Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51641.t1 | XP_003598275.1 | 84.7 | 575 | 63 | 1 | 1 | 550 | 1 | 575 | 4.90E-231 | 810.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51641.t1 | Q9FH18 | 29.5 | 511 | 301 | 18 | 40 | 539 | 15 | 477 | 7.7e-23 | 110.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51641.t1 | G7J0C1 | 84.7 | 575 | 63 | 1 | 1 | 550 | 1 | 575 | 3.6e-231 | 810.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene51641 | 0.820059 | 8.38E-53 | -1.69E-46 |
| MS.gene049499 | MS.gene51641 | 0.813828 | 2.10E-51 | -1.69E-46 |
| MS.gene049983 | MS.gene51641 | 0.80745 | 5.03E-50 | -1.69E-46 |
| MS.gene050359 | MS.gene51641 | 0.822099 | 2.84E-53 | -1.69E-46 |
| MS.gene050646 | MS.gene51641 | 0.839306 | 1.71E-57 | -1.69E-46 |
| MS.gene050654 | MS.gene51641 | 0.819433 | 1.16E-52 | -1.69E-46 |
| MS.gene050752 | MS.gene51641 | 0.852773 | 3.70E-61 | -1.69E-46 |
| MS.gene050838 | MS.gene51641 | 0.81917 | 1.34E-52 | -1.69E-46 |
| MS.gene050955 | MS.gene51641 | 0.825509 | 4.51E-54 | -1.69E-46 |
| MS.gene051003 | MS.gene51641 | 0.87285 | 2.32E-67 | -1.69E-46 |
| MS.gene051233 | MS.gene51641 | 0.818731 | 1.68E-52 | -1.69E-46 |
| MS.gene051234 | MS.gene51641 | 0.837143 | 6.18E-57 | -1.69E-46 |
| MS.gene051343 | MS.gene51641 | 0.809279 | 2.05E-50 | -1.69E-46 |
| MS.gene051856 | MS.gene51641 | 0.811582 | 6.51E-51 | -1.69E-46 |
| MS.gene051902 | MS.gene51641 | 0.821005 | 5.08E-53 | -1.69E-46 |
| MS.gene051975 | MS.gene51641 | 0.804382 | 2.22E-49 | -1.69E-46 |
| MS.gene052072 | MS.gene51641 | 0.840136 | 1.04E-57 | -1.69E-46 |
| MS.gene052242 | MS.gene51641 | -0.820323 | 7.29E-53 | -1.69E-46 |
| MS.gene052296 | MS.gene51641 | 0.826635 | 2.43E-54 | -1.69E-46 |
| MS.gene052335 | MS.gene51641 | 0.810589 | 1.07E-50 | -1.69E-46 |
| MS.gene052342 | MS.gene51641 | 0.809788 | 1.59E-50 | -1.69E-46 |
| MS.gene052434 | MS.gene51641 | 0.81591 | 7.26E-52 | -1.69E-46 |
| MS.gene052479 | MS.gene51641 | 0.834664 | 2.63E-56 | -1.69E-46 |
| MS.gene052932 | MS.gene51641 | 0.816439 | 5.53E-52 | -1.69E-46 |
| MS.gene053058 | MS.gene51641 | 0.835373 | 1.74E-56 | -1.69E-46 |
| MS.gene053167 | MS.gene51641 | 0.811657 | 6.27E-51 | -1.69E-46 |
| MS.gene053456 | MS.gene51641 | 0.811582 | 6.52E-51 | -1.69E-46 |
| MS.gene053564 | MS.gene51641 | 0.800359 | 1.50E-48 | -1.69E-46 |
| MS.gene053726 | MS.gene51641 | 0.805866 | 1.09E-49 | -1.69E-46 |
| MS.gene053879 | MS.gene51641 | 0.826768 | 2.26E-54 | -1.69E-46 |
| MS.gene054004 | MS.gene51641 | 0.814228 | 1.71E-51 | -1.69E-46 |
| MS.gene054403 | MS.gene51641 | 0.851029 | 1.16E-60 | -1.69E-46 |
| MS.gene05517 | MS.gene51641 | 0.803941 | 2.74E-49 | -1.69E-46 |
| MS.gene056045 | MS.gene51641 | 0.801651 | 8.14E-49 | -1.69E-46 |
| MS.gene056181 | MS.gene51641 | 0.841041 | 6.04E-58 | -1.69E-46 |
| MS.gene056699 | MS.gene51641 | 0.806632 | 7.49E-50 | -1.69E-46 |
| MS.gene056787 | MS.gene51641 | 0.819391 | 1.19E-52 | -1.69E-46 |
| MS.gene057102 | MS.gene51641 | 0.805993 | 1.02E-49 | -1.69E-46 |
| MS.gene057705 | MS.gene51641 | 0.805545 | 1.27E-49 | -1.69E-46 |
| MS.gene05781 | MS.gene51641 | 0.826645 | 2.42E-54 | -1.69E-46 |
| MS.gene057999 | MS.gene51641 | 0.813604 | 2.35E-51 | -1.69E-46 |
| MS.gene058054 | MS.gene51641 | 0.810888 | 9.22E-51 | -1.69E-46 |
| MS.gene058159 | MS.gene51641 | 0.801622 | 8.26E-49 | -1.69E-46 |
| MS.gene058261 | MS.gene51641 | 0.815482 | 9.04E-52 | -1.69E-46 |
| MS.gene059146 | MS.gene51641 | 0.84285 | 2.01E-58 | -1.69E-46 |
| MS.gene060763 | MS.gene51641 | 0.811056 | 8.47E-51 | -1.69E-46 |
| MS.gene060932 | MS.gene51641 | 0.80137 | 9.30E-49 | -1.69E-46 |
| MS.gene060935 | MS.gene51641 | 0.800817 | 1.21E-48 | -1.69E-46 |
| MS.gene060937 | MS.gene51641 | 0.812167 | 4.86E-51 | -1.69E-46 |
| MS.gene061100 | MS.gene51641 | 0.815328 | 9.78E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51641.t1 | MTR_3g009740 | 92.696 | 575 | 17 | 1 | 1 | 550 | 1 | 575 | 0.0 | 1054 |
| MS.gene51641.t1 | MTR_8g070940 | 44.813 | 241 | 118 | 6 | 311 | 548 | 94 | 322 | 2.87e-48 | 171 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51641.t1 | AT4G26455 | 33.075 | 517 | 226 | 20 | 46 | 548 | 52 | 462 | 4.98e-48 | 174 |
| MS.gene51641.t1 | AT5G56210 | 33.684 | 475 | 255 | 19 | 75 | 539 | 53 | 477 | 1.55e-39 | 151 |
| MS.gene51641.t1 | AT3G13360 | 29.602 | 527 | 268 | 19 | 37 | 550 | 23 | 459 | 2.79e-26 | 112 |
| MS.gene51641.t1 | AT3G13360 | 29.602 | 527 | 268 | 19 | 37 | 550 | 82 | 518 | 4.00e-26 | 112 |
Find 137 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACAACAACCCCAGAATTT+TGG | 0.122979 | 3.4:-4727719 | None:intergenic |
| TATCAATCTCCCTGAATTTC+TGG | 0.176921 | 3.4:-4727020 | None:intergenic |
| TTTCAATTTGATGGTAATTT+TGG | 0.182717 | 3.4:+4724376 | MS.gene51641:CDS |
| AAGGGTTCTGATGAGAAATT+AGG | 0.189886 | 3.4:+4724352 | MS.gene51641:CDS |
| GAAGGAATTGTTGCTGAATT+AGG | 0.201287 | 3.4:+4724415 | MS.gene51641:CDS |
| TTCAACCCAACACCCTTTCT+TGG | 0.224104 | 3.4:-4724469 | None:intergenic |
| TTGAAATTGAAATATGGATT+TGG | 0.250648 | 3.4:+4724279 | None:intergenic |
| TCACAGTTATCCCAAAATTC+TGG | 0.258625 | 3.4:+4727708 | MS.gene51641:intron |
| GAAACAACATGTAAACCTTT+TGG | 0.279724 | 3.4:+4727209 | MS.gene51641:CDS |
| ACCCTTTCTTGGTGCCCCTT+TGG | 0.281354 | 3.4:-4724458 | None:intergenic |
| TTGCAGAAGTCCAGAAATTC+AGG | 0.282661 | 3.4:+4727010 | MS.gene51641:intron |
| GTGTTGGCAGATTCTTCTTT+AGG | 0.285615 | 3.4:-4727321 | None:intergenic |
| AGATTTACAATTTACATTAT+TGG | 0.289460 | 3.4:+4727458 | MS.gene51641:CDS |
| TGAAGAAATGGAAGAGAATT+AGG | 0.292227 | 3.4:+4724488 | MS.gene51641:CDS |
| TTCTGATGGGCATGCGATCC+GGG | 0.314140 | 3.4:+4724669 | MS.gene51641:CDS |
| GAATTAGGAGGAATGTTGTT+AGG | 0.319758 | 3.4:+4724503 | MS.gene51641:CDS |
| AACCTTCTTCAAGTGCTTCC+TGG | 0.322107 | 3.4:-4725266 | None:intergenic |
| GATGGGTCTTCGAGCGCGTT+TGG | 0.325703 | 3.4:+4724634 | MS.gene51641:CDS |
| TGAAATTGAAATATGGATTT+GGG | 0.329850 | 3.4:+4724280 | None:intergenic |
| GCTGGTTATGGCAACGAAAA+TGG | 0.341150 | 3.4:+4725111 | MS.gene51641:CDS |
| ACCCCTCTTCAAAACCTTAC+CGG | 0.347847 | 3.4:-4724551 | None:intergenic |
| CACTTAACTGAGTCGTCTTC+TGG | 0.349970 | 3.4:-4727057 | None:intergenic |
| GGTATCACTGCTGTTGATCT+TGG | 0.353511 | 3.4:+4727096 | MS.gene51641:CDS |
| ATCCTTTGATCGAGTCTATC+AGG | 0.353744 | 3.4:+4725229 | MS.gene51641:CDS |
| TTTCTGATGGGCATGCGATC+CGG | 0.358556 | 3.4:+4724668 | MS.gene51641:CDS |
| GGAACTTGAAGCAGCTTGAT+TGG | 0.364131 | 3.4:-4727163 | None:intergenic |
| CGAGTCTATCAGGAGCCTTC+AGG | 0.370738 | 3.4:+4725239 | MS.gene51641:CDS |
| AAGAGGGGTTTATCTGGGTC+TGG | 0.371412 | 3.4:+4724565 | MS.gene51641:CDS |
| GCAACAATTCCTTCTTGATC+TGG | 0.373469 | 3.4:-4724406 | None:intergenic |
| AAATTAGGGTTTCAATTTGA+TGG | 0.377302 | 3.4:+4724367 | MS.gene51641:CDS |
| GAAGTGAATCACGATGAAAA+TGG | 0.378652 | 3.4:+4724325 | MS.gene51641:CDS |
| TGATGCAGAACTTGAAGGTT+GGG | 0.388770 | 3.4:+4727433 | MS.gene51641:CDS |
| AGGGTGTTGGGTTGAAGAAA+TGG | 0.389666 | 3.4:+4724476 | MS.gene51641:CDS |
| ATGGGTCTTCGAGCGCGTTT+GGG | 0.392314 | 3.4:+4724635 | MS.gene51641:CDS |
| TGAAAATCTGCGGGGTGTTA+AGG | 0.392736 | 3.4:+4724603 | MS.gene51641:CDS |
| GGAAAATTCTATTTCCAGCT+TGG | 0.397790 | 3.4:+4724945 | MS.gene51641:CDS |
| TTCCAAAGGGGCACCAAGAA+AGG | 0.398469 | 3.4:+4724456 | MS.gene51641:CDS |
| TGCTTGCTACGAAGGATTCT+AGG | 0.403279 | 3.4:+4727259 | MS.gene51641:CDS |
| CACAGTTATCCCAAAATTCT+GGG | 0.411552 | 3.4:+4727709 | MS.gene51641:intron |
| TCTAGATATGCAGTTGGATC+TGG | 0.415064 | 3.4:+4724706 | MS.gene51641:CDS |
| TCAAGCTGCTTCAAGTTCCT+TGG | 0.417796 | 3.4:+4727167 | MS.gene51641:CDS |
| TTTAGTGAACTCGGCTCAAA+AGG | 0.417990 | 3.4:+4724852 | MS.gene51641:CDS |
| AAGGAAGATGAAGCTGGTTA+TGG | 0.424672 | 3.4:+4725099 | MS.gene51641:CDS |
| TTTAGTACAGTTACTAGTAA+TGG | 0.427692 | 3.4:+4725003 | MS.gene51641:CDS |
| AGGGTTCTGATGAGAAATTA+GGG | 0.427817 | 3.4:+4724353 | MS.gene51641:CDS |
| CAGGAGCCTTCAGGCTGTCC+AGG | 0.431092 | 3.4:+4725248 | MS.gene51641:CDS |
| GATCATAGATGCGGAGAGTA+AGG | 0.438137 | 3.4:+4727527 | MS.gene51641:CDS |
| CAGATTCGAGATCCAACTAT+AGG | 0.441179 | 3.4:+4724971 | MS.gene51641:CDS |
| AATTAGGAGGAATGTTGTTA+GGG | 0.443869 | 3.4:+4724504 | MS.gene51641:CDS |
| CCTTTCTCATGCCTCACCTT+CGG | 0.447954 | 3.4:-4724799 | None:intergenic |
| CCTCCAGCTTGCTTTCCAAA+AGG | 0.451050 | 3.4:-4727224 | None:intergenic |
| ATAACCAGCTTCATCTTCCT+TGG | 0.452817 | 3.4:-4725097 | None:intergenic |
| TGGTGAAGATGAAGATCTAC+AGG | 0.463551 | 3.4:+4725131 | MS.gene51641:CDS |
| TGGTGATAGTTTAGTAATTG+AGG | 0.464590 | 3.4:+4727593 | MS.gene51641:CDS |
| TCACGATGAAAATGGAATCA+AGG | 0.466507 | 3.4:+4724333 | MS.gene51641:CDS |
| ATTGAGAGCTCTGCGAAACC+TGG | 0.470452 | 3.4:+4724895 | MS.gene51641:CDS |
| GGGCACCAAGAAAGGGTGTT+GGG | 0.470626 | 3.4:+4724464 | MS.gene51641:CDS |
| AAAGACACCTTGCCTATAGT+TGG | 0.470804 | 3.4:-4724983 | None:intergenic |
| ATGAGAAAGGCCGTGGTAGT+AGG | 0.471311 | 3.4:+4724812 | MS.gene51641:CDS |
| GATCTTCAGCACTTGTAGAC+TGG | 0.475844 | 3.4:-4725209 | None:intergenic |
| CTCTACTTCTTTATAACCTA+GGG | 0.478091 | 3.4:-4727343 | None:intergenic |
| TAAGGTGATGCAGAACTTGA+AGG | 0.479356 | 3.4:+4727428 | MS.gene51641:CDS |
| ACTCTACTTCTTTATAACCT+AGG | 0.480486 | 3.4:-4727344 | None:intergenic |
| TTGACTCTTCCACCACCTCC+AGG | 0.481693 | 3.4:-4724913 | None:intergenic |
| AATTCGAGTGCTGATGAATC+CGG | 0.484587 | 3.4:+4724532 | MS.gene51641:CDS |
| TTCTGCGGCAAATCAGTCTT+GGG | 0.487223 | 3.4:+4725158 | MS.gene51641:CDS |
| CTTGAAACAGCCTTGACTAC+TGG | 0.491839 | 3.4:+4727291 | MS.gene51641:CDS |
| TATGGATTTGGGAAGTGAAT+CGG | 0.504956 | 3.4:+4724291 | None:intergenic |
| GTCCAGGAAGCACTTGAAGA+AGG | 0.506986 | 3.4:+4725264 | MS.gene51641:CDS |
| AGAGGGGTTTATCTGGGTCT+GGG | 0.510213 | 3.4:+4724566 | MS.gene51641:CDS |
| ATTCTGCGGCAAATCAGTCT+TGG | 0.512363 | 3.4:+4725157 | MS.gene51641:CDS |
| TTCTTTATAACCTAGGGTGT+TGG | 0.512371 | 3.4:-4727337 | None:intergenic |
| CGTTACCTCCATCATAAACA+TGG | 0.514459 | 3.4:-4725044 | None:intergenic |
| GTGATGCAGAACTTGAAGGT+TGG | 0.516204 | 3.4:+4727432 | MS.gene51641:CDS |
| TTCGAAGAATTTAGTGAACT+CGG | 0.516442 | 3.4:+4724843 | MS.gene51641:CDS |
| GAAGAACAAAGCAGAAGAGT+TGG | 0.517816 | 3.4:+4727560 | MS.gene51641:CDS |
| TCCAAAGGGGCACCAAGAAA+GGG | 0.519135 | 3.4:+4724457 | MS.gene51641:CDS |
| GCAAGGCGTGCTTGCTACGA+AGG | 0.529878 | 3.4:+4727251 | MS.gene51641:CDS |
| CACGATGAAAATGGAATCAA+GGG | 0.532616 | 3.4:+4724334 | MS.gene51641:CDS |
| TCTGCGAAACCTGGAGGTGG+TGG | 0.534968 | 3.4:+4724904 | MS.gene51641:CDS |
| CCGAAGGTGAGGCATGAGAA+AGG | 0.536005 | 3.4:+4724799 | MS.gene51641:CDS |
| TCTCGAATCTGAATCCAAGC+TGG | 0.540931 | 3.4:-4724959 | None:intergenic |
| GGTGTTAAACCAGATCAAGA+AGG | 0.543409 | 3.4:+4724397 | MS.gene51641:CDS |
| GAAGAATCTGCCAACACCCT+AGG | 0.548150 | 3.4:+4727327 | MS.gene51641:CDS |
| CAAAAGGTTCAGCAAGGAAA+GGG | 0.549338 | 3.4:+4724868 | MS.gene51641:CDS |
| ACTAGTAATGGAAAACATAG+TGG | 0.551305 | 3.4:+4725015 | MS.gene51641:CDS |
| TGCAGAAGTCCAGAAATTCA+GGG | 0.553635 | 3.4:+4727011 | MS.gene51641:intron |
| AAGTGTAGCAGTGCATCTGC+TGG | 0.556258 | 3.4:+4727075 | MS.gene51641:CDS |
| AGGAAGCTGTGAATTCCAAA+GGG | 0.556817 | 3.4:+4724443 | MS.gene51641:CDS |
| TGTTGCTGAATTAGGTAGTG+AGG | 0.565053 | 3.4:+4724423 | MS.gene51641:CDS |
| TCAAAAGGTTCAGCAAGGAA+AGG | 0.565767 | 3.4:+4724867 | MS.gene51641:CDS |
| CTTCGGCTCACTAGCTGCAG+TGG | 0.566787 | 3.4:-4724782 | None:intergenic |
| AATTTGTATTCCTACTACCA+CGG | 0.566898 | 3.4:-4724822 | None:intergenic |
| GCATCACCTTAGCGATGGCT+AGG | 0.570346 | 3.4:-4727416 | None:intergenic |
| CACTGCAGCTAGTGAGCCGA+AGG | 0.570950 | 3.4:+4724783 | MS.gene51641:CDS |
| TTCACCAAGGAAGATGAAGC+TGG | 0.571532 | 3.4:+4725093 | MS.gene51641:CDS |
| GTGCTTCCTGGACAGCCTGA+AGG | 0.572548 | 3.4:-4725254 | None:intergenic |
| TAGGCAAAAGGTTGAAGCTG+AGG | 0.572695 | 3.4:+4727386 | MS.gene51641:CDS |
| GTGAGGCATGAGAAAGGCCG+TGG | 0.577436 | 3.4:+4724805 | MS.gene51641:CDS |
| TAGAATCTGTACTAGAACCC+CGG | 0.580227 | 3.4:-4724687 | None:intergenic |
| GAGGAAGCTGTGAATTCCAA+AGG | 0.581063 | 3.4:+4724442 | MS.gene51641:CDS |
| GGGGCACCAAGAAAGGGTGT+TGG | 0.581308 | 3.4:+4724463 | MS.gene51641:CDS |
| TCTGATGGGCATGCGATCCG+GGG | 0.581710 | 3.4:+4724670 | MS.gene51641:CDS |
| GAGTGCTGATGAATCCGGTA+AGG | 0.582886 | 3.4:+4724537 | MS.gene51641:CDS |
| GAATTTGAGTGAAAATCTGC+GGG | 0.583607 | 3.4:+4724594 | MS.gene51641:CDS |
| AGAAATGGAAGAGAATTAGG+AGG | 0.592844 | 3.4:+4724491 | MS.gene51641:CDS |
| AGGAAACTTACCAGTAGTCA+AGG | 0.594780 | 3.4:-4727301 | None:intergenic |
| AGGTTCAGCAAGGAAAGGGA+TGG | 0.596261 | 3.4:+4724872 | MS.gene51641:CDS |
| ACAGATTCTAGATATGCAGT+TGG | 0.598937 | 3.4:+4724700 | MS.gene51641:CDS |
| CTCCTGATAGACTCGATCAA+AGG | 0.598987 | 3.4:-4725231 | None:intergenic |
| AGCTCTGCGAAACCTGGAGG+TGG | 0.601277 | 3.4:+4724901 | MS.gene51641:CDS |
| CGAATTTGAGTGAAAATCTG+CGG | 0.603111 | 3.4:+4724593 | MS.gene51641:CDS |
| AGAAGTAGAGTACGAGATCG+AGG | 0.604863 | 3.4:+4727356 | MS.gene51641:CDS |
| TGGAAGAGTCAAGTTTGAGA+AGG | 0.606509 | 3.4:+4724924 | MS.gene51641:CDS |
| GATGCAGAACTTGAAGGTTG+GGG | 0.607398 | 3.4:+4727434 | MS.gene51641:CDS |
| GGATTTGGGAAGTGAATCGG+TGG | 0.608119 | 3.4:+4724294 | MS.gene51641:CDS |
| ACTGTCCGAAAATCAAGCAC+AGG | 0.613967 | 3.4:+4727494 | MS.gene51641:CDS |
| GTTACCTCCATCATAAACAT+GGG | 0.616232 | 3.4:-4725043 | None:intergenic |
| CAGCTAGTGAGCCGAAGGTG+AGG | 0.618013 | 3.4:+4724788 | MS.gene51641:CDS |
| ACTCGATATCTGAAACTCCA+AGG | 0.620943 | 3.4:-4727184 | None:intergenic |
| ATTCGGAGAATAGTGAGGAT+CGG | 0.621517 | 3.4:+4724746 | MS.gene51641:CDS |
| AGCAAGCTGGAGGAGTTGCA+AGG | 0.625840 | 3.4:+4727234 | MS.gene51641:CDS |
| TCGAGATCCAACTATAGGCA+AGG | 0.632294 | 3.4:+4724976 | MS.gene51641:CDS |
| TGAATACCTAGCCATCGCTA+AGG | 0.643417 | 3.4:+4727410 | MS.gene51641:CDS |
| GTTCTGCATCACCTTAGCGA+TGG | 0.647863 | 3.4:-4727421 | None:intergenic |
| ACAGTTATCCCAAAATTCTG+GGG | 0.661233 | 3.4:+4727710 | MS.gene51641:intron |
| TTACCTCCATCATAAACATG+GGG | 0.669072 | 3.4:-4725042 | None:intergenic |
| TCGGCTCAAAAGGTTCAGCA+AGG | 0.672328 | 3.4:+4724862 | MS.gene51641:CDS |
| GAGAGCTCTGCGAAACCTGG+AGG | 0.672720 | 3.4:+4724898 | MS.gene51641:CDS |
| GACTGATTCGGAGAATAGTG+AGG | 0.677186 | 3.4:+4724741 | MS.gene51641:CDS |
| TCTCAACAAGATCATAGATG+CGG | 0.693153 | 3.4:+4727518 | MS.gene51641:CDS |
| TACTAATGAACATTTCACCA+AGG | 0.694692 | 3.4:+4725080 | MS.gene51641:CDS |
| GTTTATGATGGAGGTAACGA+TGG | 0.695425 | 3.4:+4725048 | MS.gene51641:CDS |
| AGATCTACAGGAGAATTCTG+CGG | 0.721794 | 3.4:+4725143 | MS.gene51641:CDS |
| GGAAGCTGTGAATTCCAAAG+GGG | 0.746487 | 3.4:+4724444 | MS.gene51641:CDS |
| TACCTCCATCATAAACATGG+GGG | 0.749426 | 3.4:-4725041 | None:intergenic |
| AATTTGAGTGAAAATCTGCG+GGG | 0.860716 | 3.4:+4724595 | MS.gene51641:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATTAAAAATGAAATAATA+TGG | - | chr3.4:4726189-4726208 | None:intergenic | 10.0% |
| !! | ATAAAGTAATATGTATTATA+AGG | - | chr3.4:4725826-4725845 | None:intergenic | 10.0% |
| !! | AATACTTTCATAAAACATAA+TGG | - | chr3.4:4726339-4726358 | None:intergenic | 15.0% |
| !! | AGATTTACAATTTACATTAT+TGG | + | chr3.4:4727458-4727477 | MS.gene51641:CDS | 15.0% |
| !! | ATAAAATAAGAAGGTTTATT+AGG | - | chr3.4:4725558-4725577 | None:intergenic | 15.0% |
| !! | GTATGAATCATATATATAAT+TGG | + | chr3.4:4726677-4726696 | MS.gene51641:intron | 15.0% |
| !! | GTTAATTAGTTATGTTAATA+AGG | - | chr3.4:4725773-4725792 | None:intergenic | 15.0% |
| !!! | AGTTTTAAATATAGTATTGT+TGG | - | chr3.4:4725969-4725988 | None:intergenic | 15.0% |
| !!! | GTGATATGTTTTATTTTTAT+GGG | + | chr3.4:4725304-4725323 | MS.gene51641:intron | 15.0% |
| !!! | TGTGATATGTTTTATTTTTA+TGG | + | chr3.4:4725303-4725322 | MS.gene51641:intron | 15.0% |
| !!! | TTTTCATTTGCTTAAATTTT+TGG | + | chr3.4:4726804-4726823 | MS.gene51641:intron | 15.0% |
| !! | AATAAAACATATCACACAAT+AGG | - | chr3.4:4725299-4725318 | None:intergenic | 20.0% |
| !! | GAATTATATGTTTAGAGAAA+AGG | + | chr3.4:4726467-4726486 | MS.gene51641:intron | 20.0% |
| !! | TAACACGATATAAAATAAGA+AGG | - | chr3.4:4725567-4725586 | None:intergenic | 20.0% |
| !!! | ATCAGTGAAATATTTTGAAT+TGG | - | chr3.4:4725749-4725768 | None:intergenic | 20.0% |
| !!! | ATTTTGCATATTATTTCTTG+AGG | + | chr3.4:4726130-4726149 | MS.gene51641:intron | 20.0% |
| !!! | TATTTCATCTTTTCTACAAT+AGG | - | chr3.4:4726503-4726522 | None:intergenic | 20.0% |
| !!! | TTTCAATTTGATGGTAATTT+TGG | + | chr3.4:4724376-4724395 | MS.gene51641:CDS | 20.0% |
| ! | AAATTAGGGTTTCAATTTGA+TGG | + | chr3.4:4724367-4724386 | MS.gene51641:CDS | 25.0% |
| ! | AAGTCCAATATCTTTCTTAA+TGG | - | chr3.4:4726644-4726663 | None:intergenic | 25.0% |
| ! | AATAAGTGCAAAATAGCATA+TGG | - | chr3.4:4726786-4726805 | None:intergenic | 25.0% |
| ! | AATGAAATAATATGGCCAAA+TGG | - | chr3.4:4726181-4726200 | None:intergenic | 25.0% |
| ! | AGATGAAATAATCTTGTTCT+TGG | + | chr3.4:4726513-4726532 | MS.gene51641:intron | 25.0% |
| ! | ATATATGTTGCATTTACTCA+AGG | - | chr3.4:4725398-4725417 | None:intergenic | 25.0% |
| ! | ATTAAACAGAACCAAATACA+TGG | - | chr3.4:4725597-4725616 | None:intergenic | 25.0% |
| ! | CAAACCATTAAGAAAGATAT+TGG | + | chr3.4:4726637-4726656 | MS.gene51641:intron | 25.0% |
| ! | GTGGTTAATATAATGTCAAA+TGG | + | chr3.4:4726017-4726036 | MS.gene51641:intron | 25.0% |
| ! | TTTAGTACAGTTACTAGTAA+TGG | + | chr3.4:4725003-4725022 | MS.gene51641:CDS | 25.0% |
| !! | AACCTAGTATATAATTTGTC+TGG | + | chr3.4:4725515-4725534 | MS.gene51641:intron | 25.0% |
| !! | ATTGGACTTGAATGATTTTT+AGG | + | chr3.4:4726655-4726674 | MS.gene51641:intron | 25.0% |
| !! | TGATGTTAATCTTGTTCTTT+TGG | + | chr3.4:4727676-4727695 | MS.gene51641:intron | 25.0% |
| !!! | AAAGTATTGAACTGAATGTT+GGG | + | chr3.4:4726351-4726370 | MS.gene51641:intron | 25.0% |
| AAACATATCACACAATAGGA+CGG | - | chr3.4:4725295-4725314 | None:intergenic | 30.0% | |
| AATTAGGAGGAATGTTGTTA+GGG | + | chr3.4:4724504-4724523 | MS.gene51641:CDS | 30.0% | |
| AATTTGTATTCCTACTACCA+CGG | - | chr3.4:4724825-4724844 | None:intergenic | 30.0% | |
| ACTCTACTTCTTTATAACCT+AGG | - | chr3.4:4727347-4727366 | None:intergenic | 30.0% | |
| AGATTAACATCATGAACTGT+AGG | - | chr3.4:4727668-4727687 | None:intergenic | 30.0% | |
| AGCCAGACAAATTATATACT+AGG | - | chr3.4:4725520-4725539 | None:intergenic | 30.0% | |
| ATATGTTTAGAGAAAAGGCA+GGG | + | chr3.4:4726472-4726491 | MS.gene51641:intron | 30.0% | |
| CTCTACTTCTTTATAACCTA+GGG | - | chr3.4:4727346-4727365 | None:intergenic | 30.0% | |
| GTGTTAAGGAAAAAAACGAT+GGG | + | chr3.4:4724617-4724636 | MS.gene51641:CDS | 30.0% | |
| TACAAATTGGTTATCAGCAA+TGG | - | chr3.4:4726983-4727002 | None:intergenic | 30.0% | |
| TACTAATGAACATTTCACCA+AGG | + | chr3.4:4725080-4725099 | MS.gene51641:CDS | 30.0% | |
| TATATGTTTAGAGAAAAGGC+AGG | + | chr3.4:4726471-4726490 | MS.gene51641:intron | 30.0% | |
| TCTGTTTAATCAGTTTGGTT+TGG | + | chr3.4:4725607-4725626 | MS.gene51641:intron | 30.0% | |
| TGAAATAATCTTGTTCTTGG+TGG | + | chr3.4:4726516-4726535 | MS.gene51641:intron | 30.0% | |
| TGAAGAAATGGAAGAGAATT+AGG | + | chr3.4:4724488-4724507 | MS.gene51641:CDS | 30.0% | |
| TGGTGATAGTTTAGTAATTG+AGG | + | chr3.4:4727593-4727612 | MS.gene51641:CDS | 30.0% | |
| TTACTCAAGGATTATAACAC+CGG | - | chr3.4:4725385-4725404 | None:intergenic | 30.0% | |
| TTCGAAGAATTTAGTGAACT+CGG | + | chr3.4:4724843-4724862 | MS.gene51641:CDS | 30.0% | |
| TTGTCAACAAACTGATGATA+AGG | - | chr3.4:4725423-4725442 | None:intergenic | 30.0% | |
| ! | ACTAGTAATGGAAAACATAG+TGG | + | chr3.4:4725015-4725034 | MS.gene51641:CDS | 30.0% |
| ! | GAAACAACATGTAAACCTTT+TGG | + | chr3.4:4727209-4727228 | MS.gene51641:CDS | 30.0% |
| ! | TCTTAATGGTTTGACTTTAC+TGG | - | chr3.4:4726630-4726649 | None:intergenic | 30.0% |
| ! | TTATAAGGTATCTGTGAGTA+AGG | - | chr3.4:4725811-4725830 | None:intergenic | 30.0% |
| ! | TTTAGAGCCTTAAGTTATGA+TGG | + | chr3.4:4725875-4725894 | MS.gene51641:intron | 30.0% |
| !! | ATCATCAGTTTGTTGACAAT+TGG | + | chr3.4:4725424-4725443 | MS.gene51641:intron | 30.0% |
| !! | GAAAGTATTGAACTGAATGT+TGG | + | chr3.4:4726350-4726369 | MS.gene51641:intron | 30.0% |
| !! | TTGGTTCTGTTTAATCAGTT+TGG | + | chr3.4:4725602-4725621 | MS.gene51641:intron | 30.0% |
| !!! | ATGAAGTTCTGTCTTTTTTC+TGG | + | chr3.4:4726931-4726950 | MS.gene51641:intron | 30.0% |
| !!! | TTGTTCTCACTTTTTTCTTC+AGG | - | chr3.4:4725189-4725208 | None:intergenic | 30.0% |
| AATTGAGATTGTTGTGTTGC+CGG | + | chr3.4:4725363-4725382 | MS.gene51641:intron | 35.0% | |
| AATTTGAGTGAAAATCTGCG+GGG | + | chr3.4:4724595-4724614 | MS.gene51641:CDS | 35.0% | |
| ACAGAACCAAATACATGGTT+TGG | - | chr3.4:4725592-4725611 | None:intergenic | 35.0% | |
| ACAGATTCTAGATATGCAGT+TGG | + | chr3.4:4724700-4724719 | MS.gene51641:CDS | 35.0% | |
| ACAGTTATCCCAAAATTCTG+GGG | + | chr3.4:4727710-4727729 | MS.gene51641:intron | 35.0% | |
| ACATGACTTGATCCAACAAT+AGG | + | chr3.4:4726707-4726726 | MS.gene51641:intron | 35.0% | |
| AGAAATGGAAGAGAATTAGG+AGG | + | chr3.4:4724491-4724510 | MS.gene51641:CDS | 35.0% | |
| AGAAGGTTTATTAGGCAGTT+AGG | - | chr3.4:4725550-4725569 | None:intergenic | 35.0% | |
| AGATTATATTGCCACCTTAC+AGG | - | chr3.4:4725682-4725701 | None:intergenic | 35.0% | |
| AGGAAACAATGATGCAAAGT+AGG | + | chr3.4:4726727-4726746 | MS.gene51641:intron | 35.0% | |
| ATCATAAGATCCAAGTGAGA+TGG | + | chr3.4:4726247-4726266 | MS.gene51641:intron | 35.0% | |
| ATCGTAGATGTAGATCAGAT+GGG | + | chr3.4:4726574-4726593 | MS.gene51641:intron | 35.0% | |
| CAACAATCTCAATTGCAGAT+TGG | - | chr3.4:4725357-4725376 | None:intergenic | 35.0% | |
| CACAAATGAGAATACTGCAT+TGG | + | chr3.4:4726408-4726427 | MS.gene51641:intron | 35.0% | |
| CACAGTTATCCCAAAATTCT+GGG | + | chr3.4:4727709-4727728 | MS.gene51641:intron | 35.0% | |
| CACGATGAAAATGGAATCAA+GGG | + | chr3.4:4724334-4724353 | MS.gene51641:CDS | 35.0% | |
| CATGTAGAGAAATAAAGTGC+TGG | - | chr3.4:4726068-4726087 | None:intergenic | 35.0% | |
| CGAATTTGAGTGAAAATCTG+CGG | + | chr3.4:4724593-4724612 | MS.gene51641:CDS | 35.0% | |
| GAAGAGTTGGAAAAATACTG+TGG | + | chr3.4:4727573-4727592 | MS.gene51641:CDS | 35.0% | |
| GAAGGAATTGTTGCTGAATT+AGG | + | chr3.4:4724415-4724434 | MS.gene51641:CDS | 35.0% | |
| GAAGGTTTATTAGGCAGTTA+GGG | - | chr3.4:4725549-4725568 | None:intergenic | 35.0% | |
| GAAGTGAATCACGATGAAAA+TGG | + | chr3.4:4724325-4724344 | MS.gene51641:CDS | 35.0% | |
| GAATTAGGAGGAATGTTGTT+AGG | + | chr3.4:4724503-4724522 | MS.gene51641:CDS | 35.0% | |
| GAATTTGAGTGAAAATCTGC+GGG | + | chr3.4:4724594-4724613 | MS.gene51641:CDS | 35.0% | |
| GCATCATTGTTTCCTATTGT+TGG | - | chr3.4:4726722-4726741 | None:intergenic | 35.0% | |
| GGAAAATTCTATTTCCAGCT+TGG | + | chr3.4:4724945-4724964 | MS.gene51641:CDS | 35.0% | |
| GGTGTTAAGGAAAAAAACGA+TGG | + | chr3.4:4724616-4724635 | MS.gene51641:CDS | 35.0% | |
| GTGTAGACCATCATAACTTA+AGG | - | chr3.4:4725885-4725904 | None:intergenic | 35.0% | |
| GTTAAGCCAAACCATGTATT+TGG | + | chr3.4:4725583-4725602 | MS.gene51641:intron | 35.0% | |
| GTTACCTCCATCATAAACAT+GGG | - | chr3.4:4725046-4725065 | None:intergenic | 35.0% | |
| GTTGGAATGGATCAATGTTT+CGG | + | chr3.4:4726269-4726288 | MS.gene51641:intron | 35.0% | |
| TATCAATCTCCCTGAATTTC+TGG | - | chr3.4:4727023-4727042 | None:intergenic | 35.0% | |
| TATGCCAATAAACTACTTGC+AGG | - | chr3.4:4726903-4726922 | None:intergenic | 35.0% | |
| TCACAGTTATCCCAAAATTC+TGG | + | chr3.4:4727708-4727727 | MS.gene51641:intron | 35.0% | |
| TCACGATGAAAATGGAATCA+AGG | + | chr3.4:4724333-4724352 | MS.gene51641:CDS | 35.0% | |
| TCATTTGTACATGACTTGAG+AGG | + | chr3.4:4726154-4726173 | MS.gene51641:intron | 35.0% | |
| TCTCAACAAGATCATAGATG+CGG | + | chr3.4:4727518-4727537 | MS.gene51641:CDS | 35.0% | |
| TGGAAGAAAAGAATCGAGTA+TGG | + | chr3.4:4726951-4726970 | MS.gene51641:intron | 35.0% | |
| TTACCTCCATCATAAACATG+GGG | - | chr3.4:4725045-4725064 | None:intergenic | 35.0% | |
| TTCTTTATAACCTAGGGTGT+TGG | - | chr3.4:4727340-4727359 | None:intergenic | 35.0% | |
| TTGGAATGGATCAATGTTTC+GGG | + | chr3.4:4726270-4726289 | MS.gene51641:intron | 35.0% | |
| ! | AAGGGTTCTGATGAGAAATT+AGG | + | chr3.4:4724352-4724371 | MS.gene51641:CDS | 35.0% |
| ! | AGGGTTCTGATGAGAAATTA+GGG | + | chr3.4:4724353-4724372 | MS.gene51641:CDS | 35.0% |
| ! | ATAATCTTGTTCTTGGTGGT+TGG | + | chr3.4:4726520-4726539 | MS.gene51641:intron | 35.0% |
| ! | GGAATGTAGTGTTTTCTGAT+GGG | + | chr3.4:4724656-4724675 | MS.gene51641:CDS | 35.0% |
| ! | TGACTAGCAGTTGCAAATTT+TGG | + | chr3.4:4725709-4725728 | MS.gene51641:intron | 35.0% |
| !! | AATCTCATGCATTGACTTGA+TGG | + | chr3.4:4726204-4726223 | MS.gene51641:intron | 35.0% |
| !! | ATCTCATGCATTGACTTGAT+GGG | + | chr3.4:4726205-4726224 | MS.gene51641:intron | 35.0% |
| !! | TTTTGAAGAGGGGTTTATCT+GGG | + | chr3.4:4724560-4724579 | MS.gene51641:CDS | 35.0% |
| !!! | TTGGATCTGGTTTTGTTGTT+GGG | + | chr3.4:4724719-4724738 | MS.gene51641:CDS | 35.0% |
| !!! | TTTTGTTGTTGGGACTGATT+CGG | + | chr3.4:4724729-4724748 | MS.gene51641:CDS | 35.0% |
| AAAGACACCTTGCCTATAGT+TGG | - | chr3.4:4724986-4725005 | None:intergenic | 40.0% | |
| AAGGAAGATGAAGCTGGTTA+TGG | + | chr3.4:4725099-4725118 | MS.gene51641:CDS | 40.0% | |
| AATTGCAGATTGGCAACAAG+AGG | - | chr3.4:4725347-4725366 | None:intergenic | 40.0% | |
| AGATCTACAGGAGAATTCTG+CGG | + | chr3.4:4725143-4725162 | MS.gene51641:CDS | 40.0% | |
| AGGAAACTTACCAGTAGTCA+AGG | - | chr3.4:4727304-4727323 | None:intergenic | 40.0% | |
| AGGAAGCTGTGAATTCCAAA+GGG | + | chr3.4:4724443-4724462 | MS.gene51641:CDS | 40.0% | |
| ATAACCAGCTTCATCTTCCT+TGG | - | chr3.4:4725100-4725119 | None:intergenic | 40.0% | |
| ATCCTTTGATCGAGTCTATC+AGG | + | chr3.4:4725229-4725248 | MS.gene51641:CDS | 40.0% | |
| ATTCGGAGAATAGTGAGGAT+CGG | + | chr3.4:4724746-4724765 | MS.gene51641:CDS | 40.0% | |
| CAAAAACACCATCTAGTAGC+AGG | - | chr3.4:4725646-4725665 | None:intergenic | 40.0% | |
| CAAAAGGTTCAGCAAGGAAA+GGG | + | chr3.4:4724868-4724887 | MS.gene51641:CDS | 40.0% | |
| CAGATTCGAGATCCAACTAT+AGG | + | chr3.4:4724971-4724990 | MS.gene51641:CDS | 40.0% | |
| CAGCACAGATCTAAATATGC+AGG | - | chr3.4:4725997-4726016 | None:intergenic | 40.0% | |
| CATATTTAGATCTGTGCTGG+TGG | + | chr3.4:4725998-4726017 | MS.gene51641:intron | 40.0% | |
| CATCGTAGATGTAGATCAGA+TGG | + | chr3.4:4726573-4726592 | MS.gene51641:intron | 40.0% | |
| CGTTACCTCCATCATAAACA+TGG | - | chr3.4:4725047-4725066 | None:intergenic | 40.0% | |
| CTGCATATTTAGATCTGTGC+TGG | + | chr3.4:4725995-4726014 | MS.gene51641:intron | 40.0% | |
| GAAGAACAAAGCAGAAGAGT+TGG | + | chr3.4:4727560-4727579 | MS.gene51641:CDS | 40.0% | |
| GCAACAATTCCTTCTTGATC+TGG | - | chr3.4:4724409-4724428 | None:intergenic | 40.0% | |
| GGTGTTAAACCAGATCAAGA+AGG | + | chr3.4:4724397-4724416 | MS.gene51641:CDS | 40.0% | |
| TAAGATCCAAGTGAGATGGT+TGG | + | chr3.4:4726251-4726270 | MS.gene51641:intron | 40.0% | |
| TAAGGTGATGCAGAACTTGA+AGG | + | chr3.4:4727428-4727447 | MS.gene51641:CDS | 40.0% | |
| TACCTCCATCATAAACATGG+GGG | - | chr3.4:4725044-4725063 | None:intergenic | 40.0% | |
| TAGAATCTGTACTAGAACCC+CGG | - | chr3.4:4724690-4724709 | None:intergenic | 40.0% | |
| TATGATGGTCTACACTCTAC+AGG | + | chr3.4:4725890-4725909 | MS.gene51641:intron | 40.0% | |
| TCAAAAGGTTCAGCAAGGAA+AGG | + | chr3.4:4724867-4724886 | MS.gene51641:CDS | 40.0% | |
| TCGTAGATGTAGATCAGATG+GGG | + | chr3.4:4726575-4726594 | MS.gene51641:intron | 40.0% | |
| TCTAGATATGCAGTTGGATC+TGG | + | chr3.4:4724706-4724725 | MS.gene51641:CDS | 40.0% | |
| TCTTCCTCAATGTCAAGCAA+TGG | - | chr3.4:4726607-4726626 | None:intergenic | 40.0% | |
| TGATGCAGAACTTGAAGGTT+GGG | + | chr3.4:4727433-4727452 | MS.gene51641:CDS | 40.0% | |
| TGCAGAAGTCCAGAAATTCA+GGG | + | chr3.4:4727011-4727030 | MS.gene51641:intron | 40.0% | |
| TGGAAGAGTCAAGTTTGAGA+AGG | + | chr3.4:4724924-4724943 | MS.gene51641:CDS | 40.0% | |
| TGGTGAAGATGAAGATCTAC+AGG | + | chr3.4:4725131-4725150 | MS.gene51641:CDS | 40.0% | |
| TGTCAATTAAGCTGCTAGCA+AGG | + | chr3.4:4725472-4725491 | MS.gene51641:intron | 40.0% | |
| TGTTGCTGAATTAGGTAGTG+AGG | + | chr3.4:4724423-4724442 | MS.gene51641:CDS | 40.0% | |
| TTGCAGAAGTCCAGAAATTC+AGG | + | chr3.4:4727010-4727029 | MS.gene51641:intron | 40.0% | |
| TTTAGTGAACTCGGCTCAAA+AGG | + | chr3.4:4724852-4724871 | MS.gene51641:CDS | 40.0% | |
| ! | ACGAGATCGAGGATCTTTTT+AGG | + | chr3.4:4727367-4727386 | MS.gene51641:CDS | 40.0% |
| ! | ACTCGATATCTGAAACTCCA+AGG | - | chr3.4:4727187-4727206 | None:intergenic | 40.0% |
| ! | CACAACAACCCCAGAATTTT+GGG | - | chr3.4:4727721-4727740 | None:intergenic | 40.0% |
| ! | CTGCAAGAGCACATACAAAT+TGG | - | chr3.4:4726996-4727015 | None:intergenic | 40.0% |
| ! | GAGAACCTGTGCTTGATTTT+CGG | - | chr3.4:4727502-4727521 | None:intergenic | 40.0% |
| ! | GCTGCAGAAAAGAGTATGTA+AGG | + | chr3.4:4727626-4727645 | MS.gene51641:intron | 40.0% |
| ! | GGGAATGTAGTGTTTTCTGA+TGG | + | chr3.4:4724655-4724674 | MS.gene51641:CDS | 40.0% |
| ! | GTGTTGGCAGATTCTTCTTT+AGG | - | chr3.4:4727324-4727343 | None:intergenic | 40.0% |
| ! | GTTTATGATGGAGGTAACGA+TGG | + | chr3.4:4725048-4725067 | MS.gene51641:CDS | 40.0% |
| !! | AAACCTTTTGGAAAGCAAGC+TGG | + | chr3.4:4727221-4727240 | MS.gene51641:CDS | 40.0% |
| !! | AATTCGAGTGCTGATGAATC+CGG | + | chr3.4:4724532-4724551 | MS.gene51641:CDS | 40.0% |
| !! | CGAGGATCTTTTTAGGCAAA+AGG | + | chr3.4:4727374-4727393 | MS.gene51641:CDS | 40.0% |
| !! | TCTCATGCATTGACTTGATG+GGG | + | chr3.4:4726206-4726225 | MS.gene51641:intron | 40.0% |
| !!! | AATCCGGTAAGGTTTTGAAG+AGG | + | chr3.4:4724548-4724567 | MS.gene51641:CDS | 40.0% |
| !!! | ATCCGGTAAGGTTTTGAAGA+GGG | + | chr3.4:4724549-4724568 | MS.gene51641:CDS | 40.0% |
| !!! | GTTGGATCTGGTTTTGTTGT+TGG | + | chr3.4:4724718-4724737 | MS.gene51641:CDS | 40.0% |
| !!! | GTTTTGAAGAGGGGTTTATC+TGG | + | chr3.4:4724559-4724578 | MS.gene51641:CDS | 40.0% |
| AACCCCCATGTTTATGATGG+AGG | + | chr3.4:4725039-4725058 | MS.gene51641:CDS | 45.0% | |
| AACCTTCTTCAAGTGCTTCC+TGG | - | chr3.4:4725269-4725288 | None:intergenic | 45.0% | |
| ACCCCTCTTCAAAACCTTAC+CGG | - | chr3.4:4724554-4724573 | None:intergenic | 45.0% | |
| ACTGTCCGAAAATCAAGCAC+AGG | + | chr3.4:4727494-4727513 | MS.gene51641:CDS | 45.0% | |
| AGAAGTAGAGTACGAGATCG+AGG | + | chr3.4:4727356-4727375 | MS.gene51641:CDS | 45.0% | |
| ATTCTGCGGCAAATCAGTCT+TGG | + | chr3.4:4725157-4725176 | MS.gene51641:CDS | 45.0% | |
| CAAATGGAGAATGAGCACCT+TGG | + | chr3.4:4726033-4726052 | MS.gene51641:intron | 45.0% | |
| CACTTAACTGAGTCGTCTTC+TGG | - | chr3.4:4727060-4727079 | None:intergenic | 45.0% | |
| CATGACTTGAGAGGTCCATT+TGG | + | chr3.4:4726163-4726182 | MS.gene51641:intron | 45.0% | |
| CGTAGATGTAGATCAGATGG+GGG | + | chr3.4:4726576-4726595 | MS.gene51641:intron | 45.0% | |
| CTCCTGATAGACTCGATCAA+AGG | - | chr3.4:4725234-4725253 | None:intergenic | 45.0% | |
| CTTGAAACAGCCTTGACTAC+TGG | + | chr3.4:4727291-4727310 | MS.gene51641:CDS | 45.0% | |
| GAGGAAGCTGTGAATTCCAA+AGG | + | chr3.4:4724442-4724461 | MS.gene51641:CDS | 45.0% | |
| GATCATAGATGCGGAGAGTA+AGG | + | chr3.4:4727527-4727546 | MS.gene51641:CDS | 45.0% | |
| GATCTTCAGCACTTGTAGAC+TGG | - | chr3.4:4725212-4725231 | None:intergenic | 45.0% | |
| GATGCAGAACTTGAAGGTTG+GGG | + | chr3.4:4727434-4727453 | MS.gene51641:CDS | 45.0% | |
| GCATAAAGTTGCTGCCTGTA+AGG | + | chr3.4:4725665-4725684 | MS.gene51641:intron | 45.0% | |
| GCTGCCTGCAAGTAGTTTAT+TGG | + | chr3.4:4726896-4726915 | MS.gene51641:intron | 45.0% | |
| GCTGGTTATGGCAACGAAAA+TGG | + | chr3.4:4725111-4725130 | MS.gene51641:CDS | 45.0% | |
| GGAACTTGAAGCAGCTTGAT+TGG | - | chr3.4:4727166-4727185 | None:intergenic | 45.0% | |
| GGAAGCTGTGAATTCCAAAG+GGG | + | chr3.4:4724444-4724463 | MS.gene51641:CDS | 45.0% | |
| GGTAACCCCCATGTTTATGA+TGG | + | chr3.4:4725036-4725055 | MS.gene51641:CDS | 45.0% | |
| GGTATCACTGCTGTTGATCT+TGG | + | chr3.4:4727096-4727115 | MS.gene51641:CDS | 45.0% | |
| GTGATGCAGAACTTGAAGGT+TGG | + | chr3.4:4727432-4727451 | MS.gene51641:CDS | 45.0% | |
| TAAAGTTGCTGCCTGTAAGG+TGG | + | chr3.4:4725668-4725687 | MS.gene51641:intron | 45.0% | |
| TAGGCAAAAGGTTGAAGCTG+AGG | + | chr3.4:4727386-4727405 | MS.gene51641:CDS | 45.0% | |
| TCCAAGTGAGATGGTTGGAA+TGG | + | chr3.4:4726256-4726275 | MS.gene51641:intron | 45.0% | |
| TCCATTCCAACCATCTCACT+TGG | - | chr3.4:4726260-4726279 | None:intergenic | 45.0% | |
| TCGAGATCCAACTATAGGCA+AGG | + | chr3.4:4724976-4724995 | MS.gene51641:CDS | 45.0% | |
| TCTAGTAGCAGGTGAGTTCA+AGG | - | chr3.4:4725635-4725654 | None:intergenic | 45.0% | |
| TCTCGAATCTGAATCCAAGC+TGG | - | chr3.4:4724962-4724981 | None:intergenic | 45.0% | |
| TGAACTCACCTGCTACTAGA+TGG | + | chr3.4:4725635-4725654 | MS.gene51641:intron | 45.0% | |
| TGAATACCTAGCCATCGCTA+AGG | + | chr3.4:4727410-4727429 | MS.gene51641:CDS | 45.0% | |
| TGACTTGATGGGGAGATAGA+GGG | + | chr3.4:4726216-4726235 | MS.gene51641:intron | 45.0% | |
| TGGTCCATTGCTTGACATTG+AGG | + | chr3.4:4726600-4726619 | MS.gene51641:intron | 45.0% | |
| TGTTTAGAGAAAAGGCAGGG+TGG | + | chr3.4:4726475-4726494 | MS.gene51641:intron | 45.0% | |
| TTCAACCCAACACCCTTTCT+TGG | - | chr3.4:4724472-4724491 | None:intergenic | 45.0% | |
| TTCACCAAGGAAGATGAAGC+TGG | + | chr3.4:4725093-4725112 | MS.gene51641:CDS | 45.0% | |
| TTCTGCGGCAAATCAGTCTT+GGG | + | chr3.4:4725158-4725177 | MS.gene51641:CDS | 45.0% | |
| ! | AGTGCTGGAGAAACTTTCCA+AGG | - | chr3.4:4726053-4726072 | None:intergenic | 45.0% |
| ! | GCACAACAACCCCAGAATTT+TGG | - | chr3.4:4727722-4727741 | None:intergenic | 45.0% |
| ! | TCAAGCTGCTTCAAGTTCCT+TGG | + | chr3.4:4727167-4727186 | MS.gene51641:CDS | 45.0% |
| ! | TGAAAATCTGCGGGGTGTTA+AGG | + | chr3.4:4724603-4724622 | MS.gene51641:CDS | 45.0% |
| ! | TGCTTGCTACGAAGGATTCT+AGG | + | chr3.4:4727259-4727278 | MS.gene51641:CDS | 45.0% |
| ! | TTGACTTGATGGGGAGATAG+AGG | + | chr3.4:4726215-4726234 | MS.gene51641:intron | 45.0% |
| !! | AGGGTGTTGGGTTGAAGAAA+TGG | + | chr3.4:4724476-4724495 | MS.gene51641:CDS | 45.0% |
| !! | GACTGATTCGGAGAATAGTG+AGG | + | chr3.4:4724741-4724760 | MS.gene51641:CDS | 45.0% |
| !!! | TCCGGTAAGGTTTTGAAGAG+GGG | + | chr3.4:4724550-4724569 | MS.gene51641:CDS | 45.0% |
| AAGAGGGGTTTATCTGGGTC+TGG | + | chr3.4:4724565-4724584 | MS.gene51641:CDS | 50.0% | |
| AAGTGTAGCAGTGCATCTGC+TGG | + | chr3.4:4727075-4727094 | MS.gene51641:CDS | 50.0% | |
| ACTTGATGGGGAGATAGAGG+GGG | + | chr3.4:4726218-4726237 | MS.gene51641:intron | 50.0% | |
| AGAGGGGTTTATCTGGGTCT+GGG | + | chr3.4:4724566-4724585 | MS.gene51641:CDS | 50.0% | |
| AGGTTCAGCAAGGAAAGGGA+TGG | + | chr3.4:4724872-4724891 | MS.gene51641:CDS | 50.0% | |
| ATGAGAAAGGCCGTGGTAGT+AGG | + | chr3.4:4724812-4724831 | MS.gene51641:CDS | 50.0% | |
| ATTGAGAGCTCTGCGAAACC+TGG | + | chr3.4:4724895-4724914 | MS.gene51641:CDS | 50.0% | |
| CCTTTCTCATGCCTCACCTT+CGG | - | chr3.4:4724802-4724821 | None:intergenic | 50.0% | |
| GAAGAATCTGCCAACACCCT+AGG | + | chr3.4:4727327-4727346 | MS.gene51641:CDS | 50.0% | |
| GACTTGATGGGGAGATAGAG+GGG | + | chr3.4:4726217-4726236 | MS.gene51641:intron | 50.0% | |
| GATGTAGATCAGATGGGGGA+TGG | + | chr3.4:4726580-4726599 | MS.gene51641:intron | 50.0% | |
| GGATTTGGGAAGTGAATCGG+TGG | + | chr3.4:4724294-4724313 | MS.gene51641:CDS | 50.0% | |
| GTTCTGCATCACCTTAGCGA+TGG | - | chr3.4:4727424-4727443 | None:intergenic | 50.0% | |
| TCGGCTCAAAAGGTTCAGCA+AGG | + | chr3.4:4724862-4724881 | MS.gene51641:CDS | 50.0% | |
| ! | CCTCCAGCTTGCTTTCCAAA+AGG | - | chr3.4:4727227-4727246 | None:intergenic | 50.0% |
| ! | TTTCTGATGGGCATGCGATC+CGG | + | chr3.4:4724668-4724687 | MS.gene51641:CDS | 50.0% |
| !! | CCTTTTGGAAAGCAAGCTGG+AGG | + | chr3.4:4727224-4727243 | MS.gene51641:CDS | 50.0% |
| !! | GAGTGCTGATGAATCCGGTA+AGG | + | chr3.4:4724537-4724556 | MS.gene51641:CDS | 50.0% |
| !! | GTCCAGGAAGCACTTGAAGA+AGG | + | chr3.4:4725264-4725283 | MS.gene51641:CDS | 50.0% |
| !! | TCCAAAGGGGCACCAAGAAA+GGG | + | chr3.4:4724457-4724476 | MS.gene51641:CDS | 50.0% |
| !! | TTCCAAAGGGGCACCAAGAA+AGG | + | chr3.4:4724456-4724475 | MS.gene51641:CDS | 50.0% |
| AGCAAGCTGGAGGAGTTGCA+AGG | + | chr3.4:4727234-4727253 | MS.gene51641:CDS | 55.0% | |
| ATGGGTCTTCGAGCGCGTTT+GGG | + | chr3.4:4724635-4724654 | MS.gene51641:CDS | 55.0% | |
| CCGAAGGTGAGGCATGAGAA+AGG | + | chr3.4:4724799-4724818 | MS.gene51641:CDS | 55.0% | |
| CGAGTCTATCAGGAGCCTTC+AGG | + | chr3.4:4725239-4725258 | MS.gene51641:CDS | 55.0% | |
| GCATCACCTTAGCGATGGCT+AGG | - | chr3.4:4727419-4727438 | None:intergenic | 55.0% | |
| TTGACTCTTCCACCACCTCC+AGG | - | chr3.4:4724916-4724935 | None:intergenic | 55.0% | |
| ! | TTCTGATGGGCATGCGATCC+GGG | + | chr3.4:4724669-4724688 | MS.gene51641:CDS | 55.0% |
| !! | ACCCTTTCTTGGTGCCCCTT+TGG | - | chr3.4:4724461-4724480 | None:intergenic | 55.0% |
| !! | GGGCACCAAGAAAGGGTGTT+GGG | + | chr3.4:4724464-4724483 | MS.gene51641:CDS | 55.0% |
| AGCTCTGCGAAACCTGGAGG+TGG | + | chr3.4:4724901-4724920 | MS.gene51641:CDS | 60.0% | |
| CACTGCAGCTAGTGAGCCGA+AGG | + | chr3.4:4724783-4724802 | MS.gene51641:CDS | 60.0% | |
| CAGCTAGTGAGCCGAAGGTG+AGG | + | chr3.4:4724788-4724807 | MS.gene51641:CDS | 60.0% | |
| CTTCGGCTCACTAGCTGCAG+TGG | - | chr3.4:4724785-4724804 | None:intergenic | 60.0% | |
| GAGAGCTCTGCGAAACCTGG+AGG | + | chr3.4:4724898-4724917 | MS.gene51641:CDS | 60.0% | |
| GATGGGTCTTCGAGCGCGTT+TGG | + | chr3.4:4724634-4724653 | MS.gene51641:CDS | 60.0% | |
| GTGAGGCATGAGAAAGGCCG+TGG | + | chr3.4:4724805-4724824 | MS.gene51641:CDS | 60.0% | |
| GTGCTTCCTGGACAGCCTGA+AGG | - | chr3.4:4725257-4725276 | None:intergenic | 60.0% | |
| TCTGCGAAACCTGGAGGTGG+TGG | + | chr3.4:4724904-4724923 | MS.gene51641:CDS | 60.0% | |
| ! | GCAAGGCGTGCTTGCTACGA+AGG | + | chr3.4:4727251-4727270 | MS.gene51641:CDS | 60.0% |
| ! | GGGGCACCAAGAAAGGGTGT+TGG | + | chr3.4:4724463-4724482 | MS.gene51641:CDS | 60.0% |
| ! | TCTGATGGGCATGCGATCCG+GGG | + | chr3.4:4724670-4724689 | MS.gene51641:CDS | 60.0% |
| CAGGAGCCTTCAGGCTGTCC+AGG | + | chr3.4:4725248-4725267 | MS.gene51641:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 4724292 | 4727749 | 4724292 | ID=MS.gene51641 |
| chr3.4 | mRNA | 4724292 | 4727749 | 4724292 | ID=MS.gene51641.t1;Parent=MS.gene51641 |
| chr3.4 | exon | 4724292 | 4725285 | 4724292 | ID=MS.gene51641.t1.exon1;Parent=MS.gene51641.t1 |
| chr3.4 | CDS | 4724292 | 4725285 | 4724292 | ID=cds.MS.gene51641.t1;Parent=MS.gene51641.t1 |
| chr3.4 | exon | 4727016 | 4727638 | 4727016 | ID=MS.gene51641.t1.exon2;Parent=MS.gene51641.t1 |
| chr3.4 | CDS | 4727016 | 4727638 | 4727016 | ID=cds.MS.gene51641.t1;Parent=MS.gene51641.t1 |
| chr3.4 | exon | 4727714 | 4727749 | 4727714 | ID=MS.gene51641.t1.exon3;Parent=MS.gene51641.t1 |
| chr3.4 | CDS | 4727714 | 4727749 | 4727714 | ID=cds.MS.gene51641.t1;Parent=MS.gene51641.t1 |
| Gene Sequence |
| Protein sequence |
