Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42649.t1 | XP_003603240.2 | 99.2 | 717 | 5 | 1 | 1 | 717 | 1 | 716 | 0.00E+00 | 1439.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42649.t1 | P56821 | 78.1 | 718 | 153 | 3 | 1 | 716 | 1 | 716 | 0.0e+00 | 1147.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42649.t1 | G7J950 | 99.2 | 717 | 5 | 1 | 1 | 717 | 1 | 716 | 0.0e+00 | 1439.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene42649 | 0.818019 | 2.44E-52 | -1.69E-46 |
| MS.gene049350 | MS.gene42649 | 0.812165 | 4.86E-51 | -1.69E-46 |
| MS.gene049441 | MS.gene42649 | 0.803882 | 2.82E-49 | -1.69E-46 |
| MS.gene049887 | MS.gene42649 | 0.839094 | 1.95E-57 | -1.69E-46 |
| MS.gene050439 | MS.gene42649 | 0.818435 | 1.96E-52 | -1.69E-46 |
| MS.gene050551 | MS.gene42649 | 0.822579 | 2.20E-53 | -1.69E-46 |
| MS.gene050838 | MS.gene42649 | 0.875835 | 2.25E-68 | -1.69E-46 |
| MS.gene051003 | MS.gene42649 | 0.806131 | 9.55E-50 | -1.69E-46 |
| MS.gene051234 | MS.gene42649 | 0.835219 | 1.91E-56 | -1.69E-46 |
| MS.gene051343 | MS.gene42649 | 0.81998 | 8.74E-53 | -1.69E-46 |
| MS.gene051700 | MS.gene42649 | 0.828671 | 7.90E-55 | -1.69E-46 |
| MS.gene051850 | MS.gene42649 | 0.825226 | 5.26E-54 | -1.69E-46 |
| MS.gene051885 | MS.gene42649 | 0.858322 | 8.92E-63 | -1.69E-46 |
| MS.gene05188 | MS.gene42649 | 0.8269 | 2.10E-54 | -1.69E-46 |
| MS.gene051975 | MS.gene42649 | 0.812333 | 4.47E-51 | -1.69E-46 |
| MS.gene052307 | MS.gene42649 | 0.808438 | 3.10E-50 | -1.69E-46 |
| MS.gene052609 | MS.gene42649 | 0.825948 | 3.55E-54 | -1.69E-46 |
| MS.gene052947 | MS.gene42649 | 0.818015 | 2.44E-52 | -1.69E-46 |
| MS.gene053122 | MS.gene42649 | 0.838661 | 2.52E-57 | -1.69E-46 |
| MS.gene053143 | MS.gene42649 | 0.832826 | 7.57E-56 | -1.69E-46 |
| MS.gene053144 | MS.gene42649 | 0.809107 | 2.23E-50 | -1.69E-46 |
| MS.gene053581 | MS.gene42649 | 0.817445 | 3.29E-52 | -1.69E-46 |
| MS.gene054584 | MS.gene42649 | 0.806453 | 8.17E-50 | -1.69E-46 |
| MS.gene054824 | MS.gene42649 | 0.800821 | 1.20E-48 | -1.69E-46 |
| MS.gene055465 | MS.gene42649 | 0.817434 | 3.30E-52 | -1.69E-46 |
| MS.gene055468 | MS.gene42649 | 0.820415 | 6.94E-53 | -1.69E-46 |
| MS.gene055469 | MS.gene42649 | 0.843388 | 1.45E-58 | -1.69E-46 |
| MS.gene055513 | MS.gene42649 | 0.840578 | 7.99E-58 | -1.69E-46 |
| MS.gene055537 | MS.gene42649 | 0.808978 | 2.37E-50 | -1.69E-46 |
| MS.gene055580 | MS.gene42649 | -0.827128 | 1.86E-54 | -1.69E-46 |
| MS.gene055764 | MS.gene42649 | 0.80584 | 1.10E-49 | -1.69E-46 |
| MS.gene055975 | MS.gene42649 | 0.800154 | 1.65E-48 | -1.69E-46 |
| MS.gene056043 | MS.gene42649 | -0.836389 | 9.63E-57 | -1.69E-46 |
| MS.gene056075 | MS.gene42649 | 0.824869 | 6.39E-54 | -1.69E-46 |
| MS.gene056308 | MS.gene42649 | 0.820968 | 5.18E-53 | -1.69E-46 |
| MS.gene056432 | MS.gene42649 | 0.803649 | 3.15E-49 | -1.69E-46 |
| MS.gene057094 | MS.gene42649 | 0.837847 | 4.08E-57 | -1.69E-46 |
| MS.gene057102 | MS.gene42649 | 0.805094 | 1.58E-49 | -1.69E-46 |
| MS.gene058638 | MS.gene42649 | 0.813671 | 2.27E-51 | -1.69E-46 |
| MS.gene058639 | MS.gene42649 | 0.825011 | 5.91E-54 | -1.69E-46 |
| MS.gene058668 | MS.gene42649 | 0.844975 | 5.42E-59 | -1.69E-46 |
| MS.gene058720 | MS.gene42649 | 0.804981 | 1.66E-49 | -1.69E-46 |
| MS.gene05880 | MS.gene42649 | 0.826072 | 3.32E-54 | -1.69E-46 |
| MS.gene058852 | MS.gene42649 | 0.833714 | 4.55E-56 | -1.69E-46 |
| MS.gene059146 | MS.gene42649 | 0.803526 | 3.34E-49 | -1.69E-46 |
| MS.gene059171 | MS.gene42649 | 0.841308 | 5.14E-58 | -1.69E-46 |
| MS.gene059227 | MS.gene42649 | 0.828716 | 7.70E-55 | -1.69E-46 |
| MS.gene06001 | MS.gene42649 | 0.829087 | 6.26E-55 | -1.69E-46 |
| MS.gene06011 | MS.gene42649 | 0.801061 | 1.08E-48 | -1.69E-46 |
| MS.gene060763 | MS.gene42649 | 0.813958 | 1.97E-51 | -1.69E-46 |
| MS.gene061006 | MS.gene42649 | 0.844609 | 6.80E-59 | -1.69E-46 |
| MS.gene061007 | MS.gene42649 | 0.817597 | 3.04E-52 | -1.69E-46 |
| MS.gene061100 | MS.gene42649 | 0.826432 | 2.72E-54 | -1.69E-46 |
| MS.gene06117 | MS.gene42649 | 0.805278 | 1.44E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene42649 | MS.gene32742 | PPI |
| MS.gene42649 | MS.gene014948 | PPI |
| MS.gene42649 | MS.gene02692 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42649.t1 | MTR_3g105430 | 99.163 | 717 | 5 | 1 | 1 | 717 | 1 | 716 | 0.0 | 1461 |
| MS.gene42649.t1 | MTR_7g056267 | 83.505 | 97 | 16 | 0 | 603 | 699 | 10 | 106 | 8.65e-46 | 160 |
| MS.gene42649.t1 | MTR_4g087280 | 24.000 | 400 | 265 | 14 | 225 | 615 | 51 | 420 | 3.30e-22 | 101 |
| MS.gene42649.t1 | MTR_4g087280 | 24.000 | 400 | 265 | 14 | 225 | 615 | 51 | 420 | 3.90e-22 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42649.t1 | AT5G27640 | 76.197 | 710 | 168 | 1 | 5 | 713 | 1 | 710 | 0.0 | 1157 |
| MS.gene42649.t1 | AT5G27640 | 76.197 | 710 | 168 | 1 | 5 | 713 | 1 | 710 | 0.0 | 1157 |
| MS.gene42649.t1 | AT5G25780 | 76.504 | 698 | 163 | 1 | 17 | 713 | 14 | 711 | 0.0 | 1149 |
| MS.gene42649.t1 | AT5G27640 | 73.505 | 736 | 168 | 2 | 5 | 713 | 1 | 736 | 0.0 | 1144 |
| MS.gene42649.t1 | AT1G49015 | 50.885 | 226 | 91 | 5 | 311 | 535 | 3 | 209 | 7.46e-66 | 217 |
| MS.gene42649.t1 | AT1G73180 | 22.931 | 423 | 290 | 11 | 195 | 610 | 18 | 411 | 2.41e-24 | 107 |
| MS.gene42649.t1 | AT1G73180 | 22.931 | 423 | 290 | 11 | 195 | 610 | 18 | 411 | 2.59e-24 | 107 |
Find 162 sgRNAs with CRISPR-Local
Find 269 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAAGGATCACTTCTTTC+AGG | 0.197022 | 3.4:-92191088 | MS.gene42649:intron |
| TCAGTTCATGAAATGGAAAA+TGG | 0.213561 | 3.4:-92191153 | MS.gene42649:CDS |
