AlfalfaGEDB | MS.gene45479

M. sativa cultivar XinJiangDaYe / MS.gene45479

KEGG: K11251
GO: GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005634 GO:0032991 GO:0032993 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044815 GO:0046982 GO:0046983 GO:0097159 GO:0110165 GO:1901363
PFAM: PF00125.27 PF16211.8

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45479.t1	RHN76061.1	97.1	138	4	0	1	138	38	175	3.00E-66	261.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45479.t1	Q2HU68	97.1	138	4	0	1	138	1	138	7.2e-69	261.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45479.t1	G7IHN4	97.1	138	4	0	1	138	1	138	2.2e-66	261.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049328	MS.gene45479	0.819757	9.82E-53	-1.69E-46
MS.gene049341	MS.gene45479	0.808501	3.00E-50	-1.69E-46
MS.gene049807	MS.gene45479	0.821738	3.44E-53	-1.69E-46
MS.gene049821	MS.gene45479	0.864892	8.77E-65	-1.69E-46
MS.gene049887	MS.gene45479	0.801371	9.29E-49	-1.69E-46
MS.gene050020	MS.gene45479	0.812848	3.45E-51	-1.69E-46
MS.gene050689	MS.gene45479	0.802226	6.20E-49	-1.69E-46
MS.gene050838	MS.gene45479	0.819632	1.05E-52	-1.69E-46
MS.gene050901	MS.gene45479	0.839619	1.42E-57	-1.69E-46
MS.gene051263	MS.gene45479	0.817043	4.05E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45479.t1	MTR_2g096610	97.297	148	4	0	1	148	1	148	1.57e-100	285
MS.gene45479.t1	MTR_4g063280	90.909	132	11	1	18	148	14	145	1.36e-79	232
MS.gene45479.t1	MTR_4g071150	86.842	152	16	2	1	148	1	152	1.14e-78	229
MS.gene45479.t1	MTR_4g064005	87.333	150	15	2	1	148	1	148	4.55e-78	228
MS.gene45479.t1	MTR_2g096570	87.023	131	13	1	22	148	23	153	1.28e-76	224
MS.gene45479.t1	MTR_4g064967	91.339	127	9	1	22	148	24	148	1.50e-76	224
MS.gene45479.t1	MTR_4g063410	84.000	150	20	2	1	148	1	148	6.11e-75	220
MS.gene45479.t1	MTR_7g113160	81.061	132	25	0	9	140	13	144	2.27e-74	218
MS.gene45479.t1	MTR_8g086640	89.394	132	12	1	1	130	1	132	7.83e-72	212
MS.gene45479.t1	MTR_7g093910	73.810	126	31	1	2	127	4	127	1.05e-60	184

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45479.t1	AT5G02560	82.353	153	22	2	1	148	1	153	9.32e-80	233
MS.gene45479.t1	AT5G27670	77.551	147	32	1	2	148	5	150	5.26e-76	223
MS.gene45479.t1	AT5G02560	71.186	177	22	3	1	148	1	177	9.44e-75	221
MS.gene45479.t1	AT5G59870	72.667	150	39	1	1	148	1	150	5.48e-73	215
MS.gene45479.t1	AT1G51060	80.180	111	22	0	17	127	11	121	2.29e-60	182
MS.gene45479.t1	AT1G08880	72.800	125	30	1	7	127	3	127	9.11e-59	179
MS.gene45479.t1	AT4G27230	77.477	111	25	0	17	127	11	121	1.28e-58	178
MS.gene45479.t1	AT4G27230	77.477	111	25	0	17	127	11	121	1.28e-58	178
MS.gene45479.t1	AT5G54640	78.378	111	24	0	17	127	11	121	1.65e-58	178
MS.gene45479.t1	AT1G54690	73.770	122	28	1	10	127	6	127	2.29e-58	178

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Find 47 sgRNAs with CRISPR-Local

