Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36242.t1 | XP_003597838.1 | 96.8 | 158 | 5 | 0 | 1 | 158 | 1 | 158 | 3.90E-80 | 307.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36242.t1 | Q8LBK6 | 63.4 | 164 | 54 | 3 | 1 | 158 | 5 | 168 | 1.0e-52 | 207.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36242.t1 | G7IMH4 | 96.8 | 158 | 5 | 0 | 1 | 158 | 1 | 158 | 2.8e-80 | 307.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049230 | MS.gene36242 | 0.839581 | 1.45E-57 | -1.69E-46 |
| MS.gene049378 | MS.gene36242 | 0.826259 | 2.99E-54 | -1.69E-46 |
| MS.gene049669 | MS.gene36242 | 0.804787 | 1.83E-49 | -1.69E-46 |
| MS.gene04984 | MS.gene36242 | 0.825534 | 4.45E-54 | -1.69E-46 |
| MS.gene050227 | MS.gene36242 | 0.815175 | 1.06E-51 | -1.69E-46 |
| MS.gene050228 | MS.gene36242 | 0.804778 | 1.83E-49 | -1.69E-46 |
| MS.gene050277 | MS.gene36242 | 0.801484 | 8.81E-49 | -1.69E-46 |
| MS.gene050303 | MS.gene36242 | 0.82821 | 1.02E-54 | -1.69E-46 |
| MS.gene050623 | MS.gene36242 | -0.814764 | 1.30E-51 | -1.69E-46 |
| MS.gene050719 | MS.gene36242 | 0.828235 | 1.01E-54 | -1.69E-46 |
| MS.gene050721 | MS.gene36242 | 0.829879 | 4.02E-55 | -1.69E-46 |
| MS.gene050724 | MS.gene36242 | 0.809903 | 1.50E-50 | -1.69E-46 |
| MS.gene051452 | MS.gene36242 | 0.846403 | 2.22E-59 | -1.69E-46 |
| MS.gene051655 | MS.gene36242 | 0.800602 | 1.33E-48 | -1.69E-46 |
| MS.gene051757 | MS.gene36242 | 0.834726 | 2.54E-56 | -1.69E-46 |
| MS.gene052012 | MS.gene36242 | 0.801323 | 9.51E-49 | -1.69E-46 |
| MS.gene052176 | MS.gene36242 | 0.830735 | 2.48E-55 | -1.69E-46 |
| MS.gene052286 | MS.gene36242 | 0.802463 | 5.54E-49 | -1.69E-46 |
| MS.gene052376 | MS.gene36242 | 0.8124 | 4.32E-51 | -1.69E-46 |
| MS.gene052426 | MS.gene36242 | 0.809519 | 1.82E-50 | -1.69E-46 |
| MS.gene052826 | MS.gene36242 | 0.800516 | 1.39E-48 | -1.69E-46 |
| MS.gene052954 | MS.gene36242 | 0.803645 | 3.16E-49 | -1.69E-46 |
| MS.gene053006 | MS.gene36242 | 0.807291 | 5.43E-50 | -1.69E-46 |
| MS.gene053216 | MS.gene36242 | 0.835744 | 1.40E-56 | -1.69E-46 |
| MS.gene055441 | MS.gene36242 | 0.837312 | 5.60E-57 | -1.69E-46 |
| MS.gene055603 | MS.gene36242 | 0.821382 | 4.16E-53 | -1.69E-46 |
| MS.gene055623 | MS.gene36242 | 0.803225 | 3.86E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene36242 | 0.803671 | 3.12E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene36242 | 0.803153 | 3.99E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene36242 | 0.810284 | 1.24E-50 | -1.69E-46 |
| MS.gene056849 | MS.gene36242 | 0.822422 | 2.39E-53 | -1.69E-46 |
| MS.gene056986 | MS.gene36242 | 0.822949 | 1.80E-53 | -1.69E-46 |
| MS.gene057079 | MS.gene36242 | 0.828678 | 7.87E-55 | -1.69E-46 |
| MS.gene057194 | MS.gene36242 | 0.806735 | 7.12E-50 | -1.69E-46 |
| MS.gene057360 | MS.gene36242 | 0.801086 | 1.06E-48 | -1.69E-46 |
| MS.gene05795 | MS.gene36242 | 0.838361 | 3.01E-57 | -1.69E-46 |
| MS.gene058084 | MS.gene36242 | 0.808406 | 3.15E-50 | -1.69E-46 |
| MS.gene058146 | MS.gene36242 | 0.812113 | 4.99E-51 | -1.69E-46 |
| MS.gene058238 | MS.gene36242 | 0.819893 | 9.14E-53 | -1.69E-46 |
| MS.gene058498 | MS.gene36242 | 0.805449 | 1.33E-49 | -1.69E-46 |
| MS.gene058500 | MS.gene36242 | 0.801369 | 9.30E-49 | -1.69E-46 |
| MS.gene059830 | MS.gene36242 | 0.837131 | 6.23E-57 | -1.69E-46 |
| MS.gene06010 | MS.gene36242 | 0.800397 | 1.47E-48 | -1.69E-46 |
| MS.gene06011 | MS.gene36242 | 0.816757 | 4.69E-52 | -1.69E-46 |
| MS.gene060297 | MS.gene36242 | 0.846382 | 2.25E-59 | -1.69E-46 |
| MS.gene060586 | MS.gene36242 | 0.86661 | 2.51E-65 | -1.69E-46 |
| MS.gene060879 | MS.gene36242 | 0.827883 | 1.22E-54 | -1.69E-46 |
