Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43524.t1 | XP_003611545.1 | 92.3 | 415 | 29 | 2 | 1 | 414 | 1 | 413 | 6.20E-210 | 740 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43524.t1 | Q9SY57 | 46.0 | 411 | 199 | 5 | 3 | 405 | 4 | 399 | 4.1e-93 | 343.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43524.t1 | G7K2F2 | 92.3 | 415 | 29 | 2 | 1 | 414 | 1 | 413 | 4.5e-210 | 740.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene43524 | 0.828399 | 9.19E-55 | -1.69E-46 |
| MS.gene049153 | MS.gene43524 | 0.822607 | 2.16E-53 | -1.69E-46 |
| MS.gene049356 | MS.gene43524 | 0.863028 | 3.33E-64 | -1.69E-46 |
| MS.gene050122 | MS.gene43524 | 0.803182 | 3.94E-49 | -1.69E-46 |
| MS.gene050128 | MS.gene43524 | 0.813409 | 2.60E-51 | -1.69E-46 |
| MS.gene050301 | MS.gene43524 | 0.824126 | 9.56E-54 | -1.69E-46 |
| MS.gene050670 | MS.gene43524 | 0.861055 | 1.34E-63 | -1.69E-46 |
| MS.gene050971 | MS.gene43524 | 0.808774 | 2.63E-50 | -1.69E-46 |
| MS.gene05105 | MS.gene43524 | 0.825466 | 4.62E-54 | -1.69E-46 |
| MS.gene051360 | MS.gene43524 | 0.801331 | 9.47E-49 | -1.69E-46 |
| MS.gene051525 | MS.gene43524 | 0.804787 | 1.83E-49 | -1.69E-46 |
| MS.gene051860 | MS.gene43524 | 0.822994 | 1.76E-53 | -1.69E-46 |
| MS.gene052011 | MS.gene43524 | -0.81162 | 6.39E-51 | -1.69E-46 |
| MS.gene052077 | MS.gene43524 | 0.822761 | 1.99E-53 | -1.69E-46 |
| MS.gene052188 | MS.gene43524 | 0.88203 | 1.47E-70 | -1.69E-46 |
| MS.gene052253 | MS.gene43524 | 0.847726 | 9.63E-60 | -1.69E-46 |
| MS.gene052310 | MS.gene43524 | 0.800743 | 1.25E-48 | -1.69E-46 |
| MS.gene052340 | MS.gene43524 | 0.844619 | 6.76E-59 | -1.69E-46 |
| MS.gene052414 | MS.gene43524 | 0.825386 | 4.82E-54 | -1.69E-46 |
| MS.gene052485 | MS.gene43524 | 0.818828 | 1.60E-52 | -1.69E-46 |
| MS.gene05316 | MS.gene43524 | 0.838832 | 2.28E-57 | -1.69E-46 |
| MS.gene053836 | MS.gene43524 | 0.816179 | 6.32E-52 | -1.69E-46 |
| MS.gene053912 | MS.gene43524 | 0.808785 | 2.61E-50 | -1.69E-46 |
| MS.gene054123 | MS.gene43524 | 0.827323 | 1.67E-54 | -1.69E-46 |
| MS.gene054183 | MS.gene43524 | 0.851497 | 8.54E-61 | -1.69E-46 |
| MS.gene054349 | MS.gene43524 | 0.839668 | 1.38E-57 | -1.69E-46 |
| MS.gene054556 | MS.gene43524 | 0.808937 | 2.42E-50 | -1.69E-46 |
| MS.gene054918 | MS.gene43524 | 0.806176 | 9.34E-50 | -1.69E-46 |
| MS.gene054930 | MS.gene43524 | 0.824165 | 9.36E-54 | -1.69E-46 |
| MS.gene055116 | MS.gene43524 | 0.851482 | 8.62E-61 | -1.69E-46 |
| MS.gene055369 | MS.gene43524 | 0.810465 | 1.14E-50 | -1.69E-46 |
