.gene054473 | MS.gene33514 | 0.885553 | 7.36E-72 | -1.69E-46 |
| MS.gene054542 | MS.gene33514 | 0.816615 | 5.05E-52 | -1.69E-46 |
| MS.gene05455 | MS.gene33514 | 0.8054 | 1.36E-49 | -1.69E-46 |
| MS.gene054618 | MS.gene33514 | 0.817782 | 2.76E-52 | -1.69E-46 |
| MS.gene054983 | MS.gene33514 | 0.816674 | 4.90E-52 | -1.69E-46 |
| MS.gene055277 | MS.gene33514 | 0.807503 | 4.90E-50 | -1.69E-46 |
| MS.gene055303 | MS.gene33514 | 0.810616 | 1.05E-50 | -1.69E-46 |
| MS.gene055356 | MS.gene33514 | 0.802008 | 6.88E-49 | -1.69E-46 |
| MS.gene055358 | MS.gene33514 | 0.815512 | 8.90E-52 | -1.69E-46 |
| MS.gene055390 | MS.gene33514 | 0.825237 | 5.23E-54 | -1.69E-46 |
| MS.gene055422 | MS.gene33514 | 0.823495 | 1.34E-53 | -1.69E-46 |
| MS.gene055428 | MS.gene33514 | 0.831722 | 1.42E-55 | -1.69E-46 |
| MS.gene055604 | MS.gene33514 | 0.818859 | 1.57E-52 | -1.69E-46 |
| MS.gene056191 | MS.gene33514 | 0.821176 | 4.64E-53 | -1.69E-46 |
| MS.gene056612 | MS.gene33514 | 0.813919 | 2.01E-51 | -1.69E-46 |
| MS.gene056772 | MS.gene33514 | 0.834904 | 2.29E-56 | -1.69E-46 |
| MS.gene056933 | MS.gene33514 | 0.802192 | 6.31E-49 | -1.69E-46 |
| MS.gene05702 | MS.gene33514 | 0.813436 | 2.56E-51 | -1.69E-46 |
| MS.gene057121 | MS.gene33514 | 0.805395 | 1.36E-49 | -1.69E-46 |
| MS.gene05733 | MS.gene33514 | 0.802615 | 5.16E-49 | -1.69E-46 |
| MS.gene057448 | MS.gene33514 | 0.819253 | 1.28E-52 | -1.69E-46 |
| MS.gene057449 | MS.gene33514 | 0.80206 | 6.71E-49 | -1.69E-46 |
| MS.gene057450 | MS.gene33514 | 0.821269 | 4.42E-53 | -1.69E-46 |
| MS.gene057469 | MS.gene33514 | 0.826275 | 2.97E-54 | -1.69E-46 |
| MS.gene058002 | MS.gene33514 | 0.856292 | 3.55E-62 | -1.69E-46 |
| MS.gene05811 | MS.gene33514 | 0.84946 | 3.19E-60 | -1.69E-46 |
| MS.gene058142 | MS.gene33514 | 0.818503 | 1.89E-52 | -1.69E-46 |
| MS.gene058236 | MS.gene33514 | 0.812256 | 4.64E-51 | -1.69E-46 |
| MS.gene05842 | MS.gene33514 | 0.810541 | 1.10E-50 | -1.69E-46 |
| MS.gene05907 | MS.gene33514 | 0.841795 | 3.82E-58 | -1.69E-46 |
| MS.gene059518 | MS.gene33514 | 0.81474 | 1.32E-51 | -1.69E-46 |
| MS.gene059597 | MS.gene33514 | 0.838566 | 2.67E-57 | -1.69E-46 |
| MS.gene059692 | MS.gene33514 | 0.809184 | 2.14E-50 | -1.69E-46 |
| MS.gene059695 | MS.gene33514 | 0.809114 | 2.22E-50 | -1.69E-46 |
| MS.gene05984 | MS.gene33514 | 0.824594 | 7.42E-54 | -1.69E-46 |
| MS.gene059894 | MS.gene33514 | 0.833582 | 4.91E-56 | -1.69E-46 |
| MS.gene06037 | MS.gene33514 | 0.849747 | 2.65E-60 | -1.69E-46 |
| MS.gene060407 | MS.gene33514 | 0.803652 | 3.15E-49 | -1.69E-46 |
| MS.gene060559 | MS.gene33514 | 0.807785 | 4.26E-50 | -1.69E-46 |
| MS.gene061049 | MS.gene33514 | 0.863 | 3.40E-64 | -1.69E-46 |
| MS.gene061112 | MS.gene33514 | 0.802467 | 5.53E-49 | -1.69E-46 |
| MS.gene061265 | MS.gene33514 | 0.808006 | 3.83E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 183 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGTCTGATAATAACATTTA+TGG | 0.125422 | 3.4:-82763165 | MS.gene33514:CDS |
| CTGTATGAAAATCAGCTTTC+TGG | 0.135109 | 3.4:-82763381 | MS.gene33514:CDS |
| GTACAGTTTCCAAGACTTTC+TGG | 0.148922 | 3.4:+82763279 | None:intergenic |
| GGAAACATTCTTTATGAATT+AGG | 0.157644 | 3.4:-82763360 | MS.gene33514:CDS |
| CTGTTTGACAACCAGCTTTC+TGG | 0.178047 | 3.4:-82763672 | MS.gene33514:CDS |
| GGTGGTTCTTCATTCTTTAC+TGG | 0.182360 | 3.4:+82761800 | None:intergenic |
| CTGATATCAAACAGGCTTTC+AGG | 0.189770 | 3.4:-82762877 | MS.gene33514:CDS |
| CTTGCAGTTACTGGAATTTC+TGG | 0.190669 | 3.4:-82763525 | MS.gene33514:CDS |
| ATTCAAGGGGACAATTATTA+TGG | 0.200633 | 3.4:-82762007 | MS.gene33514:CDS |
| GTAACAACCATGCCTTTATT+TGG | 0.216064 | 3.4:+82760629 | None:intergenic |
| CAGAATATGGATACAGTTTA+AGG | 0.242067 | 3.4:-82760976 | MS.gene33514:CDS |
| GCTGTTACATCTTTCATTGT+AGG | 0.255234 | 3.4:+82760695 | None:intergenic |
| TGCCTATATCCGGTGGAATT+TGG | 0.261117 | 3.4:+82762854 | None:intergenic |
| TTTCTTGGACTTGCAGTTAC+TGG | 0.261686 | 3.4:-82763534 | MS.gene33514:CDS |
| GATAACTTTCCTATTTCTTT+TGG | 0.262507 | 3.4:+82763786 | None:intergenic |
| CTTAGCTACAATACTTTAAC+AGG | 0.268232 | 3.4:-82763816 | MS.gene33514:CDS |
| CCATGAACAGAGAATGTTCT+TGG | 0.269927 | 3.4:-82761630 | MS.gene33514:CDS |
| GAACAATGAACTGCTGCTTT+TGG | 0.270553 | 3.4:+82760602 | None:intergenic |
| TGATGTTGAAGTTAAGCTTT+TGG | 0.281696 | 3.4:+82761936 | None:intergenic |
| GGAGAAATACCTTCATATAT+TGG | 0.284523 | 3.4:-82763144 | MS.gene33514:CDS |
| TTCATTGTAGGTCTTTCTTC+TGG | 0.292294 | 3.4:+82760707 | None:intergenic |
| GGTCAAATTCCGCAAGAAAT+AGG | 0.301698 | 3.4:-82762784 | MS.gene33514:CDS |
| TCTCTCAAAACTTTCAATCT+TGG | 0.302198 | 3.4:-82762323 | MS.gene33514:CDS |
| GGAAGCATTCCCAAGAGTTT+TGG | 0.310262 | 3.4:-82762568 | MS.gene33514:CDS |
| CAGCTTTCTGGTATGATTCC+TGG | 0.313526 | 3.4:-82763660 | MS.gene33514:CDS |
| TTGAGTTGGAATTCTCTTAC+TGG | 0.315285 | 3.4:-82762370 | MS.gene33514:CDS |
| CCAAGAACATTCTCTGTTCA+TGG | 0.318414 | 3.4:+82761630 | None:intergenic |
| CGGAGAGATTCCACGTGTTA+TGG | 0.324859 | 3.4:-82763073 | MS.gene33514:CDS |
| TGAAGCTCCCCTATGCTTGC+TGG | 0.331671 | 3.4:+82763495 | None:intergenic |
| GGAACTATACCAAAAGAAAT+AGG | 0.333500 | 3.4:-82763795 | MS.gene33514:CDS |
| TTCACATGATCTTGAGAAAC+TGG | 0.336332 | 3.4:+82760580 | None:intergenic |
| CACGTAGTTGCAGGTTCTTA+TGG | 0.339005 | 3.4:-82761413 | MS.gene33514:CDS |
| CTACCTTCTGCTGCATTTGC+CGG | 0.340592 | 3.4:-82762175 | MS.gene33514:CDS |
| GATATCAGATTGTAAGGCTT+TGG | 0.342427 | 3.4:-82763559 | MS.gene33514:CDS |
| GGTATGATTCCTGGAGAAAT+AGG | 0.343516 | 3.4:-82763651 | MS.gene33514:CDS |
| CGGTTTGATTCCTCAGTCAT+TGG | 0.344831 | 3.4:-82762497 | MS.gene33514:CDS |
| TAGGCATGAAAATGATGATT+TGG | 0.345396 | 3.4:-82760657 | MS.gene33514:CDS |
| AATGCAAAGGTCAGGGTTAC+CGG | 0.358396 | 3.4:+82762156 | None:intergenic |
| GGTTTGATTCCTCAGTCATT+GGG | 0.370124 | 3.4:-82762496 | MS.gene33514:CDS |
| CTTGGATCAAACAACCTTAC+TGG | 0.374301 | 3.4:-82762805 | MS.gene33514:CDS |
| AATGCAGATATCAGATTGTA+AGG | 0.382043 | 3.4:-82763565 | MS.gene33514:CDS |
| GATTCAAAACTGTTCAGCTT+TGG | 0.387667 | 3.4:-82763415 | MS.gene33514:CDS |
| GTGCTTCTTGAGATGCTAAC+TGG | 0.388191 | 3.4:-82760917 | MS.gene33514:CDS |
| GGAGAGATTCCACGTGTTAT+GGG | 0.390470 | 3.4:-82763072 | MS.gene33514:CDS |
| ATATGCAATGGTAGTTTGTT+CGG | 0.390911 | 3.4:-82761659 | MS.gene33514:CDS |
| GACAAGTTTCCAACTGAACT+TGG | 0.391103 | 3.4:+82763858 | None:intergenic |
| GGTGGAATTCCAACCACAAT+TGG | 0.394333 | 3.4:-82763723 | MS.gene33514:CDS |
| TTAAGTAACAACAAGCTCAT+AGG | 0.398669 | 3.4:-82762445 | MS.gene33514:CDS |
| GGTTCTATTCCCAATGAGAT+TGG | 0.400585 | 3.4:-82762424 | MS.gene33514:CDS |
| ATAGTCGGAAAAGGCGTCTC+AGG | 0.405028 | 3.4:-82761881 | MS.gene33514:CDS |
| GATTTGGATAAACCAAATAA+AGG | 0.407148 | 3.4:-82760641 | MS.gene33514:CDS |
| GAATGGAACCAACTGATAAC+AGG | 0.408030 | 3.4:-82760895 | MS.gene33514:CDS |
| ATGTAAGGATTTGCAGTTGT+TGG | 0.408180 | 3.4:-82762470 | MS.gene33514:CDS |
| ATTATTATCTACACTTTCCT+TGG | 0.411873 | 3.4:-82762082 | MS.gene33514:CDS |
| AATCGTCCATCGCGACGTTA+AGG | 0.412157 | 3.4:-82761531 | MS.gene33514:CDS |
| CACTTGTTAATGCAAAGGTC+AGG | 0.413864 | 3.4:+82762148 | None:intergenic |
| CTTTCTTCAAACAGAATAAC+CGG | 0.414141 | 3.4:-82762589 | MS.gene33514:CDS |
| AGAGCCTCGCACGTAGTTGC+AGG | 0.417313 | 3.4:-82761422 | MS.gene33514:CDS |
| AACAGAGAATGTTCTTGGAT+TGG | 0.417779 | 3.4:-82761625 | MS.gene33514:CDS |
| GCTTGGCAGAATCAACTTCA+TGG | 0.419546 | 3.4:-82763021 | MS.gene33514:CDS |
| TGTAAGCTCGCCAAAACTCT+TGG | 0.425926 | 3.4:+82762558 | None:intergenic |
| TTGCAAGTAACCAATCTCAT+TGG | 0.429278 | 3.4:+82762414 | None:intergenic |
| GTAGGTCTTTCTTCTGGTGA+TGG | 0.434253 | 3.4:+82760713 | None:intergenic |
| GATTGGTTACTTGCAAGGAT+TGG | 0.441460 | 3.4:-82762407 | MS.gene33514:CDS |
| CCTAGCACTTGAAGCATCTC+TGG | 0.444099 | 3.4:+82760758 | None:intergenic |
| GGAGATATTCCTTATGAGAT+AGG | 0.444460 | 3.4:-82762712 | MS.gene33514:CDS |
| TCTCAGTAATCTACTCTCAT+TGG | 0.444548 | 3.4:-82763199 | MS.gene33514:CDS |
| GGCCAAATTCCACCGGATAT+AGG | 0.444729 | 3.4:-82762856 | MS.gene33514:CDS |
| CAGCAATGCTCAAAGAGATT+AGG | 0.445444 | 3.4:-82760676 | MS.gene33514:CDS |
| TTCAAGGGGACAATTATTAT+GGG | 0.449261 | 3.4:-82762006 | MS.gene33514:CDS |
| TCAGTCATTGGGGATATGTA+AGG | 0.450105 | 3.4:-82762485 | MS.gene33514:CDS |
| GAAAGCTCAAACTTCTCAAA+AGG | 0.452931 | 3.4:+82762761 | None:intergenic |
| AAAACTCTTGGGAATGCTTC+CGG | 0.456056 | 3.4:+82762570 | None:intergenic |
| ACAGAGAATGTTCTTGGATT+GGG | 0.458705 | 3.4:-82761624 | MS.gene33514:CDS |
| ATTAGTTGATCTTAATGTGT+TGG | 0.458892 | 3.4:-82762614 | MS.gene33514:CDS |
| CTTGCGGAATTTGACCAGTA+AGG | 0.459177 | 3.4:+82762791 | None:intergenic |
| ACTTCTGCAGTTGTCACTTG+TGG | 0.459908 | 3.4:-82762049 | MS.gene33514:CDS |
| CACTCTCTTGAGGCTTTGCA+TGG | 0.462074 | 3.4:+82763335 | None:intergenic |
| TTCAACTGTCCTATTTCTCC+AGG | 0.464347 | 3.4:+82763642 | None:intergenic |
| CTTTGAACAGTTTCCAATTG+TGG | 0.467776 | 3.4:+82763710 | None:intergenic |
| AGTTGTTGCTGATATCAAAC+AGG | 0.470767 | 3.4:-82762885 | MS.gene33514:CDS |
| TTGTCAGATAATAACCTTAG+TGG | 0.473538 | 3.4:-82762733 | MS.gene33514:CDS |
| TGACATTGTCACAAAGTTGT+CGG | 0.474259 | 3.4:-82761912 | MS.gene33514:CDS |
| GTAAGCTCGCCAAAACTCTT+GGG | 0.474423 | 3.4:+82762559 | None:intergenic |
| GCTCTTGAATCGCTGCGAGC+TGG | 0.475710 | 3.4:-82763618 | MS.gene33514:CDS |
| TTACAATCTGATATCTGCAT+TGG | 0.477020 | 3.4:+82763567 | None:intergenic |
| TTCTTATTGACTTGTTTCCT+CGG | 0.477312 | 3.4:+82762107 | None:intergenic |
| CTGGTGCACCTGCCTATATC+CGG | 0.478891 | 3.4:+82762844 | None:intergenic |
| AACTCACTCTCTTCTATGCT+TGG | 0.478928 | 3.4:-82763038 | MS.gene33514:CDS |
| CTGTGAGCTTGTTGTAAGAT+AGG | 0.479388 | 3.4:+82762299 | None:intergenic |
| ATGCAGCAGAAGGTAGATCT+TGG | 0.481777 | 3.4:+82762182 | None:intergenic |
| ACGTGTTATGGGGAACTTGA+AGG | 0.481821 | 3.4:-82763061 | MS.gene33514:CDS |
| AATGAGATTGGTTACTTGCA+AGG | 0.483027 | 3.4:-82762412 | MS.gene33514:CDS |
| GCAGGTGCACCAGCTTGATC+AGG | 0.484515 | 3.4:-82762834 | MS.gene33514:CDS |
| ACAGCAGAAGTTCAGACGCT+TGG | 0.486975 | 3.4:-82761761 | MS.gene33514:CDS |
| TGCAAGTAACCAATCTCATT+GGG | 0.489264 | 3.4:+82762415 | None:intergenic |
| GAGGAATCAAACCGGTGATA+AGG | 0.489558 | 3.4:+82762506 | None:intergenic |
| GTGAGATTCCAGCAAGCATA+GGG | 0.490723 | 3.4:-82763503 | MS.gene33514:CDS |
| TGGAGAAATAGGACAGTTGA+AGG | 0.491788 | 3.4:-82763640 | MS.gene33514:CDS |
| ATCATACTTGGAACAGCTCA+TGG | 0.495690 | 3.4:-82761587 | MS.gene33514:CDS |
| CTGTGGCAGAACAATTTCAC+TGG | 0.498135 | 3.4:-82763309 | MS.gene33514:CDS |
| TAACTTTAATGAGGAAGGAA+TGG | 0.503999 | 3.4:+82762636 | None:intergenic |
| GCTGTAAACAAATCTCTCTC+TGG | 0.504056 | 3.4:+82761779 | None:intergenic |
| GTTACAATGTGAGCACCCTC+TGG | 0.504362 | 3.4:+82760869 | None:intergenic |
| CTCAAAAGGCCTATTTCTTG+CGG | 0.506612 | 3.4:+82762775 | None:intergenic |
| TGGAAACTGTACAAATCTAA+AGG | 0.509356 | 3.4:-82763268 | MS.gene33514:CDS |
| CTTTCACACAACTTCCTCAC+TGG | 0.510155 | 3.4:-82762949 | MS.gene33514:CDS |
| ACGTCGCGATGGACGATTGG+AGG | 0.510642 | 3.4:+82761536 | None:intergenic |
| ACTAATAACTTTAATGAGGA+AGG | 0.516361 | 3.4:+82762631 | None:intergenic |
| GCACAGTTACCTATCTCATA+AGG | 0.520181 | 3.4:+82762703 | None:intergenic |
| GAACAGTTTCCAATTGTGGT+TGG | 0.522280 | 3.4:+82763714 | None:intergenic |
| GCAAGGTATAAGATCATACT+TGG | 0.523849 | 3.4:-82761599 | MS.gene33514:CDS |
| GATTCAAACATAGTCGGAAA+AGG | 0.528411 | 3.4:-82761890 | MS.gene33514:CDS |
| GTCTACACAGCTCATCTCAC+AGG | 0.533039 | 3.4:-82763453 | MS.gene33514:CDS |
| GGAACCATTCCAGAAAGTCT+TGG | 0.533289 | 3.4:-82763288 | MS.gene33514:CDS |
| TCTGGAATCCTGTTATCAGT+TGG | 0.534439 | 3.4:+82760887 | None:intergenic |
| CTTGAATCGCTGCGAGCTGG+CGG | 0.536217 | 3.4:-82763615 | MS.gene33514:CDS |
| GGTGAGATTCCAAGTTCAGT+TGG | 0.537584 | 3.4:-82763867 | MS.gene33514:CDS |
| CATAAGGAATATCTCCACTA+AGG | 0.537632 | 3.4:+82762719 | None:intergenic |
| GAATTTCTCCGAAAATACCT+TGG | 0.538394 | 3.4:+82763589 | None:intergenic |
| TTGAGGAAGTGGAAATGGAA+TGG | 0.538962 | 3.4:-82761973 | MS.gene33514:CDS |
| TCTCACAGGTCGAATTCCAC+TGG | 0.538979 | 3.4:-82763439 | MS.gene33514:CDS |
| TTAACGTCGCGATGGACGAT+TGG | 0.539556 | 3.4:+82761533 | None:intergenic |
| CCAGAGATGCTTCAAGTGCT+AGG | 0.541015 | 3.4:-82760758 | MS.gene33514:CDS |
| CGTCGCGATGGACGATTGGA+GGG | 0.542077 | 3.4:+82761537 | None:intergenic |
| TCTTGAGATGCTAACTGGAA+TGG | 0.543951 | 3.4:-82760912 | MS.gene33514:CDS |
| TTATTGCAGTTAAGAAGCTA+TGG | 0.545655 | 3.4:-82761823 | MS.gene33514:CDS |
| CGTTAAGGCTAACAACATCT+TGG | 0.548948 | 3.4:-82761516 | MS.gene33514:CDS |
| TCTTATGGATACATAGCTCC+TGG | 0.553499 | 3.4:-82761398 | MS.gene33514:intron |
| ACAGGTACTCTCATAGTACT+TGG | 0.554361 | 3.4:-82762280 | MS.gene33514:CDS |
| AGCTTGATCAGGTTAAGACT+TGG | 0.554662 | 3.4:-82762823 | MS.gene33514:CDS |
| TTAAGCAGAAACCTTATCAC+CGG | 0.555627 | 3.4:-82762517 | MS.gene33514:CDS |
| TCACAGTTAGATAACTCTGT+TGG | 0.555746 | 3.4:+82762991 | None:intergenic |
| CAGGAATCATACCAGAAAGC+TGG | 0.559380 | 3.4:+82763661 | None:intergenic |
| ATCAACTAATAACTTTAATG+AGG | 0.560582 | 3.4:+82762627 | None:intergenic |
| AAATTCCACCGGATATAGGC+AGG | 0.561254 | 3.4:-82762852 | MS.gene33514:CDS |
| TATGACACTTGTTAATGCAA+AGG | 0.562117 | 3.4:+82762143 | None:intergenic |
| TTAGATAATAACAAATTCAC+CGG | 0.564057 | 3.4:-82763093 | MS.gene33514:CDS |
| TTGTTTGATTACATATGCAA+TGG | 0.566473 | 3.4:-82761671 | MS.gene33514:CDS |
| GGATAAACCAAATAAAGGCA+TGG | 0.567462 | 3.4:-82760636 | MS.gene33514:CDS |
| CAGTAATCTACTCTCATTGG+AGG | 0.572753 | 3.4:-82763196 | MS.gene33514:CDS |
| GAAAGTTATCTGAACTGAGA+TGG | 0.573412 | 3.4:-82763773 | MS.gene33514:CDS |
| CATAACACGTGGAATCTCTC+CGG | 0.574376 | 3.4:+82763074 | None:intergenic |
| GTTTCCAAGACTTTCTGGAA+TGG | 0.574818 | 3.4:+82763284 | None:intergenic |
| CAATGACTGAGGAATCAAAC+CGG | 0.576207 | 3.4:+82762498 | None:intergenic |
| CTATCTTACAACAAGCTCAC+AGG | 0.576578 | 3.4:-82762298 | MS.gene33514:CDS |
| CTGCGAGCTGGCGGAAACCA+AGG | 0.577309 | 3.4:-82763606 | MS.gene33514:CDS |
| GGTGAGATTCCAGCAAGCAT+AGG | 0.583216 | 3.4:-82763504 | MS.gene33514:CDS |
| AGTAGATTACTGAGAGACAA+AGG | 0.583316 | 3.4:+82763207 | None:intergenic |
| TAATTCAAGTTGATTCAGCA+TGG | 0.590613 | 3.4:+82763113 | None:intergenic |
| TTGTCGGATTCAAACATAGT+CGG | 0.590797 | 3.4:-82761896 | MS.gene33514:CDS |
| AAGTCTTAACCTGATCAAGC+TGG | 0.590874 | 3.4:+82762825 | None:intergenic |
| AGGGTGCTCACATTGTAACA+TGG | 0.596449 | 3.4:-82760865 | MS.gene33514:CDS |
| TGTTCTTGGATTGGGATGCA+AGG | 0.601040 | 3.4:-82761616 | MS.gene33514:CDS |
| ACTTGTTAATGCAAAGGTCA+GGG | 0.603000 | 3.4:+82762149 | None:intergenic |
| GCCTCAAGAGAGTGTTGCTG+TGG | 0.603191 | 3.4:-82763326 | MS.gene33514:CDS |
| TTCAGACGCTTGGATCGATA+CGG | 0.603245 | 3.4:-82761751 | MS.gene33514:CDS |
| GCTTTCAGGCCAAATTCCAC+CGG | 0.605226 | 3.4:-82762863 | MS.gene33514:CDS |
| CGAGGCTCTTGCACACTCTG+AGG | 0.608210 | 3.4:+82761436 | None:intergenic |
| AAGGCTAACAACATCTTGGT+AGG | 0.609220 | 3.4:-82761512 | MS.gene33514:CDS |
| AAGAGTGATGTGTACAGCTA+TGG | 0.611542 | 3.4:-82760944 | MS.gene33514:CDS |
| GTGCACCTGCCTATATCCGG+TGG | 0.611634 | 3.4:+82762847 | None:intergenic |
| ATTAACAAGTGTCATACAAG+TGG | 0.612161 | 3.4:-82762136 | MS.gene33514:CDS |
| TTTAGCATTAAGGATTCAAG+GGG | 0.617976 | 3.4:-82762020 | MS.gene33514:CDS |
| GTTTGATTCCTCAGTCATTG+GGG | 0.623012 | 3.4:-82762495 | MS.gene33514:CDS |
| GAGAGATTCCACGTGTTATG+GGG | 0.624051 | 3.4:-82763071 | MS.gene33514:CDS |
| GCCACAGCAACACTCTCTTG+AGG | 0.624865 | 3.4:+82763325 | None:intergenic |
| GGGTGCTCACATTGTAACAT+GGG | 0.627112 | 3.4:-82760864 | MS.gene33514:CDS |
| TTACCGGCAAATGCAGCAGA+AGG | 0.632133 | 3.4:+82762172 | None:intergenic |
| GTAAACAAATCTCTCTCTGG+TGG | 0.632139 | 3.4:+82761782 | None:intergenic |
| TTCAAGTTCCCCATAACACG+TGG | 0.632271 | 3.4:+82763063 | None:intergenic |
| TGTTAGCCTTAACGTCGCGA+TGG | 0.637030 | 3.4:+82761525 | None:intergenic |
| TTGAATTCGAATTCGTTACA+CGG | 0.638145 | 3.4:-82763744 | MS.gene33514:CDS |
| AGAACCTGCAACTACGTGCG+AGG | 0.667384 | 3.4:+82761418 | None:intergenic |
| TTACATATCCCCAATGACTG+AGG | 0.667864 | 3.4:+82762487 | None:intergenic |
| CAGCAATTATTATTACAGTG+TGG | 0.676885 | 3.4:-82760791 | MS.gene33514:CDS |
| AATTCGAATTCGTTACACGG+TGG | 0.683513 | 3.4:-82763741 | MS.gene33514:CDS |
| AACTGATAACAGGATTCCAG+AGG | 0.691144 | 3.4:-82760885 | MS.gene33514:CDS |
| ACTGATAACAGGATTCCAGA+GGG | 0.713808 | 3.4:-82760884 | MS.gene33514:CDS |
| CAGAAGTTAAGATAATACCA+AGG | 0.716975 | 3.4:+82762065 | None:intergenic |
| TGAGATTCCAGCAAGCATAG+GGG | 0.737280 | 3.4:-82763502 | MS.gene33514:CDS |
| AATTTGGAATTGGACCAGTG+AGG | 0.757080 | 3.4:+82762935 | None:intergenic |
| CATACAAGTGGAAATCTCCG+AGG | 0.765250 | 3.4:-82762124 | MS.gene33514:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAGTATTATATATCTA+TGG | - | chr3.4:82763804-82763823 | MS.gene33514:CDS | 10.0% |
| !! | AAAATACAGTAAATGTAAAG+CGG | + | chr3.4:82763231-82763250 | None:intergenic | 20.0% |
| !! | ATCAACTAATAACTTTAATG+AGG | + | chr3.4:82761649-82761668 | None:intergenic | 20.0% |
| !! | CAAATAACACAATTGTAATA+TGG | + | chr3.4:82763835-82763854 | None:intergenic | 20.0% |
| !! | TTAGATAATAACAAATTCAC+CGG | - | chr3.4:82761180-82761199 | MS.gene33514:intron | 20.0% |
| !!! | ATGTTACTTAAGAAATTAAC+AGG | + | chr3.4:82763769-82763788 | None:intergenic | 20.0% |
| !!! | TTTTCATTTTATGTCCATTT+TGG | - | chr3.4:82763247-82763266 | MS.gene33514:CDS | 20.0% |
| ! | ACTAATAACTTTAATGAGGA+AGG | + | chr3.4:82761645-82761664 | None:intergenic | 25.0% |
| ! | ATTAGTTGATCTTAATGTGT+TGG | - | chr3.4:82761659-82761678 | MS.gene33514:CDS | 25.0% |
| ! | ATTATTATCTACACTTTCCT+TGG | - | chr3.4:82762191-82762210 | MS.gene33514:CDS | 25.0% |
| ! | GAAAAATTGCCAATATATGA+AGG | + | chr3.4:82761141-82761160 | None:intergenic | 25.0% |
| ! | GAGAATTTGCAAAAATGAAA+TGG | + | chr3.4:82762931-82762950 | None:intergenic | 25.0% |
| ! | GATTTGGATAAACCAAATAA+AGG | - | chr3.4:82763632-82763651 | MS.gene33514:CDS | 25.0% |
| ! | GGAAACATTCTTTATGAATT+AGG | - | chr3.4:82760913-82760932 | MS.gene33514:CDS | 25.0% |
| ! | GTGTCTGATAATAACATTTA+TGG | - | chr3.4:82761108-82761127 | MS.gene33514:intron | 25.0% |
| ! | TGTAGATGAAAAAGAGAATT+TGG | + | chr3.4:82761357-82761376 | None:intergenic | 25.0% |
| ! | TTGTTTGATTACATATGCAA+TGG | - | chr3.4:82762602-82762621 | MS.gene33514:CDS | 25.0% |
| !! | AAGAATATAGTGAGACTTTT+AGG | - | chr3.4:82762548-82762567 | MS.gene33514:CDS | 25.0% |
| !! | ATATTCTTTTGAACTTGAGT+TGG | - | chr3.4:82761889-82761908 | MS.gene33514:CDS | 25.0% |
| !! | ATTTGAAAAAGTCTTTGGAA+TGG | + | chr3.4:82761931-82761950 | None:intergenic | 25.0% |
| !! | GTTTCTTACAATAGATTTTC+TGG | - | chr3.4:82762044-82762063 | MS.gene33514:CDS | 25.0% |
| !! | TGAAAAAGAGAATTTGGAAT+TGG | + | chr3.4:82761351-82761370 | None:intergenic | 25.0% |
| !! | TGATTTTTCTTTGAATTCTC+TGG | - | chr3.4:82761032-82761051 | MS.gene33514:intron | 25.0% |
| !! | TTTTAGCATTAAGGATTCAA+GGG | - | chr3.4:82762252-82762271 | MS.gene33514:CDS | 25.0% |
| !!! | ATTTTAGCATTAAGGATTCA+AGG | - | chr3.4:82762251-82762270 | MS.gene33514:CDS | 25.0% |
| !!! | GATAACTTTCCTATTTCTTT+TGG | + | chr3.4:82760490-82760509 | None:intergenic | 25.0% |
| !!! | TTTGAAAAAGTCTTTGGAAT+GGG | + | chr3.4:82761930-82761949 | None:intergenic | 25.0% |
| AATGCAGATATCAGATTGTA+AGG | - | chr3.4:82760708-82760727 | MS.gene33514:CDS | 30.0% | |
| AATGTTGTCATTAGCCAAAA+TGG | + | chr3.4:82763264-82763283 | None:intergenic | 30.0% | |
| ACCATATTTGGAAGAGAAAA+TGG | - | chr3.4:82763088-82763107 | MS.gene33514:CDS | 30.0% | |
| ACTTAAGTCGTAACACTTAA+AGG | - | chr3.4:82763018-82763037 | MS.gene33514:CDS | 30.0% | |
| AGTTAGAACATAAGTTTACG+TGG | - | chr3.4:82763129-82763148 | MS.gene33514:CDS | 30.0% | |
| ATGTGTAAAACTGCAGAATA+TGG | - | chr3.4:82763284-82763303 | MS.gene33514:CDS | 30.0% | |
| ATTAACAAGTGTCATACAAG+TGG | - | chr3.4:82762137-82762156 | MS.gene33514:CDS | 30.0% | |
| ATTCAAGGGGACAATTATTA+TGG | - | chr3.4:82762266-82762285 | MS.gene33514:CDS | 30.0% | |
| CAGAAGTTAAGATAATACCA+AGG | + | chr3.4:82762211-82762230 | None:intergenic | 30.0% | |
| CAGAATATGGATACAGTTTA+AGG | - | chr3.4:82763297-82763316 | MS.gene33514:CDS | 30.0% | |
| CAGCAATTATTATTACAGTG+TGG | - | chr3.4:82763482-82763501 | MS.gene33514:CDS | 30.0% | |
| CCATATTTGGAAGAGAAAAT+GGG | - | chr3.4:82763089-82763108 | MS.gene33514:CDS | 30.0% | |
| CTTAGCTACAATACTTTAAC+AGG | - | chr3.4:82760457-82760476 | MS.gene33514:intron | 30.0% | |
| CTTTCTTCAAACAGAATAAC+CGG | - | chr3.4:82761684-82761703 | MS.gene33514:CDS | 30.0% | |
| GAGAGATTTGAAAAAGTCTT+TGG | + | chr3.4:82761936-82761955 | None:intergenic | 30.0% | |
| GGAACTATACCAAAAGAAAT+AGG | - | chr3.4:82760478-82760497 | MS.gene33514:intron | 30.0% | |
| GGAGAAATACCTTCATATAT+TGG | - | chr3.4:82761129-82761148 | MS.gene33514:intron | 30.0% | |
| TAACTTTAATGAGGAAGGAA+TGG | + | chr3.4:82761640-82761659 | None:intergenic | 30.0% | |
| TAGGCATGAAAATGATGATT+TGG | - | chr3.4:82763616-82763635 | MS.gene33514:CDS | 30.0% | |
| TCTCTCAAAACTTTCAATCT+TGG | - | chr3.4:82761950-82761969 | MS.gene33514:CDS | 30.0% | |
| TGGAAACTGTACAAATCTAA+AGG | - | chr3.4:82761005-82761024 | MS.gene33514:intron | 30.0% | |
| TTAAGTAACAACAAGCTCAT+AGG | - | chr3.4:82761828-82761847 | MS.gene33514:CDS | 30.0% | |
| TTACAATCTGATATCTGCAT+TGG | + | chr3.4:82760709-82760728 | None:intergenic | 30.0% | |
| TTATTGCAGTTAAGAAGCTA+TGG | - | chr3.4:82762450-82762469 | MS.gene33514:CDS | 30.0% | |
| TTCAAGGGGACAATTATTAT+GGG | - | chr3.4:82762267-82762286 | MS.gene33514:CDS | 30.0% | |
| TTGAATTCGAATTCGTTACA+CGG | - | chr3.4:82760529-82760548 | MS.gene33514:intron | 30.0% | |
| TTGCATAAAAATGAGCTTCA+AGG | - | chr3.4:82761612-82761631 | MS.gene33514:CDS | 30.0% | |
| TTGTCAGATAATAACCTTAG+TGG | - | chr3.4:82761540-82761559 | MS.gene33514:CDS | 30.0% | |
| TTTAGCATTAAGGATTCAAG+GGG | - | chr3.4:82762253-82762272 | MS.gene33514:CDS | 30.0% | |
| ! | AGGCATTCTTTTTATAAACC+TGG | - | chr3.4:82763038-82763057 | MS.gene33514:CDS | 30.0% |
| ! | TATGACACTTGTTAATGCAA+AGG | + | chr3.4:82762133-82762152 | None:intergenic | 30.0% |
| ! | TGATGTTGAAGTTAAGCTTT+TGG | + | chr3.4:82762340-82762359 | None:intergenic | 30.0% |
| ! | TTTTCTTTGAATTCTCTGGT+TGG | - | chr3.4:82761036-82761055 | MS.gene33514:intron | 30.0% |
| !! | ATATGCAATGGTAGTTTGTT+CGG | - | chr3.4:82762614-82762633 | MS.gene33514:CDS | 30.0% |
| !! | TAATTCAAGTTGATTCAGCA+TGG | + | chr3.4:82761163-82761182 | None:intergenic | 30.0% |
| !! | TTCTTATTGACTTGTTTCCT+CGG | + | chr3.4:82762169-82762188 | None:intergenic | 30.0% |
| !! | TTGAAGTTAAGCTTTTGGAA+TGG | + | chr3.4:82762335-82762354 | None:intergenic | 30.0% |
| !!! | GTGGAGTTATTTTAGCATTA+AGG | - | chr3.4:82762243-82762262 | MS.gene33514:CDS | 30.0% |
| AACAGAGAATGTTCTTGGAT+TGG | - | chr3.4:82762648-82762667 | MS.gene33514:CDS | 35.0% | |
| ACAGAGAATGTTCTTGGATT+GGG | - | chr3.4:82762649-82762668 | MS.gene33514:CDS | 35.0% | |
| AGTAGATTACTGAGAGACAA+AGG | + | chr3.4:82761069-82761088 | None:intergenic | 35.0% | |
| AGTTGTTGCTGATATCAAAC+AGG | - | chr3.4:82761388-82761407 | MS.gene33514:intron | 35.0% | |
| ATGTAAGGATTTGCAGTTGT+TGG | - | chr3.4:82761803-82761822 | MS.gene33514:CDS | 35.0% | |
| CATAAGGAATATCTCCACTA+AGG | + | chr3.4:82761557-82761576 | None:intergenic | 35.0% | |
| CTGTATGAAAATCAGCTTTC+TGG | - | chr3.4:82760892-82760911 | MS.gene33514:CDS | 35.0% | |
| CTTTCACTTGAAGACAAGTT+AGG | - | chr3.4:82763867-82763886 | MS.gene33514:CDS | 35.0% | |
| CTTTGAACAGTTTCCAATTG+TGG | + | chr3.4:82760566-82760585 | None:intergenic | 35.0% | |
| GAAAGCTCAAACTTCTCAAA+AGG | + | chr3.4:82761515-82761534 | None:intergenic | 35.0% | |
| GAAAGTTATCTGAACTGAGA+TGG | - | chr3.4:82760500-82760519 | MS.gene33514:intron | 35.0% | |
| GAATTTCTCCGAAAATACCT+TGG | + | chr3.4:82760687-82760706 | None:intergenic | 35.0% | |
| GATATCAGATTGTAAGGCTT+TGG | - | chr3.4:82760714-82760733 | MS.gene33514:CDS | 35.0% | |
| GATTCAAAACTGTTCAGCTT+TGG | - | chr3.4:82760858-82760877 | MS.gene33514:CDS | 35.0% | |
| GATTCAAACATAGTCGGAAA+AGG | - | chr3.4:82762383-82762402 | MS.gene33514:CDS | 35.0% | |
| GCAAGGTATAAGATCATACT+TGG | - | chr3.4:82762674-82762693 | MS.gene33514:CDS | 35.0% | |
