Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52794.t1 | XP_024634993.1 | 95.5 | 331 | 14 | 1 | 1 | 331 | 1 | 330 | 7.00E-180 | 639.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52794.t1 | Q9SGS2 | 61.4 | 308 | 111 | 4 | 18 | 322 | 25 | 327 | 4.2e-101 | 369.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52794.t1 | A0A072V3N9 | 94.9 | 331 | 13 | 1 | 1 | 331 | 1 | 327 | 9.5e-179 | 635.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene52794.t1 | TR | ARID |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene52794 | 0.839904 | 1.20E-57 | -1.69E-46 |
| MS.gene049222 | MS.gene52794 | 0.850832 | 1.32E-60 | -1.69E-46 |
| MS.gene049232 | MS.gene52794 | 0.830908 | 2.25E-55 | -1.69E-46 |
| MS.gene049285 | MS.gene52794 | 0.818326 | 2.08E-52 | -1.69E-46 |
| MS.gene049320 | MS.gene52794 | 0.832481 | 9.23E-56 | -1.69E-46 |
| MS.gene05010 | MS.gene52794 | 0.811382 | 7.20E-51 | -1.69E-46 |
| MS.gene050163 | MS.gene52794 | 0.823134 | 1.63E-53 | -1.69E-46 |
| MS.gene050165 | MS.gene52794 | 0.824633 | 7.26E-54 | -1.69E-46 |
| MS.gene050216 | MS.gene52794 | 0.806303 | 8.78E-50 | -1.69E-46 |
| MS.gene050323 | MS.gene52794 | 0.803515 | 3.36E-49 | -1.69E-46 |
| MS.gene050333 | MS.gene52794 | 0.800077 | 1.71E-48 | -1.69E-46 |
| MS.gene050504 | MS.gene52794 | 0.836128 | 1.12E-56 | -1.69E-46 |
| MS.gene050518 | MS.gene52794 | 0.806294 | 8.82E-50 | -1.69E-46 |
| MS.gene050577 | MS.gene52794 | 0.810006 | 1.43E-50 | -1.69E-46 |
| MS.gene050612 | MS.gene52794 | 0.809618 | 1.73E-50 | -1.69E-46 |
| MS.gene050699 | MS.gene52794 | 0.810675 | 1.02E-50 | -1.69E-46 |
| MS.gene050747 | MS.gene52794 | 0.822537 | 2.25E-53 | -1.69E-46 |
| MS.gene050772 | MS.gene52794 | 0.808292 | 3.33E-50 | -1.69E-46 |
| MS.gene050868 | MS.gene52794 | 0.805263 | 1.45E-49 | -1.69E-46 |
| MS.gene050871 | MS.gene52794 | 0.80518 | 1.51E-49 | -1.69E-46 |
| MS.gene050950 | MS.gene52794 | 0.813414 | 2.59E-51 | -1.69E-46 |
| MS.gene051694 | MS.gene52794 | 0.836822 | 7.47E-57 | -1.69E-46 |
| MS.gene052164 | MS.gene52794 | 0.806843 | 6.76E-50 | -1.69E-46 |
| MS.gene052486 | MS.gene52794 | 0.80182 | 7.52E-49 | -1.69E-46 |
| MS.gene052503 | MS.gene52794 | 0.804104 | 2.54E-49 | -1.69E-46 |
| MS.gene052823 | MS.gene52794 | 0.804965 | 1.68E-49 | -1.69E-46 |
| MS.gene052825 | MS.gene52794 | 0.805704 | 1.17E-49 | -1.69E-46 |
| MS.gene052916 | MS.gene52794 | 0.801987 | 6.95E-49 | -1.69E-46 |
| MS.gene053203 | MS.gene52794 | 0.800756 | 1.24E-48 | -1.69E-46 |
| MS.gene053213 | MS.gene52794 | 0.832292 | 1.03E-55 | -1.69E-46 |
| MS.gene053286 | MS.gene52794 | 0.825617 | 4.25E-54 | -1.69E-46 |
| MS.gene053421 | MS.gene52794 | -0.821721 | 3.47E-53 | -1.69E-46 |
| MS.gene053436 | MS.gene52794 | 0.809875 | 1.52E-50 | -1.69E-46 |
| MS.gene053574 | MS.gene52794 | 0.803509 | 3.37E-49 | -1.69E-46 |
| MS.gene053632 | MS.gene52794 | 0.81934 | 1.22E-52 | -1.69E-46 |
| MS.gene054003 | MS.gene52794 | 0.813602 | 2.36E-51 | -1.69E-46 |
| MS.gene054595 | MS.gene52794 | 0.803517 | 3.36E-49 | -1.69E-46 |
| MS.gene054642 | MS.gene52794 | 0.821639 | 3.63E-53 | -1.69E-46 |
| MS.gene054954 | MS.gene52794 | 0.818113 | 2.32E-52 | -1.69E-46 |
| MS.gene055362 | MS.gene52794 | 0.830278 | 3.21E-55 | -1.69E-46 |
| MS.gene055502 | MS.gene52794 | 0.832077 | 1.16E-55 | -1.69E-46 |
| MS.gene055577 | MS.gene52794 | 0.817858 | 2.65E-52 | -1.69E-46 |
| MS.gene056504 | MS.gene52794 | 0.830952 | 2.20E-55 | -1.69E-46 |
| MS.gene056510 | MS.gene52794 | 0.802204 | 6.27E-49 | -1.69E-46 |
| MS.gene056657 | MS.gene52794 | 0.838489 | 2.79E-57 | -1.69E-46 |
| MS.gene057831 | MS.gene52794 | 0.80092 | 1.15E-48 | -1.69E-46 |
| MS.gene058157 | MS.gene52794 | 0.816774 | 4.65E-52 | -1.69E-46 |
| MS.gene058419 | MS.gene52794 | 0.826133 | 3.21E-54 | -1.69E-46 |
| MS.gene058544 | MS.gene52794 | 0.804042 | 2.61E-49 | -1.69E-46 |
| MS.gene058773 | MS.gene52794 | 0.812676 | 3.76E-51 | -1.69E-46 |
| MS.gene059022 | MS.gene52794 | 0.828982 | 6.64E-55 | -1.69E-46 |
| MS.gene05934 | MS.gene52794 | 0.802889 | 4.53E-49 | -1.69E-46 |
| MS.gene059677 | MS.gene52794 | 0.82954 | 4.86E-55 | -1.69E-46 |
| MS.gene059718 | MS.gene52794 | 0.819057 | 1.42E-52 | -1.69E-46 |
| MS.gene059865 | MS.gene52794 | 0.807952 | 3.93E-50 | -1.69E-46 |
| MS.gene060482 | MS.gene52794 | 0.822627 | 2.14E-53 | -1.69E-46 |
| MS.gene060762 | MS.gene52794 | 0.80802 | 3.80E-50 | -1.69E-46 |
| MS.gene060778 | MS.gene52794 | 0.804089 | 2.55E-49 | -1.69E-46 |
| MS.gene06077 | MS.gene52794 | 0.824211 | 9.13E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52794.t1 | MTR_3g114920 | 94.864 | 331 | 13 | 1 | 1 | 331 | 1 | 327 | 0.0 | 630 |
| MS.gene52794.t1 | MTR_1g116180 | 45.566 | 327 | 138 | 8 | 20 | 321 | 24 | 335 | 3.73e-89 | 273 |
| MS.gene52794.t1 | MTR_7g005970 | 45.312 | 320 | 157 | 9 | 20 | 329 | 25 | 336 | 1.26e-82 | 257 |
| MS.gene52794.t1 | MTR_1g116180 | 45.545 | 303 | 125 | 8 | 20 | 297 | 24 | 311 | 4.76e-80 | 247 |
| MS.gene52794.t1 | MTR_3g009890 | 37.829 | 304 | 115 | 7 | 20 | 317 | 29 | 264 | 2.43e-50 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52794.t1 | AT1G76110 | 63.636 | 308 | 104 | 5 | 18 | 322 | 25 | 327 | 1.20e-131 | 379 |
| MS.gene52794.t1 | AT1G04880 | 41.486 | 323 | 156 | 6 | 23 | 321 | 21 | 334 | 1.01e-78 | 247 |
| MS.gene52794.t1 | AT3G13350 | 40.476 | 294 | 152 | 4 | 25 | 317 | 34 | 305 | 7.80e-65 | 207 |
| MS.gene52794.t1 | AT1G55650 | 36.213 | 301 | 142 | 8 | 27 | 321 | 30 | 286 | 1.71e-53 | 179 |
Find 76 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGGACTGACCAATCATTT+TGG | 0.213880 | 3.1:+90976995 | None:intergenic |
| GCACTATAATTTACCATCTT+AGG | 0.243959 | 3.1:+90977837 | None:intergenic |
| AGACGATGATTCATGTCTTT+TGG | 0.244218 | 3.1:-90977324 | MS.gene52794:CDS |
| TTAACGACCCTACTCTCTTT+TGG | 0.246597 | 3.1:-90978481 | MS.gene52794:CDS |
| GTTAGTTAGTTACATGAATT+TGG | 0.250521 | 3.1:+90978424 | None:intergenic |
| TTATATAGTGTCAGTGAAAT+TGG | 0.257424 | 3.1:-90977267 | MS.gene52794:CDS |
| GTAAACTCCCTTTCTCTGTT+TGG | 0.269610 | 3.1:+90977017 | None:intergenic |
| AAGTTATAGCCACTCCTATT+TGG | 0.286925 | 3.1:+90977080 | None:intergenic |
| TTCAGAGCTGAGACTATTCC+AGG | 0.293074 | 3.1:+90976977 | None:intergenic |
| AGTTCACTTCTTCAAAGTTC+AGG | 0.296129 | 3.1:-90978042 | MS.gene52794:CDS |
| TAAACTCCCTTTCTCTGTTT+GGG | 0.301975 | 3.1:+90977018 | None:intergenic |
| CCAACTATCCAAAGCCAAAT+AGG | 0.317522 | 3.1:-90977094 | MS.gene52794:CDS |
| TATTGAACAATAGCTAATTC+AGG | 0.323525 | 3.1:+90977864 | None:intergenic |
| CTATTTGGCTTTGGATAGTT+GGG | 0.336021 | 3.1:+90977095 | None:intergenic |
| CCTATTTGGCTTTGGATAGT+TGG | 0.350904 | 3.1:+90977094 | None:intergenic |
| TTACCAAAACATTGGCTTAA+GGG | 0.366684 | 3.1:-90976792 | MS.gene52794:CDS |
| TTTACCAAAACATTGGCTTA+AGG | 0.369159 | 3.1:-90976793 | MS.gene52794:CDS |
| TAGCCACTCCTATTTGGCTT+TGG | 0.371071 | 3.1:+90977086 | None:intergenic |
| TTGGGAAAAGGAACAATAGA+AGG | 0.380812 | 3.1:-90977305 | MS.gene52794:CDS |
| AGCGGTTTCTCCTTCATCAT+TGG | 0.385924 | 3.1:-90977204 | MS.gene52794:CDS |
| AGGTTGTTGCAGAGAAGAAA+TGG | 0.399101 | 3.1:-90978163 | MS.gene52794:CDS |
| TCCTACCCAAGCGATGAGTT+TGG | 0.411390 | 3.1:+90977144 | None:intergenic |
| GAGAAGAAATGGAGAGAAGT+AGG | 0.422027 | 3.1:-90978152 | MS.gene52794:CDS |
| TGTCCCTTAAGCCAATGTTT+TGG | 0.427681 | 3.1:+90976789 | None:intergenic |
| TGTTCAATATTCACCTAAGA+TGG | 0.427917 | 3.1:-90977850 | MS.gene52794:CDS |
| AGGGAGTTTACCAAAATGAT+TGG | 0.428453 | 3.1:-90977005 | MS.gene52794:CDS |
| AACTCTACCCAAACAGAGAA+AGG | 0.437948 | 3.1:-90977025 | MS.gene52794:CDS |
| TATATAGTGTCAGTGAAATT+GGG | 0.442454 | 3.1:-90977266 | MS.gene52794:CDS |
| CCAAAATGATTGGTCAGTCC+TGG | 0.444792 | 3.1:-90976995 | MS.gene52794:CDS |
| TTGCATAGGATTCCTGTGAT+TGG | 0.455163 | 3.1:-90978321 | MS.gene52794:intron |
| GTTCACTTCTTCAAAGTTCA+GGG | 0.455272 | 3.1:-90978041 | MS.gene52794:CDS |
| CAATCACCAAACTCATCGCT+TGG | 0.458935 | 3.1:-90977150 | MS.gene52794:CDS |
| TGGGTTCAGAAGTTCTCAAA+GGG | 0.460026 | 3.1:-90977247 | MS.gene52794:CDS |
| TCGTCGCTTTCACTTTCTCA+TGG | 0.469995 | 3.1:-90978450 | MS.gene52794:CDS |
| TTTGCCTTCGTCGTCGTCGC+CGG | 0.479624 | 3.1:+90978541 | None:intergenic |
| TTGTGAGAGGCGAGTGGGTG+AGG | 0.488368 | 3.1:+90978512 | None:intergenic |
| TCTCAGCTCTGAAGAAAGAA+TGG | 0.490573 | 3.1:-90976967 | MS.gene52794:intron |
| AAGGTACAAAAGAGAGTTGA+CGG | 0.495764 | 3.1:-90976762 | MS.gene52794:CDS |
| CGATGAGTTTGGTGATTGAA+TGG | 0.504304 | 3.1:+90977155 | None:intergenic |
| GATTCCTGTGATTGGTGGTA+AGG | 0.506284 | 3.1:-90978313 | MS.gene52794:CDS |
| TTGCAGATTTACCAAAACAT+TGG | 0.511934 | 3.1:-90976800 | MS.gene52794:intron |
| ATAGAAGGAAAATTTGATTG+TGG | 0.518312 | 3.1:-90977290 | MS.gene52794:CDS |
| AAACTCATCGCTTGGGTAGG+AGG | 0.523054 | 3.1:-90977142 | MS.gene52794:CDS |