| MS.gene060998 | MS.gene36242 | 0.806077 | 9.80E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36242.t1 | MTR_2g103130 | 96.835 | 158 | 5 | 0 | 1 | 158 | 1 | 158 | 4.17e-114 | 320 |
| MS.gene36242.t1 | MTR_4g088905 | 44.715 | 123 | 65 | 1 | 34 | 153 | 261 | 383 | 1.24e-29 | 112 |
| MS.gene36242.t1 | MTR_4g088905 | 45.545 | 101 | 55 | 0 | 53 | 153 | 154 | 254 | 1.59e-28 | 109 |
| MS.gene36242.t1 | MTR_4g088905 | 46.739 | 92 | 48 | 1 | 63 | 153 | 400 | 491 | 4.63e-25 | 100 |
| MS.gene36242.t1 | MTR_7g079520 | 42.105 | 95 | 55 | 0 | 55 | 149 | 79 | 173 | 9.23e-27 | 99.8 |
| MS.gene36242.t1 | MTR_4g016930 | 36.458 | 96 | 58 | 1 | 55 | 147 | 196 | 291 | 5.54e-18 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36242.t1 | AT3G15660 | 63.415 | 164 | 54 | 3 | 1 | 158 | 5 | 168 | 2.42e-73 | 217 |
| MS.gene36242.t1 | AT3G15660 | 63.415 | 164 | 54 | 3 | 1 | 158 | 5 | 168 | 2.42e-73 | 217 |
| MS.gene36242.t1 | AT4G04950 | 46.535 | 101 | 54 | 0 | 54 | 154 | 152 | 252 | 1.43e-30 | 115 |
| MS.gene36242.t1 | AT4G04950 | 46.226 | 106 | 55 | 1 | 50 | 153 | 276 | 381 | 3.34e-27 | 105 |
| MS.gene36242.t1 | AT4G04950 | 45.000 | 100 | 55 | 0 | 54 | 153 | 389 | 488 | 3.36e-26 | 103 |
| MS.gene36242.t1 | AT3G54900 | 41.525 | 118 | 64 | 2 | 42 | 155 | 55 | 171 | 5.70e-29 | 105 |
| MS.gene36242.t1 | AT2G38270 | 41.000 | 100 | 56 | 1 | 55 | 151 | 193 | 292 | 2.90e-21 | 87.8 |
Find 26 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAACTAGTTCCTGTTATTA+TGG | 0.213298 | 2.1:+2521664 | MS.gene36242:CDS |
| AAAATGTTCCTAGCACTTAA+AGG | 0.239296 | 2.1:-2523263 | None:intergenic |
| TTCATTAAGGGAGAGTTTAT+TGG | 0.294164 | 2.1:+2524126 | MS.gene36242:CDS |
| ACTAATAAAATTGAGAATTC+TGG | 0.294307 | 2.1:+2521745 | MS.gene36242:CDS |
| CCCTTCATGTAAATCATAAC+AGG | 0.387480 | 2.1:-2521908 | None:intergenic |
| AATCCACACTGTGGGAAATC+AGG | 0.415306 | 2.1:-2521935 | None:intergenic |
| GTATCTCATTCCATAATAAC+AGG | 0.425034 | 2.1:-2521674 | None:intergenic |
| TCCTGTTATGATTTACATGA+AGG | 0.434713 | 2.1:+2521907 | MS.gene36242:CDS |
| TTTGTCAAGTATTATTGAGC+AGG | 0.435419 | 2.1:+2521774 | MS.gene36242:CDS |
| CAGATGTTCCTTTAAGTGCT+AGG | 0.438137 | 2.1:+2523255 | MS.gene36242:intron |
| CTTGTAGAGTGGTGAGTTGA+AGG | 0.456905 | 2.1:+2524253 | MS.gene36242:intron |
| ATTAAGGGAGAGTTTATTGG+TGG | 0.524548 | 2.1:+2524129 | MS.gene36242:CDS |
| ATGAAAACTTGTGGAAATGT+TGG | 0.528223 | 2.1:-2524108 | None:intergenic |
| CCTGTTATGATTTACATGAA+GGG | 0.540704 | 2.1:+2521908 | MS.gene36242:CDS |
| AGCGATTCCCTTGAAAAGAA+TGG | 0.556100 | 2.1:-2520326 | None:intergenic |
| AAAATGCTGTAAAAGCCTAC+AGG | 0.564696 | 2.1:+2523303 | MS.gene36242:CDS |
| TATTGTTCTTAGTATGCACC+AGG | 0.565729 | 2.1:+2524158 | MS.gene36242:CDS |
| TGGAATGAGATACACAACTA+AGG | 0.585500 | 2.1:+2521684 | MS.gene36242:CDS |
| CTTGAAAAGAATGGTCGCCA+TGG | 0.597220 | 2.1:-2520317 | None:intergenic |
| TAATAATGTACAGGATGTCA+AGG | 0.615496 | 2.1:+2521880 | MS.gene36242:intron |
| GAGAACTAAATCCACACTGT+GGG | 0.625350 | 2.1:-2521943 | None:intergenic |
| TCTCCCTTAATGAAAACTTG+TGG | 0.625424 | 2.1:-2524117 | None:intergenic |
| GTACCTGATTTCCCACAGTG+TGG | 0.627551 | 2.1:+2521932 | MS.gene36242:CDS |
| GGTTGGAAAGCTTACACGTG+TGG | 0.644303 | 2.1:-2520362 | None:intergenic |
| TTTGAAGTCATCATGTGTGT+CGG | 0.650291 | 2.1:-2521719 | None:intergenic |
| AGAGAACTAAATCCACACTG+TGG | 0.712972 | 2.1:-2521944 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAAAAAAAATTAAGTTAA+AGG | + | chr2.1:2523420-2523439 | MS.gene36242:intron | 10.0% |
| !!! | AATGTTAATTTTAAAAAACT+AGG | - | chr2.1:2523389-2523408 | None:intergenic | 10.0% |
| !!! | CTTTATTTTATATTTTGTTA+TGG | - | chr2.1:2520752-2520771 | None:intergenic | 10.0% |
| !! | AAAAAAAGAAGAAGAAAATT+AGG | - | chr2.1:2520399-2520418 | None:intergenic | 15.0% |