Find 51 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATTGGGTTGATGTT+TGG	0.366899	2.1:+6997246	None:intergenic
AAAGGAGCTGGTGGAAGGAA+AGG	0.477487	2.1:-6997662	MS.gene45479:CDS
AAATTGAAGACCAGCTCTGG+TGG	0.562253	2.1:+6997610	None:intergenic
AACTAAATCTAAGCCTTCTT+TGG	0.259152	2.1:+6997162	None:intergenic
AAGACGAAGAAAGGAGCTGG+TGG	0.662071	2.1:-6997671	MS.gene45479:CDS
ACCAAGACGAAGAAAGGAGC+TGG	0.579581	2.1:-6997674	MS.gene45479:CDS
ACCAGCTCCTTTCTTCGTCT+TGG	0.348361	2.1:+6997673	None:intergenic
ACTGCCAACAGCAAATGCCT+AGG	0.578012	2.1:+6997333	None:intergenic
AGAACAGCTGCAAGATAAAC+AGG	0.409350	2.1:+6997521	None:intergenic
AGAAGAACAGGATCATCCCT+AGG	0.619121	2.1:-6997350	MS.gene45479:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTACCTAAGAAGAATGAGA+AGG	-	chr2.1:6997630-6997649	MS.gene45479:CDS	30.0%
CAATTTCCAGTTGGAAGAAT+CGG	-	chr2.1:6997263-6997282	MS.gene45479:CDS	35.0%
AGAACAGCTGCAAGATAAAC+AGG	+	chr2.1:6997338-6997357	None:intergenic	40.0%
GAAGCCTTCTCATTCTTCTT+AGG	+	chr2.1:6997637-6997656	None:intergenic	40.0%
GTGAGGAATGATGAAGAACT+TGG	-	chr2.1:6997544-6997563	MS.gene45479:CDS	40.0%
TCTTGAATATCTTGCTGCTG+AGG	-	chr2.1:6997355-6997374	MS.gene45479:CDS	40.0%
AGAAGAACAGGATCATCCCT+AGG	-	chr2.1:6997506-6997525	MS.gene45479:CDS	45.0%
ATCGGTCGGTACTTGAAGAA+AGG	-	chr2.1:6997281-6997300	MS.gene45479:CDS	45.0%
CACGTGACAACAAGAAGAAC+AGG	-	chr2.1:6997494-6997513	MS.gene45479:intron	45.0%
GAACTTGGAAAGTTGCTAGC+TGG	-	chr2.1:6997559-6997578	MS.gene45479:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	6997170	6997708	6997170	ID=MS.gene45479
chr2.1	mRNA	6997170	6997708	6997170	ID=MS.gene45479.t1;Parent=MS.gene45479
chr2.1	exon	6997502	6997708	6997502	ID=MS.gene45479.t1.exon1;Parent=MS.gene45479.t1
chr2.1	CDS	6997502	6997708	6997502	ID=cds.MS.gene45479.t1;Parent=MS.gene45479.t1
chr2.1	exon	6997170	6997409	6997170	ID=MS.gene45479.t1.exon2;Parent=MS.gene45479.t1
chr2.1	CDS	6997170	6997409	6997170	ID=cds.MS.gene45479.t1;Parent=MS.gene45479.t1

Gene Sequence

>MS.gene45479

ATGGACGCAAGCACCAAGACGAAGAAAGGAGCTGGTGGAAGGAAAGGTGGTCCAAGGAAGAAGGCGGTGACAAGATCCACCAGAGCTGGTCTTCAATTTCCAGTTGGAAGAATCGGTCGGTACTTGAAGAAAGGAAGATACGCTCAGCGTGTTGGTACTGGTGCTCCTGTTTATCTTGCAGCTGTTCTTGAATATCTTGCTGCTGAGGTATATCTCAATTTCAATTTTCCCTCTTTTGATTTTCAAATTTGAAATTCAAACCCTAATTTTGATGAAATTGAAATTTGATTTGTGTTCAGGTTCTTGAATTGGCTGGAAATGCTGCACGTGACAACAAGAAGAACAGGATCATCCCTAGGCATTTGCTGTTGGCAGTGAGGAATGATGAAGAACTTGGAAAGTTGCTAGCTGGAGTTACAATTGCACATGGTGGTGTTCTTCCAAACATCAACCCAATTCTTTTACCTAAGAAGAATGAGAAGGCTTCAACTGCTACCAAATCTCCATCCAAGGCTACCAAATCTCCAAAGAAGGCTTAG

Protein sequence

>MS.gene45479.t1

MDASTKTKKGAGGRKGGPRKKAVTRSTRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKKNEKASTATKSPSKATKSPKKA