Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54415.t1 | XP_003621060.1 | 88.4 | 172 | 20 | 0 | 2 | 173 | 7 | 178 | 2.20E-84 | 321.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54415.t1 | Q9SXZ2 | 64.9 | 168 | 58 | 1 | 4 | 171 | 9 | 175 | 1.2e-62 | 240.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54415.t1 | F8T7T3 | 88.4 | 172 | 20 | 0 | 2 | 173 | 7 | 178 | 1.6e-84 | 321.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049222 | MS.gene54415 | 0.801707 | 7.93E-49 | -1.69E-46 |
| MS.gene049232 | MS.gene54415 | 0.855809 | 4.92E-62 | -1.69E-46 |
| MS.gene049552 | MS.gene54415 | 0.848278 | 6.79E-60 | -1.69E-46 |
| MS.gene049600 | MS.gene54415 | 0.801124 | 1.04E-48 | -1.69E-46 |
| MS.gene049656 | MS.gene54415 | 0.839951 | 1.17E-57 | -1.69E-46 |
| MS.gene049657 | MS.gene54415 | 0.841805 | 3.80E-58 | -1.69E-46 |
| MS.gene05010 | MS.gene54415 | 0.814491 | 1.50E-51 | -1.69E-46 |
| MS.gene050170 | MS.gene54415 | 0.830331 | 3.12E-55 | -1.69E-46 |
| MS.gene050216 | MS.gene54415 | 0.808631 | 2.82E-50 | -1.69E-46 |
| MS.gene050323 | MS.gene54415 | 0.81847 | 1.93E-52 | -1.69E-46 |
| MS.gene050496 | MS.gene54415 | 0.82778 | 1.30E-54 | -1.69E-46 |
| MS.gene050502 | MS.gene54415 | 0.842903 | 1.95E-58 | -1.69E-46 |
| MS.gene050504 | MS.gene54415 | 0.80634 | 8.63E-50 | -1.69E-46 |
| MS.gene050577 | MS.gene54415 | 0.817837 | 2.68E-52 | -1.69E-46 |
| MS.gene050868 | MS.gene54415 | 0.802752 | 4.83E-49 | -1.69E-46 |
| MS.gene050871 | MS.gene54415 | 0.807353 | 5.27E-50 | -1.69E-46 |
| MS.gene05118 | MS.gene54415 | 0.80722 | 5.62E-50 | -1.69E-46 |
| MS.gene051509 | MS.gene54415 | 0.805637 | 1.21E-49 | -1.69E-46 |
| MS.gene051551 | MS.gene54415 | 0.817406 | 3.35E-52 | -1.69E-46 |
| MS.gene052164 | MS.gene54415 | 0.813453 | 2.54E-51 | -1.69E-46 |
| MS.gene052482 | MS.gene54415 | 0.810841 | 9.43E-51 | -1.69E-46 |
| MS.gene052486 | MS.gene54415 | 0.820248 | 7.58E-53 | -1.69E-46 |
| MS.gene052503 | MS.gene54415 | 0.815137 | 1.08E-51 | -1.69E-46 |
| MS.gene052823 | MS.gene54415 | 0.825724 | 4.01E-54 | -1.69E-46 |
| MS.gene052825 | MS.gene54415 | 0.812551 | 4.01E-51 | -1.69E-46 |
| MS.gene053436 | MS.gene54415 | 0.836854 | 7.33E-57 | -1.69E-46 |
| MS.gene053505 | MS.gene54415 | 0.822839 | 1.91E-53 | -1.69E-46 |
| MS.gene053574 | MS.gene54415 | 0.816408 | 5.62E-52 | -1.69E-46 |
| MS.gene053626 | MS.gene54415 | 0.835924 | 1.26E-56 | -1.69E-46 |
| MS.gene053633 | MS.gene54415 | 0.819736 | 9.93E-53 | -1.69E-46 |
| MS.gene054595 | MS.gene54415 | 0.808329 | 3.27E-50 | -1.69E-46 |
| MS.gene054954 | MS.gene54415 | 0.809685 | 1.67E-50 | -1.69E-46 |
| MS.gene055750 | MS.gene54415 | 0.803643 | 3.16E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene54415 | 0.802605 | 5.18E-49 | -1.69E-46 |
| MS.gene056046 | MS.gene54415 | 0.862 | 6.91E-64 | -1.69E-46 |
| MS.gene056504 | MS.gene54415 | 0.850704 | 1.43E-60 | -1.69E-46 |
| MS.gene056878 | MS.gene54415 | 0.830795 | 2.40E-55 | -1.69E-46 |
| MS.gene057086 | MS.gene54415 | 0.802647 | 5.08E-49 | -1.69E-46 |
| MS.gene057687 | MS.gene54415 | 0.800016 | 1.76E-48 | -1.69E-46 |
| MS.gene05787 | MS.gene54415 | 0.820869 | 5.46E-53 | -1.69E-46 |
| MS.gene058157 | MS.gene54415 | 0.829265 | 5.67E-55 | -1.69E-46 |
| MS.gene058183 | MS.gene54415 | 0.836343 | 9.90E-57 | -1.69E-46 |
| MS.gene059034 | MS.gene54415 | 0.832514 | 9.05E-56 | -1.69E-46 |
| MS.gene059367 | MS.gene54415 | 0.83497 | 2.20E-56 | -1.69E-46 |
| MS.gene059837 | MS.gene54415 | 0.808244 | 3.41E-50 | -1.69E-46 |
| MS.gene059865 | MS.gene54415 | 0.813111 | 3.02E-51 | -1.69E-46 |
| MS.gene06000 | MS.gene54415 | 0.820474 | 6.73E-53 | -1.69E-46 |
| MS.gene060482 | MS.gene54415 | 0.844464 | 7.44E-59 | -1.69E-46 |
| MS.gene060595 | MS.gene54415 | -0.819024 | 1.44E-52 | -1.69E-46 |
| MS.gene060778 | MS.gene54415 | 0.863523 | 2.34E-64 | -1.69E-46 |
| MS.gene06077 | MS.gene54415 | 0.828088 | 1.09E-54 | -1.69E-46 |
| MS.gene06097 | MS.gene54415 | 0.811232 | 7.76E-51 | -1.69E-46 |
| MS.gene060982 | MS.gene54415 | 0.823048 | 1.71E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54415.t1 | MTR_7g006690 | 88.372 | 172 | 20 | 0 | 2 | 173 | 7 | 178 | 5.96e-113 | 318 |
| MS.gene54415.t1 | MTR_7g006630 | 88.439 | 173 | 20 | 0 | 1 | 173 | 1 | 173 | 9.89e-112 | 315 |
| MS.gene54415.t1 | MTR_6g033040 | 67.647 | 170 | 54 | 1 | 2 | 171 | 7 | 175 | 1.06e-81 | 239 |
| MS.gene54415.t1 | MTR_7g084970 | 66.667 | 168 | 55 | 1 | 2 | 169 | 7 | 173 | 1.53e-79 | 234 |
| MS.gene54415.t1 | MTR_7g085020 | 61.905 | 168 | 63 | 1 | 2 | 169 | 8 | 174 | 7.32e-73 | 217 |
| MS.gene54415.t1 | MTR_7g085040 | 60.736 | 163 | 62 | 2 | 8 | 170 | 10 | 170 | 1.03e-68 | 206 |
| MS.gene54415.t1 | MTR_0020s0120 | 56.805 | 169 | 72 | 1 | 1 | 169 | 5 | 172 | 1.30e-66 | 201 |
| MS.gene54415.t1 | MTR_7g104460 | 55.689 | 167 | 72 | 2 | 4 | 169 | 9 | 174 | 2.14e-62 | 190 |
| MS.gene54415.t1 | MTR_0020s0120 | 55.030 | 169 | 68 | 2 | 1 | 169 | 5 | 165 | 1.87e-61 | 187 |
| MS.gene54415.t1 | MTR_1g060190 | 53.125 | 160 | 72 | 2 | 2 | 159 | 7 | 165 | 1.42e-58 | 181 |
| MS.gene54415.t1 | MTR_2g086270 | 48.521 | 169 | 85 | 2 | 2 | 169 | 6 | 173 | 1.40e-56 | 176 |
| MS.gene54415.t1 | MTR_8g106840 | 48.824 | 170 | 84 | 3 | 1 | 169 | 6 | 173 | 1.09e-46 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54415.t1 | AT1G65480 | 64.118 | 170 | 60 | 1 | 2 | 171 | 51 | 219 | 1.35e-80 | 238 |
