Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43057.t1 | XP_003596783.1 | 94.5 | 366 | 20 | 0 | 1 | 366 | 77 | 442 | 2.40E-197 | 698 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43057.t1 | Q93ZB9 | 58.9 | 365 | 150 | 0 | 2 | 366 | 80 | 444 | 7.2e-126 | 451.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43057.t1 | G7IRD9 | 94.5 | 366 | 20 | 0 | 1 | 366 | 77 | 442 | 1.7e-197 | 698.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049151 | MS.gene43057 | 0.807354 | 5.27E-50 | -1.69E-46 |
MS.gene049260 | MS.gene43057 | 0.824857 | 6.43E-54 | -1.69E-46 |
MS.gene049491 | MS.gene43057 | 0.801365 | 9.32E-49 | -1.69E-46 |
MS.gene049758 | MS.gene43057 | 0.849276 | 3.59E-60 | -1.69E-46 |
MS.gene050099 | MS.gene43057 | 0.80829 | 3.33E-50 | -1.69E-46 |
MS.gene050128 | MS.gene43057 | 0.82492 | 6.22E-54 | -1.69E-46 |
MS.gene050301 | MS.gene43057 | 0.860851 | 1.55E-63 | -1.69E-46 |
MS.gene050397 | MS.gene43057 | 0.811627 | 6.37E-51 | -1.69E-46 |
MS.gene05101 | MS.gene43057 | 0.818249 | 2.16E-52 | -1.69E-46 |
MS.gene051471 | MS.gene43057 | 0.821375 | 4.18E-53 | -1.69E-46 |
MS.gene051662 | MS.gene43057 | 0.802239 | 6.17E-49 | -1.69E-46 |
MS.gene051663 | MS.gene43057 | 0.826481 | 2.65E-54 | -1.69E-46 |
MS.gene051860 | MS.gene43057 | 0.833953 | 3.97E-56 | -1.69E-46 |
MS.gene052078 | MS.gene43057 | 0.83812 | 3.47E-57 | -1.69E-46 |
MS.gene052178 | MS.gene43057 | 0.861635 | 8.93E-64 | -1.69E-46 |
MS.gene052188 | MS.gene43057 | 0.810857 | 9.36E-51 | -1.69E-46 |
MS.gene052253 | MS.gene43057 | 0.800782 | 1.23E-48 | -1.69E-46 |
MS.gene052310 | MS.gene43057 | 0.800889 | 1.17E-48 | -1.69E-46 |
MS.gene052326 | MS.gene43057 | 0.800802 | 1.21E-48 | -1.69E-46 |
MS.gene052340 | MS.gene43057 | 0.852789 | 3.67E-61 | -1.69E-46 |
MS.gene053209 | MS.gene43057 | 0.803741 | 3.02E-49 | -1.69E-46 |
MS.gene053557 | MS.gene43057 | 0.826434 | 2.72E-54 | -1.69E-46 |
MS.gene053836 | MS.gene43057 | 0.863087 | 3.20E-64 | -1.69E-46 |
MS.gene054011 | MS.gene43057 | 0.807836 | 4.16E-50 | -1.69E-46 |
MS.gene054012 | MS.gene43057 | 0.803512 | 3.37E-49 | -1.69E-46 |
MS.gene054013 | MS.gene43057 | 0.804119 | 2.52E-49 | -1.69E-46 |
MS.gene054184 | MS.gene43057 | 0.808444 | 3.09E-50 | -1.69E-46 |
MS.gene054185 | MS.gene43057 | 0.808797 | 2.60E-50 | -1.69E-46 |
MS.gene054214 | MS.gene43057 | 0.800537 | 1.38E-48 | -1.69E-46 |
MS.gene054473 | MS.gene43057 | 0.817255 | 3.62E-52 | -1.69E-46 |
