Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51588.t1 | XP_003588865.1 | 97.6 | 41 | 1 | 0 | 1 | 41 | 116 | 156 | 1.20E-11 | 79.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51588.t1 | G7I884 | 97.6 | 41 | 1 | 0 | 1 | 41 | 116 | 156 | 8.7e-12 | 79.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene51588 | 0.805352 | 1.39E-49 | -1.69E-46 |
| MS.gene049501 | MS.gene51588 | 0.821187 | 4.61E-53 | -1.69E-46 |
| MS.gene050226 | MS.gene51588 | 0.828436 | 9.00E-55 | -1.69E-46 |
| MS.gene050227 | MS.gene51588 | 0.835811 | 1.35E-56 | -1.69E-46 |
| MS.gene050228 | MS.gene51588 | 0.84218 | 3.03E-58 | -1.69E-46 |
| MS.gene050303 | MS.gene51588 | 0.816062 | 6.71E-52 | -1.69E-46 |
| MS.gene050438 | MS.gene51588 | 0.829741 | 4.34E-55 | -1.69E-46 |
| MS.gene050442 | MS.gene51588 | 0.824496 | 7.82E-54 | -1.69E-46 |
| MS.gene050586 | MS.gene51588 | 0.803822 | 2.90E-49 | -1.69E-46 |
| MS.gene050719 | MS.gene51588 | 0.850544 | 1.59E-60 | -1.69E-46 |
| MS.gene050721 | MS.gene51588 | 0.848349 | 6.49E-60 | -1.69E-46 |
| MS.gene050724 | MS.gene51588 | 0.829063 | 6.35E-55 | -1.69E-46 |
| MS.gene050750 | MS.gene51588 | 0.805281 | 1.44E-49 | -1.69E-46 |
| MS.gene050780 | MS.gene51588 | 0.839004 | 2.05E-57 | -1.69E-46 |
| MS.gene050807 | MS.gene51588 | 0.813621 | 2.33E-51 | -1.69E-46 |
| MS.gene050820 | MS.gene51588 | 0.80751 | 4.88E-50 | -1.69E-46 |
| MS.gene050824 | MS.gene51588 | 0.809775 | 1.60E-50 | -1.69E-46 |
| MS.gene050844 | MS.gene51588 | 0.807143 | 5.84E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene51588 | 0.821982 | 3.02E-53 | -1.69E-46 |
| MS.gene051265 | MS.gene51588 | 0.831214 | 1.90E-55 | -1.69E-46 |
| MS.gene051744 | MS.gene51588 | 0.835736 | 1.41E-56 | -1.69E-46 |
| MS.gene052020 | MS.gene51588 | 0.826462 | 2.68E-54 | -1.69E-46 |
| MS.gene052176 | MS.gene51588 | 0.805975 | 1.03E-49 | -1.69E-46 |
| MS.gene052323 | MS.gene51588 | 0.803221 | 3.87E-49 | -1.69E-46 |
| MS.gene052376 | MS.gene51588 | 0.809622 | 1.73E-50 | -1.69E-46 |
| MS.gene052561 | MS.gene51588 | 0.812399 | 4.32E-51 | -1.69E-46 |
| MS.gene052582 | MS.gene51588 | 0.814036 | 1.89E-51 | -1.69E-46 |
| MS.gene052584 | MS.gene51588 | 0.803156 | 3.99E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene51588 | 0.806242 | 9.05E-50 | -1.69E-46 |
| MS.gene052896 | MS.gene51588 | 0.806669 | 7.35E-50 | -1.69E-46 |
| MS.gene053054 | MS.gene51588 | -0.814461 | 1.52E-51 | -1.69E-46 |
| MS.gene053221 | MS.gene51588 | 0.802598 | 5.20E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene51588 | 0.813327 | 2.71E-51 | -1.69E-46 |
| MS.gene053883 | MS.gene51588 | 0.813277 | 2.78E-51 | -1.69E-46 |
| MS.gene05414 | MS.gene51588 | 0.830756 | 2.45E-55 | -1.69E-46 |
| MS.gene05415 | MS.gene51588 | 0.829693 | 4.46E-55 | -1.69E-46 |
| MS.gene054236 | MS.gene51588 | 0.82292 | 1.83E-53 | -1.69E-46 |
| MS.gene054468 | MS.gene51588 | 0.80888 | 2.49E-50 | -1.69E-46 |
| MS.gene054576 | MS.gene51588 | 0.817704 | 2.87E-52 | -1.69E-46 |
| MS.gene05468 | MS.gene51588 | 0.801066 | 1.07E-48 | -1.69E-46 |
| MS.gene055357 | MS.gene51588 | 0.811499 | 6.79E-51 | -1.69E-46 |
| MS.gene055466 | MS.gene51588 | 0.804912 | 1.72E-49 | -1.69E-46 |
| MS.gene055608 | MS.gene51588 | 0.800879 | 1.17E-48 | -1.69E-46 |
| MS.gene055778 | MS.gene51588 | 0.829717 | 4.40E-55 | -1.69E-46 |
| MS.gene055818 | MS.gene51588 | 0.811009 | 8.67E-51 | -1.69E-46 |
| MS.gene056091 | MS.gene51588 | 0.807815 | 4.20E-50 | -1.69E-46 |
| MS.gene056366 | MS.gene51588 | 0.807674 | 4.50E-50 | -1.69E-46 |
| MS.gene056506 | MS.gene51588 | 0.82015 | 7.99E-53 | -1.69E-46 |
| MS.gene057060 | MS.gene51588 | 0.816753 | 4.70E-52 | -1.69E-46 |
| MS.gene057314 | MS.gene51588 | 0.818022 | 2.43E-52 | -1.69E-46 |
| MS.gene057414 | MS.gene51588 | 0.81256 | 3.99E-51 | -1.69E-46 |
| MS.gene057967 | MS.gene51588 | 0.807178 | 5.74E-50 | -1.69E-46 |
| MS.gene057980 | MS.gene51588 | 0.800748 | 1.25E-48 | -1.69E-46 |
| MS.gene058037 | MS.gene51588 | 0.81753 | 3.14E-52 | -1.69E-46 |
| MS.gene058084 | MS.gene51588 | 0.814605 | 1.41E-51 | -1.69E-46 |
| MS.gene058168 | MS.gene51588 | 0.810822 | 9.52E-51 | -1.69E-46 |
| MS.gene058906 | MS.gene51588 | 0.817775 | 2.77E-52 | -1.69E-46 |
| MS.gene059124 | MS.gene51588 | 0.80127 | 9.75E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene51588 | 0.83258 | 8.72E-56 | -1.69E-46 |
| MS.gene060322 | MS.gene51588 | 0.816455 | 5.48E-52 | -1.69E-46 |
| MS.gene060429 | MS.gene51588 | 0.822258 | 2.61E-53 | -1.69E-46 |
| MS.gene060572 | MS.gene51588 | 0.830536 | 2.78E-55 | -1.69E-46 |
| MS.gene060803 | MS.gene51588 | 0.805141 | 1.54E-49 | -1.69E-46 |
| MS.gene061040 | MS.gene51588 | -0.83077 | 2.44E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51588.t1 | MTR_1g014130 | 97.619 | 42 | 1 | 0 | 1 | 42 | 116 | 157 | 4.63e-22 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 40 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATGTAACGATTGCCATTA+CGG | 0.338649 | 1.3:+8224797 | None:intergenic |
| GCATGTGGAATAGAGGTGTT+AGG | 0.361458 | 1.3:+8224745 | None:intergenic |
| CGTTACATTCTTAACGGCCT+TGG | 0.390022 | 1.3:-8224784 | MS.gene51588:CDS |
| GGCAATCGTTACATTCTTAA+CGG | 0.402981 | 1.3:-8224790 | MS.gene51588:CDS |
| GTTACATTCTTAACGGCCTT+GGG | 0.420003 | 1.3:-8224783 | MS.gene51588:CDS |
| AATGTAACGATTGCCATTAC+GGG | 0.422728 | 1.3:+8224798 | None:intergenic |
| TCGAATTGTTCTTCGGAAGA+TGG | 0.432800 | 1.3:+8226304 | None:intergenic |
| GAGTACGTGGAGAAATTGCC+AGG | 0.434070 | 1.3:-8226265 | MS.gene51588:CDS |
| TGGACACTTGATGACCGTTC+AGG | 0.444647 | 1.3:-8224852 | MS.gene51588:CDS |
| CAATTTCTCCACGTACTCCT+TGG | 0.446252 | 1.3:+8226270 | None:intergenic |
| AATTTGATCGAATTGTTCTT+CGG | 0.466862 | 1.3:+8226297 | None:intergenic |
| CCAGGGGAGGATGTTGTTGG+TGG | 0.491352 | 1.3:-8226247 | MS.gene51588:intron |
| TTGCCAGGGGAGGATGTTGT+TGG | 0.491487 | 1.3:-8226250 | MS.gene51588:CDS |
| ACGACCTTTCAGGTCGAAGT+TGG | 0.494190 | 1.3:-8224872 | MS.gene51588:intron |
| ATTCGATCAAATTGATTCCA+AGG | 0.503194 | 1.3:-8226287 | MS.gene51588:CDS |
| CATGTGGAATAGAGGTGTTA+GGG | 0.512411 | 1.3:+8224746 | None:intergenic |
| ACGATTGCCATTACGGGGAT+AGG | 0.512688 | 1.3:+8224804 | None:intergenic |
| CGGCCTTGGGACTCCTTCTG+TGG | 0.535816 | 1.3:-8224770 | MS.gene51588:CDS |
| AGGAGCAGACTGGTCAAAAG+AGG | 0.536792 | 1.3:-8226333 | MS.gene51588:CDS |
| GTACAGAGCATGTGGAATAG+AGG | 0.549719 | 1.3:+8224738 | None:intergenic |
| TGCAACTCCTATCCCCGTAA+TGG | 0.557409 | 1.3:-8224811 | MS.gene51588:CDS |
| GCTGGTTAATCATGAGATGA+AGG | 0.560769 | 1.3:-8224677 | None:intergenic |
| GGATAGGAGTTGCAGTAGGT+TGG | 0.577617 | 1.3:+8224820 | None:intergenic |
| TCTATTCCACATGCTCTGTA+CGG | 0.579896 | 1.3:-8224736 | MS.gene51588:CDS |
| CCACCAACAACATCCTCCCC+TGG | 0.586657 | 1.3:+8226247 | None:intergenic |
| GATGACCGTTCAGGTCGTAA+AGG | 0.594105 | 1.3:-8224843 | MS.gene51588:CDS |
| GAGGTGTTAGGGGCCACAGA+AGG | 0.601422 | 1.3:+8224757 | None:intergenic |
| CTACATCCGTACAGAGCATG+TGG | 0.619181 | 1.3:+8224730 | None:intergenic |
| GTTGGCCTTTACGACCTGAA+CGG | 0.633386 | 1.3:+8224838 | None:intergenic |
| GGGCCACAGAAGGAGTCCCA+AGG | 0.639214 | 1.3:+8224767 | None:intergenic |
| CGTGGAGAAATTGCCAGGGG+AGG | 0.640583 | 1.3:-8226260 | MS.gene51588:CDS |
| AATTGATTCCAAGGAGTACG+TGG | 0.643895 | 1.3:-8226278 | MS.gene51588:CDS |
| ACGGGGATAGGAGTTGCAGT+AGG | 0.643987 | 1.3:+8224816 | None:intergenic |
| AGTACGTGGAGAAATTGCCA+GGG | 0.646997 | 1.3:-8226264 | MS.gene51588:CDS |
| ACGTGGCTTATCCTACACGC+TGG | 0.662801 | 1.3:-8224695 | MS.gene51588:CDS |
| ATGTGGAATAGAGGTGTTAG+GGG | 0.665472 | 1.3:+8224747 | None:intergenic |
| CTCATGATTAACCAGCGTGT+AGG | 0.666120 | 1.3:+8224684 | None:intergenic |
| ATGTAACGATTGCCATTACG+GGG | 0.694174 | 1.3:+8224799 | None:intergenic |
| TGTAGATCGTGATAATGACG+TGG | 0.716791 | 1.3:-8224712 | MS.gene51588:CDS |
| GTACGTGGAGAAATTGCCAG+GGG | 0.738965 | 1.3:-8226263 | MS.gene51588:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAATATATCTCAAAGA+TGG | + | chr1.3:8225185-8225204 | None:intergenic | 15.0% |
| !! | ACATAATTAGTTAATTCGTT+TGG | - | chr1.3:8225494-8225513 | MS.gene51588:intron | 20.0% |
| !! | ATAAATTTCCATTGTAGTTA+TGG | - | chr1.3:8225774-8225793 | MS.gene51588:intron | 20.0% |
| !! | CTACCAAAATACATAAAATA+TGG | + | chr1.3:8224962-8224981 | None:intergenic | 20.0% |
| !! | TATGATCTCTATCTAATTTA+GGG | - | chr1.3:8224993-8225012 | MS.gene51588:intron | 20.0% |
| !! | TTATGATCTCTATCTAATTT+AGG | - | chr1.3:8224992-8225011 | MS.gene51588:intron | 20.0% |
| !!! | AAAGGTAAAATTTGAGTTAT+TGG | - | chr1.3:8225693-8225712 | MS.gene51588:intron | 20.0% |
| !!! | AAGTATAGTTATTTCAGTTA+TGG | - | chr1.3:8226127-8226146 | MS.gene51588:intron | 20.0% |
| ! | AAATGTAATGATAAAGCTTG+TGG | - | chr1.3:8225962-8225981 | MS.gene51588:intron | 25.0% |
| ! | AATAACAGAAAACAGAGTTT+GGG | + | chr1.3:8224908-8224927 | None:intergenic | 25.0% |
| ! | AATGTAATGATAAAGCTTGT+GGG | - | chr1.3:8225963-8225982 | MS.gene51588:intron | 25.0% |
| ! | AATTTGATCGAATTGTTCTT+CGG | + | chr1.3:8224741-8224760 | None:intergenic | 25.0% |
| ! | CAACTCAATTAATAATGAGT+AGG | - | chr1.3:8226053-8226072 | MS.gene51588:intron | 25.0% |
| ! | CCAAAATACATAAAATATGG+AGG | + | chr1.3:8224959-8224978 | None:intergenic | 25.0% |
| ! | CTACTCATTATTAATTGAGT+TGG | + | chr1.3:8226055-8226074 | None:intergenic | 25.0% |
| ! | TAATGAGAAAATGAAAGCTA+AGG | + | chr1.3:8225553-8225572 | None:intergenic | 25.0% |
| !! | ATAGTTATTTCAGTTATGGA+CGG | - | chr1.3:8226131-8226150 | MS.gene51588:intron | 25.0% |
| !! | ATTGTTGGTTGAATTATTCA+AGG | - | chr1.3:8225668-8225687 | MS.gene51588:intron | 25.0% |
| !! | CCTCCATATTTTATGTATTT+TGG | - | chr1.3:8224956-8224975 | MS.gene51588:intron | 25.0% |
| !! | TTGTTGGTTGAATTATTCAA+GGG | - | chr1.3:8225669-8225688 | MS.gene51588:intron | 25.0% |
| !!! | ATTGAGTTTTAGCAAAAGTT+CGG | - | chr1.3:8225215-8225234 | MS.gene51588:intron | 25.0% |
| !!! | TTTTGTTTAAAGCAGTTTAG+TGG | + | chr1.3:8225585-8225604 | None:intergenic | 25.0% |
| AAAACAGAGTTTGGGTAATA+AGG | + | chr1.3:8224900-8224919 | None:intergenic | 30.0% | |
| AAACAGAGTTTGGGTAATAA+GGG | + | chr1.3:8224899-8224918 | None:intergenic | 30.0% | |
| AATACGATTATACGACTGAA+GGG | - | chr1.3:8225296-8225315 | MS.gene51588:intron | 30.0% | |
| AATTGATCCTCTATAACCAA+AGG | + | chr1.3:8226101-8226120 | None:intergenic | 30.0% | |
| ATTATTTGATGAGTGGTTCT+GGG | - | chr1.3:8225933-8225952 | MS.gene51588:intron | 30.0% | |
| CAATAACAGAAAACAGAGTT+TGG | + | chr1.3:8224909-8224928 | None:intergenic | 30.0% | |
| GCAACGAAGTTAAAAATCAT+AGG | - | chr1.3:8225122-8225141 | MS.gene51588:intron | 30.0% | |
| GGTTATATGAGATTTGAATG+TGG | - | chr1.3:8225143-8225162 | MS.gene51588:intron | 30.0% | |
| GTGTATAAGTAGAACAAAAG+AGG | - | chr1.3:8225861-8225880 | MS.gene51588:intron | 30.0% | |
| GTGTTTGATTATTTGATGAG+TGG | - | chr1.3:8225926-8225945 | MS.gene51588:intron | 30.0% | |
| GTTGAATTATTCAAGGGAAA+AGG | - | chr1.3:8225675-8225694 | MS.gene51588:intron | 30.0% | |
| TAATACGATTATACGACTGA+AGG | - | chr1.3:8225295-8225314 | MS.gene51588:intron | 30.0% | |
| TACTAGTTAGATTTCCTGAA+TGG | - | chr1.3:8225721-8225740 | MS.gene51588:intron | 30.0% | |
| TATATGAGATTTGAATGTGG+AGG | - | chr1.3:8225146-8225165 | MS.gene51588:intron | 30.0% | |
| TCAAGATCCTTACACTAATA+AGG | + | chr1.3:8225755-8225774 | None:intergenic | 30.0% | |
| TTCATTTAGCAAGTGATCTT+AGG | - | chr1.3:8225527-8225546 | MS.gene51588:intron | 30.0% | |
| ! | AACAAAAGAGGCATGAAATA+AGG | - | chr1.3:8225873-8225892 | MS.gene51588:intron | 30.0% |
| ! | AATTTAGCCTTTGGTTATAG+AGG | - | chr1.3:8226091-8226110 | MS.gene51588:intron | 30.0% |
| ! | ATTCGATCAAATTGATTCCA+AGG | - | chr1.3:8224748-8224767 | MS.gene51588:CDS | 30.0% |
| ! | TGAACTCTTAATTTAGCCTT+TGG | - | chr1.3:8226082-8226101 | MS.gene51588:intron | 30.0% |
| !! | TAGCGAGTTTTGATGTTTAT+CGG | - | chr1.3:8225361-8225380 | MS.gene51588:intron | 30.0% |
| AATGCACACCTAATGTCTAT+GGG | - | chr1.3:8225797-8225816 | MS.gene51588:intron | 35.0% | |
| AATGTAACGATTGCCATTAC+GGG | + | chr1.3:8226240-8226259 | None:intergenic | 35.0% | |
| AGGTTCACCTTATTAGTGTA+AGG | - | chr1.3:8225745-8225764 | MS.gene51588:intron | 35.0% | |
| ATCAACAGTACACTAACAGA+AGG | + | chr1.3:8225416-8225435 | None:intergenic | 35.0% | |
| GAATGTAACGATTGCCATTA+CGG | + | chr1.3:8226241-8226260 | None:intergenic | 35.0% | |
| GATTATTTGATGAGTGGTTC+TGG | - | chr1.3:8225932-8225951 | MS.gene51588:intron | 35.0% | |
| GGCAATCGTTACATTCTTAA+CGG | - | chr1.3:8226245-8226264 | MS.gene51588:intron | 35.0% | |
| TGTGCATTCCATAACTACAA+TGG | + | chr1.3:8225785-8225804 | None:intergenic | 35.0% | |
| TTTATTCTCACAAAACCCTC+AGG | + | chr1.3:8225078-8225097 | None:intergenic | 35.0% | |
| !! | AGCGAGTTTTGATGTTTATC+GGG | - | chr1.3:8225362-8225381 | MS.gene51588:intron | 35.0% |
| !! | AGTTTTAGCAAAAGTTCGGA+AGG | - | chr1.3:8225219-8225238 | MS.gene51588:intron | 35.0% |
| !! | TTCGGAAGGTATTTACCATA+GGG | - | chr1.3:8225233-8225252 | MS.gene51588:intron | 35.0% |
| AAATAAGGCAACAAGGTCAC+TGG | - | chr1.3:8225888-8225907 | MS.gene51588:intron | 40.0% | |
| ACAGTACACTAACAGAAGGT+AGG | + | chr1.3:8225412-8225431 | None:intergenic | 40.0% | |
| AGGCATGAAATAAGGCAACA+AGG | - | chr1.3:8225881-8225900 | MS.gene51588:intron | 40.0% | |
| AGTTAGATTTCCTGAATGGC+AGG | - | chr1.3:8225725-8225744 | MS.gene51588:intron | 40.0% | |
| ATGTAACGATTGCCATTACG+GGG | + | chr1.3:8226239-8226258 | None:intergenic | 40.0% | |
| CAAAACTCGCTAAAAGAGTG+AGG | + | chr1.3:8225353-8225372 | None:intergenic | 40.0% | |
| CACCCAGTTATTCAAGCTTA+AGG | + | chr1.3:8225823-8225842 | None:intergenic | 40.0% | |
| CAGTACACTAACAGAAGGTA+GGG | + | chr1.3:8225411-8225430 | None:intergenic | 40.0% | |
| CCAACAATCATGAAAGAGAC+TGG | + | chr1.3:8225656-8225675 | None:intergenic | 40.0% | |
| CCAGTCTCTTTCATGATTGT+TGG | - | chr1.3:8225653-8225672 | MS.gene51588:intron | 40.0% | |
| GAATGCACACCTAATGTCTA+TGG | - | chr1.3:8225796-8225815 | MS.gene51588:intron | 40.0% | |
| GACTCTTCACATATAACGCA+AGG | + | chr1.3:8225331-8225350 | None:intergenic | 40.0% | |
| GCTCATTAGTACAGTGATGA+TGG | + | chr1.3:8226014-8226033 | None:intergenic | 40.0% | |
| GGCCTTAAGCTTGAATAACT+GGG | - | chr1.3:8225818-8225837 | MS.gene51588:intron | 40.0% | |
| GTTACATTCTTAACGGCCTT+GGG | - | chr1.3:8226252-8226271 | MS.gene51588:CDS | 40.0% | |
| TCGAATTGTTCTTCGGAAGA+TGG | + | chr1.3:8224734-8224753 | None:intergenic | 40.0% | |
| TCTATTCCACATGCTCTGTA+CGG | - | chr1.3:8226299-8226318 | MS.gene51588:CDS | 40.0% | |
| ! | AATTGATTCCAAGGAGTACG+TGG | - | chr1.3:8224757-8224776 | MS.gene51588:CDS | 40.0% |
| ! | GTTGATTGTACTGATGAGTG+CGG | - | chr1.3:8225430-8225449 | MS.gene51588:intron | 40.0% |
| ! | TAGTAGTGGAAGCAGTATCA+AGG | - | chr1.3:8224814-8224833 | MS.gene51588:CDS | 40.0% |
| ! | TGATGACGATGATGATGATG+AGG | - | chr1.3:8224865-8224884 | MS.gene51588:intron | 40.0% |
| ! | TGTAGATCGTGATAATGACG+TGG | - | chr1.3:8226323-8226342 | MS.gene51588:CDS | 40.0% |
| !! | AAGTTTTATGAGGAGCAGAC+TGG | - | chr1.3:8224692-8224711 | MS.gene51588:CDS | 40.0% |
| !! | ATGTGGAATAGAGGTGTTAG+GGG | + | chr1.3:8226291-8226310 | None:intergenic | 40.0% |
| !! | CATGTGGAATAGAGGTGTTA+GGG | + | chr1.3:8226292-8226311 | None:intergenic | 40.0% |
| !! | GGTGGAGCAAAAGTTTTATG+AGG | - | chr1.3:8224682-8224701 | MS.gene51588:CDS | 40.0% |
| !! | GTTCGGAAGGTATTTACCAT+AGG | - | chr1.3:8225232-8225251 | MS.gene51588:intron | 40.0% |
| AGTACGTGGAGAAATTGCCA+GGG | - | chr1.3:8224771-8224790 | MS.gene51588:CDS | 45.0% | |
| ATAAGGTGAACCTGCCATTC+AGG | + | chr1.3:8225738-8225757 | None:intergenic | 45.0% | |
| CAATTTCTCCACGTACTCCT+TGG | + | chr1.3:8224768-8224787 | None:intergenic | 45.0% | |
| CGTTACATTCTTAACGGCCT+TGG | - | chr1.3:8226251-8226270 | MS.gene51588:CDS | 45.0% | |
| CTCATGATTAACCAGCGTGT+AGG | + | chr1.3:8226354-8226373 | None:intergenic | 45.0% | |
| GCTTAAGGCCCATAGACATT+AGG | + | chr1.3:8225808-8225827 | None:intergenic | 45.0% | |
| GGGCCTTAAGCTTGAATAAC+TGG | - | chr1.3:8225817-8225836 | MS.gene51588:intron | 45.0% | |
| GTACAGAGCATGTGGAATAG+AGG | + | chr1.3:8226300-8226319 | None:intergenic | 45.0% | |
| GTTCTGATATGTGAGCCTGA+GGG | - | chr1.3:8225060-8225079 | MS.gene51588:intron | 45.0% | |
| TTTCAGTTATGGACGGAGAG+TGG | - | chr1.3:8226138-8226157 | MS.gene51588:intron | 45.0% | |
| ! | AGTTCTGATATGTGAGCCTG+AGG | - | chr1.3:8225059-8225078 | MS.gene51588:intron | 45.0% |
| ! | CATTCTAGTTGCAAGCCCTA+TGG | + | chr1.3:8225251-8225270 | None:intergenic | 45.0% |
| !! | AACAAGGTCACTGGTTCTAG+TGG | - | chr1.3:8225897-8225916 | MS.gene51588:intron | 45.0% |
| !! | ATTTGATGAGTGGTTCTGGG+AGG | - | chr1.3:8225936-8225955 | MS.gene51588:intron | 45.0% |
| !! | GCATGTGGAATAGAGGTGTT+AGG | + | chr1.3:8226293-8226312 | None:intergenic | 45.0% |
| !! | GTTGTTGGTGGTAGTAGTAG+TGG | - | chr1.3:8224800-8224819 | MS.gene51588:CDS | 45.0% |
| ACGATTGCCATTACGGGGAT+AGG | + | chr1.3:8226234-8226253 | None:intergenic | 50.0% | |