| TTGCCTGAGTTCTTCTTTGC+TGG | 0.214747 | 3.4:+92191856 | None:intergenic |
| TTCAATATATATAGTTCTTA+TGG | 0.217744 | 3.4:-92190779 | MS.gene42649:intron |
| CTGGAGTTTGATTCTGGATT+TGG | 0.226852 | 3.4:-92193847 | MS.gene42649:CDS |
| ACATACTCACAGAAAATATA+TGG | 0.231895 | 3.4:+92193505 | None:intergenic |
| GAGAATCTGGAGTTTGATTC+TGG | 0.241775 | 3.4:-92193853 | MS.gene42649:CDS |
| TTCACCTGGTGAGAAGTATT+TGG | 0.260721 | 3.4:-92192561 | MS.gene42649:CDS |
| TTTGAAGGTTGAAAATATAA+TGG | 0.262529 | 3.4:-92192106 | MS.gene42649:CDS |
| GAAGACAAAGCTTTGCTTCT+CGG | 0.279856 | 3.4:-92194056 | MS.gene42649:CDS |
| CTCGAGGATTGCTTGGTTCA+TGG | 0.280093 | 3.4:+92192525 | None:intergenic |
| CCTGGAGCATATTCCTTGTT+TGG | 0.282373 | 3.4:+92193432 | None:intergenic |
| TGGAAAATGGATTCAATATA+TGG | 0.298256 | 3.4:-92191140 | MS.gene42649:CDS |
| CTTACAGCACGTTTATAAAC+AGG | 0.307612 | 3.4:+92192950 | None:intergenic |
| GTATGTCACGTTCCTTTATA+CGG | 0.318455 | 3.4:+92191711 | None:intergenic |
| TGCCTGAGTTCTTCTTTGCT+GGG | 0.335374 | 3.4:+92191857 | None:intergenic |
| CATAGATTTGCTGTTATTCA+TGG | 0.340404 | 3.4:-92191620 | MS.gene42649:CDS |
| GTCACCTTTGGGTACTTACT+TGG | 0.345166 | 3.4:-92192798 | MS.gene42649:CDS |
| TCAATGGCAAACATCTTTAT+CGG | 0.350253 | 3.4:-92191113 | MS.gene42649:CDS |
| ATGCAACAGCTTCCATTCAT+TGG | 0.362435 | 3.4:+92190587 | None:intergenic |
| TTCCTCAACTTCAATGTCCT+TGG | 0.368351 | 3.4:+92190494 | None:intergenic |
| TGACATACCTATTGAAGTTC+TGG | 0.372905 | 3.4:-92191696 | MS.gene42649:CDS |
| AGTCAAGAAAGAGGCTGGTC+TGG | 0.374540 | 3.4:+92190752 | None:intergenic |
| AGCAGGCAAATGCTTTGTTT+TGG | 0.385029 | 3.4:-92191508 | MS.gene42649:CDS |
| TAGATACTAATATCAGGCTT+AGG | 0.385115 | 3.4:+92191590 | None:intergenic |
| CTCAACTTGAAGGATCTCTT+TGG | 0.396493 | 3.4:+92190458 | None:intergenic |
| TCCTTCTACTGAAAAGTCCT+TGG | 0.402875 | 3.4:-92193695 | MS.gene42649:CDS |
| AGGAACAAACAATGAAATGA+TGG | 0.426468 | 3.4:+92192059 | None:intergenic |
| ATAGAGTAGATACTAATATC+AGG | 0.429014 | 3.4:+92191584 | None:intergenic |
| TGTTATTCAAGAGGAGAATC+TGG | 0.430382 | 3.4:-92193866 | MS.gene42649:CDS |
| TCGAGCTCCAGAACTTCAAT+AGG | 0.431350 | 3.4:+92191689 | None:intergenic |
| TCATTGTTTGTTCCTGAGAC+AGG | 0.434027 | 3.4:-92192051 | MS.gene42649:CDS |
| ATAAGATCATTGCATTTGCT+TGG | 0.434886 | 3.4:-92191655 | MS.gene42649:CDS |
| CTCTTTCTTGACTGCTGAGA+AGG | 0.436026 | 3.4:-92190742 | MS.gene42649:CDS |
| GAAAGGTTTCAATGGACTGT+TGG | 0.438764 | 3.4:-92191450 | MS.gene42649:CDS |
| GGAGGAGGAGCCCACTCGTC+TGG | 0.438943 | 3.4:+92193453 | None:intergenic |
| AATTTCTCCTTGGGAACAAC+AGG | 0.441899 | 3.4:+92193799 | None:intergenic |
| AAGCTTCTCGAATTTCTCCT+TGG | 0.445814 | 3.4:+92193789 | None:intergenic |
| TAAGATCATTGCATTTGCTT+GGG | 0.448404 | 3.4:-92191654 | MS.gene42649:CDS |
| CTTGGCAACAGTTCACCGTC+AGG | 0.449567 | 3.4:-92192780 | MS.gene42649:CDS |
| CTATTAAAGAGGATGGTCTC+TGG | 0.450216 | 3.4:-92193729 | MS.gene42649:CDS |
| AGAGAGATGTACTTGAAAAC+AGG | 0.450761 | 3.4:+92192304 | None:intergenic |
| GGAGCATATTCCTTGTTTGG+AGG | 0.451980 | 3.4:+92193435 | None:intergenic |
| ACAGCAAATCTATGTCCCTT+TGG | 0.453395 | 3.4:+92191629 | None:intergenic |
| AGCTTCTCGAATTTCTCCTT+GGG | 0.454211 | 3.4:+92193790 | None:intergenic |
| TTCAATATATGGTCTTTCAA+TGG | 0.455846 | 3.4:-92191129 | MS.gene42649:CDS |
| AACCAGCACGAATCACAAAC+TGG | 0.455853 | 3.4:+92193020 | None:intergenic |
| GAAGACTCAAGGATACAAAC+TGG | 0.456776 | 3.4:-92193535 | MS.gene42649:CDS |
| TTTATGCAACTGATGTTGAA+TGG | 0.458529 | 3.4:-92191379 | MS.gene42649:CDS |
| TGTAACTTCAGTTCATGAAA+TGG | 0.459413 | 3.4:-92191160 | MS.gene42649:CDS |
| TGATAAGTACTTTGCAAGGA+TGG | 0.459925 | 3.4:-92192187 | MS.gene42649:CDS |
| CCTTCTACTGAAAAGTCCTT+GGG | 0.460856 | 3.4:-92193694 | MS.gene42649:CDS |
| CCAAACAAGGAATATGCTCC+AGG | 0.464666 | 3.4:-92193432 | MS.gene42649:CDS |
| GTCAAGAAAGAGGCTGGTCT+GGG | 0.472650 | 3.4:+92190753 | None:intergenic |
| TTTGTACAATGGTCACCTTT+GGG | 0.473131 | 3.4:-92192809 | MS.gene42649:CDS |
| CATGCGTTACGCACATCCTC+AGG | 0.475971 | 3.4:-92192717 | MS.gene42649:intron |
| GGAGGTACTGGAGGTGTCAC+TGG | 0.476252 | 3.4:-92192337 | MS.gene42649:CDS |
| TGAAAGAAGATTGGGACAAG+TGG | 0.476327 | 3.4:-92190611 | MS.gene42649:CDS |
| CATTGAAGTTGAGGAAATAG+TGG | 0.477980 | 3.4:-92190487 | MS.gene42649:CDS |
| TGCATTTGCTTGGGAGCCAA+AGG | 0.480773 | 3.4:-92191645 | MS.gene42649:CDS |
| AAAATATAATGGATTTCAGC+TGG | 0.484915 | 3.4:-92192095 | MS.gene42649:CDS |
| GAGTAGTGAGCTTTGAAACT+CGG | 0.485051 | 3.4:+92191540 | None:intergenic |
| GCTAATACTCCTCAACTTGA+AGG | 0.487202 | 3.4:+92190448 | None:intergenic |
| CAAAGGAAAATCTGCAACAA+TGG | 0.488176 | 3.4:-92193066 | MS.gene42649:intron |
| AAACAGAAATTTACCCTAGC+AGG | 0.488817 | 3.4:+92192015 | None:intergenic |
| GGGACAAGTGGGCCAATGAA+TGG | 0.489541 | 3.4:-92190599 | MS.gene42649:CDS |
| AGAAGCTAGTGATGAGGAAG+AGG | 0.489836 | 3.4:-92190526 | MS.gene42649:CDS |
| TTATGCAACTGATGTTGAAT+GGG | 0.491113 | 3.4:-92191378 | MS.gene42649:CDS |
| TGGTTACCACCTCCTGTCTC+AGG | 0.491207 | 3.4:+92192039 | None:intergenic |
| GTAGGGTCTTGAAAGAAGAT+TGG | 0.493073 | 3.4:-92190620 | MS.gene42649:CDS |
| GCATATTCCTTGTTTGGAGG+AGG | 0.495988 | 3.4:+92193438 | None:intergenic |
| ATGAAGAAGAGAAGCTAGAG+AGG | 0.497330 | 3.4:-92190566 | MS.gene42649:CDS |
| AGATACTAATATCAGGCTTA+GGG | 0.497798 | 3.4:+92191591 | None:intergenic |
| GACCAGTTTGTGATTCGTGC+TGG | 0.499072 | 3.4:-92193022 | MS.gene42649:CDS |
| GCAGGATTGAAAGGTTTCAA+TGG | 0.500217 | 3.4:-92191458 | MS.gene42649:CDS |
| AGGATTCCGCAGTTGTCACC+TGG | 0.502357 | 3.4:+92193990 | None:intergenic |