MS.gene05455 | MS.gene43057 | 0.801967 | 7.01E-49 | -1.69E-46 |
MS.gene055133 | MS.gene43057 | 0.815245 | 1.02E-51 | -1.69E-46 |
MS.gene055277 | MS.gene43057 | 0.85933 | 4.46E-63 | -1.69E-46 |
MS.gene055390 | MS.gene43057 | 0.821399 | 4.12E-53 | -1.69E-46 |
MS.gene055422 | MS.gene43057 | 0.857366 | 1.71E-62 | -1.69E-46 |
MS.gene055428 | MS.gene43057 | 0.867181 | 1.65E-65 | -1.69E-46 |
MS.gene055604 | MS.gene43057 | 0.830181 | 3.39E-55 | -1.69E-46 |
MS.gene055712 | MS.gene43057 | 0.813661 | 2.29E-51 | -1.69E-46 |
MS.gene056191 | MS.gene43057 | 0.82962 | 4.65E-55 | -1.69E-46 |
MS.gene056612 | MS.gene43057 | 0.831273 | 1.83E-55 | -1.69E-46 |
MS.gene05702 | MS.gene43057 | 0.847783 | 9.30E-60 | -1.69E-46 |
MS.gene057121 | MS.gene43057 | 0.819095 | 1.39E-52 | -1.69E-46 |
MS.gene05733 | MS.gene43057 | 0.803145 | 4.01E-49 | -1.69E-46 |
MS.gene057439 | MS.gene43057 | 0.808717 | 2.70E-50 | -1.69E-46 |
MS.gene057754 | MS.gene43057 | 0.8267 | 2.35E-54 | -1.69E-46 |
MS.gene057796 | MS.gene43057 | 0.805744 | 1.15E-49 | -1.69E-46 |
MS.gene058002 | MS.gene43057 | 0.848786 | 4.91E-60 | -1.69E-46 |
MS.gene05811 | MS.gene43057 | 0.860997 | 1.40E-63 | -1.69E-46 |
MS.gene058142 | MS.gene43057 | 0.812338 | 4.46E-51 | -1.69E-46 |
MS.gene058236 | MS.gene43057 | 0.802789 | 4.75E-49 | -1.69E-46 |
MS.gene05842 | MS.gene43057 | 0.804672 | 1.93E-49 | -1.69E-46 |
MS.gene058660 | MS.gene43057 | 0.804107 | 2.53E-49 | -1.69E-46 |
MS.gene058749 | MS.gene43057 | 0.818767 | 1.65E-52 | -1.69E-46 |
MS.gene05907 | MS.gene43057 | 0.846523 | 2.06E-59 | -1.69E-46 |
MS.gene059294 | MS.gene43057 | 0.810961 | 8.88E-51 | -1.69E-46 |
MS.gene059518 | MS.gene43057 | 0.859107 | 5.20E-63 | -1.69E-46 |
MS.gene059597 | MS.gene43057 | 0.817408 | 3.35E-52 | -1.69E-46 |
MS.gene059692 | MS.gene43057 | 0.804031 | 2.63E-49 | -1.69E-46 |
MS.gene05984 | MS.gene43057 | 0.853162 | 2.87E-61 | -1.69E-46 |
MS.gene059894 | MS.gene43057 | 0.876793 | 1.05E-68 | -1.69E-46 |
MS.gene059974 | MS.gene43057 | 0.833584 | 4.90E-56 | -1.69E-46 |
MS.gene060005 | MS.gene43057 | 0.815687 | 8.14E-52 | -1.69E-46 |
MS.gene06037 | MS.gene43057 | 0.856077 | 4.10E-62 | -1.69E-46 |
MS.gene060476 | MS.gene43057 | 0.832521 | 9.01E-56 | -1.69E-46 |
MS.gene061049 | MS.gene43057 | 0.864549 | 1.12E-64 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43057.t1 | MTR_2g086090 | 94.536 | 366 | 20 | 0 | 1 | 366 | 77 | 442 | 0.0 | 723 |
MS.gene43057.t1 | MTR_4g053785 | 72.207 | 367 | 101 | 1 | 1 | 366 | 75 | 441 | 0.0 | 574 |
MS.gene43057.t1 | MTR_2g086070 | 69.672 | 366 | 110 | 1 | 2 | 366 | 76 | 441 | 0.0 | 547 |
MS.gene43057.t1 | MTR_4g053880 | 68.306 | 366 | 115 | 1 | 2 | 366 | 77 | 442 | 0.0 | 541 |
MS.gene43057.t1 | MTR_4g054820 | 45.553 | 371 | 196 | 2 | 2 | 366 | 73 | 443 | 6.45e-124 | 366 |
MS.gene43057.t1 | MTR_4g053900 | 46.900 | 371 | 192 | 4 | 1 | 366 | 75 | 445 | 5.29e-118 | 351 |
MS.gene43057.t1 | MTR_5g072540 | 44.474 | 371 | 199 | 4 | 1 | 366 | 75 | 443 | 4.31e-114 | 341 |
MS.gene43057.t1 | MTR_5g045330 | 44.173 | 369 | 186 | 4 | 2 | 366 | 76 | 428 | 1.93e-105 | 318 |
MS.gene43057.t1 | MTR_6g034620 | 45.130 | 308 | 133 | 5 | 63 | 366 | 4 | 279 | 1.33e-85 | 262 |
MS.gene43057.t1 | MTR_1g054635 | 39.257 | 377 | 209 | 7 | 2 | 365 | 190 | 559 | 1.34e-80 | 258 |
MS.gene43057.t1 | MTR_4g054220 | 47.143 | 210 | 108 | 1 | 2 | 208 | 73 | 282 | 5.10e-68 | 216 |
MS.gene43057.t1 | MTR_5g072550 | 44.000 | 200 | 110 | 2 | 169 | 366 | 1 | 200 | 2.06e-56 | 185 |
MS.gene43057.t1 | MTR_4g054240 | 43.125 | 160 | 90 | 1 | 208 | 366 | 20 | 179 | 1.94e-34 | 127 |
MS.gene43057.t1 | MTR_6g039280 | 39.698 | 199 | 88 | 2 | 169 | 366 | 1 | 168 | 1.60e-33 | 124 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43057.t1 | AT4G33790 | 58.904 | 365 | 150 | 0 | 2 | 366 | 80 | 444 | 1.02e-162 | 465 |
MS.gene43057.t1 | AT4G33790 | 60.366 | 328 | 130 | 0 | 39 | 366 | 4 | 331 | 1.10e-151 | 432 |
MS.gene43057.t1 | AT5G22500 | 52.747 | 364 | 169 | 2 | 4 | 366 | 78 | 439 | 4.23e-140 | 407 |
MS.gene43057.t1 | AT3G44540 | 51.648 | 364 | 175 | 1 | 4 | 366 | 78 | 441 | 7.90e-139 | 404 |
MS.gene43057.t1 | AT3G44550 | 50.689 | 363 | 175 | 3 | 7 | 366 | 81 | 442 | 8.87e-133 | 389 |
MS.gene43057.t1 | AT5G22500 | 53.271 | 321 | 147 | 2 | 4 | 323 | 78 | 396 | 5.58e-126 | 368 |
MS.gene43057.t1 | AT3G44550 | 50.599 | 334 | 161 | 3 | 36 | 366 | 1 | 333 | 8.20e-123 | 359 |
MS.gene43057.t1 | AT3G44560 | 49.311 | 363 | 180 | 3 | 7 | 366 | 81 | 442 | 5.02e-121 | 357 |
MS.gene43057.t1 | AT3G44560 | 49.036 | 363 | 181 | 3 | 7 | 366 | 81 | 442 | 1.41e-119 | 355 |
MS.gene43057.t1 | AT5G22420 | 49.390 | 328 | 161 | 4 | 41 | 366 | 6 | 330 | 1.89e-114 | 338 |
MS.gene43057.t1 | AT3G44560 | 49.068 | 322 | 160 | 3 | 7 | 325 | 81 | 401 | 7.40e-108 | 322 |
MS.gene43057.t1 | AT5G22420 | 48.254 | 315 | 158 | 4 | 54 | 366 | 3 | 314 | 1.27e-106 | 317 |