| MS.gene05553 | MS.gene43524 | 0.823138 | 1.63E-53 | -1.69E-46 |
| MS.gene055604 | MS.gene43524 | 0.811172 | 8.00E-51 | -1.69E-46 |
| MS.gene055911 | MS.gene43524 | 0.802839 | 4.64E-49 | -1.69E-46 |
| MS.gene056407 | MS.gene43524 | 0.821791 | 3.35E-53 | -1.69E-46 |
| MS.gene056511 | MS.gene43524 | 0.838811 | 2.30E-57 | -1.69E-46 |
| MS.gene056659 | MS.gene43524 | 0.830811 | 2.38E-55 | -1.69E-46 |
| MS.gene056723 | MS.gene43524 | 0.828639 | 8.04E-55 | -1.69E-46 |
| MS.gene056899 | MS.gene43524 | -0.816771 | 4.66E-52 | -1.69E-46 |
| MS.gene05702 | MS.gene43524 | 0.804766 | 1.85E-49 | -1.69E-46 |
| MS.gene057124 | MS.gene43524 | 0.817569 | 3.08E-52 | -1.69E-46 |
| MS.gene057396 | MS.gene43524 | 0.822941 | 1.81E-53 | -1.69E-46 |
| MS.gene057448 | MS.gene43524 | 0.837493 | 5.03E-57 | -1.69E-46 |
| MS.gene057449 | MS.gene43524 | 0.81876 | 1.66E-52 | -1.69E-46 |
| MS.gene057450 | MS.gene43524 | 0.827895 | 1.21E-54 | -1.69E-46 |
| MS.gene057469 | MS.gene43524 | 0.81172 | 6.08E-51 | -1.69E-46 |
| MS.gene057537 | MS.gene43524 | 0.802231 | 6.19E-49 | -1.69E-46 |
| MS.gene057749 | MS.gene43524 | 0.854055 | 1.59E-61 | -1.69E-46 |
| MS.gene057823 | MS.gene43524 | 0.856757 | 2.59E-62 | -1.69E-46 |
| MS.gene057825 | MS.gene43524 | 0.824372 | 8.36E-54 | -1.69E-46 |
| MS.gene058002 | MS.gene43524 | 0.811669 | 6.24E-51 | -1.69E-46 |
| MS.gene058007 | MS.gene43524 | 0.822287 | 2.57E-53 | -1.69E-46 |
| MS.gene058142 | MS.gene43524 | 0.807329 | 5.33E-50 | -1.69E-46 |
| MS.gene058700 | MS.gene43524 | 0.817913 | 2.58E-52 | -1.69E-46 |
| MS.gene058710 | MS.gene43524 | 0.817115 | 3.90E-52 | -1.69E-46 |
| MS.gene05886 | MS.gene43524 | 0.82757 | 1.45E-54 | -1.69E-46 |
| MS.gene058928 | MS.gene43524 | 0.843565 | 1.30E-58 | -1.69E-46 |
| MS.gene058948 | MS.gene43524 | 0.804697 | 1.91E-49 | -1.69E-46 |
| MS.gene058949 | MS.gene43524 | 0.857187 | 1.94E-62 | -1.69E-46 |
| MS.gene05907 | MS.gene43524 | 0.826131 | 3.21E-54 | -1.69E-46 |
| MS.gene059285 | MS.gene43524 | 0.853327 | 2.57E-61 | -1.69E-46 |
| MS.gene059366 | MS.gene43524 | 0.849112 | 3.99E-60 | -1.69E-46 |
| MS.gene059420 | MS.gene43524 | 0.865886 | 4.27E-65 | -1.69E-46 |
| MS.gene059462 | MS.gene43524 | 0.820082 | 8.27E-53 | -1.69E-46 |
| MS.gene059597 | MS.gene43524 | 0.832612 | 8.56E-56 | -1.69E-46 |
| MS.gene059674 | MS.gene43524 | 0.803898 | 2.80E-49 | -1.69E-46 |
| MS.gene059676 | MS.gene43524 | 0.812943 | 3.29E-51 | -1.69E-46 |
| MS.gene059688 | MS.gene43524 | 0.836182 | 1.09E-56 | -1.69E-46 |
| MS.gene059692 | MS.gene43524 | 0.82767 | 1.38E-54 | -1.69E-46 |
| MS.gene059695 | MS.gene43524 | 0.828571 | 8.35E-55 | -1.69E-46 |
| MS.gene059807 | MS.gene43524 | 0.849799 | 2.56E-60 | -1.69E-46 |
| MS.gene05984 | MS.gene43524 | 0.828553 | 8.43E-55 | -1.69E-46 |
| MS.gene059876 | MS.gene43524 | 0.827366 | 1.63E-54 | -1.69E-46 |
| MS.gene060247 | MS.gene43524 | 0.816673 | 4.90E-52 | -1.69E-46 |
| MS.gene060495 | MS.gene43524 | 0.837683 | 4.50E-57 | -1.69E-46 |
| MS.gene061049 | MS.gene43524 | 0.846042 | 2.78E-59 | -1.69E-46 |
| MS.gene061051 | MS.gene43524 | -0.810983 | 8.79E-51 | -1.69E-46 |
| MS.gene061154 | MS.gene43524 | 0.812144 | 4.92E-51 | -1.69E-46 |
| MS.gene061159 | MS.gene43524 | 0.819594 | 1.07E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43524.t1 | MTR_5g015150 | 92.289 | 415 | 29 | 2 | 1 | 414 | 1 | 413 | 0.0 | 754 |
| MS.gene43524.t1 | MTR_3g103320 | 44.262 | 427 | 195 | 8 | 1 | 414 | 1 | 397 | 1.07e-118 | 351 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43524.t1 | AT1G10150 | 46.377 | 414 | 193 | 6 | 3 | 405 | 4 | 399 | 6.62e-123 | 362 |
| MS.gene43524.t1 | AT1G59510 | 43.467 | 398 | 175 | 9 | 14 | 406 | 15 | 367 | 1.05e-108 | 325 |
| MS.gene43524.t1 | AT3G49790 | 41.832 | 404 | 184 | 5 | 10 | 413 | 12 | 364 | 3.42e-98 | 298 |
Find 75 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTGTTCTGATTTGGATTC+TGG | 0.226641 | 5.3:-8232116 | MS.gene43524:CDS |
| TAACCCTAGTCTCATGTTTC+GGG | 0.244852 | 5.3:+8231940 | None:intergenic |
| GCAATTTGATTCAAACTATT+AGG | 0.252909 | 5.3:+8232419 | None:intergenic |
| CTAACCCTAGTCTCATGTTT+CGG | 0.262134 | 5.3:+8231939 | None:intergenic |
| GATAGTTCAGGTTCAGGTTC+AGG | 0.314416 | 5.3:-8231831 | MS.gene43524:CDS |
| TGAGACAGTTAGATCTTTCA+TGG | 0.315546 | 5.3:-8231634 | MS.gene43524:CDS |
| ATTGTTTACACCGGCTGGTT+CGG | 0.330132 | 5.3:-8232249 | MS.gene43524:CDS |
| TTGTTTACACCGGCTGGTTC+GGG | 0.342746 | 5.3:-8232248 | MS.gene43524:CDS |
| CCCGATTGAAACTAAGATTA+AGG | 0.352373 | 5.3:+8232625 | None:intergenic |
| AGAATCGGGTTGTTCTGATT+TGG | 0.353612 | 5.3:-8232123 | MS.gene43524:CDS |
| TTTGCTAGGAATATTGTTCT+TGG | 0.353935 | 5.3:-8232200 | MS.gene43524:CDS |
| ACCTTAATCTTAGTTTCAAT+CGG | 0.367438 | 5.3:-8232626 | MS.gene43524:CDS |
| TGGATTCTGGTGTGCCGAAA+TGG | 0.379309 | 5.3:-8232103 | MS.gene43524:CDS |
| CAAACAACATCAACCCATTT+CGG | 0.385507 | 5.3:+8232089 | None:intergenic |
| TTGCTAGGAATATTGTTCTT+GGG | 0.385636 | 5.3:-8232199 | MS.gene43524:CDS |
| CATTGGCTATTCCTAGTAAT+AGG | 0.391171 | 5.3:-8231692 | MS.gene43524:CDS |
| CCGAATGATAGTTCAGGTTC+AGG | 0.392010 | 5.3:-8231837 | MS.gene43524:CDS |
| TGCACATAATGGATTGCAAT+TGG | 0.408920 | 5.3:-8231479 | MS.gene43524:CDS |
| GGATTTGCTTCTGTTGTTGT+TGG | 0.421636 | 5.3:-8232227 | MS.gene43524:CDS |
| AATGGATTGCAATTGGGCTT+TGG | 0.425168 | 5.3:-8231472 | MS.gene43524:CDS |
| AAGAGATGTTTGTGATAAAG+AGG | 0.428216 | 5.3:-8231748 | MS.gene43524:CDS |
| TTTCTCTTTCGAGCTATGAA+TGG | 0.431945 | 5.3:+8232566 | None:intergenic |
| CTTGTCAGCAACATTTGAAT+CGG | 0.434555 | 5.3:+8232283 | None:intergenic |
| ATAAGTGTGGGGAGCTGATT+GGG | 0.438595 | 5.3:-8232061 | MS.gene43524:CDS |
| GTTTGTGATAAAGAGGATAA+AGG | 0.441922 | 5.3:-8231741 | MS.gene43524:CDS |
| TCGAACCCGAATGATAGTTC+AGG | 0.449003 | 5.3:-8231843 | MS.gene43524:CDS |
| CCTGAACCTGAACTATCATT+CGG | 0.449100 | 5.3:+8231837 | None:intergenic |
| GGATTCGAGAAGTGGAGAAT+CGG | 0.454786 | 5.3:-8232138 | MS.gene43524:CDS |
| ATGTCCGTAAAAGAAAGAAA+TGG | 0.457589 | 5.3:-8232649 | MS.gene43524:CDS |
| GCACATAATGGATTGCAATT+GGG | 0.461406 | 5.3:-8231478 | MS.gene43524:CDS |
| CGCGTTGTGCCTGCACATAA+TGG | 0.463386 | 5.3:-8231490 | MS.gene43524:CDS |
| CCTTAATCTTAGTTTCAATC+GGG | 0.466170 | 5.3:-8232625 | MS.gene43524:CDS |
| CTGAACCTGAACTATCATTC+GGG | 0.470073 | 5.3:+8231838 | None:intergenic |
| AGACTTGTTCTTGATGTGAC+TGG | 0.473332 | 5.3:-8231669 | MS.gene43524:CDS |
| GACTAGGGTTAGAGAAATGT+TGG | 0.481635 | 5.3:-8231928 | MS.gene43524:CDS |
| GATAAATTGTTTACACCGGC+TGG | 0.484801 | 5.3:-8232254 | MS.gene43524:CDS |
| GGATTCTGGTGTGCCGAAAT+GGG | 0.490037 | 5.3:-8232102 | MS.gene43524:CDS |
| GATAAGTGTGGGGAGCTGAT+TGG | 0.493181 | 5.3:-8232062 | MS.gene43524:CDS |
| AGAACAAGTCTCCTATTACT+AGG | 0.493344 | 5.3:+8231681 | None:intergenic |
| CGATTCAAATGTTGCTGACA+AGG | 0.496180 | 5.3:-8232282 | MS.gene43524:CDS |
| TAAAGAGGATAAAGGTGGTT+GGG | 0.499685 | 5.3:-8231733 | MS.gene43524:CDS |
| GATTCGAGAAGTGGAGAATC+GGG | 0.500290 | 5.3:-8232137 | MS.gene43524:CDS |
| CTAACCCGAAACATGAGACT+AGG | 0.506984 | 5.3:-8231944 | MS.gene43524:CDS |
| CTAGTAACCACCACTTAAGC+AGG | 0.514335 | 5.3:+8231447 | None:intergenic |
| GTGACTGTTGGAATTGTGAA+TGG | 0.524223 | 5.3:-8232341 | MS.gene43524:CDS |
| TCAGAATCTGCAGATACCAT+TGG | 0.527605 | 5.3:-8232494 | MS.gene43524:CDS |
| ATGTTGGTTGATGTTTGTAA+TGG | 0.527695 | 5.3:-8231912 | MS.gene43524:CDS |
| TCAATTGTTTGTTAGTACAT+TGG | 0.532506 | 5.3:-8232030 | MS.gene43524:CDS |
| TTGTTTGTAGTGATAAGTGT+GGG | 0.535485 | 5.3:-8232073 | MS.gene43524:CDS |