| GCACGTTTATAAACAGGGTC+GGG | 0.503903 | 3.4:+92192956 | None:intergenic |
| GAGGTGGTAACCAGCCTGCT+AGG | 0.506612 | 3.4:-92192029 | MS.gene42649:CDS |
| TTAGCATCTCGAGGATTGCT+TGG | 0.508363 | 3.4:+92192518 | None:intergenic |
| TAGGGTCTTGAAAGAAGATT+GGG | 0.508845 | 3.4:-92190619 | MS.gene42649:CDS |
| AACAAGAGCGTGAGAAGCGT+AGG | 0.510887 | 3.4:-92190638 | MS.gene42649:CDS |
| GGAACAAACAATGAAATGAT+GGG | 0.513266 | 3.4:+92192060 | None:intergenic |
| GATTCCATTCACCTTCCTCC+AGG | 0.514429 | 3.4:-92194008 | MS.gene42649:CDS |
| GGTCGCTTCATTGTACTAGC+AGG | 0.518685 | 3.4:-92191476 | MS.gene42649:CDS |
| GATGTTGAATGGGATCCAAC+TGG | 0.519724 | 3.4:-92191368 | MS.gene42649:CDS |
| CACTACTCTGAAAGGCAAGC+AGG | 0.520325 | 3.4:-92191525 | MS.gene42649:CDS |
| GCCTGAGTTCTTCTTTGCTG+GGG | 0.521347 | 3.4:+92191858 | None:intergenic |
| CATACTCACAGAAAATATAT+GGG | 0.522843 | 3.4:+92193506 | None:intergenic |
| TCAGCAGCAATGAAACATCT+TGG | 0.522882 | 3.4:+92190664 | None:intergenic |
| GTCACCTGGAGGAAGGTGAA+TGG | 0.523301 | 3.4:+92194004 | None:intergenic |
| TTTGTTCCTGAGACAGGAGG+TGG | 0.523334 | 3.4:-92192045 | MS.gene42649:CDS |
| GTGACAACTGCGGAATCCTC+AGG | 0.526265 | 3.4:-92193986 | MS.gene42649:intron |
| ATGCGGACGGCTCAGAACAC+TGG | 0.531191 | 3.4:-92191563 | MS.gene42649:CDS |
| CTTCTCAGCAGTCAAGAAAG+AGG | 0.535616 | 3.4:+92190743 | None:intergenic |
| CAAAGAGATCCTTCAAGTTG+AGG | 0.540194 | 3.4:-92190457 | MS.gene42649:CDS |
| CGCAGTTGTCACCTGGAGGA+AGG | 0.540787 | 3.4:+92193997 | None:intergenic |
| AATGGAATCGAGATCGATAG+AGG | 0.542175 | 3.4:+92194022 | None:intergenic |
| ATTGTACTAGCAGGATTGAA+AGG | 0.547734 | 3.4:-92191467 | MS.gene42649:CDS |
| TAGATAATATACCTTCCAGT+TGG | 0.547750 | 3.4:+92191353 | None:intergenic |
| TCAGCAGTCAAGAAAGAGGC+TGG | 0.549593 | 3.4:+92190747 | None:intergenic |
| AGCACGTTTATAAACAGGGT+CGG | 0.550976 | 3.4:+92192955 | None:intergenic |
| ACAAAGAAAAGCACATTCAC+AGG | 0.551860 | 3.4:-92191746 | MS.gene42649:CDS |
| CATTGAGTACAATACTCCTC+AGG | 0.551994 | 3.4:-92193662 | MS.gene42649:intron |
| GCATTTGCTTGGGAGCCAAA+GGG | 0.553319 | 3.4:-92191644 | MS.gene42649:CDS |
| ATTTGGCAATATTATTGTCG+TGG | 0.553330 | 3.4:-92193830 | MS.gene42649:CDS |
| AGCCAAGGACATTGAAGTTG+AGG | 0.555326 | 3.4:-92190496 | MS.gene42649:CDS |
| TAATCTACCTGTTGTTCCCA+AGG | 0.563226 | 3.4:-92193806 | MS.gene42649:CDS |
| AACATATTTGATGTGAGGAC+TGG | 0.564013 | 3.4:-92192406 | MS.gene42649:CDS |
| ACATCTTTATCGGATATTGA+AGG | 0.564648 | 3.4:-92191103 | MS.gene42649:CDS |
| TTTCTTGACTGCTGAGAAGG+AGG | 0.564955 | 3.4:-92190739 | MS.gene42649:CDS |
| TCAGTGACTGCAAGATGTAC+TGG | 0.566940 | 3.4:-92191817 | MS.gene42649:CDS |
| AGCTAGAGAGGGAAAATCTG+AGG | 0.568066 | 3.4:-92190554 | MS.gene42649:CDS |
| AGTACAATGAAGCGACCTGC+TGG | 0.569021 | 3.4:+92191482 | None:intergenic |
| AAAATGTTCAGTATTAGCCA+TGG | 0.570734 | 3.4:+92191400 | None:intergenic |
| TCAGATTGGTGCTATTAAAG+AGG | 0.572204 | 3.4:-92193740 | MS.gene42649:CDS |
| ACAATGGCTTACTGATGCTA+AGG | 0.574787 | 3.4:-92193050 | MS.gene42649:CDS |
| TTGTTTGTTCCTGAGACAGG+AGG | 0.576213 | 3.4:-92192048 | MS.gene42649:CDS |
| GATAAGTACTTTGCAAGGAT+GGG | 0.579491 | 3.4:-92192186 | MS.gene42649:CDS |
| TCAAAGCTCACTACTCTGAA+AGG | 0.580014 | 3.4:-92191533 | MS.gene42649:CDS |
| ATTGGTGCTATTAAAGAGGA+TGG | 0.581702 | 3.4:-92193736 | MS.gene42649:CDS |
| TTGGCAACAGTTCACCGTCA+GGG | 0.582074 | 3.4:-92192779 | MS.gene42649:CDS |
| GTAACGCATGAGACGATTGA+AGG | 0.583285 | 3.4:+92192730 | None:intergenic |
| AGAAATTTACCCTAGCAGGC+TGG | 0.583948 | 3.4:+92192019 | None:intergenic |
| CATGAAAGTGCCAGACGAGT+GGG | 0.584342 | 3.4:-92193463 | MS.gene42649:CDS |
| GTGGGCTCCTCCTCCAAACA+AGG | 0.584356 | 3.4:-92193445 | MS.gene42649:CDS |
| AATGAAATGATGGGATCAGT+TGG | 0.584945 | 3.4:+92192069 | None:intergenic |
| TCCCCAGCAAAGAAGAACTC+AGG | 0.587881 | 3.4:-92191859 | MS.gene42649:CDS |
| TGACGATGATGTTATTCAAG+AGG | 0.592706 | 3.4:-92193875 | MS.gene42649:CDS |
| GAGGTGTCACTGGAGTGTCA+TGG | 0.597067 | 3.4:-92192327 | MS.gene42649:CDS |
| TCATGAAAGTGCCAGACGAG+TGG | 0.602382 | 3.4:-92193464 | MS.gene42649:CDS |
| AGGTGGTAACCAGCCTGCTA+GGG | 0.602403 | 3.4:-92192028 | MS.gene42649:intron |
| AAGATGATAAGTACTTTGCA+AGG | 0.602451 | 3.4:-92192191 | MS.gene42649:CDS |
| TTTGCTATCGGAGGTACTGG+AGG | 0.604919 | 3.4:-92192346 | MS.gene42649:CDS |
| GAAAGAAGATTGGGACAAGT+GGG | 0.605311 | 3.4:-92190610 | MS.gene42649:CDS |
| TTTCTTTGCAGATGGAGTGG+TGG | 0.605394 | 3.4:-92192216 | MS.gene42649:intron |
| GGAAGAGGAATATGAAGCCA+AGG | 0.609071 | 3.4:-92190511 | MS.gene42649:CDS |
| CTTGCTAAAGAGAAGACTCA+AGG | 0.612535 | 3.4:-92193546 | MS.gene42649:CDS |
| CAAACAAGGAATATGCTCCA+GGG | 0.614249 | 3.4:-92193431 | MS.gene42649:CDS |
| GAGAGGGAAAATCTGAGGGA+CGG | 0.615059 | 3.4:-92190549 | MS.gene42649:CDS |
| TCGTGCTGGTTCAGATACTG+AGG | 0.620611 | 3.4:-92193008 | MS.gene42649:CDS |
| AACGATCAACATTAACAGCA+AGG | 0.625990 | 3.4:+92191777 | None:intergenic |
| GGACGGAGAAGCTAGTGATG+AGG | 0.627430 | 3.4:-92190532 | MS.gene42649:CDS |
| GTTACCAAATACTTCTCACC+AGG | 0.628866 | 3.4:+92192557 | None:intergenic |
| TGGCAACAGTTCACCGTCAG+GGG | 0.629158 | 3.4:-92192778 | MS.gene42649:CDS |
| GCTAGAGAGGGAAAATCTGA+GGG | 0.630478 | 3.4:-92190553 | MS.gene42649:CDS |
| AAGATGTACTGGCAGAGCAA+TGG | 0.630702 | 3.4:-92191806 | MS.gene42649:CDS |
| TAGTATCTACTCTATGCGGA+CGG | 0.640265 | 3.4:-92191576 | MS.gene42649:CDS |
| CTCAATGAAGCAGTAACCCA+AGG | 0.644342 | 3.4:+92193678 | None:intergenic |
| GGCAACAGTTCACCGTCAGG+GGG | 0.645973 | 3.4:-92192777 | MS.gene42649:CDS |
| TTGAATGGGATCCAACTGGA+AGG | 0.646444 | 3.4:-92191364 | MS.gene42649:intron |