| GCTGTTACATCTTTCATTGT+AGG | + | chr3.4:82763581-82763600 | None:intergenic | 35.0% | |
| GGAGATATTCCTTATGAGAT+AGG | - | chr3.4:82761561-82761580 | MS.gene33514:CDS | 35.0% | |
| GGATAAACCAAATAAAGGCA+TGG | - | chr3.4:82763637-82763656 | MS.gene33514:CDS | 35.0% | |
| GTAACAACCATGCCTTTATT+TGG | + | chr3.4:82763647-82763666 | None:intergenic | 35.0% | |
| TAGTTTCCTGAGACCATATT+TGG | - | chr3.4:82763076-82763095 | MS.gene33514:CDS | 35.0% | |
| TCACAGTTAGATAACTCTGT+TGG | + | chr3.4:82761285-82761304 | None:intergenic | 35.0% | |
| TCTCAGTAATCTACTCTCAT+TGG | - | chr3.4:82761074-82761093 | MS.gene33514:intron | 35.0% | |
| TGACATTGTCACAAAGTTGT+CGG | - | chr3.4:82762361-82762380 | MS.gene33514:CDS | 35.0% | |
| TGACTGCAATTAGAGTTTCT+TGG | + | chr3.4:82763197-82763216 | None:intergenic | 35.0% | |
| TGCAAGTAACCAATCTCATT+GGG | + | chr3.4:82761861-82761880 | None:intergenic | 35.0% | |
| TTAAGCAGAAACCTTATCAC+CGG | - | chr3.4:82761756-82761775 | MS.gene33514:CDS | 35.0% | |
| TTCACATGATCTTGAGAAAC+TGG | + | chr3.4:82763696-82763715 | None:intergenic | 35.0% | |
| TTCATTGTAGGTCTTTCTTC+TGG | + | chr3.4:82763569-82763588 | None:intergenic | 35.0% | |
| TTGCAAGTAACCAATCTCAT+TGG | + | chr3.4:82761862-82761881 | None:intergenic | 35.0% | |
| TTGTCGGATTCAAACATAGT+CGG | - | chr3.4:82762377-82762396 | MS.gene33514:CDS | 35.0% | |
| ! | AATGAGATTGGTTACTTGCA+AGG | - | chr3.4:82761861-82761880 | MS.gene33514:CDS | 35.0% |
| ! | ACTTGTTAATGCAAAGGTCA+GGG | + | chr3.4:82762127-82762146 | None:intergenic | 35.0% |
| ! | AGGAAATGACCAATTTTGCA+AGG | + | chr3.4:82762820-82762839 | None:intergenic | 35.0% |
| ! | CCCATTTTCTCTTCCAAATA+TGG | + | chr3.4:82763092-82763111 | None:intergenic | 35.0% |
| ! | CTAGTATACAAAGTACTACC+AGG | + | chr3.4:82763059-82763078 | None:intergenic | 35.0% |
| ! | CTCAAGTTTTTAAACTCACC+AGG | + | chr3.4:82762896-82762915 | None:intergenic | 35.0% |
| ! | GAAGCTTTTCTTGCAGATTT+TGG | - | chr3.4:82762794-82762813 | MS.gene33514:CDS | 35.0% |
| ! | TCTTGGAAGAATTTTGTGTC+AGG | + | chr3.4:82762077-82762096 | None:intergenic | 35.0% |
| !! | ACTGCAATAAGCTGTTTTGT+TGG | + | chr3.4:82762440-82762459 | None:intergenic | 35.0% |
| !! | TTATGGGAGCAATAGTTTTG+AGG | - | chr3.4:82762283-82762302 | MS.gene33514:CDS | 35.0% |
| !! | TTGAGTTGGAATTCTCTTAC+TGG | - | chr3.4:82761903-82761922 | MS.gene33514:CDS | 35.0% |
| !!! | AGATTTTGGCCTTGCAAAAT+TGG | - | chr3.4:82762808-82762827 | MS.gene33514:CDS | 35.0% |
| !!! | TAGTTTTGAGGAAGTGGAAA+TGG | - | chr3.4:82762295-82762314 | MS.gene33514:CDS | 35.0% |
| !!! | TGTAAGGCTTTGGTTTTTCT+TGG | - | chr3.4:82760724-82760743 | MS.gene33514:CDS | 35.0% |
| AAAACTCTTGGGAATGCTTC+CGG | + | chr3.4:82761706-82761725 | None:intergenic | 40.0% | |
| AACTCACTCTCTTCTATGCT+TGG | - | chr3.4:82761235-82761254 | MS.gene33514:intron | 40.0% | |
| AACTGATAACAGGATTCCAG+AGG | - | chr3.4:82763388-82763407 | MS.gene33514:CDS | 40.0% | |
| AAGAGTGATGTGTACAGCTA+TGG | - | chr3.4:82763329-82763348 | MS.gene33514:CDS | 40.0% | |
| AAGGCTAACAACATCTTGGT+AGG | - | chr3.4:82762761-82762780 | MS.gene33514:CDS | 40.0% | |
| AAGTCTTAACCTGATCAAGC+TGG | + | chr3.4:82761451-82761470 | None:intergenic | 40.0% | |
| AATTCGAATTCGTTACACGG+TGG | - | chr3.4:82760532-82760551 | MS.gene33514:intron | 40.0% | |
| ACAGGTACTCTCATAGTACT+TGG | - | chr3.4:82761993-82762012 | MS.gene33514:CDS | 40.0% | |
| ACTGATAACAGGATTCCAGA+GGG | - | chr3.4:82763389-82763408 | MS.gene33514:CDS | 40.0% | |
| AGCTTGATCAGGTTAAGACT+TGG | - | chr3.4:82761450-82761469 | MS.gene33514:CDS | 40.0% | |
| ATCATACTTGGAACAGCTCA+TGG | - | chr3.4:82762686-82762705 | MS.gene33514:CDS | 40.0% | |
| CAATGACTGAGGAATCAAAC+CGG | + | chr3.4:82761778-82761797 | None:intergenic | 40.0% | |
| CAGCAATGCTCAAAGAGATT+AGG | - | chr3.4:82763597-82763616 | MS.gene33514:CDS | 40.0% | |
| CAGTAATCTACTCTCATTGG+AGG | - | chr3.4:82761077-82761096 | MS.gene33514:intron | 40.0% | |
| CCAAGAACATTCTCTGTTCA+TGG | + | chr3.4:82762646-82762665 | None:intergenic | 40.0% | |
| CCATGAACAGAGAATGTTCT+TGG | - | chr3.4:82762643-82762662 | MS.gene33514:CDS | 40.0% | |
| CGTTAAGGCTAACAACATCT+TGG | - | chr3.4:82762757-82762776 | MS.gene33514:CDS | 40.0% | |
| CTATCTTACAACAAGCTCAC+AGG | - | chr3.4:82761975-82761994 | MS.gene33514:CDS | 40.0% | |
| CTGATATCAAACAGGCTTTC+AGG | - | chr3.4:82761396-82761415 | MS.gene33514:intron | 40.0% | |
| CTTGCAGTTACTGGAATTTC+TGG | - | chr3.4:82760748-82760767 | MS.gene33514:CDS | 40.0% | |
| CTTGGATCAAACAACCTTAC+TGG | - | chr3.4:82761468-82761487 | MS.gene33514:CDS | 40.0% | |
| GAACAGTTTCCAATTGTGGT+TGG | + | chr3.4:82760562-82760581 | None:intergenic | 40.0% | |
| GAATGGAACCAACTGATAAC+AGG | - | chr3.4:82763378-82763397 | MS.gene33514:CDS | 40.0% | |
| GACAAGTTTCCAACTGAACT+TGG | + | chr3.4:82760418-82760437 | None:intergenic | 40.0% | |
| GCACAGTTACCTATCTCATA+AGG | + | chr3.4:82761573-82761592 | None:intergenic | 40.0% | |
| GCTGTAAACAAATCTCTCTC+TGG | + | chr3.4:82762497-82762516 | None:intergenic | 40.0% | |
| GGTATGATTCCTGGAGAAAT+AGG | - | chr3.4:82760622-82760641 | MS.gene33514:CDS | 40.0% | |
| GGTCAAATTCCGCAAGAAAT+AGG | - | chr3.4:82761489-82761508 | MS.gene33514:CDS | 40.0% | |
| GGTGGTTCTTCATTCTTTAC+TGG | + | chr3.4:82762476-82762495 | None:intergenic | 40.0% | |
| GGTTCTATTCCCAATGAGAT+TGG | - | chr3.4:82761849-82761868 | MS.gene33514:CDS | 40.0% | |
| GGTTTGATTCCTCAGTCATT+GGG | - | chr3.4:82761777-82761796 | MS.gene33514:CDS | 40.0% | |
| GTAAACAAATCTCTCTCTGG+TGG | + | chr3.4:82762494-82762513 | None:intergenic | 40.0% | |
| GTACAGTTTCCAAGACTTTC+TGG | + | chr3.4:82760997-82761016 | None:intergenic | 40.0% | |
| GTTTGATTCCTCAGTCATTG+GGG | - | chr3.4:82761778-82761797 | MS.gene33514:CDS | 40.0% | |
| TCAGTCATTGGGGATATGTA+AGG | - | chr3.4:82761788-82761807 | MS.gene33514:CDS | 40.0% | |
| TCTCTTCCAAATATGGTCTC+AGG | + | chr3.4:82763085-82763104 | None:intergenic | 40.0% | |
| TCTTATGGATACATAGCTCC+TGG | - | chr3.4:82762875-82762894 | MS.gene33514:CDS | 40.0% | |
| TCTTGAGATGCTAACTGGAA+TGG | - | chr3.4:82763361-82763380 | MS.gene33514:CDS | 40.0% | |
| TGGAGAAATAGGACAGTTGA+AGG | - | chr3.4:82760633-82760652 | MS.gene33514:CDS | 40.0% | |
| TTACATATCCCCAATGACTG+AGG | + | chr3.4:82761789-82761808 | None:intergenic | 40.0% | |
| TTGAGGAAGTGGAAATGGAA+TGG | - | chr3.4:82762300-82762319 | MS.gene33514:CDS | 40.0% | |
| TTTCTTGGACTTGCAGTTAC+TGG | - | chr3.4:82760739-82760758 | MS.gene33514:CDS | 40.0% | |
| ! | AATTTGGAATTGGACCAGTG+AGG | + | chr3.4:82761341-82761360 | None:intergenic | 40.0% |
| ! | CACTTGTTAATGCAAAGGTC+AGG | + | chr3.4:82762128-82762147 | None:intergenic | 40.0% |
| ! | CTCAAAAGGCCTATTTCTTG+CGG | + | chr3.4:82761501-82761520 | None:intergenic | 40.0% |
| ! | GATGAGTTCTAATTCGACGT+CGG | - | chr3.4:82763158-82763177 | MS.gene33514:CDS | 40.0% |
| ! | GATTGGTTACTTGCAAGGAT+TGG | - | chr3.4:82761866-82761885 | MS.gene33514:CDS | 40.0% |
| ! | GTTTCCAAGACTTTCTGGAA+TGG | + | chr3.4:82760992-82761011 | None:intergenic | 40.0% |
| ! | TCTGGAATCCTGTTATCAGT+TGG | + | chr3.4:82763389-82763408 | None:intergenic | 40.0% |
| ! | TTCAACTGTCCTATTTCTCC+AGG | + | chr3.4:82760634-82760653 | None:intergenic | 40.0% |
| !! | CTGTGAGCTTGTTGTAAGAT+AGG | + | chr3.4:82761977-82761996 | None:intergenic | 40.0% |
| !!! | ATGAACTGCTGCTTTTGGAT+TGG | + | chr3.4:82763669-82763688 | None:intergenic | 40.0% |
| !!! | CTTTTAGGATGCTGTGACAA+CGG | - | chr3.4:82762563-82762582 | MS.gene33514:CDS | 40.0% |
| !!! | GAACAATGAACTGCTGCTTT+TGG | + | chr3.4:82763674-82763693 | None:intergenic | 40.0% |
| !!! | GAACAGTTTTGAATCTCCAG+TGG | + | chr3.4:82760853-82760872 | None:intergenic | 40.0% |
| !!! | GAGCAATAGTTTTGAGGAAG+TGG | - | chr3.4:82762289-82762308 | MS.gene33514:CDS | 40.0% |
| AAATTCCACCGGATATAGGC+AGG | - | chr3.4:82761421-82761440 | MS.gene33514:CDS | 45.0% | |
| AATGCAAAGGTCAGGGTTAC+CGG | + | chr3.4:82762120-82762139 | None:intergenic | 45.0% | |
| ACGTGTTATGGGGAACTTGA+AGG | - | chr3.4:82761212-82761231 | MS.gene33514:intron | 45.0% | |
| ATGCAGCAGAAGGTAGATCT+TGG | + | chr3.4:82762094-82762113 | None:intergenic | 45.0% | |
| CACGTAGTTGCAGGTTCTTA+TGG | - | chr3.4:82762860-82762879 | MS.gene33514:CDS | 45.0% | |
| CAGGAATCATACCAGAAAGC+TGG | + | chr3.4:82760615-82760634 | None:intergenic | 45.0% | |
| CATAACACGTGGAATCTCTC+CGG | + | chr3.4:82761202-82761221 | None:intergenic | 45.0% | |
| CATACAAGTGGAAATCTCCG+AGG | - | chr3.4:82762149-82762168 | MS.gene33514:CDS | 45.0% | |
| CGGTTTGATTCCTCAGTCAT+TGG | - | chr3.4:82761776-82761795 | MS.gene33514:CDS | 45.0% | |
| CTGTGGCAGAACAATTTCAC+TGG | - | chr3.4:82760964-82760983 | MS.gene33514:CDS | 45.0% | |
| CTGTTTGACAACCAGCTTTC+TGG | - | chr3.4:82760601-82760620 | MS.gene33514:CDS | 45.0% | |
| CTTGCGGAATTTGACCAGTA+AGG | + | chr3.4:82761485-82761504 | None:intergenic | 45.0% | |
| CTTTCACACAACTTCCTCAC+TGG | - | chr3.4:82761324-82761343 | MS.gene33514:intron | 45.0% | |
| GAGAGATTCCACGTGTTATG+GGG | - | chr3.4:82761202-82761221 | MS.gene33514:intron | 45.0% | |
| GAGGAATCAAACCGGTGATA+AGG | + | chr3.4:82761770-82761789 | None:intergenic | 45.0% | |
| GCTTGGCAGAATCAACTTCA+TGG | - | chr3.4:82761252-82761271 | MS.gene33514:intron | 45.0% | |
| GGAACCATTCCAGAAAGTCT+TGG | - | chr3.4:82760985-82761004 | MS.gene33514:intron | 45.0% | |
| GGAGAGATTCCACGTGTTAT+GGG | - | chr3.4:82761201-82761220 | MS.gene33514:intron | 45.0% | |
| GGGTGCTCACATTGTAACAT+GGG | - | chr3.4:82763409-82763428 | MS.gene33514:CDS | 45.0% | |
| GGTGGAATTCCAACCACAAT+TGG | - | chr3.4:82760550-82760569 | MS.gene33514:intron | 45.0% | |
| GTAAGCTCGCCAAAACTCTT+GGG | + | chr3.4:82761717-82761736 | None:intergenic | 45.0% | |
| GTAGGTCTTTCTTCTGGTGA+TGG | + | chr3.4:82763563-82763582 | None:intergenic | 45.0% | |
