Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45479.t1 | RHN76061.1 | 97.1 | 138 | 4 | 0 | 1 | 138 | 38 | 175 | 3.00E-66 | 261.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45479.t1 | Q2HU68 | 97.1 | 138 | 4 | 0 | 1 | 138 | 1 | 138 | 7.2e-69 | 261.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45479.t1 | G7IHN4 | 97.1 | 138 | 4 | 0 | 1 | 138 | 1 | 138 | 2.2e-66 | 261.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049328 | MS.gene45479 | 0.819757 | 9.82E-53 | -1.69E-46 |
MS.gene049341 | MS.gene45479 | 0.808501 | 3.00E-50 | -1.69E-46 |
MS.gene049807 | MS.gene45479 | 0.821738 | 3.44E-53 | -1.69E-46 |
MS.gene049821 | MS.gene45479 | 0.864892 | 8.77E-65 | -1.69E-46 |
MS.gene049887 | MS.gene45479 | 0.801371 | 9.29E-49 | -1.69E-46 |
MS.gene050020 | MS.gene45479 | 0.812848 | 3.45E-51 | -1.69E-46 |
MS.gene050689 | MS.gene45479 | 0.802226 | 6.20E-49 | -1.69E-46 |
MS.gene050838 | MS.gene45479 | 0.819632 | 1.05E-52 | -1.69E-46 |
MS.gene050901 | MS.gene45479 | 0.839619 | 1.42E-57 | -1.69E-46 |
MS.gene051263 | MS.gene45479 | 0.817043 | 4.05E-52 | -1.69E-46 |
MS.gene05157 | MS.gene45479 | 0.821405 | 4.11E-53 | -1.69E-46 |
MS.gene051700 | MS.gene45479 | 0.810338 | 1.21E-50 | -1.69E-46 |
MS.gene051719 | MS.gene45479 | 0.827154 | 1.83E-54 | -1.69E-46 |
MS.gene051720 | MS.gene45479 | 0.849807 | 2.55E-60 | -1.69E-46 |
MS.gene051885 | MS.gene45479 | 0.800004 | 1.77E-48 | -1.69E-46 |
MS.gene052133 | MS.gene45479 | 0.909499 | 5.32E-82 | -1.69E-46 |
MS.gene052516 | MS.gene45479 | 0.819982 | 8.72E-53 | -1.69E-46 |
MS.gene052732 | MS.gene45479 | 0.825128 | 5.55E-54 | -1.69E-46 |
MS.gene053122 | MS.gene45479 | 0.819703 | 1.01E-52 | -1.69E-46 |
MS.gene053144 | MS.gene45479 | 0.843779 | 1.14E-58 | -1.69E-46 |
MS.gene053174 | MS.gene45479 | 0.800378 | 1.48E-48 | -1.69E-46 |
MS.gene053226 | MS.gene45479 | 0.804587 | 2.01E-49 | -1.69E-46 |
MS.gene053581 | MS.gene45479 | 0.850712 | 1.42E-60 | -1.69E-46 |
MS.gene053599 | MS.gene45479 | 0.805616 | 1.23E-49 | -1.69E-46 |
MS.gene05364 | MS.gene45479 | 0.812558 | 3.99E-51 | -1.69E-46 |
MS.gene054584 | MS.gene45479 | 0.840904 | 6.57E-58 | -1.69E-46 |
MS.gene055465 | MS.gene45479 | 0.843023 | 1.81E-58 | -1.69E-46 |
MS.gene055466 | MS.gene45479 | 0.835063 | 2.09E-56 | -1.69E-46 |
MS.gene055468 | MS.gene45479 | 0.847211 | 1.33E-59 | -1.69E-46 |
MS.gene055469 | MS.gene45479 | 0.804254 | 2.36E-49 | -1.69E-46 |
MS.gene055537 | MS.gene45479 | 0.822168 | 2.74E-53 | -1.69E-46 |
MS.gene055580 | MS.gene45479 | -0.835964 | 1.24E-56 | -1.69E-46 |
MS.gene055890 | MS.gene45479 | 0.814099 | 1.83E-51 | -1.69E-46 |
MS.gene055891 | MS.gene45479 | 0.81579 | 7.72E-52 | -1.69E-46 |
MS.gene055912 | MS.gene45479 | 0.822015 | 2.97E-53 | -1.69E-46 |
MS.gene056043 | MS.gene45479 | -0.819697 | 1.01E-52 | -1.69E-46 |
MS.gene056075 | MS.gene45479 | 0.802207 | 6.26E-49 | -1.69E-46 |
MS.gene05608 | MS.gene45479 | 0.809344 | 1.98E-50 | -1.69E-46 |
MS.gene056215 | MS.gene45479 | 0.830659 | 2.59E-55 | -1.69E-46 |
MS.gene056308 | MS.gene45479 | 0.806849 | 6.74E-50 | -1.69E-46 |
MS.gene057705 | MS.gene45479 | 0.820849 | 5.52E-53 | -1.69E-46 |
MS.gene058216 | MS.gene45479 | 0.814089 | 1.84E-51 | -1.69E-46 |
MS.gene058852 | MS.gene45479 | 0.813477 | 2.51E-51 | -1.69E-46 |
MS.gene05978 | MS.gene45479 | 0.815204 | 1.04E-51 | -1.69E-46 |
MS.gene06001 | MS.gene45479 | 0.800066 | 1.72E-48 | -1.69E-46 |
MS.gene060194 | MS.gene45479 | 0.821354 | 4.22E-53 | -1.69E-46 |
MS.gene060429 | MS.gene45479 | 0.826639 | 2.43E-54 | -1.69E-46 |
MS.gene060519 | MS.gene45479 | 0.823563 | 1.29E-53 | -1.69E-46 |
MS.gene060587 | MS.gene45479 | 0.850827 | 1.32E-60 | -1.69E-46 |
MS.gene061176 | MS.gene45479 | 0.8197 | 1.01E-52 | -1.69E-46 |
MS.gene061177 | MS.gene45479 | 0.818937 | 1.51E-52 | -1.69E-46 |
MS.gene061178 | MS.gene45479 | 0.819527 | 1.11E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45479.t1 | MTR_2g096610 | 97.297 | 148 | 4 | 0 | 1 | 148 | 1 | 148 | 1.57e-100 | 285 |
MS.gene45479.t1 | MTR_4g063280 | 90.909 | 132 | 11 | 1 | 18 | 148 | 14 | 145 | 1.36e-79 | 232 |
MS.gene45479.t1 | MTR_4g071150 | 86.842 | 152 | 16 | 2 | 1 | 148 | 1 | 152 | 1.14e-78 | 229 |
MS.gene45479.t1 | MTR_4g064005 | 87.333 | 150 | 15 | 2 | 1 | 148 | 1 | 148 | 4.55e-78 | 228 |
MS.gene45479.t1 | MTR_2g096570 | 87.023 | 131 | 13 | 1 | 22 | 148 | 23 | 153 | 1.28e-76 | 224 |
MS.gene45479.t1 | MTR_4g064967 | 91.339 | 127 | 9 | 1 | 22 | 148 | 24 | 148 | 1.50e-76 | 224 |
MS.gene45479.t1 | MTR_4g063410 | 84.000 | 150 | 20 | 2 | 1 | 148 | 1 | 148 | 6.11e-75 | 220 |
MS.gene45479.t1 | MTR_7g113160 | 81.061 | 132 | 25 | 0 | 9 | 140 | 13 | 144 | 2.27e-74 | 218 |
MS.gene45479.t1 | MTR_8g086640 | 89.394 | 132 | 12 | 1 | 1 | 130 | 1 | 132 | 7.83e-72 | 212 |
MS.gene45479.t1 | MTR_7g093910 | 73.810 | 126 | 31 | 1 | 2 | 127 | 4 | 127 | 1.05e-60 | 184 |
MS.gene45479.t1 | MTR_7g108320 | 74.400 | 125 | 29 | 1 | 3 | 127 | 6 | 127 | 3.64e-60 | 182 |
MS.gene45479.t1 | MTR_7g114060 | 73.810 | 126 | 29 | 2 | 3 | 127 | 2 | 124 | 1.22e-59 | 181 |
MS.gene45479.t1 | MTR_7g114040 | 73.810 | 126 | 29 | 2 | 3 | 127 | 2 | 124 | 1.22e-59 | 181 |
MS.gene45479.t1 | MTR_2g082510 | 78.378 | 111 | 24 | 0 | 17 | 127 | 11 | 121 | 5.13e-59 | 179 |
MS.gene45479.t1 | MTR_2g082220 | 79.630 | 108 | 22 | 0 | 20 | 127 | 14 | 121 | 2.02e-58 | 177 |
MS.gene45479.t1 | MTR_6g005150 | 65.354 | 127 | 30 | 3 | 22 | 147 | 26 | 139 | 1.71e-50 | 158 |
MS.gene45479.t1 | MTR_7g114050 | 61.029 | 136 | 42 | 2 | 5 | 140 | 4 | 128 | 4.62e-47 | 149 |
MS.gene45479.t1 | MTR_4g063300 | 74.286 | 105 | 22 | 1 | 43 | 147 | 10 | 109 | 1.88e-45 | 144 |
MS.gene45479.t1 | MTR_1g011750 | 60.177 | 113 | 43 | 2 | 19 | 130 | 23 | 134 | 6.88e-37 | 123 |
MS.gene45479.t1 | MTR_1g011850 | 60.177 | 113 | 43 | 2 | 19 | 130 | 23 | 134 | 6.88e-37 | 123 |
MS.gene45479.t1 | MTR_1g114050 | 57.983 | 119 | 48 | 2 | 9 | 126 | 10 | 127 | 9.52e-37 | 123 |
MS.gene45479.t1 | MTR_1g071040 | 62.500 | 104 | 37 | 2 | 24 | 126 | 28 | 130 | 2.59e-35 | 119 |
MS.gene45479.t1 | MTR_1g069770 | 48.958 | 96 | 48 | 1 | 43 | 137 | 9 | 104 | 4.63e-25 | 92.4 |
MS.gene45479.t1 | MTR_4g048490 | 43.810 | 105 | 30 | 2 | 22 | 126 | 26 | 101 | 8.60e-17 | 71.2 |
MS.gene45479.t1 | MTR_7g010440 | 70.588 | 51 | 15 | 0 | 76 | 126 | 122 | 172 | 1.52e-16 | 74.7 |
MS.gene45479.t1 | MTR_4g005910 | 74.419 | 43 | 11 | 0 | 85 | 127 | 4 | 46 | 2.31e-16 | 68.9 |
MS.gene45479.t1 | MTR_7g027610 | 41.818 | 110 | 38 | 3 | 18 | 126 | 10 | 94 | 1.02e-15 | 68.9 |
MS.gene45479.t1 | MTR_2g096590 | 75.000 | 40 | 10 | 0 | 108 | 147 | 12 | 51 | 6.54e-14 | 62.4 |
MS.gene45479.t1 | MTR_0653s0030 | 54.545 | 55 | 25 | 0 | 53 | 107 | 43 | 97 | 3.49e-12 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45479.t1 | AT5G02560 | 82.353 | 153 | 22 | 2 | 1 | 148 | 1 | 153 | 9.32e-80 | 233 |
MS.gene45479.t1 | AT5G27670 | 77.551 | 147 | 32 | 1 | 2 | 148 | 5 | 150 | 5.26e-76 | 223 |
MS.gene45479.t1 | AT5G02560 | 71.186 | 177 | 22 | 3 | 1 | 148 | 1 | 177 | 9.44e-75 | 221 |
MS.gene45479.t1 | AT5G59870 | 72.667 | 150 | 39 | 1 | 1 | 148 | 1 | 150 | 5.48e-73 | 215 |
MS.gene45479.t1 | AT1G51060 | 80.180 | 111 | 22 | 0 | 17 | 127 | 11 | 121 | 2.29e-60 | 182 |
MS.gene45479.t1 | AT1G08880 | 72.800 | 125 | 30 | 1 | 7 | 127 | 3 | 127 | 9.11e-59 | 179 |
MS.gene45479.t1 | AT4G27230 | 77.477 | 111 | 25 | 0 | 17 | 127 | 11 | 121 | 1.28e-58 | 178 |
MS.gene45479.t1 | AT4G27230 | 77.477 | 111 | 25 | 0 | 17 | 127 | 11 | 121 | 1.28e-58 | 178 |
MS.gene45479.t1 | AT5G54640 | 78.378 | 111 | 24 | 0 | 17 | 127 | 11 | 121 | 1.65e-58 | 178 |
MS.gene45479.t1 | AT1G54690 | 73.770 | 122 | 28 | 1 | 10 | 127 | 6 | 127 | 2.29e-58 | 178 |
MS.gene45479.t1 | AT3G20670 | 77.477 | 111 | 25 | 0 | 17 | 127 | 11 | 121 | 2.84e-58 | 177 |
MS.gene45479.t1 | AT2G38810 | 59.292 | 113 | 44 | 2 | 15 | 126 | 21 | 132 | 7.64e-37 | 123 |
MS.gene45479.t1 | AT2G38810 | 59.292 | 113 | 44 | 2 | 15 | 126 | 21 | 132 | 7.64e-37 | 123 |
MS.gene45479.t1 | AT2G38810 | 59.292 | 113 | 44 | 2 | 15 | 126 | 21 | 132 | 7.64e-37 | 123 |
MS.gene45479.t1 | AT2G38810 | 59.292 | 113 | 44 | 2 | 15 | 126 | 21 | 132 | 7.64e-37 | 123 |
MS.gene45479.t1 | AT1G52740 | 62.857 | 105 | 37 | 2 | 23 | 126 | 27 | 130 | 1.35e-35 | 120 |
MS.gene45479.t1 | AT3G54560 | 58.716 | 109 | 43 | 2 | 23 | 130 | 29 | 136 | 1.92e-34 | 117 |
MS.gene45479.t1 | AT3G54560 | 58.716 | 109 | 43 | 2 | 23 | 130 | 29 | 136 | 1.92e-34 | 117 |
MS.gene45479.t1 | AT4G13570 | 48.913 | 92 | 45 | 2 | 30 | 120 | 28 | 118 | 1.65e-20 | 81.3 |
MS.gene45479.t1 | AT4G13570 | 48.352 | 91 | 45 | 2 | 31 | 120 | 35 | 124 | 4.62e-20 | 80.5 |
Find 47 sgRNAs with CRISPR-Local
Find 51 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTAAGCCTTCTTTGGAGATT+TGG | 0.253652 | 2.1:+6997170 | None:intergenic |
GAAGCCTTCTCATTCTTCTT+AGG | 0.258486 | 2.1:+6997222 | None:intergenic |
AACTAAATCTAAGCCTTCTT+TGG | 0.259152 | 2.1:+6997162 | None:intergenic |
TTCTTCTTAGGTAAAAGAAT+TGG | 0.279364 | 2.1:+6997234 | None:intergenic |
CTTGTCACCGCCTTCTTCCT+TGG | 0.286829 | 2.1:+6997635 | None:intergenic |
ACCAGCTCCTTTCTTCGTCT+TGG | 0.348361 | 2.1:+6997673 | None:intergenic |
GGTAGCCTTGGATGGAGATT+TGG | 0.359896 | 2.1:+6997191 | None:intergenic |
AAAAGAATTGGGTTGATGTT+TGG | 0.366899 | 2.1:+6997246 | None:intergenic |
CTTTGGAGATTTGGTAGCCT+TGG | 0.379306 | 2.1:+6997179 | None:intergenic |
CAATTTCCAGTTGGAAGAAT+CGG | 0.397925 | 2.1:-6997593 | MS.gene45479:CDS |
AGAACAGCTGCAAGATAAAC+AGG | 0.409350 | 2.1:+6997521 | None:intergenic |
TCTTCTTAGGTAAAAGAATT+GGG | 0.411045 | 2.1:+6997235 | None:intergenic |
TTGTGTTCAGGTTCTTGAAT+TGG | 0.420978 | 2.1:-6997397 | MS.gene45479:intron |
TACCGACCGATTCTTCCAAC+TGG | 0.449917 | 2.1:+6997587 | None:intergenic |
TACGCTCAGCGTGTTGGTAC+TGG | 0.452334 | 2.1:-6997548 | MS.gene45479:CDS |
CACGTGACAACAAGAAGAAC+AGG | 0.464610 | 2.1:-6997362 | MS.gene45479:CDS |
TGGAAATTGAAGACCAGCTC+TGG | 0.468882 | 2.1:+6997607 | None:intergenic |
AAAGGAGCTGGTGGAAGGAA+AGG | 0.477487 | 2.1:-6997662 | MS.gene45479:CDS |
GCAAGCACCAAGACGAAGAA+AGG | 0.482883 | 2.1:-6997680 | MS.gene45479:CDS |
GTTCAGGTTCTTGAATTGGC+TGG | 0.491391 | 2.1:-6997393 | MS.gene45479:intron |
CATCCCTAGGCATTTGCTGT+TGG | 0.495579 | 2.1:-6997337 | MS.gene45479:CDS |
GAACTTGGAAAGTTGCTAGC+TGG | 0.514674 | 2.1:-6997297 | MS.gene45479:CDS |
GGCTACCAAATCTCCAAAGA+AGG | 0.519492 | 2.1:-6997175 | MS.gene45479:CDS |
GGAGATTTGGTAGCCTTGGA+TGG | 0.524077 | 2.1:+6997183 | None:intergenic |
GTGAGGAATGATGAAGAACT+TGG | 0.529342 | 2.1:-6997312 | MS.gene45479:CDS |
ATCGGTCGGTACTTGAAGAA+AGG | 0.536042 | 2.1:-6997575 | MS.gene45479:CDS |
GAAAGGTGGTCCAAGGAAGA+AGG | 0.553269 | 2.1:-6997645 | MS.gene45479:CDS |
TTTACCTAAGAAGAATGAGA+AGG | 0.555333 | 2.1:-6997226 | MS.gene45479:CDS |
CGAAGAAAGGAGCTGGTGGA+AGG | 0.557443 | 2.1:-6997667 | MS.gene45479:CDS |
TCTTGAATATCTTGCTGCTG+AGG | 0.561765 | 2.1:-6997501 | MS.gene45479:intron |
AAATTGAAGACCAGCTCTGG+TGG | 0.562253 | 2.1:+6997610 | None:intergenic |
GTGACAAGATCCACCAGAGC+TGG | 0.571539 | 2.1:-6997620 | MS.gene45479:CDS |
ACTGCCAACAGCAAATGCCT+AGG | 0.578012 | 2.1:+6997333 | None:intergenic |
ACCAAGACGAAGAAAGGAGC+TGG | 0.579581 | 2.1:-6997674 | MS.gene45479:CDS |
GGAAGATACGCTCAGCGTGT+TGG | 0.585684 | 2.1:-6997554 | MS.gene45479:CDS |
TGCTACCAAATCTCCATCCA+AGG | 0.591170 | 2.1:-6997196 | MS.gene45479:CDS |
GCTGGTCTTCAATTTCCAGT+TGG | 0.598252 | 2.1:-6997602 | MS.gene45479:CDS |
GTGGAAGGAAAGGTGGTCCA+AGG | 0.602831 | 2.1:-6997652 | MS.gene45479:CDS |
GGCATTTGCTGTTGGCAGTG+AGG | 0.603106 | 2.1:-6997329 | MS.gene45479:CDS |
CTGCCAACAGCAAATGCCTA+GGG | 0.606589 | 2.1:+6997334 | None:intergenic |
AGAAGAACAGGATCATCCCT+AGG | 0.619121 | 2.1:-6997350 | MS.gene45479:CDS |
TTCCAGTTGGAAGAATCGGT+CGG | 0.638316 | 2.1:-6997589 | MS.gene45479:CDS |
GGAGCTGGTGGAAGGAAAGG+TGG | 0.644393 | 2.1:-6997659 | MS.gene45479:CDS |
AAGACGAAGAAAGGAGCTGG+TGG | 0.662071 | 2.1:-6997671 | MS.gene45479:CDS |
GCTGGAGTTACAATTGCACA+TGG | 0.698871 | 2.1:-6997279 | MS.gene45479:CDS |
AGGTGGTCCAAGGAAGAAGG+CGG | 0.714301 | 2.1:-6997642 | MS.gene45479:CDS |
GGAGTTACAATTGCACATGG+TGG | 0.781867 | 2.1:-6997276 | MS.gene45479:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTTCAATTTCATCAAAATT+AGG | + | chr2.1:6997434-6997453 | None:intergenic | 15.0% |