MS.gene43057.t1 | AT5G22420 | 48.254 | 315 | 158 | 4 | 54 | 366 | 3 | 314 | 1.27e-106 | 317 |
MS.gene43057.t1 | AT5G22420 | 43.631 | 369 | 202 | 5 | 1 | 366 | 1 | 366 | 1.72e-106 | 318 |
MS.gene43057.t1 | AT3G44540 | 54.701 | 234 | 106 | 0 | 4 | 237 | 78 | 311 | 4.24e-94 | 283 |
MS.gene43057.t1 | AT3G44540 | 54.701 | 234 | 106 | 0 | 4 | 237 | 78 | 311 | 4.24e-94 | 283 |
MS.gene43057.t1 | AT5G22420 | 46.953 | 279 | 143 | 4 | 90 | 366 | 4 | 279 | 4.81e-89 | 271 |
MS.gene43057.t1 | AT5G22420 | 46.565 | 262 | 135 | 4 | 107 | 366 | 2 | 260 | 9.05e-82 | 252 |
MS.gene43057.t1 | AT5G22420 | 46.565 | 262 | 135 | 4 | 107 | 366 | 2 | 260 | 9.05e-82 | 252 |
MS.gene43057.t1 | AT3G11980 | 39.633 | 381 | 203 | 9 | 2 | 365 | 194 | 564 | 7.15e-81 | 259 |
MS.gene43057.t1 | AT3G56700 | 36.828 | 372 | 203 | 9 | 2 | 365 | 147 | 494 | 2.46e-68 | 224 |
MS.gene43057.t1 | AT3G56700 | 34.140 | 372 | 192 | 10 | 2 | 365 | 147 | 473 | 3.31e-56 | 192 |
Find 97 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCGCTACCTTCTTCCATTAA+AGG | 0.131189 | 2.4:+14008392 | MS.gene43057:CDS |
AACAGATGTTATTATTAATT+TGG | 0.143261 | 2.4:+14001169 | MS.gene43057:CDS |
ATCCATAGTCATGAAGATTT+TGG | 0.203708 | 2.4:-14008260 | None:intergenic |
GGAAATATCTTCCCTTAAAA+TGG | 0.231119 | 2.4:-14001141 | None:intergenic |
CAAAGATGGAACGGTTATTA+AGG | 0.239091 | 2.4:+14008314 | MS.gene43057:CDS |
GACAGCTTAGCTGTTGCTTA+TGG | 0.246400 | 2.4:+14007177 | MS.gene43057:CDS |
CCTTTCCCTGGTTGGGTTGA+GGG | 0.279567 | 2.4:+14003996 | MS.gene43057:CDS |
ATATAAATAAGAACCTTTAA+TGG | 0.288279 | 2.4:-14008405 | None:intergenic |
TACCAAAATCTTCATGACTA+TGG | 0.312887 | 2.4:+14008258 | MS.gene43057:CDS |
CTCTTTGGCAATTCATTAAA+CGG | 0.323564 | 2.4:+14002018 | MS.gene43057:CDS |
TAATGAATTGCCAAAGAGAT+AGG | 0.327688 | 2.4:-14002013 | None:intergenic |
CATTTATTAGGGACTCAAAT+TGG | 0.334480 | 2.4:+14008938 | MS.gene43057:intron |
CTGGTTGGGTTGAGGGTCTC+AGG | 0.357068 | 2.4:+14004003 | MS.gene43057:CDS |
AGCGAATGAATATGTATCTT+TGG | 0.357459 | 2.4:-14008374 | None:intergenic |
ACCTTTCCCTGGTTGGGTTG+AGG | 0.362668 | 2.4:+14003995 | MS.gene43057:CDS |
ACAGCTTAGCTGTTGCTTAT+GGG | 0.368385 | 2.4:+14007178 | MS.gene43057:CDS |
CAGACCTTATTTATTCTTCA+AGG | 0.368451 | 2.4:+14009049 | MS.gene43057:CDS |
CTAGAGAGTCCCTATCTCTT+TGG | 0.373455 | 2.4:+14002003 | MS.gene43057:CDS |
TATTAAGGTTGGCAAAATTA+CGG | 0.377580 | 2.4:+14008329 | MS.gene43057:CDS |
GAACTTATCTTGAGCTCAAC+AGG | 0.382271 | 2.4:+14008991 | MS.gene43057:CDS |
AAGAGAACCTTTCCCTGGTT+GGG | 0.391356 | 2.4:+14003989 | MS.gene43057:CDS |
TTTGGATGACTTGGGTTTGA+AGG | 0.398771 | 2.4:+14001115 | MS.gene43057:CDS |
GCAATTGAAAGGAAACTTAT+CGG | 0.399687 | 2.4:+14003929 | MS.gene43057:CDS |
GATAAGTTCCCTGAAAATAC+TGG | 0.402816 | 2.4:-14008977 | None:intergenic |
ATGCCCTTGAAGAATAAATA+AGG | 0.404261 | 2.4:-14009053 | None:intergenic |
CACTTTGACTTCACGTTCCG+TGG | 0.406439 | 2.4:-14002115 | None:intergenic |
AATTTCAGGGCCAATGTGTA+TGG | 0.408387 | 2.4:+14003855 | MS.gene43057:intron |
GCATTGGATCTAAATACATT+TGG | 0.410639 | 2.4:+14001767 | MS.gene43057:CDS |
TGTAATGCCTAGGTCCTTCA+TGG | 0.426790 | 2.4:-14002139 | None:intergenic |
TTTGTAAACACGTATGTGTT+TGG | 0.431767 | 2.4:-14003882 | None:intergenic |
AGATATCACTTTGGATGACT+TGG | 0.447134 | 2.4:+14001106 | MS.gene43057:CDS |
AATATTTCAAAGCAAAACCT+TGG | 0.454010 | 2.4:+14008286 | MS.gene43057:CDS |
GTGCTTGTCCATGTATCAAC+AGG | 0.456096 | 2.4:+14001836 | MS.gene43057:CDS |
GATGGAACGGTTATTAAGGT+TGG | 0.459380 | 2.4:+14008318 | MS.gene43057:CDS |
GAAAAGTTGACTGTGGTGCC+TGG | 0.493185 | 2.4:+14001083 | MS.gene43057:CDS |
CTGAGACCCTCAACCCAACC+AGG | 0.496077 | 2.4:-14004002 | None:intergenic |
TAATTTCAGCTTATGTATGC+GGG | 0.497684 | 2.4:+14001962 | MS.gene43057:intron |
TAAGAGAACCTTTCCCTGGT+TGG | 0.498365 | 2.4:+14003988 | MS.gene43057:CDS |
AATAATAACATCTGTTTGAG+AGG | 0.499739 | 2.4:-14001162 | None:intergenic |
AATTCATTAAACGGTGTGGC+TGG | 0.501593 | 2.4:+14002027 | MS.gene43057:CDS |
TACGTGTTTACAAAGGCACT+TGG | 0.506284 | 2.4:+14003891 | MS.gene43057:CDS |
CCACCAACCGCATCACAACT+TGG | 0.506880 | 2.4:-14009019 | None:intergenic |
TAAGAACCTTTAATGGAAGA+AGG | 0.508072 | 2.4:-14008398 | None:intergenic |
AATAATGACCTGTTGATACA+TGG | 0.514278 | 2.4:-14001844 | None:intergenic |
AGACCTTATTTATTCTTCAA+GGG | 0.517769 | 2.4:+14009050 | MS.gene43057:CDS |
ATGCAAATCAACCTAGTGAT+GGG | 0.518277 | 2.4:+14008196 | MS.gene43057:CDS |
GTTCCATCTTTGTTTATCCA+AGG | 0.518992 | 2.4:-14008303 | None:intergenic |
TTAGCTGTTGCTTATGGGAA+AGG | 0.524036 | 2.4:+14007183 | MS.gene43057:CDS |
AATGTACTTGTGACAATGGC+AGG | 0.524668 | 2.4:-14003966 | None:intergenic |
ACGTGTTTACAAAGGCACTT+GGG | 0.525068 | 2.4:+14003892 | MS.gene43057:CDS |
GATATCACTTTGGATGACTT+GGG | 0.525651 | 2.4:+14001107 | MS.gene43057:CDS |
TGAAGGACCTAGGCATTACA+AGG | 0.533329 | 2.4:+14002142 | MS.gene43057:CDS |
CAATGCAATGTTAGTAGCTA+TGG | 0.533514 | 2.4:+14008167 | MS.gene43057:CDS |
AATGAATTGCCAAAGAGATA+GGG | 0.534867 | 2.4:-14002012 | None:intergenic |
AAACCTTGGATAAACAAAGA+TGG | 0.538545 | 2.4:+14008300 | MS.gene43057:CDS |
TTAGGTGAGCTACAAGAGAA+AGG | 0.539799 | 2.4:+14002090 | MS.gene43057:CDS |
GCATTGACCACCATGTCAGC+TGG | 0.546348 | 2.4:-14008150 | None:intergenic |
CCAAGTTGTGATGCGGTTGG+TGG | 0.550260 | 2.4:+14009019 | MS.gene43057:CDS |
AGCAACAGCTAAGCTGTCAA+TGG | 0.551045 | 2.4:-14007172 | None:intergenic |
TCACAAACCTTGTAATGCCT+AGG | 0.551512 | 2.4:-14002149 | None:intergenic |
ACATTAAGAGAACCTTTCCC+TGG | 0.552357 | 2.4:+14003984 | MS.gene43057:CDS |
TCATCCAAAGTGATATCTCC+AGG | 0.554276 | 2.4:-14001101 | None:intergenic |
CATGCAAATCAACCTAGTGA+TGG | 0.558246 | 2.4:+14008195 | MS.gene43057:CDS |
TCTTTGGAAGCTTGCCATGT+TGG | 0.559132 | 2.4:-14008358 | None:intergenic |
TGAAGTCAAAGTGGCCATGA+AGG | 0.560246 | 2.4:+14002125 | MS.gene43057:CDS |
TTAATTTCAGCTTATGTATG+CGG | 0.563809 | 2.4:+14001961 | MS.gene43057:intron |
TCAGGGCCAATGTGTATGGA+TGG | 0.570871 | 2.4:+14003859 | MS.gene43057:intron |
GGCACTTGGGGAGATGCTTG+TGG | 0.574855 | 2.4:+14003905 | MS.gene43057:CDS |
CAACTACTAACTTTGATGAA+AGG | 0.583532 | 2.4:+14001195 | MS.gene43057:CDS |
GTACAGGTATGATATAGCAT+TGG | 0.584357 | 2.4:+14001751 | MS.gene43057:intron |
TAAGAAGATACCAGCTGACA+TGG | 0.585081 | 2.4:+14008140 | MS.gene43057:intron |
ATGCTTGTGGAGCAATTGAA+AGG | 0.587967 | 2.4:+14003918 | MS.gene43057:CDS |
TTTCAATGGGTTTCTGACAG+AGG | 0.588834 | 2.4:-14008235 | None:intergenic |
TCTTAATGTACTTGTGACAA+TGG | 0.590191 | 2.4:-14003970 | None:intergenic |
CCCTCAACCCAACCAGGGAA+AGG | 0.593436 | 2.4:-14003996 | None:intergenic |
TATGTATGCGGGGAAAGAAG+TGG | 0.596022 | 2.4:+14001973 | MS.gene43057:CDS |
TGCAATGTTAGTAGCTATGG+TGG | 0.599951 | 2.4:+14008170 | MS.gene43057:CDS |
TGGCAATTCATTAAACGGTG+TGG | 0.607167 | 2.4:+14002023 | MS.gene43057:CDS |
ACATGATATACCCCATCACT+AGG | 0.613395 | 2.4:-14008207 | None:intergenic |
AGTGATGGGGTATATCATGT+AGG | 0.616657 | 2.4:+14008210 | MS.gene43057:CDS |
GGTGCCTGGAGATATCACTT+TGG | 0.626088 | 2.4:+14001097 | MS.gene43057:CDS |
TTGGATAAACAAAGATGGAA+CGG | 0.630709 | 2.4:+14008305 | MS.gene43057:CDS |
CGTGTTTACAAAGGCACTTG+GGG | 0.632335 | 2.4:+14003893 | MS.gene43057:CDS |
AAAGTGGCCATGAAGGACCT+AGG | 0.633310 | 2.4:+14002132 | MS.gene43057:CDS |
AATTTCAGCTTATGTATGCG+GGG | 0.647650 | 2.4:+14001963 | MS.gene43057:intron |
GTTTGGCCATCCATACACAT+TGG | 0.647933 | 2.4:-14003865 | None:intergenic |
CACGGAACGTGAAGTCAAAG+TGG | 0.648254 | 2.4:+14002116 | MS.gene43057:CDS |
TGCAAATCAACCTAGTGATG+GGG | 0.650670 | 2.4:+14008197 | MS.gene43057:CDS |
AAACACATACGTGTTTACAA+AGG | 0.652825 | 2.4:+14003884 | MS.gene43057:CDS |
TATTTCGGAAAAGTTGACTG+TGG | 0.654879 | 2.4:+14001076 | MS.gene43057:CDS |
AATTACGGTATTAACCAACA+TGG | 0.665282 | 2.4:+14008344 | MS.gene43057:CDS |
TATCAACGGTGTTGTTGATG+CGG | 0.670674 | 2.4:+14007230 | MS.gene43057:CDS |
GGAAGATCCAAGTTGTGATG+CGG | 0.673834 | 2.4:+14009012 | MS.gene43057:CDS |
GATCCAAGTTGTGATGCGGT+TGG | 0.680098 | 2.4:+14009016 | MS.gene43057:CDS |
TGAGACCCTCAACCCAACCA+GGG | 0.682409 | 2.4:-14004001 | None:intergenic |
GCTACAAGAGAAAGGAGCCA+CGG | 0.693334 | 2.4:+14002098 | MS.gene43057:CDS |
GAAGATACCAGCTGACATGG+TGG | 0.699544 | 2.4:+14008143 | MS.gene43057:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 14001053 | 14009079 | 14001053 | ID=MS.gene43057 |
chr2.4 | mRNA | 14001053 | 14009079 | 14001053 | ID=MS.gene43057.t1;Parent=MS.gene43057 |
chr2.4 | exon | 14001053 | 14001216 | 14001053 | ID=MS.gene43057.t1.exon1;Parent=MS.gene43057.t1 |
chr2.4 | CDS | 14001053 | 14001216 | 14001053 | ID=cds.MS.gene43057.t1;Parent=MS.gene43057.t1 |
chr2.4 | exon | 14001757 | 14001857 | 14001757 | ID=MS.gene43057.t1.exon2;Parent=MS.gene43057.t1 |
chr2.4 | CDS | 14001757 | 14001857 | 14001757 | ID=cds.MS.gene43057.t1;Parent=MS.gene43057.t1 |
chr2.4 | exon | 14001971 | 14002163 | 14001971 | ID=MS.gene43057.t1.exon3;Parent=MS.gene43057.t1 |
chr2.4 | CDS | 14001971 | 14002163 | 14001971 | ID=cds.MS.gene43057.t1;Parent=MS.gene43057.t1 |
chr2.4 | exon | 14003863 | 14004024 | 14003863 | ID=MS.gene43057.t1.exon4;Parent=MS.gene43057.t1 |
chr2.4 | CDS | 14003863 | 14004024 | 14003863 | ID=cds.MS.gene43057.t1;Parent=MS.gene43057.t1 |
chr2.4 | exon | 14007170 | 14007251 | 14007170 | ID=MS.gene43057.t1.exon5;Parent=MS.gene43057.t1 |
chr2.4 | CDS | 14007170 | 14007251 | 14007170 | ID=cds.MS.gene43057.t1;Parent=MS.gene43057.t1 |
chr2.4 | exon | 14008147 | 14008413 | 14008147 | ID=MS.gene43057.t1.exon6;Parent=MS.gene43057.t1 |
chr2.4 | CDS | 14008147 | 14008413 | 14008147 | ID=cds.MS.gene43057.t1;Parent=MS.gene43057.t1 |
chr2.4 | exon | 14008948 | 14009079 | 14008948 | ID=MS.gene43057.t1.exon7;Parent=MS.gene43057.t1 |
chr2.4 | CDS | 14008948 | 14009079 | 14008948 | ID=cds.MS.gene43057.t1;Parent=MS.gene43057.t1 |
Gene Sequence |
Protein sequence |