| CTACATCCGTACAGAGCATG+TGG | + | chr1.3:8226308-8226327 | None:intergenic | 50.0% | |
| GAGTACGTGGAGAAATTGCC+AGG | - | chr1.3:8224770-8224789 | MS.gene51588:CDS | 50.0% | |
| GATGACCGTTCAGGTCGTAA+AGG | - | chr1.3:8226192-8226211 | MS.gene51588:intron | 50.0% | |
| GGATAGGAGTTGCAGTAGGT+TGG | + | chr1.3:8226218-8226237 | None:intergenic | 50.0% | |
| GTACGTGGAGAAATTGCCAG+GGG | - | chr1.3:8224772-8224791 | MS.gene51588:CDS | 50.0% | |
| GTGTCCAACTTCGACCTGAA+AGG | + | chr1.3:8226170-8226189 | None:intergenic | 50.0% | |
| TGCAACTCCTATCCCCGTAA+TGG | - | chr1.3:8226224-8226243 | MS.gene51588:intron | 50.0% | |
| ! | ACGACCTTTCAGGTCGAAGT+TGG | - | chr1.3:8226163-8226182 | MS.gene51588:intron | 50.0% |
| ! | AGGAGCAGACTGGTCAAAAG+AGG | - | chr1.3:8224702-8224721 | MS.gene51588:CDS | 50.0% |
| ! | TGGACACTTGATGACCGTTC+AGG | - | chr1.3:8226183-8226202 | MS.gene51588:intron | 50.0% |
| !! | GTTGGCCTTTACGACCTGAA+CGG | + | chr1.3:8226200-8226219 | None:intergenic | 50.0% |
| ACGGGGATAGGAGTTGCAGT+AGG | + | chr1.3:8226222-8226241 | None:intergenic | 55.0% | |
| ACGTGGCTTATCCTACACGC+TGG | - | chr1.3:8226340-8226359 | MS.gene51588:CDS | 55.0% | |
| GAGAGTGGAGACGACCTTTC+AGG | - | chr1.3:8226153-8226172 | MS.gene51588:intron | 55.0% | |
| TTGCCAGGGGAGGATGTTGT+TGG | - | chr1.3:8224785-8224804 | MS.gene51588:CDS | 55.0% | |
| CCACCAACAACATCCTCCCC+TGG | + | chr1.3:8224791-8224810 | None:intergenic | 60.0% | |
| CCAGGGGAGGATGTTGTTGG+TGG | - | chr1.3:8224788-8224807 | MS.gene51588:CDS | 60.0% | |
| CGTGGAGAAATTGCCAGGGG+AGG | - | chr1.3:8224775-8224794 | MS.gene51588:CDS | 60.0% | |
| ! | GAGGTGTTAGGGGCCACAGA+AGG | + | chr1.3:8226281-8226300 | None:intergenic | 60.0% |
| CGGCCTTGGGACTCCTTCTG+TGG | - | chr1.3:8226265-8226284 | MS.gene51588:CDS | 65.0% | |
| GGGCCACAGAAGGAGTCCCA+AGG | + | chr1.3:8226271-8226290 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 8224680 | 8226377 | 8224680 | ID=MS.gene51588 |
| chr1.3 | mRNA | 8224680 | 8226377 | 8224680 | ID=MS.gene51588.t1;Parent=MS.gene51588 |
| chr1.3 | exon | 8226248 | 8226377 | 8226248 | ID=MS.gene51588.t1.exon1;Parent=MS.gene51588.t1 |
| chr1.3 | CDS | 8226248 | 8226377 | 8226248 | ID=cds.MS.gene51588.t1;Parent=MS.gene51588.t1 |
| chr1.3 | exon | 8224680 | 8224882 | 8224680 | ID=MS.gene51588.t1.exon2;Parent=MS.gene51588.t1 |
| chr1.3 | CDS | 8224680 | 8224882 | 8224680 | ID=cds.MS.gene51588.t1;Parent=MS.gene51588.t1 |
| Gene Sequence |
| Protein sequence |