| MS.gene54415.t1 | AT1G65480 | 64.118 | 170 | 60 | 1 | 2 | 171 | 7 | 175 | 1.36e-80 | 236 |
| MS.gene54415.t1 | AT4G20370 | 62.130 | 169 | 63 | 1 | 2 | 170 | 7 | 174 | 2.33e-76 | 226 |
| MS.gene54415.t1 | AT5G62040 | 53.988 | 163 | 74 | 1 | 4 | 165 | 8 | 170 | 8.88e-61 | 186 |
| MS.gene54415.t1 | AT5G03840 | 53.892 | 167 | 75 | 2 | 4 | 169 | 12 | 177 | 4.53e-59 | 182 |
| MS.gene54415.t1 | AT2G27550 | 49.704 | 169 | 84 | 1 | 2 | 169 | 7 | 175 | 1.53e-57 | 178 |
| MS.gene54415.t1 | AT1G18100 | 50.292 | 171 | 81 | 3 | 1 | 169 | 5 | 173 | 6.71e-51 | 161 |
Find 53 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTGGTGGGTTAACTATT+TGG | 0.101664 | 7.4:-92951341 | None:intergenic |
| TTACAAATTCAGTGTCTTTC+AGG | 0.122353 | 7.4:+92951265 | MS.gene54415:CDS |
| AAAGACACTGAATTTGTAAA+AGG | 0.219593 | 7.4:-92951261 | None:intergenic |
| CTTGTTGTTGGTGGTGTAAT+TGG | 0.225955 | 7.4:+92951225 | MS.gene54415:CDS |
| TTTGCAGAAGTTTACAATCT+TGG | 0.279344 | 7.4:+92954163 | MS.gene54415:CDS |
| TGAATCCCTCTTGTTGGTCT+TGG | 0.316500 | 7.4:-92954055 | None:intergenic |
| TCTTGGTGGGTTAACTATTT+GGG | 0.334065 | 7.4:-92951340 | None:intergenic |
| CCCTGTAGTCGCTGGAATAT+TGG | 0.340527 | 7.4:-92953684 | None:intergenic |
| TCAGTAGGGCTTGGTGCATC+AGG | 0.356176 | 7.4:-92952117 | None:intergenic |
| TACAGGTATTCCCTCATATT+AGG | 0.366238 | 7.4:-92952141 | None:intergenic |
| TTGTGGTTATAATTATTAGA+TGG | 0.404057 | 7.4:-92954251 | None:intergenic |
| TTTCCACCAACTTGAACTCT+TGG | 0.407751 | 7.4:-92951357 | None:intergenic |
| CCAGAGTGTGTAGGGTTCTC+AGG | 0.411027 | 7.4:-92951383 | None:intergenic |
| TGTTGTTTAAGCAACCTTGT+AGG | 0.415361 | 7.4:+92954092 | MS.gene54415:CDS |
| CCACCAACTTGAACTCTTGG+TGG | 0.429744 | 7.4:-92951354 | None:intergenic |
| TACAAATTCAGTGTCTTTCA+GGG | 0.444238 | 7.4:+92951266 | MS.gene54415:CDS |
| GCCCTACTGATCCTAATATG+AGG | 0.445100 | 7.4:+92952130 | MS.gene54415:CDS |
| TGTCAACGAGAAAGTGGTTC+CGG | 0.448740 | 7.4:+92954214 | MS.gene54415:CDS |
| ACCAATATTCCAGCGACTAC+AGG | 0.450659 | 7.4:+92953683 | MS.gene54415:CDS |
| ATATGAGGGAATACCTGTAT+TGG | 0.453295 | 7.4:+92952145 | MS.gene54415:CDS |
| ACACGATGAATCCCTCTTGT+TGG | 0.458184 | 7.4:-92954061 | None:intergenic |
| TTCAATTGTCAACGAGAAAG+TGG | 0.476637 | 7.4:+92954208 | MS.gene54415:CDS |
| TTGAAATAGAGAGCAGCAAC+AGG | 0.483630 | 7.4:-92954190 | None:intergenic |
| ATGAATTCCCTTGTTGTTGG+TGG | 0.489339 | 7.4:+92951216 | MS.gene54415:CDS |
| AAATTCAAACTTACCAATAC+AGG | 0.502537 | 7.4:-92952158 | None:intergenic |
| GCGACTACAGGGACAACATT+CGG | 0.503478 | 7.4:+92953695 | MS.gene54415:CDS |