!! | TTTCAATTTCATCAAAATTA+GGG | + | chr2.1:6997433-6997452 | None:intergenic | 15.0% |
!! | CAAATTTGAAAATCAAAAGA+GGG | + | chr2.1:6997401-6997420 | None:intergenic | 20.0% |
!! | TCAAATTTGAAAATCAAAAG+AGG | + | chr2.1:6997402-6997421 | None:intergenic | 20.0% |
! | TCTTCTTAGGTAAAAGAATT+GGG | + | chr2.1:6997624-6997643 | None:intergenic | 25.0% |
! | TTCTTCTTAGGTAAAAGAAT+TGG | + | chr2.1:6997625-6997644 | None:intergenic | 25.0% |
!!! | TTGAAATTTGATTTGTGTTC+AGG | - | chr2.1:6997447-6997466 | MS.gene45479:intron | 25.0% |
TTTACCTAAGAAGAATGAGA+AGG | - | chr2.1:6997630-6997649 | MS.gene45479:CDS | 30.0% | |
!! | AAAAGAATTGGGTTGATGTT+TGG | + | chr2.1:6997613-6997632 | None:intergenic | 30.0% |
CAATTTCCAGTTGGAAGAAT+CGG | - | chr2.1:6997263-6997282 | MS.gene45479:CDS | 35.0% | |
! | TTGTGTTCAGGTTCTTGAAT+TGG | - | chr2.1:6997459-6997478 | MS.gene45479:intron | 35.0% |
AGAACAGCTGCAAGATAAAC+AGG | + | chr2.1:6997338-6997357 | None:intergenic | 40.0% | |
GAAGCCTTCTCATTCTTCTT+AGG | + | chr2.1:6997637-6997656 | None:intergenic | 40.0% | |
GTGAGGAATGATGAAGAACT+TGG | - | chr2.1:6997544-6997563 | MS.gene45479:CDS | 40.0% | |
TCTTGAATATCTTGCTGCTG+AGG | - | chr2.1:6997355-6997374 | MS.gene45479:CDS | 40.0% | |
! | CTAAGCCTTCTTTGGAGATT+TGG | + | chr2.1:6997689-6997708 | None:intergenic | 40.0% |
AGAAGAACAGGATCATCCCT+AGG | - | chr2.1:6997506-6997525 | MS.gene45479:CDS | 45.0% | |
ATCGGTCGGTACTTGAAGAA+AGG | - | chr2.1:6997281-6997300 | MS.gene45479:CDS | 45.0% | |
CACGTGACAACAAGAAGAAC+AGG | - | chr2.1:6997494-6997513 | MS.gene45479:intron | 45.0% | |
GAACTTGGAAAGTTGCTAGC+TGG | - | chr2.1:6997559-6997578 | MS.gene45479:CDS | 45.0% | |
GCTGGAGTTACAATTGCACA+TGG | - | chr2.1:6997577-6997596 | MS.gene45479:CDS | 45.0% | |
GGAGTTACAATTGCACATGG+TGG | - | chr2.1:6997580-6997599 | MS.gene45479:CDS | 45.0% | |
GGCTACCAAATCTCCAAAGA+AGG | - | chr2.1:6997681-6997700 | MS.gene45479:CDS | 45.0% | |
TGCTACCAAATCTCCATCCA+AGG | - | chr2.1:6997660-6997679 | MS.gene45479:CDS | 45.0% | |
TGGAAATTGAAGACCAGCTC+TGG | + | chr2.1:6997252-6997271 | None:intergenic | 45.0% | |
TTCCAGTTGGAAGAATCGGT+CGG | - | chr2.1:6997267-6997286 | MS.gene45479:CDS | 45.0% | |
! | AAATTGAAGACCAGCTCTGG+TGG | + | chr2.1:6997249-6997268 | None:intergenic | 45.0% |
! | CTTTGGAGATTTGGTAGCCT+TGG | + | chr2.1:6997680-6997699 | None:intergenic | 45.0% |
! | GTTCAGGTTCTTGAATTGGC+TGG | - | chr2.1:6997463-6997482 | MS.gene45479:intron | 45.0% |
!! | GCTGGTCTTCAATTTCCAGT+TGG | - | chr2.1:6997254-6997273 | MS.gene45479:CDS | 45.0% |
AAAGGAGCTGGTGGAAGGAA+AGG | - | chr2.1:6997194-6997213 | MS.gene45479:CDS | 50.0% | |
AAGACGAAGAAAGGAGCTGG+TGG | - | chr2.1:6997185-6997204 | MS.gene45479:CDS | 50.0% | |
ACCAAGACGAAGAAAGGAGC+TGG | - | chr2.1:6997182-6997201 | MS.gene45479:CDS | 50.0% | |
ACCAGCTCCTTTCTTCGTCT+TGG | + | chr2.1:6997186-6997205 | None:intergenic | 50.0% | |
ACTGCCAACAGCAAATGCCT+AGG | + | chr2.1:6997526-6997545 | None:intergenic | 50.0% | |
CTGCCAACAGCAAATGCCTA+GGG | + | chr2.1:6997525-6997544 | None:intergenic | 50.0% | |
GAAAGGTGGTCCAAGGAAGA+AGG | - | chr2.1:6997211-6997230 | MS.gene45479:CDS | 50.0% | |
GCAAGCACCAAGACGAAGAA+AGG | - | chr2.1:6997176-6997195 | MS.gene45479:CDS | 50.0% | |
! | GGAGATTTGGTAGCCTTGGA+TGG | + | chr2.1:6997676-6997695 | None:intergenic | 50.0% |
! | GGTAGCCTTGGATGGAGATT+TGG | + | chr2.1:6997668-6997687 | None:intergenic | 50.0% |
! | TACCGACCGATTCTTCCAAC+TGG | + | chr2.1:6997272-6997291 | None:intergenic | 50.0% |
!! | CATCCCTAGGCATTTGCTGT+TGG | - | chr2.1:6997519-6997538 | MS.gene45479:CDS | 50.0% |
AGGTGGTCCAAGGAAGAAGG+CGG | - | chr2.1:6997214-6997233 | MS.gene45479:CDS | 55.0% | |
CGAAGAAAGGAGCTGGTGGA+AGG | - | chr2.1:6997189-6997208 | MS.gene45479:CDS | 55.0% | |
CTTGTCACCGCCTTCTTCCT+TGG | + | chr2.1:6997224-6997243 | None:intergenic | 55.0% | |
GGAAGATACGCTCAGCGTGT+TGG | - | chr2.1:6997302-6997321 | MS.gene45479:CDS | 55.0% | |
GTGACAAGATCCACCAGAGC+TGG | - | chr2.1:6997236-6997255 | MS.gene45479:CDS | 55.0% | |
GTGGAAGGAAAGGTGGTCCA+AGG | - | chr2.1:6997204-6997223 | MS.gene45479:CDS | 55.0% | |
! | TACGCTCAGCGTGTTGGTAC+TGG | - | chr2.1:6997308-6997327 | MS.gene45479:CDS | 55.0% |
!! | GGCATTTGCTGTTGGCAGTG+AGG | - | chr2.1:6997527-6997546 | MS.gene45479:CDS | 55.0% |
GGAGCTGGTGGAAGGAAAGG+TGG | - | chr2.1:6997197-6997216 | MS.gene45479:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 6997170 | 6997708 | 6997170 | ID=MS.gene45479 |
chr2.1 | mRNA | 6997170 | 6997708 | 6997170 | ID=MS.gene45479.t1;Parent=MS.gene45479 |
chr2.1 | exon | 6997502 | 6997708 | 6997502 | ID=MS.gene45479.t1.exon1;Parent=MS.gene45479.t1 |
chr2.1 | CDS | 6997502 | 6997708 | 6997502 | ID=cds.MS.gene45479.t1;Parent=MS.gene45479.t1 |
chr2.1 | exon | 6997170 | 6997409 | 6997170 | ID=MS.gene45479.t1.exon2;Parent=MS.gene45479.t1 |
chr2.1 | CDS | 6997170 | 6997409 | 6997170 | ID=cds.MS.gene45479.t1;Parent=MS.gene45479.t1 |
Gene Sequence |
Protein sequence |