| !! | AAAAAAGAAGAAGAAAATTA+GGG | - | chr2.1:2520398-2520417 | None:intergenic | 15.0% |
| !! | GAATTATGTTAATGTTAAAA+TGG | + | chr2.1:2520567-2520586 | MS.gene36242:intron | 15.0% |
| !! | GGTAAATTTAAAAAGAAAAA+GGG | - | chr2.1:2521187-2521206 | None:intergenic | 15.0% |
| !! | TGGTAAATTTAAAAAGAAAA+AGG | - | chr2.1:2521188-2521207 | None:intergenic | 15.0% |
| !! | TTTATTTATCAGATTGAAAT+GGG | + | chr2.1:2520518-2520537 | MS.gene36242:intron | 15.0% |
| !!! | GAAACTAAAACAATTTTAAA+GGG | + | chr2.1:2522985-2523004 | MS.gene36242:intron | 15.0% |
| !!! | GTTAAAGTTTTAAAACAATA+TGG | + | chr2.1:2521971-2521990 | MS.gene36242:CDS | 15.0% |
| !!! | TCAATTGTTTAATTTACTTA+TGG | + | chr2.1:2523109-2523128 | MS.gene36242:intron | 15.0% |
| !!! | TTTTAGTGTTATGATTTAAA+TGG | + | chr2.1:2521561-2521580 | MS.gene36242:intron | 15.0% |
| !!! | TTTTATTTATCAGATTGAAA+TGG | + | chr2.1:2520517-2520536 | MS.gene36242:intron | 15.0% |
| !! | AATGTAAAGTGATTTATGTT+TGG | + | chr2.1:2520902-2520921 | MS.gene36242:intron | 20.0% |
| !! | ACTAATAAAATTGAGAATTC+TGG | + | chr2.1:2521745-2521764 | MS.gene36242:CDS | 20.0% |
| !! | AGGGAAAAGTAAATTATAAT+TGG | - | chr2.1:2524008-2524027 | None:intergenic | 20.0% |
| !! | ATAATATGCAATTATGCTAA+AGG | - | chr2.1:2520720-2520739 | None:intergenic | 20.0% |
| !! | CAATTATTAAGCTGTTAAAA+GGG | - | chr2.1:2524027-2524046 | None:intergenic | 20.0% |
| !! | TCAATTATTAAGCTGTTAAA+AGG | - | chr2.1:2524028-2524047 | None:intergenic | 20.0% |
| !! | TCTGATCTTCATAATATATT+TGG | - | chr2.1:2523543-2523562 | None:intergenic | 20.0% |
| !! | TTATGTTAATGTTAAAATGG+AGG | + | chr2.1:2520570-2520589 | MS.gene36242:intron | 20.0% |
| !!! | AAAACACATTTGAAACTTAA+AGG | - | chr2.1:2523088-2523107 | None:intergenic | 20.0% |
| !!! | AAATCTTGAAAAGCTTTTTT+AGG | + | chr2.1:2520664-2520683 | MS.gene36242:intron | 20.0% |
| !!! | AGAATTTTGATATCCTTTAA+TGG | + | chr2.1:2523657-2523676 | MS.gene36242:intron | 20.0% |
| !!! | CTTTATTTTATCTTTTGCTA+CGG | - | chr2.1:2521315-2521334 | None:intergenic | 20.0% |
| !!! | GAATTCTCAATTTTATTAGT+TGG | - | chr2.1:2521745-2521764 | None:intergenic | 20.0% |
| !!! | GGAAACTAAAACAATTTTAA+AGG | + | chr2.1:2522984-2523003 | MS.gene36242:intron | 20.0% |
| !!! | TATTTTCTTTGCATTTAAAG+TGG | + | chr2.1:2523912-2523931 | MS.gene36242:intron | 20.0% |
| !!! | TTTGGTTTTATTATGTTGAA+TGG | + | chr2.1:2522913-2522932 | MS.gene36242:intron | 20.0% |
| ! | AAACTATACGAGAAACTATT+AGG | + | chr2.1:2522717-2522736 | MS.gene36242:intron | 25.0% |
| ! | ACACGATTGATATTTGAAAA+TGG | - | chr2.1:2523636-2523655 | None:intergenic | 25.0% |
| ! | ATAATGTTTGTAGAAAAGTG+GGG | - | chr2.1:2522470-2522489 | None:intergenic | 25.0% |
| ! | CATAATGTTTGTAGAAAAGT+GGG | - | chr2.1:2522471-2522490 | None:intergenic | 25.0% |
| ! | GATCATTATGATTAAATTGC+AGG | - | chr2.1:2523029-2523048 | None:intergenic | 25.0% |
| ! | GGTGTGAAATATTGTTAAAT+AGG | - | chr2.1:2524233-2524252 | None:intergenic | 25.0% |
| ! | TATTCACAGTAAATTTCTGT+AGG | - | chr2.1:2523135-2523154 | None:intergenic | 25.0% |
| ! | TCTAACTTGAAGCTAAAATT+TGG | - | chr2.1:2520996-2521015 | None:intergenic | 25.0% |
| ! | TCTGATAAATAAAACTTGCA+AGG | - | chr2.1:2520511-2520530 | None:intergenic | 25.0% |
| ! | TTAATGGCTATGAAATTCAA+TGG | + | chr2.1:2523673-2523692 | MS.gene36242:intron | 25.0% |
| ! | TTGAATTTCATAGCCATTAA+AGG | - | chr2.1:2523673-2523692 | None:intergenic | 25.0% |
| !! | ATTGTGTTTTCTGTATGTAA+CGG | + | chr2.1:2521613-2521632 | MS.gene36242:intron | 25.0% |
| !! | ATTTCCACAAGTTTTCATTA+AGG | + | chr2.1:2524113-2524132 | MS.gene36242:CDS | 25.0% |
| !! | GTTTATGTAATCTCATGTTT+TGG | + | chr2.1:2522895-2522914 | MS.gene36242:intron | 25.0% |