| TGGTTATCAATCCATGAGCC+AGG | 0.539703 | 5.3:-8232321 | MS.gene43524:CDS |
| GACTTGTTCTTGATGTGACT+GGG | 0.540843 | 5.3:-8231668 | MS.gene43524:CDS |
| GGAGGGTTGGATTCGAGAAG+TGG | 0.544923 | 5.3:-8232146 | MS.gene43524:CDS |
| TCACAATGTTCACGAGGAAG+TGG | 0.550752 | 5.3:-8231568 | MS.gene43524:CDS |
| AATTGCAATCCATTATGTGC+AGG | 0.556385 | 5.3:+8231481 | None:intergenic |
| ATAAAGAGGATAAAGGTGGT+TGG | 0.557867 | 5.3:-8231734 | MS.gene43524:CDS |
| TGGTAAATGCAGTGGAGGGT+TGG | 0.560656 | 5.3:-8232159 | MS.gene43524:CDS |
| GTTTGATAAATTGTTTACAC+CGG | 0.572672 | 5.3:-8232258 | MS.gene43524:CDS |
| CAGCAAGGTTTCATCCACAT+TGG | 0.581109 | 5.3:-8231709 | MS.gene43524:CDS |
| GTTGTTTGTAGTGATAAGTG+TGG | 0.581476 | 5.3:-8232074 | MS.gene43524:CDS |
| GTGACACGTGCTGTGACTGT+TGG | 0.593196 | 5.3:-8232353 | MS.gene43524:CDS |
| GAAGCAAATCCCGAACCAGC+CGG | 0.594026 | 5.3:+8232239 | None:intergenic |
| TAAAGGTGGTTGGGTCAGCA+AGG | 0.596356 | 5.3:-8231724 | MS.gene43524:CDS |
| AATTGCGAAATTATCGCGCT+CGG | 0.597238 | 5.3:-8232402 | MS.gene43524:CDS |
| TAACCCGAAACATGAGACTA+GGG | 0.605610 | 5.3:-8231943 | MS.gene43524:CDS |
| TTGTTCTTGATGTGACTGGG+AGG | 0.633345 | 5.3:-8231665 | MS.gene43524:CDS |
| TGTTCTTGATGTGACTGGGA+GGG | 0.644691 | 5.3:-8231664 | MS.gene43524:CDS |
| TCTTGTTAAAACGTCTCATG+AGG | 0.649097 | 5.3:-8231877 | MS.gene43524:CDS |
| GCTGGTGGTAAATGCAGTGG+AGG | 0.658148 | 5.3:-8232164 | MS.gene43524:CDS |
| ATTACTAGGAATAGCCAATG+TGG | 0.658823 | 5.3:+8231695 | None:intergenic |
| GATGCTGGTGGTAAATGCAG+TGG | 0.670323 | 5.3:-8232167 | MS.gene43524:CDS |
| TGTGATAAAGAGGATAAAGG+TGG | 0.671559 | 5.3:-8231738 | MS.gene43524:CDS |
| ATGTGCTCACAATGTTCACG+AGG | 0.700633 | 5.3:-8231574 | MS.gene43524:CDS |
| CTGGTGGTAAATGCAGTGGA+GGG | 0.702499 | 5.3:-8232163 | MS.gene43524:CDS |
| TGAATGGTGCGTGATAAGCA+CGG | 0.702699 | 5.3:+8232582 | None:intergenic |
| TGTTTGTAGTGATAAGTGTG+GGG | 0.727200 | 5.3:-8232072 | MS.gene43524:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ACCTTAATCTTAGTTTCAAT+CGG | - | chr5.3:8231518-8231537 | MS.gene43524:CDS | 25.0% |
| ! | GCAATTTGATTCAAACTATT+AGG | + | chr5.3:8231728-8231747 | None:intergenic | 25.0% |
| ! | GTTTGATAAATTGTTTACAC+CGG | - | chr5.3:8231886-8231905 | MS.gene43524:CDS | 25.0% |
| !! | ACTTATGATGAATTCTTTTC+TGG | - | chr5.3:8232172-8232191 | MS.gene43524:CDS | 25.0% |
| !! | TCAATTGTTTGTTAGTACAT+TGG | - | chr5.3:8232114-8232133 | MS.gene43524:CDS | 25.0% |
| AAGAGATGTTTGTGATAAAG+AGG | - | chr5.3:8232396-8232415 | MS.gene43524:CDS | 30.0% | |
| ATGTCCGTAAAAGAAAGAAA+TGG | - | chr5.3:8231495-8231514 | MS.gene43524:CDS | 30.0% | |
| CCTTAATCTTAGTTTCAATC+GGG | - | chr5.3:8231519-8231538 | MS.gene43524:CDS | 30.0% | |
| GTTTGTGATAAAGAGGATAA+AGG | - | chr5.3:8232403-8232422 | MS.gene43524:CDS | 30.0% | |
| TTGCTAGGAATATTGTTCTT+GGG | - | chr5.3:8231945-8231964 | MS.gene43524:CDS | 30.0% | |
| TTGTTTGTAGTGATAAGTGT+GGG | - | chr5.3:8232071-8232090 | MS.gene43524:CDS | 30.0% | |
| TTTGCTAGGAATATTGTTCT+TGG | - | chr5.3:8231944-8231963 | MS.gene43524:CDS | 30.0% | |
| ! | AGGTCCATTTCTTTCTTTTA+CGG | + | chr5.3:8231502-8231521 | None:intergenic | 30.0% |
| ! | ATCTTTTGTGACAATACCAA+TGG | + | chr5.3:8231669-8231688 | None:intergenic | 30.0% |
| ! | ATGTTGGTTGATGTTTGTAA+TGG | - | chr5.3:8232232-8232251 | MS.gene43524:CDS | 30.0% |
| !!! | TTTATTTTGCAAACGTTGTG+TGG | - | chr5.3:8232535-8232554 | MS.gene43524:CDS | 30.0% |
| AATTGCAATCCATTATGTGC+AGG | + | chr5.3:8232666-8232685 | None:intergenic | 35.0% | |
| AGAACAAGTCTCCTATTACT+AGG | + | chr5.3:8232466-8232485 | None:intergenic | 35.0% | |
| ATAAAGAGGATAAAGGTGGT+TGG | - | chr5.3:8232410-8232429 | MS.gene43524:CDS | 35.0% | |
| ATTACTAGGAATAGCCAATG+TGG | + | chr5.3:8232452-8232471 | None:intergenic | 35.0% | |
| CAAACAACATCAACCCATTT+CGG | + | chr5.3:8232058-8232077 | None:intergenic | 35.0% | |
| CCCGATTGAAACTAAGATTA+AGG | + | chr5.3:8231522-8231541 | None:intergenic | 35.0% | |
| CTTGTCAGCAACATTTGAAT+CGG | + | chr5.3:8231864-8231883 | None:intergenic | 35.0% | |
| GTTGTTTGTAGTGATAAGTG+TGG | - | chr5.3:8232070-8232089 | MS.gene43524:CDS | 35.0% | |
| TAAAGAGGATAAAGGTGGTT+GGG | - | chr5.3:8232411-8232430 | MS.gene43524:CDS | 35.0% | |
| TCTTGTTAAAACGTCTCATG+AGG | - | chr5.3:8232267-8232286 | MS.gene43524:CDS | 35.0% | |
| TGAGACAGTTAGATCTTTCA+TGG | - | chr5.3:8232510-8232529 | MS.gene43524:CDS | 35.0% | |
| TGTGATAAAGAGGATAAAGG+TGG | - | chr5.3:8232406-8232425 | MS.gene43524:CDS | 35.0% | |
| TGTTTGTAGTGATAAGTGTG+GGG | - | chr5.3:8232072-8232091 | MS.gene43524:CDS | 35.0% | |
| TTTCTCTTTCGAGCTATGAA+TGG | + | chr5.3:8231581-8231600 | None:intergenic | 35.0% | |
| ! | CATTGGCTATTCCTAGTAAT+AGG | - | chr5.3:8232452-8232471 | MS.gene43524:CDS | 35.0% |
| !! | GCACATAATGGATTGCAATT+GGG | - | chr5.3:8232666-8232685 | MS.gene43524:CDS | 35.0% |
| !! | TGCACATAATGGATTGCAAT+TGG | - | chr5.3:8232665-8232684 | MS.gene43524:CDS | 35.0% |
| !! | TTGTTGTTGGAAGTTTTGCT+AGG | - | chr5.3:8231930-8231949 | MS.gene43524:CDS | 35.0% |
| !!! | TCAGGTTCTTATTTTGATGC+TGG | - | chr5.3:8232331-8232350 | MS.gene43524:CDS | 35.0% |
| AATTGCGAAATTATCGCGCT+CGG | - | chr5.3:8231742-8231761 | MS.gene43524:CDS | 40.0% | |
| CCTGAACCTGAACTATCATT+CGG | + | chr5.3:8232310-8232329 | None:intergenic | 40.0% | |
| CGATTCAAATGTTGCTGACA+AGG | - | chr5.3:8231862-8231881 | MS.gene43524:CDS | 40.0% | |
| CTAACCCTAGTCTCATGTTT+CGG | + | chr5.3:8232208-8232227 | None:intergenic | 40.0% | |
| CTGAACCTGAACTATCATTC+GGG | + | chr5.3:8232309-8232328 | None:intergenic | 40.0% | |
| GACTAGGGTTAGAGAAATGT+TGG | - | chr5.3:8232216-8232235 | MS.gene43524:CDS | 40.0% | |
| GATAAATTGTTTACACCGGC+TGG | - | chr5.3:8231890-8231909 | MS.gene43524:CDS | 40.0% | |
| GTGACTGTTGGAATTGTGAA+TGG | - | chr5.3:8231803-8231822 | MS.gene43524:CDS | 40.0% | |
| TAACCCGAAACATGAGACTA+GGG | - | chr5.3:8232201-8232220 | MS.gene43524:CDS | 40.0% | |
| TAACCCTAGTCTCATGTTTC+GGG | + | chr5.3:8232207-8232226 | None:intergenic | 40.0% | |
| TCAGAATCTGCAGATACCAT+TGG | - | chr5.3:8231650-8231669 | MS.gene43524:CDS | 40.0% | |
| ! | AGAATCGGGTTGTTCTGATT+TGG | - | chr5.3:8232021-8232040 | MS.gene43524:CDS | 40.0% |
| ! | AGACTTGTTCTTGATGTGAC+TGG | - | chr5.3:8232475-8232494 | MS.gene43524:CDS | 40.0% |
| ! | GACTTGTTCTTGATGTGACT+GGG | - | chr5.3:8232476-8232495 | MS.gene43524:CDS | 40.0% |
| ! | GGAACAGTTTTCGGATTCTT+TGG | - | chr5.3:8231763-8231782 | MS.gene43524:CDS | 40.0% |
| ! | GGATTTGCTTCTGTTGTTGT+TGG | - | chr5.3:8231917-8231936 | MS.gene43524:CDS | 40.0% |
| !! | AATGGATTGCAATTGGGCTT+TGG | - | chr5.3:8232672-8232691 | MS.gene43524:CDS | 40.0% |
| !! | GGTTGTTCTGATTTGGATTC+TGG | - | chr5.3:8232028-8232047 | MS.gene43524:CDS | 40.0% |
| !!! | CTTGGGTTTTATTCAGATGC+TGG | - | chr5.3:8231962-8231981 | MS.gene43524:CDS | 40.0% |
| ATAAGTGTGGGGAGCTGATT+GGG | - | chr5.3:8232083-8232102 | MS.gene43524:CDS | 45.0% | |
| ATGTGCTCACAATGTTCACG+AGG | - | chr5.3:8232570-8232589 | MS.gene43524:CDS | 45.0% | |
| CAGCAAGGTTTCATCCACAT+TGG | - | chr5.3:8232435-8232454 | MS.gene43524:CDS | 45.0% | |
| CTAACCCGAAACATGAGACT+AGG | - | chr5.3:8232200-8232219 | MS.gene43524:CDS | 45.0% | |
| GATTCGAGAAGTGGAGAATC+GGG | - | chr5.3:8232007-8232026 | MS.gene43524:CDS | 45.0% | |
| GGATTCGAGAAGTGGAGAAT+CGG | - | chr5.3:8232006-8232025 | MS.gene43524:CDS | 45.0% | |
| TCACAATGTTCACGAGGAAG+TGG | - | chr5.3:8232576-8232595 | MS.gene43524:CDS | 45.0% | |
| TCGAACCCGAATGATAGTTC+AGG | - | chr5.3:8232301-8232320 | MS.gene43524:CDS | 45.0% | |
| TGAATGGTGCGTGATAAGCA+CGG | + | chr5.3:8231565-8231584 | None:intergenic | 45.0% | |
| TGGTTATCAATCCATGAGCC+AGG | - | chr5.3:8231823-8231842 | MS.gene43524:CDS | 45.0% | |
| TGTTCTTGATGTGACTGGGA+GGG | - | chr5.3:8232480-8232499 | MS.gene43524:CDS | 45.0% | |
| TTGTTCTTGATGTGACTGGG+AGG | - | chr5.3:8232479-8232498 | MS.gene43524:CDS | 45.0% | |
| ! | ATTGTTTACACCGGCTGGTT+CGG | - | chr5.3:8231895-8231914 | MS.gene43524:CDS | 45.0% |
| ! | ATTTTCATCAGCCTGGCTCA+TGG | + | chr5.3:8231837-8231856 | None:intergenic | 45.0% |
| ! | CCGAATGATAGTTCAGGTTC+AGG | - | chr5.3:8232307-8232326 | MS.gene43524:CDS | 45.0% |
| ! | GATAGTTCAGGTTCAGGTTC+AGG | - | chr5.3:8232313-8232332 | MS.gene43524:CDS | 45.0% |
| !! | CGGATTGATTTTCATCAGCC+TGG | + | chr5.3:8231844-8231863 | None:intergenic | 45.0% |
| !!! | GGGTTTTATTCAGATGCTGG+TGG | - | chr5.3:8231965-8231984 | MS.gene43524:CDS | 45.0% |
| CTGGTGGTAAATGCAGTGGA+GGG | - | chr5.3:8231981-8232000 | MS.gene43524:CDS | 50.0% | |
| GATAAGTGTGGGGAGCTGAT+TGG | - | chr5.3:8232082-8232101 | MS.gene43524:CDS | 50.0% | |
| GATGCTGGTGGTAAATGCAG+TGG | - | chr5.3:8231977-8231996 | MS.gene43524:CDS | 50.0% | |
| GGATTCTGGTGTGCCGAAAT+GGG | - | chr5.3:8232042-8232061 | MS.gene43524:CDS | 50.0% | |
| TAAAGGTGGTTGGGTCAGCA+AGG | - | chr5.3:8232420-8232439 | MS.gene43524:CDS | 50.0% | |
| TGGATTCTGGTGTGCCGAAA+TGG | - | chr5.3:8232041-8232060 | MS.gene43524:CDS | 50.0% | |
| TGGTAAATGCAGTGGAGGGT+TGG | - | chr5.3:8231985-8232004 | MS.gene43524:CDS | 50.0% | |
| ! | ATCGCGCTCGGAACAGTTTT+CGG | - | chr5.3:8231754-8231773 | MS.gene43524:CDS | 50.0% |
| ! | TTGTTTACACCGGCTGGTTC+GGG | - | chr5.3:8231896-8231915 | MS.gene43524:CDS | 50.0% |
| CGCGTTGTGCCTGCACATAA+TGG | - | chr5.3:8232654-8232673 | MS.gene43524:CDS | 55.0% | |
| GAAGCAAATCCCGAACCAGC+CGG | + | chr5.3:8231908-8231927 | None:intergenic | 55.0% | |
| GCTGGTGGTAAATGCAGTGG+AGG | - | chr5.3:8231980-8231999 | MS.gene43524:CDS | 55.0% | |
| GGAGGGTTGGATTCGAGAAG+TGG | - | chr5.3:8231998-8232017 | MS.gene43524:CDS | 55.0% | |
| GTGACACGTGCTGTGACTGT+TGG | - | chr5.3:8231791-8231810 | MS.gene43524:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 8231461 | 8232705 | 8231461 | ID=MS.gene43524 |
| chr5.3 | mRNA | 8231461 | 8232705 | 8231461 | ID=MS.gene43524.t1;Parent=MS.gene43524 |
| chr5.3 | exon | 8231461 | 8232705 | 8231461 | ID=MS.gene43524.t1.exon1;Parent=MS.gene43524.t1 |
| chr5.3 | CDS | 8231461 | 8232705 | 8231461 | ID=cds.MS.gene43524.t1;Parent=MS.gene43524.t1 |
| Gene Sequence |
| Protein sequence |