| AATGTTGTCCCTGTAGTCGC+TGG | 0.506880 | 7.4:-92953692 | None:intergenic |
| CACCAACTTGAACTCTTGGT+GGG | 0.509185 | 7.4:-92951353 | None:intergenic |
| TATACCAACCAGAGTGTGTA+GGG | 0.509279 | 7.4:-92951391 | None:intergenic |
| ATATTAGGATCAGTAGGGCT+TGG | 0.509781 | 7.4:-92952126 | None:intergenic |
| AAGACACTGAATTTGTAAAA+GGG | 0.531689 | 7.4:-92951260 | None:intergenic |
| GCTAATATAGTGTGCCTACA+AGG | 0.535198 | 7.4:-92954106 | None:intergenic |
| CCACCAAGAGTTCAAGTTGG+TGG | 0.538019 | 7.4:+92951354 | MS.gene54415:CDS |
| GATGGTTAGCCTCCTTCCAC+CGG | 0.542124 | 7.4:-92954233 | None:intergenic |
| GAGAAAGTGGTTCCGGTGGA+AGG | 0.542228 | 7.4:+92954221 | MS.gene54415:CDS |
| CAGTAGGGCTTGGTGCATCA+GGG | 0.543914 | 7.4:-92952116 | None:intergenic |
| TCAATGAATTCCCTTGTTGT+TGG | 0.548648 | 7.4:+92951213 | None:intergenic |
| CCCTCATATTAGGATCAGTA+GGG | 0.548872 | 7.4:-92952131 | None:intergenic |
| CCCTACTGATCCTAATATGA+GGG | 0.564661 | 7.4:+92952131 | MS.gene54415:CDS |
| GAAAATCCAAGACCAACAAG+AGG | 0.566107 | 7.4:+92954049 | MS.gene54415:CDS |
| CCTGAGAACCCTACACACTC+TGG | 0.566847 | 7.4:+92951383 | MS.gene54415:CDS |
| CAATTACACCACCAACAACA+AGG | 0.568356 | 7.4:-92951224 | None:intergenic |
| TCCCTCATATTAGGATCAGT+AGG | 0.580960 | 7.4:-92952132 | None:intergenic |
| CCAATATTCCAGCGACTACA+GGG | 0.601358 | 7.4:+92953684 | MS.gene54415:CDS |
| GGTGGGTTAACTATTTGGGA+CGG | 0.602001 | 7.4:-92951336 | None:intergenic |
| GTATACCAACCAGAGTGTGT+AGG | 0.613080 | 7.4:-92951392 | None:intergenic |
| AAAATCCAAGACCAACAAGA+GGG | 0.616950 | 7.4:+92954050 | MS.gene54415:CDS |
| CAACGAGAAAGTGGTTCCGG+TGG | 0.628002 | 7.4:+92954217 | MS.gene54415:CDS |
| AAAGTGGTTCCGGTGGAAGG+AGG | 0.632372 | 7.4:+92954224 | MS.gene54415:CDS |
| AACCCACCAAGAGTTCAAGT+TGG | 0.642757 | 7.4:+92951351 | MS.gene54415:CDS |
| AATAACAAAGAAGTCATCAA+CGG | 0.645377 | 7.4:+92951300 | MS.gene54415:CDS |
| AATTACACCACCAACAACAA+GGG | 0.656428 | 7.4:-92951223 | None:intergenic |
| AACAAAGAAGTCATCAACGG+TGG | 0.689200 | 7.4:+92951303 | MS.gene54415:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCCAAAAATATTATAAAT+TGG | - | chr7.4:92952738-92952757 | None:intergenic | 10.0% |
| !! | TTATTTATTAAAGATCTATT+TGG | - | chr7.4:92952572-92952591 | None:intergenic | 10.0% |
| !! | TTGTATAAATATTCAAAAAA+TGG | - | chr7.4:92952778-92952797 | None:intergenic | 10.0% |
| !!! | AATTTTTTAATAATTTAGCA+TGG | + | chr7.4:92952934-92952953 | MS.gene54415:intron | 10.0% |
| !!! | ATACATTTTTATATATAACA+AGG | + | chr7.4:92953813-92953832 | MS.gene54415:intron | 10.0% |
| !!! | ATCATATTTTTATTTTGTTT+CGG | + | chr7.4:92952223-92952242 | MS.gene54415:intron | 10.0% |
| !!! | TAATATTTTTGGAATTTATA+AGG | + | chr7.4:92952743-92952762 | MS.gene54415:intron | 10.0% |
| !!! | TACATTTTTATATATAACAA+GGG | + | chr7.4:92953814-92953833 | MS.gene54415:intron | 10.0% |
| !! | ACAAAATAAAAATATGATTG+TGG | - | chr7.4:92952221-92952240 | None:intergenic | 15.0% |
| !! | GATTATGTGTTAATTAATTT+GGG | - | chr7.4:92951959-92951978 | None:intergenic | 15.0% |
| !! | TGATAAATATTATTATGTCT+TGG | + | chr7.4:92952255-92952274 | MS.gene54415:intron | 15.0% |
| !! | TGATTATGTGTTAATTAATT+TGG | - | chr7.4:92951960-92951979 | None:intergenic | 15.0% |
| !!! | AAAAAAAAAGTGTTGTATTT+AGG | + | chr7.4:92953398-92953417 | MS.gene54415:intron | 15.0% |
| !!! | CAACCAATTTATAATATTTT+TGG | + | chr7.4:92952732-92952751 | MS.gene54415:intron | 15.0% |
| !!! | TATATTTTTCATGAATTCAA+AGG | - | chr7.4:92953088-92953107 | None:intergenic | 15.0% |
| !! | AATACAAACTAAACCTAATT+GGG | + | chr7.4:92952005-92952024 | MS.gene54415:intron | 20.0% |
| !! | AGTGTAAGAACAAATAATTT+GGG | - | chr7.4:92952825-92952844 | None:intergenic | 20.0% |
| !! | ATATTCAAAAAATGGTAAGT+TGG | - | chr7.4:92952770-92952789 | None:intergenic | 20.0% |
| !! | ATCAAAATAAAGATAAACAG+TGG | - | chr7.4:92953239-92953258 | None:intergenic | 20.0% |
| !! | GAAAAATATAACTTCAATTG+TGG | + | chr7.4:92953098-92953117 | MS.gene54415:intron | 20.0% |
| !! | TAGTGTAAGAACAAATAATT+TGG | - | chr7.4:92952826-92952845 | None:intergenic | 20.0% |
| !! | TATAGAAATTAGAGTTGAAA+CGG | + | chr7.4:92951505-92951524 | MS.gene54415:intron | 20.0% |
| !! | TATTTAGGTCAGAAAATAAT+TGG | + | chr7.4:92953413-92953432 | MS.gene54415:intron | 20.0% |
| !! | TCAAAATAAAGATAAACAGT+GGG | - | chr7.4:92953238-92953257 | None:intergenic | 20.0% |
| !! | TTGTATTGAAGTAATGTTAT+TGG | - | chr7.4:92951992-92952011 | None:intergenic | 20.0% |
| !! | TTTCTATATAAAAATCTCCT+TGG | - | chr7.4:92951493-92951512 | None:intergenic | 20.0% |
| !!! | AGTTTTTCACCTTTTTTTTA+AGG | - | chr7.4:92951855-92951874 | None:intergenic | 20.0% |
| !!! | CTTTCACTAATTAAAGATTT+TGG | - | chr7.4:92952047-92952066 | None:intergenic | 20.0% |
| !!! | GTTTATCTTTATTTTGATGA+TGG | + | chr7.4:92953241-92953260 | MS.gene54415:intron | 20.0% |
| ! | AAAAATAAGCCAAACAAAAG+AGG | - | chr7.4:92952379-92952398 | None:intergenic | 25.0% |
| ! | AAACTCCTTCCTTAAAAAAA+AGG | + | chr7.4:92951843-92951862 | MS.gene54415:intron | 25.0% |
| ! | AAAGACACTGAATTTGTAAA+AGG | - | chr7.4:92951264-92951283 | None:intergenic | 25.0% |
| ! | AAATTCAAACTTACCAATAC+AGG | - | chr7.4:92952161-92952180 | None:intergenic | 25.0% |
| ! | AAGACACTGAATTTGTAAAA+GGG | - | chr7.4:92951263-92951282 | None:intergenic | 25.0% |
| ! | AAGTAACTTTCTTCTATGTT+TGG | - | chr7.4:92951596-92951615 | None:intergenic | 25.0% |
| ! | AATAACAAAGAAGTCATCAA+CGG | + | chr7.4:92951300-92951319 | MS.gene54415:CDS | 25.0% |
| ! | AATACACAACTTATGATTTG+CGG | + | chr7.4:92952899-92952918 | MS.gene54415:intron | 25.0% |
| ! | AGTTCAAATTGCCAAATTAA+TGG | + | chr7.4:92951752-92951771 | MS.gene54415:intron | 25.0% |
| ! | ATAGTTCATTCTTTGCAATT+TGG | + | chr7.4:92953188-92953207 | MS.gene54415:intron | 25.0% |
| ! | ATGCATTTGAACAATGTTTA+TGG | + | chr7.4:92953291-92953310 | MS.gene54415:intron | 25.0% |
| ! | CAATACAAACTAAACCTAAT+TGG | + | chr7.4:92952004-92952023 | MS.gene54415:intron | 25.0% |
| ! | GGTTATATACAAAGTATAAG+AGG | + | chr7.4:92951533-92951552 | MS.gene54415:intron | 25.0% |
| ! | TTAAGAGACATTAATCCATA+AGG | + | chr7.4:92951617-92951636 | MS.gene54415:intron | 25.0% |
| !! | TTTTTATATATAACAAGGGC+CGG | + | chr7.4:92953818-92953837 | MS.gene54415:intron | 25.0% |
| !! | TTTTTGATAAGTCAATTCAC+TGG | - | chr7.4:92952878-92952897 | None:intergenic | 25.0% |
| !!! | ATATTTTAAGAGTGCGTTTT+AGG | + | chr7.4:92952352-92952371 | MS.gene54415:intron | 25.0% |
| !!! | ATTAGTGAAAGCTTTTTTCT+AGG | + | chr7.4:92952056-92952075 | MS.gene54415:intron | 25.0% |
| !!! | CACGTTGTTTTATTAATTGT+AGG | + | chr7.4:92954007-92954026 | MS.gene54415:intron | 25.0% |
| !!! | GACATAACTTTTTTTCTGAA+AGG | - | chr7.4:92951650-92951669 | None:intergenic | 25.0% |
| !!! | TATTTTAAGAGTGCGTTTTA+GGG | + | chr7.4:92952353-92952372 | MS.gene54415:intron | 25.0% |
| !!! | TTAGTGAAAGCTTTTTTCTA+GGG | + | chr7.4:92952057-92952076 | MS.gene54415:intron | 25.0% |
| !!! | TTATTTCTTTTGAACAACCA+AGG | + | chr7.4:92951473-92951492 | MS.gene54415:intron | 25.0% |
| !!! | TTTCACCTTTTTTTTAAGGA+AGG | - | chr7.4:92951851-92951870 | None:intergenic | 25.0% |
| AATTAGAGTTGAAACGGTTT+AGG | + | chr7.4:92951511-92951530 | MS.gene54415:intron | 30.0% | |
| ACCATTTCCCTCTTTATTAT+TGG | + | chr7.4:92953641-92953660 | MS.gene54415:intron | 30.0% | |
| ATAGCGATCCAATAATAAAG+AGG | - | chr7.4:92953652-92953671 | None:intergenic | 30.0% | |
| ATTAGAGTTGAAACGGTTTA+GGG | + | chr7.4:92951512-92951531 | MS.gene54415:intron | 30.0% | |
| CTAGAAATGGCAATAAGTTT+CGG | - | chr7.4:92951731-92951750 | None:intergenic | 30.0% | |
| CTATAGGACTTAAATTTGGT+TGG | - | chr7.4:92952851-92952870 | None:intergenic | 30.0% | |
| GACAATATTTCTTGTAGTGA+AGG | - | chr7.4:92951781-92951800 | None:intergenic | 30.0% | |
| GCAATTTGAACTACTAGAAA+TGG | - | chr7.4:92951744-92951763 | None:intergenic | 30.0% | |
| TAACTTTCTTCTATGTTTGG+AGG | - | chr7.4:92951593-92951612 | None:intergenic | 30.0% | |