| ACAAGAGCGTGAGAAGCGTA+GGG | 0.657658 | 3.4:-92190637 | MS.gene42649:CDS |
| AAACAAGGAATATGCTCCAG+GGG | 0.658157 | 3.4:-92193430 | MS.gene42649:intron |
| TGATAAACATATTTGATGTG+AGG | 0.659557 | 3.4:-92192411 | MS.gene42649:CDS |
| TGTTGATGAGCTTGAAACCA+TGG | 0.663924 | 3.4:-92191417 | MS.gene42649:CDS |
| TGAAGAAGAGAAGCTAGAGA+GGG | 0.666164 | 3.4:-92190565 | MS.gene42649:CDS |
| ACACTCACATTAGCATCTCG+AGG | 0.667806 | 3.4:+92192509 | None:intergenic |
| TTACAGCACGTTTATAAACA+GGG | 0.671673 | 3.4:+92192951 | None:intergenic |
| ACGCATGAGACGATTGAAGG+TGG | 0.677518 | 3.4:+92192733 | None:intergenic |
| CTTCCTCCAGGTGACAACTG+CGG | 0.689197 | 3.4:-92193996 | MS.gene42649:CDS |
| ATTCCGCAGTTGTCACCTGG+AGG | 0.690949 | 3.4:+92193993 | None:intergenic |
| GTTGCCAAGTAAGTACCCAA+AGG | 0.691070 | 3.4:+92192794 | None:intergenic |
| ATATTAGTATCTACTCTATG+CGG | 0.708759 | 3.4:-92191580 | MS.gene42649:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATAGATACTTTTTTTTT+AGG | - | chr3.4:92190896-92190915 | MS.gene42649:intron | 10.0% |
| !!! | TTAATTTAATATCTTTTACT+TGG | - | chr3.4:92191403-92191422 | MS.gene42649:CDS | 10.0% |
| !! | TTCAATATATATAGTTCTTA+TGG | - | chr3.4:92193756-92193775 | MS.gene42649:CDS | 15.0% |
| !! | TTTGGTATAAAATTAACAAA+AGG | + | chr3.4:92191201-92191220 | None:intergenic | 15.0% |
| !!! | AATCATAAAATCTGAAATTA+TGG | + | chr3.4:92190609-92190628 | None:intergenic | 15.0% |
| !!! | ATTTTATACCAAAAACAAAT+AGG | - | chr3.4:92191208-92191227 | MS.gene42649:intron | 15.0% |
| !!! | TATTTTTTGAATTACAGTTT+TGG | - | chr3.4:92191694-92191713 | MS.gene42649:CDS | 15.0% |
| !! | AAAAAATATGACAACCATAA+AGG | + | chr3.4:92191682-92191701 | None:intergenic | 20.0% |
| !! | AAAAATATGACAACCATAAA+GGG | + | chr3.4:92191681-92191700 | None:intergenic | 20.0% |
| !! | AAAGAAAAAAAAAAAACCTG+AGG | + | chr3.4:92191837-92191856 | None:intergenic | 20.0% |
| !! | AGAAAAATTTATAGTCAGAT+TGG | - | chr3.4:92190781-92190800 | MS.gene42649:intron | 20.0% |
| !! | AGTATATGAATATAAATCTC+AGG | - | chr3.4:92191935-92191954 | MS.gene42649:intron | 20.0% |
| !! | ATCATATTTGTAATTCTACA+AGG | + | chr3.4:92191317-92191336 | None:intergenic | 20.0% |
| !! | ATTAAGAGATTAATGATCAA+AGG | + | chr3.4:92191658-92191677 | None:intergenic | 20.0% |
| !! | TGTAGAATTACAAATATGAT+TGG | - | chr3.4:92191317-92191336 | MS.gene42649:intron | 20.0% |
| !! | TTAAGAGATTAATGATCAAA+GGG | + | chr3.4:92191657-92191676 | None:intergenic | 20.0% |
| !! | TTTGAAGGTTGAAAATATAA+TGG | - | chr3.4:92192429-92192448 | MS.gene42649:intron | 20.0% |
| !!! | AAATATTGTACAGCAATTTT+TGG | + | chr3.4:92193711-92193730 | None:intergenic | 20.0% |
| !!! | ATGGTTATAGTTTTTTTACA+TGG | - | chr3.4:92193554-92193573 | MS.gene42649:CDS | 20.0% |
| !!! | TGGTTATAGTTTTTTTACAT+GGG | - | chr3.4:92193555-92193574 | MS.gene42649:CDS | 20.0% |
| !!! | TGTATTATTTGATGTTTTCT+AGG | - | chr3.4:92191630-92191649 | MS.gene42649:CDS | 20.0% |
| !!! | TTTTTAATTTCTGTTCTTGA+TGG | - | chr3.4:92192629-92192648 | MS.gene42649:intron | 20.0% |
| ! | AAGTCAACATTTAATAGCTA+CGG | + | chr3.4:92193288-92193307 | None:intergenic | 25.0% |
| ! | AATAAATACATACACACATG+AGG | + | chr3.4:92192607-92192626 | None:intergenic | 25.0% |
| ! | AATCACTATGTTCTTAAATC+TGG | - | chr3.4:92191366-92191385 | MS.gene42649:CDS | 25.0% |
| ! | ACATACTCACAGAAAATATA+TGG | + | chr3.4:92191033-92191052 | None:intergenic | 25.0% |
| ! | ATAGAGTAGATACTAATATC+AGG | + | chr3.4:92192954-92192973 | None:intergenic | 25.0% |
| ! | ATATTAGTATCTACTCTATG+CGG | - | chr3.4:92192955-92192974 | MS.gene42649:CDS | 25.0% |
| ! | ATGCAAATTCATCACTAAAT+TGG | + | chr3.4:92192296-92192315 | None:intergenic | 25.0% |
| ! | ATGGATAACCAATATAAACA+TGG | + | chr3.4:92193328-92193347 | None:intergenic | 25.0% |
| ! | CATACTCACAGAAAATATAT+GGG | + | chr3.4:92191032-92191051 | None:intergenic | 25.0% |
| ! | CTATGTTTAGTGATTCTTAA+TGG | - | chr3.4:92191433-92191452 | MS.gene42649:CDS | 25.0% |
| ! | GTAGTTAGATACTTAGATTA+AGG | - | chr3.4:92191262-92191281 | MS.gene42649:intron | 25.0% |
| ! | TAAGAATCACTAAACATAGA+AGG | + | chr3.4:92191432-92191451 | None:intergenic | 25.0% |
| ! | TGATAAACATATTTGATGTG+AGG | - | chr3.4:92192124-92192143 | MS.gene42649:CDS | 25.0% |
| ! | TGGATAACCAATATAAACAT+GGG | + | chr3.4:92193327-92193346 | None:intergenic | 25.0% |
| ! | TTAATCTCTTAATCCCTTTA+TGG | - | chr3.4:92191665-92191684 | MS.gene42649:CDS | 25.0% |
| ! | TTAGTAAAGCTACTGAAAAA+AGG | + | chr3.4:92193666-92193685 | None:intergenic | 25.0% |
| ! | TTCAATATATGGTCTTTCAA+TGG | - | chr3.4:92193406-92193425 | MS.gene42649:intron | 25.0% |
| ! | TTGGATGTACAATGTTTATA+TGG | - | chr3.4:92193535-92193554 | MS.gene42649:CDS | 25.0% |
| !! | AAAGTGATGAGAGATTTTAA+GGG | - | chr3.4:92192153-92192172 | MS.gene42649:CDS | 25.0% |
| !! | ATTTTATCCGTGTATTACAA+TGG | - | chr3.4:92193497-92193516 | MS.gene42649:CDS | 25.0% |
| !! | TAAAGTGATGAGAGATTTTA+AGG | - | chr3.4:92192152-92192171 | MS.gene42649:CDS | 25.0% |
| !! | TGGAAAATGGATTCAATATA+TGG | - | chr3.4:92193395-92193414 | MS.gene42649:intron | 25.0% |
| !!! | AAAAAGTATCTATTTACCTG+AGG | + | chr3.4:92190892-92190911 | None:intergenic | 25.0% |
| !!! | AAAATATAATGGATTTCAGC+TGG | - | chr3.4:92192440-92192459 | MS.gene42649:intron | 25.0% |
| !!! | ACAAATATGATTGGTTTACT+TGG | - | chr3.4:92191326-92191345 | MS.gene42649:intron | 25.0% |
| !!! | TAAATTGCAATGGCTATTTT+AGG | - | chr3.4:92190958-92190977 | MS.gene42649:intron | 25.0% |
| !!! | TTCAATGTTTGTTTTACCAT+CGG | - | chr3.4:92190924-92190943 | MS.gene42649:intron | 25.0% |
| !!! | TTTTGAATTACAGTTTTGGA+CGG | - | chr3.4:92191698-92191717 | MS.gene42649:CDS | 25.0% |
| AAAATGTTCAGTATTAGCCA+TGG | + | chr3.4:92193138-92193157 | None:intergenic | 30.0% | |
| AACATACCTGTCGTATAAAA+TGG | + | chr3.4:92193347-92193366 | None:intergenic | 30.0% | |
| AAGATGATAAGTACTTTGCA+AGG | - | chr3.4:92192344-92192363 | MS.gene42649:CDS | 30.0% | |
| AAGCAATATCAACACACATT+TGG | + | chr3.4:92193209-92193228 | None:intergenic | 30.0% | |
| ACATCTTTATCGGATATTGA+AGG | - | chr3.4:92193432-92193451 | MS.gene42649:CDS | 30.0% | |
| AGAGAAAGAATGTTGTAGTT+AGG | + | chr3.4:92192095-92192114 | None:intergenic | 30.0% | |
| AGATACTAATATCAGGCTTA+GGG | + | chr3.4:92192947-92192966 | None:intergenic | 30.0% | |
| AGGAACAAACAATGAAATGA+TGG | + | chr3.4:92192479-92192498 | None:intergenic | 30.0% | |
| ATAAGATCATTGCATTTGCT+TGG | - | chr3.4:92192880-92192899 | MS.gene42649:intron | 30.0% | |
| ATTTCACGAAAAGCTCAAAA+TGG | + | chr3.4:92192068-92192087 | None:intergenic | 30.0% | |
| ATTTGGCAATATTATTGTCG+TGG | - | chr3.4:92190705-92190724 | MS.gene42649:CDS | 30.0% | |
| CGTTGACAAAAAATCTTTGA+AGG | - | chr3.4:92192414-92192433 | MS.gene42649:CDS | 30.0% | |
| GGAACAAACAATGAAATGAT+GGG | + | chr3.4:92192478-92192497 | None:intergenic | 30.0% | |
| GGATAACCAATATAAACATG+GGG | + | chr3.4:92193326-92193345 | None:intergenic | 30.0% | |
| TAAGATCATTGCATTTGCTT+GGG | - | chr3.4:92192881-92192900 | MS.gene42649:intron | 30.0% | |
| TACAACATTCTTTCTCTAGA+GGG | - | chr3.4:92192098-92192117 | MS.gene42649:CDS | 30.0% | |
| TACATCCAAAAGTCATTCTT+TGG | + | chr3.4:92193524-92193543 | None:intergenic | 30.0% | |
| TAGATAATATACCTTCCAGT+TGG | + | chr3.4:92193185-92193204 | None:intergenic | 30.0% | |
| TAGATACTAATATCAGGCTT+AGG | + | chr3.4:92192948-92192967 | None:intergenic | 30.0% | |
| TCAATGGCAAACATCTTTAT+CGG | - | chr3.4:92193422-92193441 | MS.gene42649:intron | 30.0% | |
| TCAGTTCATGAAATGGAAAA+TGG | - | chr3.4:92193382-92193401 | MS.gene42649:intron | 30.0% | |
| TGTAACTTCAGTTCATGAAA+TGG | - | chr3.4:92193375-92193394 | MS.gene42649:intron | 30.0% | |
| TTACAGCACGTTTATAAACA+GGG | + | chr3.4:92191587-92191606 | None:intergenic | 30.0% | |
| TTATGCAACTGATGTTGAAT+GGG | - | chr3.4:92193157-92193176 | MS.gene42649:intron | 30.0% | |
| TTGATGAGGTTAAATTGCAA+TGG | - | chr3.4:92190948-92190967 | MS.gene42649:intron | 30.0% | |
| TTTATGCAACTGATGTTGAA+TGG | - | chr3.4:92193156-92193175 | MS.gene42649:intron | 30.0% | |
| ! | AAAACTTTTACAGCCAACAA+TGG | + | chr3.4:92193590-92193609 | None:intergenic | 30.0% |
| ! | ATGGTCTTTATTTCTCTCAA+AGG | - | chr3.4:92191452-92191471 | MS.gene42649:CDS | 30.0% |
| !! | AAAAAAGGCTTTTGGAAACA+AGG | + | chr3.4:92193651-92193670 | None:intergenic | 30.0% |
| !! | AAAAAGGCTTTTGGAAACAA+GGG | + | chr3.4:92193650-92193669 | None:intergenic | 30.0% |
| !! | AGCATTGATTAATATACCTG+AGG | + | chr3.4:92190568-92190587 | None:intergenic | 30.0% |
| !! | CATAGATTTGCTGTTATTCA+TGG | - | chr3.4:92192915-92192934 | MS.gene42649:intron | 30.0% |
| !!! | AAGCTTATTGATTTTTCACC+TGG | - | chr3.4:92191960-92191979 | MS.gene42649:intron | 30.0% |
| !!! | TACAGCAATTTTTGGTTTGT+GGG | + | chr3.4:92193703-92193722 | None:intergenic | 30.0% |
| !!! | TGCATTTTTTTCTTTGCAGA+TGG | - | chr3.4:92192311-92192330 | MS.gene42649:intron | 30.0% |
| AAACAGAAATTTACCCTAGC+AGG | + | chr3.4:92192523-92192542 | None:intergenic | 35.0% | |
| AACATAGTGATTGAACGTTG+GGG | + | chr3.4:92191358-92191377 | None:intergenic | 35.0% | |
| AACATATTTGATGTGAGGAC+TGG | - | chr3.4:92192129-92192148 | MS.gene42649:CDS | 35.0% | |
| AACGATCAACATTAACAGCA+AGG | + | chr3.4:92192761-92192780 | None:intergenic | 35.0% | |
| ACTGATCCCCATGTTTATAT+TGG | - | chr3.4:92193317-92193336 | MS.gene42649:intron | 35.0% | |
| AGAACATAGTGATTGAACGT+TGG | + | chr3.4:92191360-92191379 | None:intergenic | 35.0% | |
| AGACCACCATATTAGGATTA+TGG | - | chr3.4:92191171-92191190 | MS.gene42649:CDS | 35.0% | |
| AGAGAGATGTACTTGAAAAC+AGG | + | chr3.4:92192234-92192253 | None:intergenic | 35.0% | |
| AGAGATATAATCATTACCCC+TGG | + | chr3.4:92191124-92191143 | None:intergenic | 35.0% | |
| ATTGAAGGATCACTTCTTTC+AGG | - | chr3.4:92193447-92193466 | MS.gene42649:CDS | 35.0% | |
| ATTGTACTAGCAGGATTGAA+AGG | - | chr3.4:92193068-92193087 | MS.gene42649:intron | 35.0% | |
| ATTTAACCTCATCAAACCGA+TGG | + | chr3.4:92190943-92190962 | None:intergenic | 35.0% | |
| CAAAGGAAAATCTGCAACAA+TGG | - | chr3.4:92191469-92191488 | MS.gene42649:CDS | 35.0% | |
| CATTACACATGACCATAGAA+GGG | + | chr3.4:92192551-92192570 | None:intergenic | 35.0% | |
| CATTGAAGTTGAGGAAATAG+TGG | - | chr3.4:92194048-92194067 | MS.gene42649:CDS | 35.0% | |
| CTACAACATTCTTTCTCTAG+AGG | - | chr3.4:92192097-92192116 | MS.gene42649:CDS | 35.0% | |
| CTTACAGCACGTTTATAAAC+AGG | + | chr3.4:92191588-92191607 | None:intergenic | 35.0% | |
| CTTTGGACCATTGTAATACA+CGG | + | chr3.4:92193507-92193526 | None:intergenic | 35.0% | |
| GAACATAGTGATTGAACGTT+GGG | + | chr3.4:92191359-92191378 | None:intergenic | 35.0% | |
| GACCACCATATTAGGATTAT+GGG | - | chr3.4:92191172-92191191 | MS.gene42649:CDS | 35.0% | |
| GATAAGTACTTTGCAAGGAT+GGG | - | chr3.4:92192349-92192368 | MS.gene42649:CDS | 35.0% | |
| GTATGTCACGTTCCTTTATA+CGG | + | chr3.4:92192827-92192846 | None:intergenic | 35.0% | |
| TAGGGTCTTGAAAGAAGATT+GGG | - | chr3.4:92193916-92193935 | MS.gene42649:intron | 35.0% | |
| TGACATACCTATTGAAGTTC+TGG | - | chr3.4:92192839-92192858 | MS.gene42649:intron | 35.0% | |
| TGACGATGATGTTATTCAAG+AGG | - | chr3.4:92190660-92190679 | MS.gene42649:CDS | 35.0% | |
| TGATAAGTACTTTGCAAGGA+TGG | - | chr3.4:92192348-92192367 | MS.gene42649:CDS | 35.0% | |
| TGTTATTCAAGAGGAGAATC+TGG | - | chr3.4:92190669-92190688 | MS.gene42649:CDS | 35.0% | |
| TTATCCATGATCTTCAACCT+TGG | + | chr3.4:92193233-92193252 | None:intergenic | 35.0% | |
| TTGTAATTCTACAAGGAGTG+TGG | + | chr3.4:92191310-92191329 | None:intergenic | 35.0% | |
| TTTGTACAATGGTCACCTTT+GGG | - | chr3.4:92191726-92191745 | MS.gene42649:CDS | 35.0% | |
| ! | AATGAAATGATGGGATCAGT+TGG | + | chr3.4:92192469-92192488 | None:intergenic | 35.0% |
| ! | ACAAAGAAAAGCACATTCAC+AGG | - | chr3.4:92192789-92192808 | MS.gene42649:CDS | 35.0% |
| ! | AGCTACTGAAAAAAGGCTTT+TGG | + | chr3.4:92193659-92193678 | None:intergenic | 35.0% |
| ! | ATGGTCCAAAGAATGACTTT+TGG | - | chr3.4:92193516-92193535 | MS.gene42649:CDS | 35.0% |
| ! | CTTTGAGCTTTTCCGTATAA+AGG | - | chr3.4:92192812-92192831 | MS.gene42649:CDS | 35.0% |
| ! | GAATGTGCTTTTCTTTGTCT+TGG | + | chr3.4:92192787-92192806 | None:intergenic | 35.0% |
| ! | GGCAATTTCATGTTTTCTCA+TGG | - | chr3.4:92191283-92191302 | MS.gene42649:intron | 35.0% |
| ! | GGTTATCCATTTTATACGAC+AGG | - | chr3.4:92193338-92193357 | MS.gene42649:intron | 35.0% |
| ! | TCATTTGAGACCACCATATT+AGG | - | chr3.4:92191164-92191183 | MS.gene42649:CDS | 35.0% |
| ! | TGTGTTGATATTGCTTACCA+AGG | - | chr3.4:92193213-92193232 | MS.gene42649:intron | 35.0% |
| ! | TTTTCAGTAGAAGGATCAAC+AGG | + | chr3.4:92190835-92190854 | None:intergenic | 35.0% |
| ! | TTTTGTACAATGGTCACCTT+TGG | - | chr3.4:92191725-92191744 | MS.gene42649:CDS | 35.0% |
| !! | AAGTGGTGCCTATTTGTTTT+TGG | + | chr3.4:92191219-92191238 | None:intergenic | 35.0% |
| !! | ATTGGTGCTATTAAAGAGGA+TGG | - | chr3.4:92190799-92190818 | MS.gene42649:intron | 35.0% |
| !! | TCAGATTGGTGCTATTAAAG+AGG | - | chr3.4:92190795-92190814 | MS.gene42649:intron | 35.0% |
| !! | TCTGTTCTTGATGGATTTGT+AGG | - | chr3.4:92192638-92192657 | MS.gene42649:intron | 35.0% |
| !!! | AGTGCTGATGATTTTGCTAT+CGG | - | chr3.4:92192177-92192196 | MS.gene42649:CDS | 35.0% |
| !!! | GTACAGCAATTTTTGGTTTG+TGG | + | chr3.4:92193704-92193723 | None:intergenic | 35.0% |
| !!! | TTTTTTCTTTGCAGATGGAG+TGG | - | chr3.4:92192316-92192335 | MS.gene42649:CDS | 35.0% |
| AAACAAGGAATATGCTCCAG+GGG | - | chr3.4:92191105-92191124 | MS.gene42649:CDS | 40.0% | |
| AAGCTTCTCGAATTTCTCCT+TGG | + | chr3.4:92190749-92190768 | None:intergenic | 40.0% | |
| AATGGAATCGAGATCGATAG+AGG | + | chr3.4:92190516-92190535 | None:intergenic | 40.0% | |
| AATTTCTCCTTGGGAACAAC+AGG | + | chr3.4:92190739-92190758 | None:intergenic | 40.0% | |
| ACAATGGCTTACTGATGCTA+AGG | - | chr3.4:92191485-92191504 | MS.gene42649:CDS | 40.0% | |
| ACAGCAAATCTATGTCCCTT+TGG | + | chr3.4:92192909-92192928 | None:intergenic | 40.0% | |
| AGCACGTTTATAAACAGGGT+CGG | + | chr3.4:92191583-92191602 | None:intergenic | 40.0% | |
| AGCTTCTCGAATTTCTCCTT+GGG | + | chr3.4:92190748-92190767 | None:intergenic | 40.0% | |
| ATGAAGAAGAGAAGCTAGAG+AGG | - | chr3.4:92193969-92193988 | MS.gene42649:intron | 40.0% | |
| ATGCAACAGCTTCCATTCAT+TGG | + | chr3.4:92193951-92193970 | None:intergenic | 40.0% | |
| CAAACAAGGAATATGCTCCA+GGG | - | chr3.4:92191104-92191123 | MS.gene42649:CDS | 40.0% | |
| CATCGTCATCACTACATACA+TGG | + | chr3.4:92190648-92190667 | None:intergenic | 40.0% | |
| CATTGAGTACAATACTCCTC+AGG | - | chr3.4:92190873-92190892 | MS.gene42649:intron | 40.0% | |
| CCATTACACATGACCATAGA+AGG | + | chr3.4:92192552-92192571 | None:intergenic | 40.0% | |
| CCTTCTACTGAAAAGTCCTT+GGG | - | chr3.4:92190841-92190860 | MS.gene42649:intron | 40.0% | |
| CCTTCTATGGTCATGTGTAA+TGG | - | chr3.4:92192549-92192568 | MS.gene42649:CDS | 40.0% | |
| CTATTAAAGAGGATGGTCTC+TGG | - | chr3.4:92190806-92190825 | MS.gene42649:intron | 40.0% | |
| CTCAACTTGAAGGATCTCTT+TGG | + | chr3.4:92194080-92194099 | None:intergenic | 40.0% | |
| CTCCCATAATCCTAATATGG+TGG | + | chr3.4:92191177-92191196 | None:intergenic | 40.0% | |
| CTGGAGTTTGATTCTGGATT+TGG | - | chr3.4:92190688-92190707 | MS.gene42649:CDS | 40.0% | |
| CTTACCAAGGTTGAAGATCA+TGG | - | chr3.4:92193226-92193245 | MS.gene42649:intron | 40.0% | |
| CTTGCTAAAGAGAAGACTCA+AGG | - | chr3.4:92190989-92191008 | MS.gene42649:intron | 40.0% | |
| GAAAGAAGATTGGGACAAGT+GGG | - | chr3.4:92193925-92193944 | MS.gene42649:intron | 40.0% | |
| GAAGACAAAGCTTTGCTTCT+CGG | - | chr3.4:92190479-92190498 | MS.gene42649:CDS | 40.0% | |
| GAAGACTCAAGGATACAAAC+TGG | - | chr3.4:92191000-92191019 | MS.gene42649:intron | 40.0% | |
| GCAGGATTGAAAGGTTTCAA+TGG | - | chr3.4:92193077-92193096 | MS.gene42649:intron | 40.0% | |
| GGTCTCCCATAATCCTAATA+TGG | + | chr3.4:92191180-92191199 | None:intergenic | 40.0% | |
| GTAGGGTCTTGAAAGAAGAT+TGG | - | chr3.4:92193915-92193934 | MS.gene42649:intron | 40.0% | |
| GTTACCAAATACTTCTCACC+AGG | + | chr3.4:92191981-92192000 | None:intergenic | 40.0% | |
| TAATCTACCTGTTGTTCCCA+AGG | - | chr3.4:92190729-92190748 | MS.gene42649:CDS | 40.0% | |
| TAGTATCTACTCTATGCGGA+CGG | - | chr3.4:92192959-92192978 | MS.gene42649:CDS | 40.0% | |
| TCAAAGCTCACTACTCTGAA+AGG | - | chr3.4:92193002-92193021 | MS.gene42649:CDS | 40.0% | |
| TCAGCAGCAATGAAACATCT+TGG | + | chr3.4:92193874-92193893 | None:intergenic | 40.0% | |
| TCATTGTTTGTTCCTGAGAC+AGG | - | chr3.4:92192484-92192503 | MS.gene42649:intron | 40.0% | |
| TCCTTCTACTGAAAAGTCCT+TGG | - | chr3.4:92190840-92190859 | MS.gene42649:intron | 40.0% | |
| TGAAAGAAGATTGGGACAAG+TGG | - | chr3.4:92193924-92193943 | MS.gene42649:intron | 40.0% | |
| TGAAGAAGAGAAGCTAGAGA+GGG | - | chr3.4:92193970-92193989 | MS.gene42649:intron | 40.0% | |
| TGGGATTGTGAATCCATTGT+TGG | - | chr3.4:92193574-92193593 | MS.gene42649:intron | 40.0% | |
| TTCCTCAACTTCAATGTCCT+TGG | + | chr3.4:92194044-92194063 | None:intergenic | 40.0% | |
| ! | GAGAATCTGGAGTTTGATTC+TGG | - | chr3.4:92190682-92190701 | MS.gene42649:CDS | 40.0% |
| ! | GTTCAGATACTGAGGTTTTG+TGG | - | chr3.4:92191535-92191554 | MS.gene42649:CDS | 40.0% |
| ! | TCTGTTTTCCTTCCCTTCTA+TGG | - | chr3.4:92192536-92192555 | MS.gene42649:CDS | 40.0% |
| ! | TGTTGATGAGCTTGAAACCA+TGG | - | chr3.4:92193118-92193137 | MS.gene42649:intron | 40.0% |
| !! | CAAAGAGATCCTTCAAGTTG+AGG | - | chr3.4:92194078-92194097 | MS.gene42649:CDS | 40.0% |
| !! | GAAAGGTTTCAATGGACTGT+TGG | - | chr3.4:92193085-92193104 | MS.gene42649:intron | 40.0% |
| !! | GAGTAGTGAGCTTTGAAACT+CGG | + | chr3.4:92192998-92193017 | None:intergenic | 40.0% |
| !! | TTCACCTGGTGAGAAGTATT+TGG | - | chr3.4:92191974-92191993 | MS.gene42649:intron | 40.0% |
| !!! | AGCAGGCAAATGCTTTGTTT+TGG | - | chr3.4:92193027-92193046 | MS.gene42649:CDS | 40.0% |
| !!! | GTTTTACCATCGGTTTGATG+AGG | - | chr3.4:92190934-92190953 | MS.gene42649:intron | 40.0% |
| AACCAGCACGAATCACAAAC+TGG | + | chr3.4:92191518-92191537 | None:intergenic | 45.0% | |
| ACACATGACCATAGAAGGGA+AGG | + | chr3.4:92192547-92192566 | None:intergenic | 45.0% | |
| ACACTCACATTAGCATCTCG+AGG | + | chr3.4:92192029-92192048 | None:intergenic | 45.0% | |
| AGAAATTTACCCTAGCAGGC+TGG | + | chr3.4:92192519-92192538 | None:intergenic | 45.0% | |
| AGAAGCTAGTGATGAGGAAG+AGG | - | chr3.4:92194009-92194028 | MS.gene42649:CDS | 45.0% | |
| AGCCAAGGACATTGAAGTTG+AGG | - | chr3.4:92194039-92194058 | MS.gene42649:CDS | 45.0% | |
| AGCTAGAGAGGGAAAATCTG+AGG | - | chr3.4:92193981-92194000 | MS.gene42649:intron | 45.0% | |
| CCAAACAAGGAATATGCTCC+AGG | - | chr3.4:92191103-92191122 | MS.gene42649:CDS | 45.0% | |
| CCTGGAGCATATTCCTTGTT+TGG | + | chr3.4:92191106-92191125 | None:intergenic | 45.0% | |
| CTCAATGAAGCAGTAACCCA+AGG | + | chr3.4:92190860-92190879 | None:intergenic | 45.0% | |
| CTCTTTCTTGACTGCTGAGA+AGG | - | chr3.4:92193793-92193812 | MS.gene42649:CDS | 45.0% | |
| CTTCTCAGCAGTCAAGAAAG+AGG | + | chr3.4:92193795-92193814 | None:intergenic | 45.0% | |
| GATGTTGAATGGGATCCAAC+TGG | - | chr3.4:92193167-92193186 | MS.gene42649:intron | 45.0% | |
| GCACGTTTATAAACAGGGTC+GGG | + | chr3.4:92191582-92191601 | None:intergenic | 45.0% | |
| GCTAGAGAGGGAAAATCTGA+GGG | - | chr3.4:92193982-92194001 | MS.gene42649:intron | 45.0% | |
| GGAAGAGGAATATGAAGCCA+AGG | - | chr3.4:92194024-92194043 | MS.gene42649:CDS | 45.0% | |
| GTAACGCATGAGACGATTGA+AGG | + | chr3.4:92191808-92191827 | None:intergenic | 45.0% | |
| GTCACCTTTGGGTACTTACT+TGG | - | chr3.4:92191737-92191756 | MS.gene42649:CDS | 45.0% | |
| GTTGCCAAGTAAGTACCCAA+AGG | + | chr3.4:92191744-92191763 | None:intergenic | 45.0% | |
| TCAGTGACTGCAAGATGTAC+TGG | - | chr3.4:92192718-92192737 | MS.gene42649:CDS | 45.0% | |
| TCGAGCTCCAGAACTTCAAT+AGG | + | chr3.4:92192849-92192868 | None:intergenic | 45.0% | |
| TGCCTGAGTTCTTCTTTGCT+GGG | + | chr3.4:92192681-92192700 | None:intergenic | 45.0% | |
| TTAGCATCTCGAGGATTGCT+TGG | + | chr3.4:92192020-92192039 | None:intergenic | 45.0% | |
| TTGAATGGGATCCAACTGGA+AGG | - | chr3.4:92193171-92193190 | MS.gene42649:intron | 45.0% | |
| TTGCCTGAGTTCTTCTTTGC+TGG | + | chr3.4:92192682-92192701 | None:intergenic | 45.0% | |
| TTGTTTGTTCCTGAGACAGG+AGG | - | chr3.4:92192487-92192506 | MS.gene42649:intron | 45.0% | |
| TTTCTTGACTGCTGAGAAGG+AGG | - | chr3.4:92193796-92193815 | MS.gene42649:CDS | 45.0% | |
| TTTCTTTGCAGATGGAGTGG+TGG | - | chr3.4:92192319-92192338 | MS.gene42649:CDS | 45.0% | |
| ! | AAGATGTACTGGCAGAGCAA+TGG | - | chr3.4:92192729-92192748 | MS.gene42649:CDS | 45.0% |
| ! | CCCAAGGACTTTTCAGTAGA+AGG | + | chr3.4:92190844-92190863 | None:intergenic | 45.0% |
| ! | GCATATTCCTTGTTTGGAGG+AGG | + | chr3.4:92191100-92191119 | None:intergenic | 45.0% |
| ! | GGAGCATATTCCTTGTTTGG+AGG | + | chr3.4:92191103-92191122 | None:intergenic | 45.0% |
| !! | GATTTTGCTATCGGAGGTAC+TGG | - | chr3.4:92192186-92192205 | MS.gene42649:CDS | 45.0% |
| !! | GCTGATGATTTTGCTATCGG+AGG | - | chr3.4:92192180-92192199 | MS.gene42649:CDS | 45.0% |
| !! | GGACGGAGAGTTTTGTACAA+TGG | - | chr3.4:92191715-92191734 | MS.gene42649:CDS | 45.0% |
| ACAACCAAGTAGCACGCAAG+TGG | + | chr3.4:92191236-92191255 | None:intergenic | 50.0% | |
| ACGCATGAGACGATTGAAGG+TGG | + | chr3.4:92191805-92191824 | None:intergenic | 50.0% | |
| AGTACAATGAAGCGACCTGC+TGG | + | chr3.4:92193056-92193075 | None:intergenic | 50.0% | |
| CTCGAGGATTGCTTGGTTCA+TGG | + | chr3.4:92192013-92192032 | None:intergenic | 50.0% | |
| GACCAGTTTGTGATTCGTGC+TGG | - | chr3.4:92191513-92191532 | MS.gene42649:CDS | 50.0% | |
| GAGAGGGAAAATCTGAGGGA+CGG | - | chr3.4:92193986-92194005 | MS.gene42649:intron | 50.0% | |
| GATTCCATTCACCTTCCTCC+AGG | - | chr3.4:92190527-92190546 | MS.gene42649:CDS | 50.0% | |
| GCATTTGCTTGGGAGCCAAA+GGG | - | chr3.4:92192891-92192910 | MS.gene42649:intron | 50.0% | |
| GCCTGAGTTCTTCTTTGCTG+GGG | + | chr3.4:92192680-92192699 | None:intergenic | 50.0% | |
| GGTCGCTTCATTGTACTAGC+AGG | - | chr3.4:92193059-92193078 | MS.gene42649:CDS | 50.0% | |
| TCAGCAGTCAAGAAAGAGGC+TGG | + | chr3.4:92193791-92193810 | None:intergenic | 50.0% | |
| TCCCCAGCAAAGAAGAACTC+AGG | - | chr3.4:92192676-92192695 | MS.gene42649:intron | 50.0% | |
| TGCATTTGCTTGGGAGCCAA+AGG | - | chr3.4:92192890-92192909 | MS.gene42649:intron | 50.0% | |
| TTGGCAACAGTTCACCGTCA+GGG | - | chr3.4:92191756-92191775 | MS.gene42649:CDS | 50.0% | |
| TTTGTTCCTGAGACAGGAGG+TGG | - | chr3.4:92192490-92192509 | MS.gene42649:intron | 50.0% | |
| ! | AACAAGAGCGTGAGAAGCGT+AGG | - | chr3.4:92193897-92193916 | MS.gene42649:intron | 50.0% |