| !! | TTTCCACAAGTTTTCATTAA+GGG | + | chr2.1:2524114-2524133 | MS.gene36242:CDS | 25.0% |
| !! | TTTTTCCATTTTACGGTATT+GGG | + | chr2.1:2520446-2520465 | MS.gene36242:intron | 25.0% |
| !!! | AGAAAATTAGGGTTTGTTTT+AGG | - | chr2.1:2520387-2520406 | None:intergenic | 25.0% |
| !!! | AGAATTGATTTTGACATGTT+TGG | - | chr2.1:2521061-2521080 | None:intergenic | 25.0% |
| !!! | ATTTTAAAGGGTTAGTACAT+AGG | + | chr2.1:2522997-2523016 | MS.gene36242:intron | 25.0% |
| !!! | GAAAATTAGGGTTTGTTTTA+GGG | - | chr2.1:2520386-2520405 | None:intergenic | 25.0% |
| !!! | GTATGTTCAGTTTCATTTTT+TGG | - | chr2.1:2521111-2521130 | None:intergenic | 25.0% |
| !!! | TAGAAAAGTTGGTAGAAAAT+AGG | - | chr2.1:2522434-2522453 | None:intergenic | 25.0% |
| AAAATGTTCCTAGCACTTAA+AGG | - | chr2.1:2523266-2523285 | None:intergenic | 30.0% | |
| AAATTGATCAACTCTTGCAA+TGG | - | chr2.1:2524191-2524210 | None:intergenic | 30.0% | |
| AACCATTAGAAAGGATTTAG+AGG | - | chr2.1:2522292-2522311 | None:intergenic | 30.0% | |
| AATAAGGAGAATAGATCAGA+TGG | + | chr2.1:2522655-2522674 | MS.gene36242:intron | 30.0% | |
| AATTGATCAACTCTTGCAAT+GGG | - | chr2.1:2524190-2524209 | None:intergenic | 30.0% | |
| ACATATATCAACAACGTACA+AGG | - | chr2.1:2523851-2523870 | None:intergenic | 30.0% | |
| ACATGAGATTACATAAACAC+AGG | - | chr2.1:2522893-2522912 | None:intergenic | 30.0% | |
| ATATAATTTCTCAGGTAGCA+AGG | - | chr2.1:2522025-2522044 | None:intergenic | 30.0% | |
| ATGAAAACTTGTGGAAATGT+TGG | - | chr2.1:2524111-2524130 | None:intergenic | 30.0% | |
| ATGATCTTCAGATTATTGAC+AGG | - | chr2.1:2523707-2523726 | None:intergenic | 30.0% | |
| CAATTCTGTAAGTTTCATCA+TGG | + | chr2.1:2520865-2520884 | MS.gene36242:intron | 30.0% | |
| CCATAATGTTTGTAGAAAAG+TGG | - | chr2.1:2522472-2522491 | None:intergenic | 30.0% | |
| CCTGTTATGATTTACATGAA+GGG | + | chr2.1:2521908-2521927 | MS.gene36242:CDS | 30.0% | |
| CTAACTAGTTCCTGTTATTA+TGG | + | chr2.1:2521664-2521683 | MS.gene36242:CDS | 30.0% | |
| CTACATGAGAATTCTATGAT+GGG | + | chr2.1:2521820-2521839 | MS.gene36242:intron | 30.0% | |
| GAAATTATATCCTCTGAATC+TGG | + | chr2.1:2522035-2522054 | MS.gene36242:intron | 30.0% | |
| GAGGAAAATGAAGAAAAGAA+AGG | - | chr2.1:2520475-2520494 | None:intergenic | 30.0% | |
| GATTTCAACATATCTAGTTG+TGG | + | chr2.1:2523797-2523816 | MS.gene36242:intron | 30.0% | |
| GCTCTATCAAAAACCATATT+TGG | + | chr2.1:2522252-2522271 | MS.gene36242:intron | 30.0% | |
| GTATCTCATTCCATAATAAC+AGG | - | chr2.1:2521677-2521696 | None:intergenic | 30.0% | |
| GTCTCATTCATATTCTACTA+AGG | + | chr2.1:2521210-2521229 | MS.gene36242:intron | 30.0% | |
| GTTAGAATCAATTCTTCTAG+AGG | + | chr2.1:2521010-2521029 | MS.gene36242:intron | 30.0% | |
| TAACCTGCACAAACTTATAT+AGG | + | chr2.1:2523056-2523075 | MS.gene36242:intron | 30.0% | |
| TAACTTATGAAGACAGCTTA+TGG | - | chr2.1:2521358-2521377 | None:intergenic | 30.0% | |
| TAATAATGTACAGGATGTCA+AGG | + | chr2.1:2521880-2521899 | MS.gene36242:intron | 30.0% | |
| TAATGTTTGTAGAAAAGTGG+GGG | - | chr2.1:2522469-2522488 | None:intergenic | 30.0% | |
| TACGATAGCAAAACAATTTC+AGG | - | chr2.1:2520611-2520630 | None:intergenic | 30.0% | |
| TATACGAGAAACTATTAGGA+AGG | + | chr2.1:2522721-2522740 | MS.gene36242:intron | 30.0% | |
| TCAAATCAGTCAATTCAAAC+AGG | + | chr2.1:2521485-2521504 | MS.gene36242:intron | 30.0% | |
| TCCTGTTATGATTTACATGA+AGG | + | chr2.1:2521907-2521926 | MS.gene36242:CDS | 30.0% | |
| TCTACATGAGAATTCTATGA+TGG | + | chr2.1:2521819-2521838 | MS.gene36242:intron | 30.0% | |
| TGTGCTTATGTGATTTGAAA+AGG | + | chr2.1:2522108-2522127 | MS.gene36242:intron | 30.0% | |
| TGTGGAAATAAGCTGAAAAT+AGG | + | chr2.1:2521390-2521409 | MS.gene36242:intron | 30.0% | |
| TGTTAGAAGAGTAGATCAAA+TGG | - | chr2.1:2522367-2522386 | None:intergenic | 30.0% | |
| TTCAGAGGATATAATTTCTC+AGG | - | chr2.1:2522033-2522052 | None:intergenic | 30.0% | |
| TTCATATTCTACTAAGGCAA+TGG | + | chr2.1:2521216-2521235 | MS.gene36242:intron | 30.0% | |
| TTCATTAAGGGAGAGTTTAT+TGG | + | chr2.1:2524126-2524145 | MS.gene36242:CDS | 30.0% | |
| TTCCTATGTGTTTGATTATG+TGG | + | chr2.1:2520817-2520836 | MS.gene36242:intron | 30.0% | |
| TTGAAGAGGATGAAATCAAA+AGG | - | chr2.1:2522957-2522976 | None:intergenic | 30.0% | |
| TTGATCTACTCTTCTAACAA+CGG | + | chr2.1:2522368-2522387 | MS.gene36242:intron | 30.0% | |
| TTTGTCAAGTATTATTGAGC+AGG | + | chr2.1:2521774-2521793 | MS.gene36242:CDS | 30.0% | |
| ! | AAAAGCATGGAACTTTATGA+TGG | - | chr2.1:2520430-2520449 | None:intergenic | 30.0% |
| ! | AATGAGTTGGAGAAAAAACA+TGG | + | chr2.1:2522755-2522774 | MS.gene36242:intron | 30.0% |
| ! | ATTTGTTGAATGTAGCTGAT+GGG | + | chr2.1:2522498-2522517 | MS.gene36242:intron | 30.0% |
| ! | ATTTTCAAACATAGTAGCAC+CGG | + | chr2.1:2523968-2523987 | MS.gene36242:intron | 30.0% |
| ! | CTACCATCTTTTCTACTATA+GGG | - | chr2.1:2522583-2522602 | None:intergenic | 30.0% |
| ! | CTTTTTCCATTTTACGGTAT+TGG | + | chr2.1:2520445-2520464 | MS.gene36242:intron | 30.0% |
| ! | GTTTCTCGTATAGTTTTTCT+AGG | - | chr2.1:2522713-2522732 | None:intergenic | 30.0% |
| ! | TAATTTGCAGCTTATAGCAT+AGG | + | chr2.1:2521253-2521272 | MS.gene36242:intron | 30.0% |
| ! | TACCATCTTTTCTACTATAG+GGG | - | chr2.1:2522582-2522601 | None:intergenic | 30.0% |
| ! | TCTACCAACTTTTCTACTAT+AGG | + | chr2.1:2522438-2522457 | MS.gene36242:intron | 30.0% |
| ! | TCTACCATCTTTTCTACTAT+AGG | - | chr2.1:2522584-2522603 | None:intergenic | 30.0% |
| ! | TCTTTGCATTTAAAGTGGTA+TGG | + | chr2.1:2523917-2523936 | MS.gene36242:intron | 30.0% |
| ! | TGGTTTTTGATAGAACACTA+TGG | + | chr2.1:2522775-2522794 | MS.gene36242:intron | 30.0% |
| ! | TTTACAGCATTTTTCACTTC+AGG | - | chr2.1:2523296-2523315 | None:intergenic | 30.0% |
| ! | TTTGATTTCATCCTCTTCAA+CGG | + | chr2.1:2522957-2522976 | MS.gene36242:intron | 30.0% |
| !! | AATTTGTTGAATGTAGCTGA+TGG | + | chr2.1:2522497-2522516 | MS.gene36242:intron | 30.0% |
| !! | CCACTTTTCTACAAACATTA+TGG | + | chr2.1:2522469-2522488 | MS.gene36242:intron | 30.0% |
| !! | GTGACTTGTTAATAATGTAC+AGG | + | chr2.1:2521871-2521890 | MS.gene36242:intron | 30.0% |
| !! | TGAATATGACTTAGCTTTAC+TGG | + | chr2.1:2523180-2523199 | MS.gene36242:intron | 30.0% |
| !!! | TACACCTCTAGAATCAATTT+TGG | + | chr2.1:2521080-2521099 | MS.gene36242:intron | 30.0% |
| !!! | TCCATGCTTTTTCCATTTTA+CGG | + | chr2.1:2520439-2520458 | MS.gene36242:intron | 30.0% |
| !!! | TGATGGGTTTATTGTTTTGA+TGG | + | chr2.1:2521836-2521855 | MS.gene36242:intron | 30.0% |
| !!! | TGTTCAGTTTCATTTTTTGG+AGG | - | chr2.1:2521108-2521127 | None:intergenic | 30.0% |
| AAAATGCTGTAAAAGCCTAC+AGG | + | chr2.1:2523303-2523322 | MS.gene36242:CDS | 35.0% | |
| AAACTAGACATAGGTGGTTT+CGG | + | chr2.1:2522603-2522622 | MS.gene36242:intron | 35.0% | |
| AACCCCTATAGTAGAAAAGA+TGG | + | chr2.1:2522577-2522596 | MS.gene36242:intron | 35.0% | |
| ACCGTAAAATGGAAAAAGCA+TGG | - | chr2.1:2520443-2520462 | None:intergenic | 35.0% | |
| ACGACATTAGATAGAGAGTT+GGG | + | chr2.1:2522552-2522571 | MS.gene36242:intron | 35.0% | |
| AGAGGCAAAATCAATTATCC+TGG | + | chr2.1:2521028-2521047 | MS.gene36242:intron | 35.0% | |
| AGATGGTAGAAACTAGACAT+AGG | + | chr2.1:2522594-2522613 | MS.gene36242:intron | 35.0% | |
| AGCACCTATAGTAGAAAAGT+TGG | - | chr2.1:2522445-2522464 | None:intergenic | 35.0% | |
| AGGATGAAATCAAAAGGCAA+GGG | - | chr2.1:2522951-2522970 | None:intergenic | 35.0% | |
| ATTAAGGGAGAGTTTATTGG+TGG | + | chr2.1:2524129-2524148 | MS.gene36242:CDS | 35.0% | |
| ATTCTACTAAGGCAATGGTT+GGG | + | chr2.1:2521221-2521240 | MS.gene36242:intron | 35.0% | |