| TACAAATTCAGTGTCTTTCA+GGG | + | chr7.4:92951266-92951285 | MS.gene54415:CDS | 30.0% | |
| TAGCGATCCAATAATAAAGA+GGG | - | chr7.4:92953651-92953670 | None:intergenic | 30.0% | |
| TATACAAAGTATAAGAGGCA+TGG | + | chr7.4:92951538-92951557 | MS.gene54415:intron | 30.0% | |
| TCCAATAATAAAGAGGGAAA+TGG | - | chr7.4:92953645-92953664 | None:intergenic | 30.0% | |
| TTACAAATTCAGTGTCTTTC+AGG | + | chr7.4:92951265-92951284 | MS.gene54415:CDS | 30.0% | |
| TTATTATTGGATCGCTATAC+AGG | + | chr7.4:92953654-92953673 | MS.gene54415:intron | 30.0% | |
| TTTGCAGAAGTTTACAATCT+TGG | + | chr7.4:92954163-92954182 | MS.gene54415:CDS | 30.0% | |
| ! | ATAAAATTTTGTCTCGATCG+AGG | - | chr7.4:92954133-92954152 | None:intergenic | 30.0% |
| ! | ATACACAACTTATGATTTGC+GGG | + | chr7.4:92952900-92952919 | MS.gene54415:intron | 30.0% |
| ! | TGGCTAGAATTCACATTTTA+AGG | - | chr7.4:92953873-92953892 | None:intergenic | 30.0% |
| !! | CTTAGAAACGGTTTTTGATT+AGG | - | chr7.4:92951682-92951701 | None:intergenic | 30.0% |
| !!! | TTTTTTGTCAAGTAGTCTAG+TGG | - | chr7.4:92953893-92953912 | None:intergenic | 30.0% |
| AAAATCCAAGACCAACAAGA+GGG | + | chr7.4:92954050-92954069 | MS.gene54415:CDS | 35.0% | |
| AATTACACCACCAACAACAA+GGG | - | chr7.4:92951226-92951245 | None:intergenic | 35.0% | |
| AGTGAAGGTTGCCATTAATT+TGG | - | chr7.4:92951766-92951785 | None:intergenic | 35.0% | |
| ATATGAGGGAATACCTGTAT+TGG | + | chr7.4:92952145-92952164 | MS.gene54415:CDS | 35.0% | |
| CTTTATTCTATTCGCTCACA+AGG | - | chr7.4:92953338-92953357 | None:intergenic | 35.0% | |
| GAGGGAAATGGTAATTAGAA+TGG | - | chr7.4:92953633-92953652 | None:intergenic | 35.0% | |
| GGATAAACAATAGAACCAAG+TGG | + | chr7.4:92953119-92953138 | MS.gene54415:intron | 35.0% | |
| GTGATGTGATAGACAAAACA+AGG | + | chr7.4:92953499-92953518 | MS.gene54415:intron | 35.0% | |
| TACAGGTATTCCCTCATATT+AGG | - | chr7.4:92952144-92952163 | None:intergenic | 35.0% | |
| TTCAACTGCAGTCTTAGAAA+CGG | - | chr7.4:92951694-92951713 | None:intergenic | 35.0% | |
| TTCAATTGTCAACGAGAAAG+TGG | + | chr7.4:92954208-92954227 | MS.gene54415:CDS | 35.0% | |
| TTGATAAGTCAATTCACTGG+CGG | - | chr7.4:92952875-92952894 | None:intergenic | 35.0% | |
| ! | TCACTCATGTTTGTTGAACT+TGG | - | chr7.4:92953040-92953059 | None:intergenic | 35.0% |
| ! | TGTTGTTTAAGCAACCTTGT+AGG | + | chr7.4:92954092-92954111 | MS.gene54415:CDS | 35.0% |
| !! | CTTGGTATTGTTTTGTTCAG+TGG | + | chr7.4:92952273-92952292 | MS.gene54415:intron | 35.0% |
| !! | GATTTTGGATCCTTCTAAGA+TGG | - | chr7.4:92952032-92952051 | None:intergenic | 35.0% |
| !! | TCTTGGTGGGTTAACTATTT+GGG | - | chr7.4:92951343-92951362 | None:intergenic | 35.0% |