| ! | ACAAGAGCGTGAGAAGCGTA+GGG | - | chr3.4:92193898-92193917 | MS.gene42649:intron | 50.0% |
| ! | AGTCAAGAAAGAGGCTGGTC+TGG | + | chr3.4:92193786-92193805 | None:intergenic | 50.0% |
| ! | CACTACTCTGAAAGGCAAGC+AGG | - | chr3.4:92193010-92193029 | MS.gene42649:CDS | 50.0% |
| !! | CATGAAAGTGCCAGACGAGT+GGG | - | chr3.4:92191072-92191091 | MS.gene42649:intron | 50.0% |
| !! | GTCAAGAAAGAGGCTGGTCT+GGG | + | chr3.4:92193785-92193804 | None:intergenic | 50.0% |
| !! | TCATGAAAGTGCCAGACGAG+TGG | - | chr3.4:92191071-92191090 | MS.gene42649:intron | 50.0% |
| !! | TCGTGCTGGTTCAGATACTG+AGG | - | chr3.4:92191527-92191546 | MS.gene42649:CDS | 50.0% |
| !! | TTTGCTATCGGAGGTACTGG+AGG | - | chr3.4:92192189-92192208 | MS.gene42649:CDS | 50.0% |
| !!! | GCTTTGTTTTGGTCACCAGC+AGG | - | chr3.4:92193038-92193057 | MS.gene42649:CDS | 50.0% |
| AGGATTCCGCAGTTGTCACC+TGG | + | chr3.4:92190548-92190567 | None:intergenic | 55.0% | |
| AGGTGGTAACCAGCCTGCTA+GGG | - | chr3.4:92192507-92192526 | MS.gene42649:intron | 55.0% | |
| ATTCCGCAGTTGTCACCTGG+AGG | + | chr3.4:92190545-92190564 | None:intergenic | 55.0% | |
| CATGCGTTACGCACATCCTC+AGG | - | chr3.4:92191818-92191837 | MS.gene42649:CDS | 55.0% | |
| CTTCCTCCAGGTGACAACTG+CGG | - | chr3.4:92190539-92190558 | MS.gene42649:CDS | 55.0% | |
| CTTGGCAACAGTTCACCGTC+AGG | - | chr3.4:92191755-92191774 | MS.gene42649:CDS | 55.0% | |
| GGACGGAGAAGCTAGTGATG+AGG | - | chr3.4:92194003-92194022 | MS.gene42649:CDS | 55.0% | |
| GGGACAAGTGGGCCAATGAA+TGG | - | chr3.4:92193936-92193955 | MS.gene42649:intron | 55.0% | |
| GTCACCTGGAGGAAGGTGAA+TGG | + | chr3.4:92190534-92190553 | None:intergenic | 55.0% | |
| GTGACAACTGCGGAATCCTC+AGG | - | chr3.4:92190549-92190568 | MS.gene42649:CDS | 55.0% | |
| TGGCAACAGTTCACCGTCAG+GGG | - | chr3.4:92191757-92191776 | MS.gene42649:CDS | 55.0% | |
| TGGTTACCACCTCCTGTCTC+AGG | + | chr3.4:92192499-92192518 | None:intergenic | 55.0% | |
| !! | GAGGTGTCACTGGAGTGTCA+TGG | - | chr3.4:92192208-92192227 | MS.gene42649:CDS | 55.0% |
| ATGCGGACGGCTCAGAACAC+TGG | - | chr3.4:92192972-92192991 | MS.gene42649:CDS | 60.0% | |
| CGCAGTTGTCACCTGGAGGA+AGG | + | chr3.4:92190541-92190560 | None:intergenic | 60.0% | |
| GAGGTGGTAACCAGCCTGCT+AGG | - | chr3.4:92192506-92192525 | MS.gene42649:intron | 60.0% | |
| GGCAACAGTTCACCGTCAGG+GGG | - | chr3.4:92191758-92191777 | MS.gene42649:CDS | 60.0% | |
| GTGGGCTCCTCCTCCAAACA+AGG | - | chr3.4:92191090-92191109 | MS.gene42649:CDS | 60.0% | |
| ! | GGCACCACTTGCGTGCTACT+TGG | - | chr3.4:92191229-92191248 | MS.gene42649:intron | 60.0% |
| !! | GGAGGTACTGGAGGTGTCAC+TGG | - | chr3.4:92192198-92192217 | MS.gene42649:CDS | 60.0% |
| ACCGTCAGGGGGCAGCAGTT+TGG | - | chr3.4:92191769-92191788 | MS.gene42649:CDS | 65.0% | |
| CCCAAACTGCTGCCCCCTGA+CGG | + | chr3.4:92191773-92191792 | None:intergenic | 65.0% | |
| CCGTCAGGGGGCAGCAGTTT+GGG | - | chr3.4:92191770-92191789 | MS.gene42649:CDS | 65.0% | |
| CGTCAGGGGGCAGCAGTTTG+GGG | - | chr3.4:92191771-92191790 | MS.gene42649:CDS | 65.0% | |
| CAGGGGGCAGCAGTTTGGGG+AGG | - | chr3.4:92191774-92191793 | MS.gene42649:CDS | 70.0% | |
| GGAGGAGGAGCCCACTCGTC+TGG | + | chr3.4:92191085-92191104 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 92190449 | 92194108 | 92190449 | ID=MS.gene42649 |
| chr3.4 | mRNA | 92190449 | 92194108 | 92190449 | ID=MS.gene42649.t1;Parent=MS.gene42649 |
| chr3.4 | exon | 92193987 | 92194108 | 92193987 | ID=MS.gene42649.t1.exon1;Parent=MS.gene42649.t1 |
| chr3.4 | CDS | 92193987 | 92194108 | 92193987 | ID=cds.MS.gene42649.t1;Parent=MS.gene42649.t1 |
| chr3.4 | exon | 92193663 | 92193900 | 92193663 | ID=MS.gene42649.t1.exon2;Parent=MS.gene42649.t1 |
| chr3.4 | CDS | 92193663 | 92193900 | 92193663 | ID=cds.MS.gene42649.t1;Parent=MS.gene42649.t1 |
| chr3.4 | exon | 92193431 | 92193577 | 92193431 | ID=MS.gene42649.t1.exon3;Parent=MS.gene42649.t1 |
| chr3.4 | CDS | 92193431 | 92193577 | 92193431 | ID=cds.MS.gene42649.t1;Parent=MS.gene42649.t1 |
| chr3.4 | exon | 92192955 | 92193083 | 92192955 | ID=MS.gene42649.t1.exon4;Parent=MS.gene42649.t1 |
| chr3.4 | CDS | 92192955 | 92193083 | 92192955 | ID=cds.MS.gene42649.t1;Parent=MS.gene42649.t1 |
| chr3.4 | exon | 92192718 | 92192846 | 92192718 | ID=MS.gene42649.t1.exon5;Parent=MS.gene42649.t1 |
| chr3.4 | CDS | 92192718 | 92192846 | 92192718 | ID=cds.MS.gene42649.t1;Parent=MS.gene42649.t1 |
| chr3.4 | exon | 92192517 | 92192600 | 92192517 | ID=MS.gene42649.t1.exon6;Parent=MS.gene42649.t1 |
| chr3.4 | CDS | 92192517 | 92192600 | 92192517 | ID=cds.MS.gene42649.t1;Parent=MS.gene42649.t1 |
| chr3.4 | exon | 92192316 | 92192440 | 92192316 | ID=MS.gene42649.t1.exon7;Parent=MS.gene42649.t1 |
| chr3.4 | CDS | 92192316 | 92192440 | 92192316 | ID=cds.MS.gene42649.t1;Parent=MS.gene42649.t1 |
| chr3.4 | exon | 92192029 | 92192227 | 92192029 | ID=MS.gene42649.t1.exon8;Parent=MS.gene42649.t1 |
| chr3.4 | CDS | 92192029 | 92192227 | 92192029 | ID=cds.MS.gene42649.t1;Parent=MS.gene42649.t1 |
| chr3.4 | exon | 92191365 | 92191897 | 92191365 | ID=MS.gene42649.t1.exon9;Parent=MS.gene42649.t1 |
| chr3.4 | CDS | 92191365 | 92191897 | 92191365 | ID=cds.MS.gene42649.t1;Parent=MS.gene42649.t1 |
| chr3.4 | exon | 92191089 | 92191197 | 92191089 | ID=MS.gene42649.t1.exon10;Parent=MS.gene42649.t1 |
| chr3.4 | CDS | 92191089 | 92191197 | 92191089 | ID=cds.MS.gene42649.t1;Parent=MS.gene42649.t1 |
| chr3.4 | exon | 92190449 | 92190787 | 92190449 | ID=MS.gene42649.t1.exon11;Parent=MS.gene42649.t1 |
| chr3.4 | CDS | 92190449 | 92190787 | 92190449 | ID=cds.MS.gene42649.t1;Parent=MS.gene42649.t1 |
| Gene Sequence |
| Protein sequence |