| CACCACATAATCAAACACAT+AGG | - | chr2.1:2520822-2520841 | None:intergenic | 35.0% | |
| CAGTAGAGAAACCATTAGAA+AGG | - | chr2.1:2522301-2522320 | None:intergenic | 35.0% | |
| CATCCTATATAAGTTTGTGC+AGG | - | chr2.1:2523062-2523081 | None:intergenic | 35.0% | |
| CCCTTCATGTAAATCATAAC+AGG | - | chr2.1:2521911-2521930 | None:intergenic | 35.0% | |
| CTTTCTAATGGTTTCTCTAC+TGG | + | chr2.1:2522299-2522318 | MS.gene36242:intron | 35.0% | |
| GAAAAAGGGCTAAAATTGAG+TGG | - | chr2.1:2521173-2521192 | None:intergenic | 35.0% | |
| GAAAATAGGCTTAGATGGTT+TGG | - | chr2.1:2522420-2522439 | None:intergenic | 35.0% | |
| GACCTCTAAATCCTTTCTAA+TGG | + | chr2.1:2522287-2522306 | MS.gene36242:intron | 35.0% | |
| GACTTGTGGATTCTGTAATA+AGG | + | chr2.1:2522639-2522658 | MS.gene36242:intron | 35.0% | |
| GCAAAATCAATTATCCTGGA+GGG | + | chr2.1:2521032-2521051 | MS.gene36242:intron | 35.0% | |
| GCAAGGTGAGAAATTATAAG+AGG | - | chr2.1:2520494-2520513 | None:intergenic | 35.0% | |
| GCACAAACTTATATAGGATG+CGG | + | chr2.1:2523062-2523081 | MS.gene36242:intron | 35.0% | |
| GGATCTAGAGATAAATGAGT+TGG | + | chr2.1:2522742-2522761 | MS.gene36242:intron | 35.0% | |
| GTAGAATATGAATGAGACAG+TGG | - | chr2.1:2521208-2521227 | None:intergenic | 35.0% | |
| TAATCACTTGAGATTGTCTG+CGG | - | chr2.1:2521450-2521469 | None:intergenic | 35.0% | |
| TATTCTACTAAGGCAATGGT+TGG | + | chr2.1:2521220-2521239 | MS.gene36242:intron | 35.0% | |
| TATTGTTCTTAGTATGCACC+AGG | + | chr2.1:2524158-2524177 | MS.gene36242:CDS | 35.0% | |
| TCTCCCTTAATGAAAACTTG+TGG | - | chr2.1:2524120-2524139 | None:intergenic | 35.0% | |
| TGGAATGAGATACACAACTA+AGG | + | chr2.1:2521684-2521703 | MS.gene36242:CDS | 35.0% | |
| TGGTAGAAAATAGGCTTAGA+TGG | - | chr2.1:2522425-2522444 | None:intergenic | 35.0% | |
| TTGATATATGTACATGCGTC+TGG | + | chr2.1:2523860-2523879 | MS.gene36242:intron | 35.0% | |
| ! | CAATGAGTTGGATCCAAATA+TGG | - | chr2.1:2522268-2522287 | None:intergenic | 35.0% |
| ! | TAGCTTTACTGGATGATGAA+TGG | + | chr2.1:2523191-2523210 | MS.gene36242:intron | 35.0% |
| ! | TGAGTGGCAATATTCACTTT+TGG | - | chr2.1:2521157-2521176 | None:intergenic | 35.0% |
| ! | TTTGAAGTCATCATGTGTGT+CGG | - | chr2.1:2521722-2521741 | None:intergenic | 35.0% |
| ! | TTTTCTGTATGTAACGGTGT+TGG | + | chr2.1:2521619-2521638 | MS.gene36242:intron | 35.0% |
| !! | TGGTTTTTGATAGAGCACTA+TGG | - | chr2.1:2522248-2522267 | None:intergenic | 35.0% |
| !!! | AAGCTTTTTTAGGCTCTGTT+TGG | + | chr2.1:2520674-2520693 | MS.gene36242:intron | 35.0% |
| !!! | AATCTGGACTAGTCTTTTCA+TGG | + | chr2.1:2522051-2522070 | MS.gene36242:intron | 35.0% |
| !!! | ATTAGGGTTTGTTTTAGGGT+TGG | - | chr2.1:2520382-2520401 | None:intergenic | 35.0% |
| !!! | GTTTCTCTACTGGTTTTCTT+AGG | + | chr2.1:2522309-2522328 | MS.gene36242:intron | 35.0% |
| AAGTTATCCTGGAGATCTTG+TGG | + | chr2.1:2521372-2521391 | MS.gene36242:intron | 40.0% | |
| AATCACTTGAGATTGTCTGC+GGG | - | chr2.1:2521449-2521468 | None:intergenic | 40.0% | |
| AGAGAACTAAATCCACACTG+TGG | - | chr2.1:2521947-2521966 | None:intergenic | 40.0% | |
| AGATCAAATGGAGAAGAGTC+AGG | - | chr2.1:2522355-2522374 | None:intergenic | 40.0% | |
| AGCGATTCCCTTGAAAAGAA+TGG | - | chr2.1:2520329-2520348 | None:intergenic | 40.0% | |
| AGTCAGGTTAAAAGAGGTAG+AGG | - | chr2.1:2522339-2522358 | None:intergenic | 40.0% | |
| CAGATGTTCCTTTAAGTGCT+AGG | + | chr2.1:2523255-2523274 | MS.gene36242:intron | 40.0% | |
| CATACATTGCCACTCAAGTT+TGG | + | chr2.1:2521126-2521145 | MS.gene36242:intron | 40.0% | |
| CGACATTAGATAGAGAGTTG+GGG | + | chr2.1:2522553-2522572 | MS.gene36242:intron | 40.0% | |
| CTTATTTCCACAAGATCTCC+AGG | - | chr2.1:2521382-2521401 | None:intergenic | 40.0% | |
| CTTCTAACAACGGCATCTAT+GGG | + | chr2.1:2522378-2522397 | MS.gene36242:intron | 40.0% | |
| GACGACATTAGATAGAGAGT+TGG | + | chr2.1:2522551-2522570 | MS.gene36242:intron | 40.0% | |
| GAGAACTAAATCCACACTGT+GGG | - | chr2.1:2521946-2521965 | None:intergenic | 40.0% | |
| GAGAAGAGTCAGGTTAAAAG+AGG | - | chr2.1:2522345-2522364 | None:intergenic | 40.0% | |
| GAGGATGAAATCAAAAGGCA+AGG | - | chr2.1:2522952-2522971 | None:intergenic | 40.0% | |
| GCATGAACAAACTTACCTGT+AGG | - | chr2.1:2523321-2523340 | None:intergenic | 40.0% | |
| GCTGTCTTCATAAGTTATCC+TGG | + | chr2.1:2521361-2521380 | MS.gene36242:intron | 40.0% | |
| GGATACCCAATACCGTAAAA+TGG | - | chr2.1:2520454-2520473 | None:intergenic | 40.0% | |
| GGATTTAGAGGTCAATGAGT+TGG | - | chr2.1:2522280-2522299 | None:intergenic | 40.0% | |
| GGCAAAATCAATTATCCTGG+AGG | + | chr2.1:2521031-2521050 | MS.gene36242:intron | 40.0% | |
| TATTTCACACCCTTGTAGAG+TGG | + | chr2.1:2524242-2524261 | MS.gene36242:intron | 40.0% | |
| TCTTCTAACAACGGCATCTA+TGG | + | chr2.1:2522377-2522396 | MS.gene36242:intron | 40.0% | |
| TGACTGCAGAGAAAGAACAT+GGG | - | chr2.1:2524084-2524103 | None:intergenic | 40.0% | |
| TGGTAGAAACTAGACATAGG+TGG | + | chr2.1:2522597-2522616 | MS.gene36242:intron | 40.0% | |
| TGTTGTTGTAGCTGATGTCA+TGG | + | chr2.1:2522862-2522881 | MS.gene36242:intron | 40.0% | |
| TTAGGCTCTGTTTGGATGAA+CGG | + | chr2.1:2520682-2520701 | MS.gene36242:intron | 40.0% | |
| TTCAACTCACCACTCTACAA+GGG | - | chr2.1:2524254-2524273 | None:intergenic | 40.0% | |
| TTCATCCTCTTCAACGGAAA+AGG | + | chr2.1:2522963-2522982 | MS.gene36242:intron | 40.0% | |
| TTGAAAAGGTAGACTCAGAG+TGG | + | chr2.1:2522122-2522141 | MS.gene36242:intron | 40.0% | |
| ! | AAAGACTAGTCCAGATTCAG+AGG | - | chr2.1:2522048-2522067 | None:intergenic | 40.0% |
| ! | AAGTGCTAGGAACATTTTGC+AGG | + | chr2.1:2523268-2523287 | MS.gene36242:CDS | 40.0% |
| ! | ACAGGTAAGTTTGTTCATGC+TGG | + | chr2.1:2523321-2523340 | MS.gene36242:intron | 40.0% |
| ! | AGTTTCCTTTTCCGTTGAAG+AGG | - | chr2.1:2522971-2522990 | None:intergenic | 40.0% |
| ! | ATGGCGACCATTCTTTTCAA+GGG | + | chr2.1:2520319-2520338 | MS.gene36242:CDS | 40.0% |
| ! | GGAGCCAAAATTGATTCTAG+AGG | - | chr2.1:2521087-2521106 | None:intergenic | 40.0% |
| ! | TAAGCCTTATCCCACTAAGT+GGG | - | chr2.1:2522825-2522844 | None:intergenic | 40.0% |
| !! | CAGGCACTAAGATTGACTTT+TGG | + | chr2.1:2521504-2521523 | MS.gene36242:intron | 40.0% |
| !! | CTGATGGGTTATTGACTAGA+CGG | + | chr2.1:2522513-2522532 | MS.gene36242:intron | 40.0% |
| !! | GTGGCAATATTCACTTTTGG+AGG | - | chr2.1:2521154-2521173 | None:intergenic | 40.0% |
| !! | TGATGGGTTATTGACTAGAC+GGG | + | chr2.1:2522514-2522533 | MS.gene36242:intron | 40.0% |
| AAAAGGTAGACTCAGAGTGG+AGG | + | chr2.1:2522125-2522144 | MS.gene36242:intron | 45.0% | |
| AATCCACACTGTGGGAAATC+AGG | - | chr2.1:2521938-2521957 | None:intergenic | 45.0% | |
| AGTCAGATCACTAGAGGTAG+GGG | + | chr2.1:2522683-2522702 | MS.gene36242:intron | 45.0% | |
| CTTCAACTCACCACTCTACA+AGG | - | chr2.1:2524255-2524274 | None:intergenic | 45.0% | |
| GAGTCAGATCACTAGAGGTA+GGG | + | chr2.1:2522682-2522701 | MS.gene36242:intron | 45.0% | |
| GGAGAATAGATCAGATGGAG+AGG | + | chr2.1:2522660-2522679 | MS.gene36242:intron | 45.0% | |
| GTGACTGCAGAGAAAGAACA+TGG | - | chr2.1:2524085-2524104 | None:intergenic | 45.0% | |
| TCTTGCAATGGGAACTAACC+TGG | - | chr2.1:2524179-2524198 | None:intergenic | 45.0% | |
| TGTTCTTTCTCTGCAGTCAC+TGG | + | chr2.1:2524085-2524104 | MS.gene36242:intron | 45.0% | |
| TTGGAGGAACCAAACTTGAG+TGG | - | chr2.1:2521138-2521157 | None:intergenic | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr2.1:2522199-2522218 | MS.gene36242:intron | 45.0% |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr2.1:2522218-2522199 | None:intergenic | 45.0% |