| TTCTCTACGTGGAAGTTACA+AGG | 0.523185 | 3.1:-90978275 | MS.gene52794:CDS |
| TTGGCTTAAGGGACAAAGAA+AGG | 0.525876 | 3.1:-90976781 | MS.gene52794:CDS |
| AGAGTGTCCCAAAAGAGAGT+AGG | 0.527303 | 3.1:+90978473 | None:intergenic |
| GAGTGTCCCAAAAGAGAGTA+GGG | 0.533581 | 3.1:+90978474 | None:intergenic |
| AATCACCAAACTCATCGCTT+GGG | 0.544065 | 3.1:-90977149 | MS.gene52794:CDS |
| CATAGGATTCCTGTGATTGG+TGG | 0.550359 | 3.1:-90978318 | MS.gene52794:intron |
| AGTGCTGAATCTCATGATGA+AGG | 0.550456 | 3.1:-90977819 | MS.gene52794:intron |
| CGAAATAGTAATACCTGGTG+AGG | 0.553336 | 3.1:+90978004 | None:intergenic |
| TTGGTGATTGAATGGCTCAA+TGG | 0.554617 | 3.1:+90977163 | None:intergenic |
| GAAATAGTAATACCTGGTGA+GGG | 0.568622 | 3.1:+90978005 | None:intergenic |
| ACTCTACCCAAACAGAGAAA+GGG | 0.569820 | 3.1:-90977024 | MS.gene52794:CDS |
| TTGGGTTCAGAAGTTCTCAA+AGG | 0.586901 | 3.1:-90977248 | MS.gene52794:CDS |
| GGAGTACAAACAGAAAATGA+AGG | 0.592924 | 3.1:-90976741 | MS.gene52794:CDS |
| GCTAATTCAGGTTTCCACGA+TGG | 0.602804 | 3.1:+90977876 | None:intergenic |
| AAGGAGAAGCGGTTATGAGA+AGG | 0.604277 | 3.1:-90978256 | MS.gene52794:intron |
| AGCTCCTTACCACCAATCAC+AGG | 0.612482 | 3.1:+90978309 | None:intergenic |
| GTTAACGACGTCGTTGTGAG+AGG | 0.614603 | 3.1:+90978499 | None:intergenic |
| ACGTCGTTGTGAGAGGCGAG+TGG | 0.618608 | 3.1:+90978506 | None:intergenic |
| TTGTGCAGACAGAAGAACTC+GGG | 0.623939 | 3.1:-90976718 | MS.gene52794:CDS |
| TGTTGTGTAACCAATGATGA+AGG | 0.625666 | 3.1:+90977194 | None:intergenic |
| CGTCGTTGTGAGAGGCGAGT+GGG | 0.633264 | 3.1:+90978507 | None:intergenic |
| AACTCCGGCGACGACGACGA+AGG | 0.636321 | 3.1:-90978545 | MS.gene52794:CDS |
| TATCCAAAGCCAAATAGGAG+TGG | 0.645627 | 3.1:-90977089 | MS.gene52794:CDS |
| TGATTTGCACGTTCTCTACG+TGG | 0.652993 | 3.1:-90978286 | MS.gene52794:CDS |
| AAATAGTAATACCTGGTGAG+GGG | 0.654247 | 3.1:+90978006 | None:intergenic |
| GCGGTGAGAAGCAAGAACTC+CGG | 0.655187 | 3.1:-90978560 | MS.gene52794:CDS |
| ACCAAACTCATCGCTTGGGT+AGG | 0.660160 | 3.1:-90977145 | MS.gene52794:CDS |
| GTGGAAGTTACAAGGAGAAG+CGG | 0.661449 | 3.1:-90978267 | MS.gene52794:CDS |
| AATAGTAATACCTGGTGAGG+GGG | 0.665808 | 3.1:+90978007 | None:intergenic |
| GTTGTGCAGACAGAAGAACT+CGG | 0.678933 | 3.1:-90976719 | MS.gene52794:CDS |
| TTTCTGGTAACAGTCCATCG+TGG | 0.712333 | 3.1:-90977890 | MS.gene52794:CDS |
| GGGTTCAGAAGTTCTCAAAG+GGG | 0.716935 | 3.1:-90977246 | MS.gene52794:CDS |
| TCATTGGTTACACAACACAA+CGG | 0.736779 | 3.1:-90977188 | MS.gene52794:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTAATAATTCAAATTTC+AGG | - | chr3.1:90977098-90977117 | MS.gene52794:CDS | 10.0% |
| !! | ACAAAAAATAGTATAAATGA+AGG | + | chr3.1:90977062-90977081 | None:intergenic | 15.0% |
| !! | CAAAAAATAGTATAAATGAA+GGG | + | chr3.1:90977061-90977080 | None:intergenic | 15.0% |
| !! | TTGAAAAAATAAATGAAGAA+AGG | + | chr3.1:90976894-90976913 | None:intergenic | 15.0% |
| !! | AAATGAAATCGCATTTATAA+TGG | + | chr3.1:90976941-90976960 | None:intergenic | 20.0% |
| !! | AAGAAAGAATGGTAATTAAA+AGG | - | chr3.1:90978325-90978344 | MS.gene52794:intron | 20.0% |
| !! | AGAAAGAATGGTAATTAAAA+GGG | - | chr3.1:90978326-90978345 | MS.gene52794:intron | 20.0% |
| !! | AGATATTGAAATTACAGAAT+TGG | - | chr3.1:90977547-90977566 | MS.gene52794:intron | 20.0% |
| !! | TAATGGTTATTTATCAAGTT+AGG | - | chr3.1:90977490-90977509 | MS.gene52794:intron | 20.0% |
| ! | ATAGAAGGAAAATTTGATTG+TGG | - | chr3.1:90977991-90978010 | MS.gene52794:intron | 25.0% |
| ! | GAAAGTAGTTTATGATGTTA+AGG | - | chr3.1:90977741-90977760 | MS.gene52794:intron | 25.0% |
| ! | GTTAGTTAGTTACATGAATT+TGG | + | chr3.1:90976860-90976879 | None:intergenic | 25.0% |
| ! | TATATAGTGTCAGTGAAATT+GGG | - | chr3.1:90978015-90978034 | MS.gene52794:intron | 25.0% |
| ! | TATTGAACAATAGCTAATTC+AGG | + | chr3.1:90977420-90977439 | None:intergenic | 25.0% |
| ! | TCATGATGAAGGTAATTTAA+TGG | - | chr3.1:90977473-90977492 | MS.gene52794:intron | 25.0% |
| ! | TTATATAGTGTCAGTGAAAT+TGG | - | chr3.1:90978014-90978033 | MS.gene52794:intron | 25.0% |
| ! | TTGGTAAATCTGCAATATTA+GGG | + | chr3.1:90978476-90978495 | None:intergenic | 25.0% |
| ! | TTTGGTAAATCTGCAATATT+AGG | + | chr3.1:90978477-90978496 | None:intergenic | 25.0% |
| !!! | ATTGTTGTTTATCTAGAATC+TGG | - | chr3.1:90978392-90978411 | MS.gene52794:intron | 25.0% |
| !!! | TCTGCATATTTAATTTGTCA+TGG | - | chr3.1:90977884-90977903 | MS.gene52794:CDS | 25.0% |
| !!! | TTATAATGGTACTTTTGGTT+TGG | + | chr3.1:90976927-90976946 | None:intergenic | 25.0% |
| AATAGCGAAATAGTAATACC+TGG | + | chr3.1:90977285-90977304 | None:intergenic | 30.0% | |
| ACTCATTTGTGATTCTACTA+AGG | - | chr3.1:90977671-90977690 | MS.gene52794:intron | 30.0% | |
| CAACAATGTAAAGACCAATT+AGG | + | chr3.1:90978379-90978398 | None:intergenic | 30.0% | |
| GAAATTACAGAATTGGAATC+AGG | - | chr3.1:90977554-90977573 | MS.gene52794:intron | 30.0% | |
| GAAGAGAAGAAAAAGAAAGT+GGG | - | chr3.1:90978161-90978180 | MS.gene52794:CDS | 30.0% | |
| GCACTATAATTTACCATCTT+AGG | + | chr3.1:90977447-90977466 | None:intergenic | 30.0% | |
| TGTTCAATATTCACCTAAGA+TGG | - | chr3.1:90977431-90977450 | MS.gene52794:intron | 30.0% | |
| TTGCAGATTTACCAAAACAT+TGG | - | chr3.1:90978481-90978500 | MS.gene52794:CDS | 30.0% | |
| ! | AATGCGATTTCATTTTGCAT+AGG | - | chr3.1:90976946-90976965 | MS.gene52794:intron | 30.0% |
| ! | CGCATTTATAATGGTACTTT+TGG | + | chr3.1:90976932-90976951 | None:intergenic | 30.0% |
| ! | TATATTGCAGATGCATTTTC+TGG | - | chr3.1:90977375-90977394 | MS.gene52794:intron | 30.0% |
| !! | TTACCAAAACATTGGCTTAA+GGG | - | chr3.1:90978489-90978508 | MS.gene52794:CDS | 30.0% |
| !! | TTTACCAAAACATTGGCTTA+AGG | - | chr3.1:90978488-90978507 | MS.gene52794:CDS | 30.0% |
| !!! | GTGTGTTGTTTTATCCTAAT+TGG | - | chr3.1:90978362-90978381 | MS.gene52794:intron | 30.0% |
| AAATAGTAATACCTGGTGAG+GGG | + | chr3.1:90977278-90977297 | None:intergenic | 35.0% | |
| AAGGTACAAAAGAGAGTTGA+CGG | - | chr3.1:90978519-90978538 | MS.gene52794:CDS | 35.0% | |
| AAGTTATAGCCACTCCTATT+TGG | + | chr3.1:90978204-90978223 | None:intergenic | 35.0% | |
| AGGGAGTTTACCAAAATGAT+TGG | - | chr3.1:90978276-90978295 | MS.gene52794:CDS | 35.0% | |
| AGTTCACTTCTTCAAAGTTC+AGG | - | chr3.1:90977239-90977258 | MS.gene52794:CDS | 35.0% | |
| GAAATAGTAATACCTGGTGA+GGG | + | chr3.1:90977279-90977298 | None:intergenic | 35.0% | |
| GGAAGAGAAGAAAAAGAAAG+TGG | - | chr3.1:90978160-90978179 | MS.gene52794:CDS | 35.0% | |
| GGAGTACAAACAGAAAATGA+AGG | - | chr3.1:90978540-90978559 | MS.gene52794:CDS | 35.0% | |
| GTTCACTTCTTCAAAGTTCA+GGG | - | chr3.1:90977240-90977259 | MS.gene52794:CDS | 35.0% | |
| TAAACTCCCTTTCTCTGTTT+GGG | + | chr3.1:90978266-90978285 | None:intergenic | 35.0% | |
| TGTTGTGTAACCAATGATGA+AGG | + | chr3.1:90978090-90978109 | None:intergenic | 35.0% | |
| TTGGGAAAAGGAACAATAGA+AGG | - | chr3.1:90977976-90977995 | MS.gene52794:intron | 35.0% | |
| ! | AGACGATGATTCATGTCTTT+TGG | - | chr3.1:90977957-90977976 | MS.gene52794:intron | 35.0% |
| ! | GACGATGATTCATGTCTTTT+GGG | - | chr3.1:90977958-90977977 | MS.gene52794:intron | 35.0% |
| ! | TAGAAGTAGAAGCATGATTG+TGG | - | chr3.1:90977801-90977820 | MS.gene52794:intron | 35.0% |
| ! | TCATTGGTTACACAACACAA+CGG | - | chr3.1:90978093-90978112 | MS.gene52794:CDS | 35.0% |
| !! | CTATTTGGCTTTGGATAGTT+GGG | + | chr3.1:90978189-90978208 | None:intergenic | 35.0% |
| !! | GATTCATGTCTTTTGGGAAA+AGG | - | chr3.1:90977964-90977983 | MS.gene52794:intron | 35.0% |
| AACTCTACCCAAACAGAGAA+AGG | - | chr3.1:90978256-90978275 | MS.gene52794:intron | 40.0% | |
| AATAGTAATACCTGGTGAGG+GGG | + | chr3.1:90977277-90977296 | None:intergenic | 40.0% | |
| AATCACCAAACTCATCGCTT+GGG | - | chr3.1:90978132-90978151 | MS.gene52794:CDS | 40.0% | |
| ACTCTACCCAAACAGAGAAA+GGG | - | chr3.1:90978257-90978276 | MS.gene52794:CDS | 40.0% | |
| AGGTTGTTGCAGAGAAGAAA+TGG | - | chr3.1:90977118-90977137 | MS.gene52794:CDS | 40.0% | |
| CCAACTATCCAAAGCCAAAT+AGG | - | chr3.1:90978187-90978206 | MS.gene52794:intron | 40.0% | |
| CGAAATAGTAATACCTGGTG+AGG | + | chr3.1:90977280-90977299 | None:intergenic | 40.0% | |
| GAGAAGAAATGGAGAGAAGT+AGG | - | chr3.1:90977129-90977148 | MS.gene52794:CDS | 40.0% | |
| GCTTTACCATCCAGAAAAAG+CGG | - | chr3.1:90978059-90978078 | MS.gene52794:CDS | 40.0% | |
| GTAAACTCCCTTTCTCTGTT+TGG | + | chr3.1:90978267-90978286 | None:intergenic | 40.0% | |
| TATCCAAAGCCAAATAGGAG+TGG | - | chr3.1:90978192-90978211 | MS.gene52794:intron | 40.0% | |
| TGGGTTCAGAAGTTCTCAAA+GGG | - | chr3.1:90978034-90978053 | MS.gene52794:CDS | 40.0% | |
| TTCTCTACGTGGAAGTTACA+AGG | - | chr3.1:90977006-90977025 | MS.gene52794:CDS | 40.0% | |
| TTGCATAGGATTCCTGTGAT+TGG | - | chr3.1:90976960-90976979 | MS.gene52794:intron | 40.0% | |
| TTGGCTTAAGGGACAAAGAA+AGG | - | chr3.1:90978500-90978519 | MS.gene52794:CDS | 40.0% | |
| TTGGGTTCAGAAGTTCTCAA+AGG | - | chr3.1:90978033-90978052 | MS.gene52794:CDS | 40.0% | |
| ! | AGTGCTGAATCTCATGATGA+AGG | - | chr3.1:90977462-90977481 | MS.gene52794:intron | 40.0% |
| ! | ATGATTGTGGACTCAAGTTG+AGG | - | chr3.1:90977814-90977833 | MS.gene52794:intron | 40.0% |
| ! | CGATGAGTTTGGTGATTGAA+TGG | + | chr3.1:90978129-90978148 | None:intergenic | 40.0% |
| ! | TAACGACCCTACTCTCTTTT+GGG | - | chr3.1:90976801-90976820 | MS.gene52794:intron | 40.0% |
| ! | TGTCCCTTAAGCCAATGTTT+TGG | + | chr3.1:90978495-90978514 | None:intergenic | 40.0% |
| ! | TTAACGACCCTACTCTCTTT+TGG | - | chr3.1:90976800-90976819 | MS.gene52794:intron | 40.0% |
| ! | TTGGTGATTGAATGGCTCAA+TGG | + | chr3.1:90978121-90978140 | None:intergenic | 40.0% |
| !! | CCTATTTGGCTTTGGATAGT+TGG | + | chr3.1:90978190-90978209 | None:intergenic | 40.0% |
| !! | TCTCAGCTCTGAAGAAAGAA+TGG | - | chr3.1:90978314-90978333 | MS.gene52794:CDS | 40.0% |
| !! | TGGACTCAAGTTGAGGATTT+AGG | - | chr3.1:90977821-90977840 | MS.gene52794:CDS | 40.0% |
| AAGGAGAAGCGGTTATGAGA+AGG | - | chr3.1:90977025-90977044 | MS.gene52794:CDS | 45.0% | |
| AGCGGTTTCTCCTTCATCAT+TGG | - | chr3.1:90978077-90978096 | MS.gene52794:CDS | 45.0% | |
| CAATCACCAAACTCATCGCT+TGG | - | chr3.1:90978131-90978150 | MS.gene52794:CDS | 45.0% | |
| CATAGGATTCCTGTGATTGG+TGG | - | chr3.1:90976963-90976982 | MS.gene52794:intron | 45.0% | |
| GAGTGTCCCAAAAGAGAGTA+GGG | + | chr3.1:90976810-90976829 | None:intergenic | 45.0% | |
| GGGTTCAGAAGTTCTCAAAG+GGG | - | chr3.1:90978035-90978054 | MS.gene52794:CDS | 45.0% | |
| GTGGAAGTTACAAGGAGAAG+CGG | - | chr3.1:90977014-90977033 | MS.gene52794:CDS | 45.0% | |
| GTTGTGCAGACAGAAGAACT+CGG | - | chr3.1:90978562-90978581 | MS.gene52794:CDS | 45.0% | |
| TTCAGAGCTGAGACTATTCC+AGG | + | chr3.1:90978307-90978326 | None:intergenic | 45.0% | |
| TTGTGCAGACAGAAGAACTC+GGG | - | chr3.1:90978563-90978582 | MS.gene52794:CDS | 45.0% | |
| ! | AGAGTGTCCCAAAAGAGAGT+AGG | + | chr3.1:90976811-90976830 | None:intergenic | 45.0% |
| ! | CCAAAATGATTGGTCAGTCC+TGG | - | chr3.1:90978286-90978305 | MS.gene52794:CDS | 45.0% |
| ! | CCAGGACTGACCAATCATTT+TGG | + | chr3.1:90978289-90978308 | None:intergenic | 45.0% |
| ! | GATTCCTGTGATTGGTGGTA+AGG | - | chr3.1:90976968-90976987 | MS.gene52794:CDS | 45.0% |
| ! | GCTAATTCAGGTTTCCACGA+TGG | + | chr3.1:90977408-90977427 | None:intergenic | 45.0% |
| ! | TAGCCACTCCTATTTGGCTT+TGG | + | chr3.1:90978198-90978217 | None:intergenic | 45.0% |
| ! | TCGTCGCTTTCACTTTCTCA+TGG | - | chr3.1:90976831-90976850 | MS.gene52794:intron | 45.0% |
| ! | TGATTTGCACGTTCTCTACG+TGG | - | chr3.1:90976995-90977014 | MS.gene52794:CDS | 45.0% |
| ! | TTTCTGGTAACAGTCCATCG+TGG | - | chr3.1:90977391-90977410 | MS.gene52794:intron | 45.0% |
| !!! | GAAGGAGAAACCGCTTTTTC+TGG | + | chr3.1:90978072-90978091 | None:intergenic | 45.0% |
| !!! | GAGAAACCGCTTTTTCTGGA+TGG | + | chr3.1:90978068-90978087 | None:intergenic | 45.0% |
| !! | AAATAATTGAATTTAAATTA+AGG | - | chr3.1:90977518-90977537 | MS.gene52794:intron | 5.0% |
| !! | AATAATTGAATTTAAATTAA+GGG | - | chr3.1:90977519-90977538 | MS.gene52794:intron | 5.0% |
| AAACTCATCGCTTGGGTAGG+AGG | - | chr3.1:90978139-90978158 | MS.gene52794:CDS | 50.0% | |
| ACCAAACTCATCGCTTGGGT+AGG | - | chr3.1:90978136-90978155 | MS.gene52794:CDS | 50.0% | |
| AGCTCCTTACCACCAATCAC+AGG | + | chr3.1:90976975-90976994 | None:intergenic | 50.0% | |
| GTTAACGACGTCGTTGTGAG+AGG | + | chr3.1:90976785-90976804 | None:intergenic | 50.0% | |
| TCCTACCCAAGCGATGAGTT+TGG | + | chr3.1:90978140-90978159 | None:intergenic | 50.0% | |
| CCTATTTACACCCCCTCACC+AGG | - | chr3.1:90977264-90977283 | MS.gene52794:CDS | 55.0% | |
| GCGGTGAGAAGCAAGAACTC+CGG | - | chr3.1:90976721-90976740 | MS.gene52794:CDS | 55.0% | |
| ! | CCTGGTGAGGGGGTGTAAAT+AGG | + | chr3.1:90977267-90977286 | None:intergenic | 55.0% |
| ACGTCGTTGTGAGAGGCGAG+TGG | + | chr3.1:90976778-90976797 | None:intergenic | 60.0% | |
| CGTCGTTGTGAGAGGCGAGT+GGG | + | chr3.1:90976777-90976796 | None:intergenic | 60.0% | |
| TTGTGAGAGGCGAGTGGGTG+AGG | + | chr3.1:90976772-90976791 | None:intergenic | 60.0% | |
| TTTGCCTTCGTCGTCGTCGC+CGG | + | chr3.1:90976743-90976762 | None:intergenic | 60.0% | |
| AACTCCGGCGACGACGACGA+AGG | - | chr3.1:90976736-90976755 | MS.gene52794:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 90976709 | 90978594 | 90976709 | ID=MS.gene52794 |
| chr3.1 | mRNA | 90976709 | 90978594 | 90976709 | ID=MS.gene52794.t1;Parent=MS.gene52794 |
| chr3.1 | exon | 90978437 | 90978594 | 90978437 | ID=MS.gene52794.t1.exon1;Parent=MS.gene52794.t1 |
| chr3.1 | CDS | 90978437 | 90978594 | 90978437 | ID=cds.MS.gene52794.t1;Parent=MS.gene52794.t1 |
| chr3.1 | exon | 90978257 | 90978335 | 90978257 | ID=MS.gene52794.t1.exon2;Parent=MS.gene52794.t1 |
| chr3.1 | CDS | 90978257 | 90978335 | 90978257 | ID=cds.MS.gene52794.t1;Parent=MS.gene52794.t1 |
| chr3.1 | exon | 90978018 | 90978183 | 90978018 | ID=MS.gene52794.t1.exon3;Parent=MS.gene52794.t1 |
| chr3.1 | CDS | 90978018 | 90978183 | 90978018 | ID=cds.MS.gene52794.t1;Parent=MS.gene52794.t1 |
| chr3.1 | exon | 90977820 | 90977918 | 90977820 | ID=MS.gene52794.t1.exon4;Parent=MS.gene52794.t1 |
| chr3.1 | CDS | 90977820 | 90977918 | 90977820 | ID=cds.MS.gene52794.t1;Parent=MS.gene52794.t1 |
| chr3.1 | exon | 90976968 | 90977353 | 90976968 | ID=MS.gene52794.t1.exon5;Parent=MS.gene52794.t1 |
| chr3.1 | CDS | 90976968 | 90977353 | 90976968 | ID=cds.MS.gene52794.t1;Parent=MS.gene52794.t1 |
| chr3.1 | exon | 90976709 | 90976816 | 90976709 | ID=MS.gene52794.t1.exon6;Parent=MS.gene52794.t1 |
| chr3.1 | CDS | 90976709 | 90976816 | 90976709 | ID=cds.MS.gene52794.t1;Parent=MS.gene52794.t1 |
| Gene Sequence |
| Protein sequence |