| GTGAGATTCCAGCAAGCATA+GGG | - | chr3.4:82760770-82760789 | MS.gene33514:CDS | 45.0% | |
| GTGCTTCTTGAGATGCTAAC+TGG | - | chr3.4:82763356-82763375 | MS.gene33514:CDS | 45.0% | |
| TGAGATTCCAGCAAGCATAG+GGG | - | chr3.4:82760771-82760790 | MS.gene33514:CDS | 45.0% | |
| TGCCTATATCCGGTGGAATT+TGG | + | chr3.4:82761422-82761441 | None:intergenic | 45.0% | |
| TGTAAGCTCGCCAAAACTCT+TGG | + | chr3.4:82761718-82761737 | None:intergenic | 45.0% | |
| TTCAGACGCTTGGATCGATA+CGG | - | chr3.4:82762522-82762541 | MS.gene33514:CDS | 45.0% | |
| ! | ACTTCTGCAGTTGTCACTTG+TGG | - | chr3.4:82762224-82762243 | MS.gene33514:CDS | 45.0% |
| ! | AGGGTGCTCACATTGTAACA+TGG | - | chr3.4:82763408-82763427 | MS.gene33514:CDS | 45.0% |
| ! | CAGCTTTCTGGTATGATTCC+TGG | - | chr3.4:82760613-82760632 | MS.gene33514:CDS | 45.0% |
| ! | TGTTCTTGGATTGGGATGCA+AGG | - | chr3.4:82762657-82762676 | MS.gene33514:CDS | 45.0% |
| ! | TTCAAGTTCCCCATAACACG+TGG | + | chr3.4:82761213-82761232 | None:intergenic | 45.0% |
| !! | GGCGGAAACCAAGGTATTTT+CGG | - | chr3.4:82760676-82760695 | MS.gene33514:CDS | 45.0% |
| !!! | GGAAGCATTCCCAAGAGTTT+TGG | - | chr3.4:82761705-82761724 | MS.gene33514:CDS | 45.0% |
| AATCGTCCATCGCGACGTTA+AGG | - | chr3.4:82762742-82762761 | MS.gene33514:CDS | 50.0% | |
| ACAGCAGAAGTTCAGACGCT+TGG | - | chr3.4:82762512-82762531 | MS.gene33514:CDS | 50.0% | |
| CACTCTCTTGAGGCTTTGCA+TGG | + | chr3.4:82760941-82760960 | None:intergenic | 50.0% | |
| CCAGAGATGCTTCAAGTGCT+AGG | - | chr3.4:82763515-82763534 | MS.gene33514:CDS | 50.0% | |
| CGGAGAGATTCCACGTGTTA+TGG | - | chr3.4:82761200-82761219 | MS.gene33514:intron | 50.0% | |
| CTACCTTCTGCTGCATTTGC+CGG | - | chr3.4:82762098-82762117 | MS.gene33514:CDS | 50.0% | |
| GCTTTCAGGCCAAATTCCAC+CGG | - | chr3.4:82761410-82761429 | MS.gene33514:CDS | 50.0% | |
| GGCCAAATTCCACCGGATAT+AGG | - | chr3.4:82761417-82761436 | MS.gene33514:CDS | 50.0% | |
| GGTGAGATTCCAGCAAGCAT+AGG | - | chr3.4:82760769-82760788 | MS.gene33514:CDS | 50.0% | |
| GTCTACACAGCTCATCTCAC+AGG | - | chr3.4:82760820-82760839 | MS.gene33514:CDS | 50.0% | |
| GTTACAATGTGAGCACCCTC+TGG | + | chr3.4:82763407-82763426 | None:intergenic | 50.0% | |
| TCTCACAGGTCGAATTCCAC+TGG | - | chr3.4:82760834-82760853 | MS.gene33514:CDS | 50.0% | |
| TTAACGTCGCGATGGACGAT+TGG | + | chr3.4:82762743-82762762 | None:intergenic | 50.0% | |
| TTACCGGCAAATGCAGCAGA+AGG | + | chr3.4:82762104-82762123 | None:intergenic | 50.0% | |
| ! | CCTAGCACTTGAAGCATCTC+TGG | + | chr3.4:82763518-82763537 | None:intergenic | 50.0% |
| !! | ATAGTCGGAAAAGGCGTCTC+AGG | - | chr3.4:82762392-82762411 | MS.gene33514:CDS | 50.0% |
| !! | TGTTAGCCTTAACGTCGCGA+TGG | + | chr3.4:82762751-82762770 | None:intergenic | 50.0% |
| AGAACCTGCAACTACGTGCG+AGG | + | chr3.4:82762858-82762877 | None:intergenic | 55.0% | |
| CTGGTGCACCTGCCTATATC+CGG | + | chr3.4:82761432-82761451 | None:intergenic | 55.0% | |
| GCCACAGCAACACTCTCTTG+AGG | + | chr3.4:82760951-82760970 | None:intergenic | 55.0% | |
| TGAAGCTCCCCTATGCTTGC+TGG | + | chr3.4:82760781-82760800 | None:intergenic | 55.0% | |
| !! | GCCTCAAGAGAGTGTTGCTG+TGG | - | chr3.4:82760947-82760966 | MS.gene33514:CDS | 55.0% |
| ACGTCGCGATGGACGATTGG+AGG | + | chr3.4:82762740-82762759 | None:intergenic | 60.0% | |
| AGAGCCTCGCACGTAGTTGC+AGG | - | chr3.4:82762851-82762870 | MS.gene33514:CDS | 60.0% | |
| CGAGGCTCTTGCACACTCTG+AGG | + | chr3.4:82762840-82762859 | None:intergenic | 60.0% | |
| CGTCGCGATGGACGATTGGA+GGG | + | chr3.4:82762739-82762758 | None:intergenic | 60.0% | |
| CTTGAATCGCTGCGAGCTGG+CGG | - | chr3.4:82760658-82760677 | MS.gene33514:CDS | 60.0% | |
| GCAGGTGCACCAGCTTGATC+AGG | - | chr3.4:82761439-82761458 | MS.gene33514:CDS | 60.0% | |
| GCTCTTGAATCGCTGCGAGC+TGG | - | chr3.4:82760655-82760674 | MS.gene33514:CDS | 60.0% | |
| GTGCACCTGCCTATATCCGG+TGG | + | chr3.4:82761429-82761448 | None:intergenic | 60.0% | |
| CTGCGAGCTGGCGGAAACCA+AGG | - | chr3.4:82760667-82760686 | MS.gene33514:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 82760407 | 82763888 | 82760407 | ID=MS.gene33514 |
| chr3.4 | mRNA | 82760407 | 82763888 | 82760407 | ID=MS.gene33514.t1;Parent=MS.gene33514 |
| chr3.4 | exon | 82761399 | 82763888 | 82761399 | ID=MS.gene33514.t1.exon1;Parent=MS.gene33514.t1 |
| chr3.4 | CDS | 82761399 | 82763888 | 82761399 | ID=cds.MS.gene33514.t1;Parent=MS.gene33514.t1 |
| chr3.4 | exon | 82760585 | 82760995 | 82760585 | ID=MS.gene33514.t1.exon2;Parent=MS.gene33514.t1 |
| chr3.4 | CDS | 82760585 | 82760995 | 82760585 | ID=cds.MS.gene33514.t1;Parent=MS.gene33514.t1 |
| chr3.4 | exon | 82760407 | 82760435 | 82760407 | ID=MS.gene33514.t1.exon3;Parent=MS.gene33514.t1 |
| chr3.4 | CDS | 82760407 | 82760435 | 82760407 | ID=cds.MS.gene33514.t1;Parent=MS.gene33514.t1 |
| Gene Sequence |
| Protein sequence |