| ! | AAGGGTTAGTACATAGGTGC+TGG | + | chr2.1:2523003-2523022 | MS.gene36242:intron | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr2.1:2522198-2522217 | MS.gene36242:intron | 45.0% |
| ! | CTAAGCCTTATCCCACTAAG+TGG | - | chr2.1:2522826-2522845 | None:intergenic | 45.0% |
| ! | CTTGTAGAGTGGTGAGTTGA+AGG | + | chr2.1:2524253-2524272 | MS.gene36242:intron | 45.0% |
| !! | GATGGGTTATTGACTAGACG+GGG | + | chr2.1:2522515-2522534 | MS.gene36242:intron | 45.0% |
| ATTGGCAGCACCAGCATTTC+CGG | - | chr2.1:2523990-2524009 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr2.1:2522842-2522823 | None:intergenic | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr2.1:2522203-2522222 | MS.gene36242:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr2.1:2522222-2522203 | None:intergenic | 50.0% | |
| GAGAGGAGTCAGATCACTAG+AGG | + | chr2.1:2522677-2522696 | MS.gene36242:intron | 50.0% | |
| GCACGTAGAGAGAAGACTTG+TGG | + | chr2.1:2522625-2522644 | MS.gene36242:intron | 50.0% | |
| GGAGTCAGATCACTAGAGGT+AGG | + | chr2.1:2522681-2522700 | MS.gene36242:intron | 50.0% | |
| GGTTGGAAAGCTTACACGTG+TGG | - | chr2.1:2520365-2520384 | None:intergenic | 50.0% | |
| GTACCTGATTTCCCACAGTG+TGG | + | chr2.1:2521932-2521951 | MS.gene36242:CDS | 50.0% | |
| ! | CATAGTAGCACCGGAAATGC+TGG | + | chr2.1:2523977-2523996 | MS.gene36242:intron | 50.0% |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr2.1:2522197-2522216 | MS.gene36242:intron | 50.0% |
| ! | GACATGTTTGGTTTCCCTCC+AGG | - | chr2.1:2521049-2521068 | None:intergenic | 50.0% |
| ! | GGTATGGTTGTGTCACTGTC+TGG | + | chr2.1:2523933-2523952 | MS.gene36242:intron | 50.0% |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr2.1:2522211-2522230 | MS.gene36242:intron | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr2.1:2522811-2522830 | MS.gene36242:intron | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr2.1:2522830-2522811 | None:intergenic | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr2.1:2522818-2522837 | MS.gene36242:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr2.1:2522837-2522818 | None:intergenic | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | chr2.1:2522812-2522831 | MS.gene36242:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr2.1:2522831-2522812 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 2520319 | 2524307 | 2520319 | ID=MS.gene36242 |
| chr2.1 | mRNA | 2520319 | 2524307 | 2520319 | ID=MS.gene36242.t1;Parent=MS.gene36242 |
| chr2.1 | exon | 2520319 | 2520369 | 2520319 | ID=MS.gene36242.t1.exon1;Parent=MS.gene36242.t1 |
| chr2.1 | CDS | 2520319 | 2520369 | 2520319 | ID=cds.MS.gene36242.t1;Parent=MS.gene36242.t1 |
| chr2.1 | exon | 2521664 | 2521795 | 2521664 | ID=MS.gene36242.t1.exon2;Parent=MS.gene36242.t1 |
| chr2.1 | CDS | 2521664 | 2521795 | 2521664 | ID=cds.MS.gene36242.t1;Parent=MS.gene36242.t1 |
| chr2.1 | exon | 2521893 | 2521992 | 2521893 | ID=MS.gene36242.t1.exon3;Parent=MS.gene36242.t1 |
| chr2.1 | CDS | 2521893 | 2521992 | 2521893 | ID=cds.MS.gene36242.t1;Parent=MS.gene36242.t1 |
| chr2.1 | exon | 2523258 | 2523324 | 2523258 | ID=MS.gene36242.t1.exon4;Parent=MS.gene36242.t1 |
| chr2.1 | CDS | 2523258 | 2523324 | 2523258 | ID=cds.MS.gene36242.t1;Parent=MS.gene36242.t1 |
| chr2.1 | exon | 2524101 | 2524179 | 2524101 | ID=MS.gene36242.t1.exon5;Parent=MS.gene36242.t1 |
| chr2.1 | CDS | 2524101 | 2524179 | 2524101 | ID=cds.MS.gene36242.t1;Parent=MS.gene36242.t1 |
| chr2.1 | exon | 2524260 | 2524307 | 2524260 | ID=MS.gene36242.t1.exon6;Parent=MS.gene36242.t1 |
| chr2.1 | CDS | 2524260 | 2524307 | 2524260 | ID=cds.MS.gene36242.t1;Parent=MS.gene36242.t1 |
| Gene Sequence |
| Protein sequence |