| !! | TTGCTGTTACATGCAACTTT+TGG | - | chr7.4:92951815-92951834 | None:intergenic | 35.0% |
| !!! | CACATTTTAAGGTGAGTAAG+TGG | - | chr7.4:92953862-92953881 | None:intergenic | 35.0% |
| !!! | TTCTAGGGTTTTTGACTTTG+TGG | + | chr7.4:92952072-92952091 | MS.gene54415:intron | 35.0% |
| AACAAAGAAGTCATCAACGG+TGG | + | chr7.4:92951303-92951322 | MS.gene54415:CDS | 40.0% | |
| ATATTAGGATCAGTAGGGCT+TGG | - | chr7.4:92952129-92952148 | None:intergenic | 40.0% | |
| CAATTACACCACCAACAACA+AGG | - | chr7.4:92951227-92951246 | None:intergenic | 40.0% | |
| CCCTACTGATCCTAATATGA+GGG | + | chr7.4:92952131-92952150 | MS.gene54415:CDS | 40.0% | |
| CCCTCATATTAGGATCAGTA+GGG | - | chr7.4:92952134-92952153 | None:intergenic | 40.0% | |
| CGGGCTATAGGACTTAAATT+TGG | - | chr7.4:92952855-92952874 | None:intergenic | 40.0% | |
| CTAATTGGGACCATCTTAGA+AGG | + | chr7.4:92952019-92952038 | MS.gene54415:intron | 40.0% | |
| GAAAATCCAAGACCAACAAG+AGG | + | chr7.4:92954049-92954068 | MS.gene54415:CDS | 40.0% | |
| GCTAATATAGTGTGCCTACA+AGG | - | chr7.4:92954109-92954128 | None:intergenic | 40.0% | |
| GTCTCTGAGTATAGATCAGT+TGG | + | chr7.4:92953782-92953801 | MS.gene54415:intron | 40.0% | |
| GTGGGTAAAGGTTACATACA+AGG | - | chr7.4:92951911-92951930 | None:intergenic | 40.0% | |
| TATACCAACCAGAGTGTGTA+GGG | - | chr7.4:92951394-92951413 | None:intergenic | 40.0% | |
| TATTGGATCGCTATACAGGA+TGG | + | chr7.4:92953658-92953677 | MS.gene54415:intron | 40.0% | |
| TCCCTCATATTAGGATCAGT+AGG | - | chr7.4:92952135-92952154 | None:intergenic | 40.0% | |
| TGATAAGTCAATTCACTGGC+GGG | - | chr7.4:92952874-92952893 | None:intergenic | 40.0% | |
| TTGAAATAGAGAGCAGCAAC+AGG | - | chr7.4:92954193-92954212 | None:intergenic | 40.0% | |
| TTTCCACCAACTTGAACTCT+TGG | - | chr7.4:92951360-92951379 | None:intergenic | 40.0% | |
| ! | GGGATTTTTCGTTATCCATG+TGG | - | chr7.4:92951939-92951958 | None:intergenic | 40.0% |
| !! | ATGAATTCCCTTGTTGTTGG+TGG | + | chr7.4:92951216-92951235 | MS.gene54415:CDS | 40.0% |
| !! | CTCTTGGTGGGTTAACTATT+TGG | - | chr7.4:92951344-92951363 | None:intergenic | 40.0% |
| !! | CTTCTAAGATGGTCCCAATT+AGG | - | chr7.4:92952021-92952040 | None:intergenic | 40.0% |
| !! | CTTGTTGTTGGTGGTGTAAT+TGG | + | chr7.4:92951225-92951244 | MS.gene54415:CDS | 40.0% |
| !!! | ATTTTTCAAGTGCCACAAGG+TGG | + | chr7.4:92951876-92951895 | MS.gene54415:intron | 40.0% |
| !!! | CTCATTTTTCAAGTGCCACA+AGG | + | chr7.4:92951873-92951892 | MS.gene54415:intron | 40.0% |
| !!! | GTTTTAGGGCCTCTTTTGTT+TGG | + | chr7.4:92952367-92952386 | MS.gene54415:intron | 40.0% |
| AACCCACCAAGAGTTCAAGT+TGG | + | chr7.4:92951351-92951370 | MS.gene54415:CDS | 45.0% | |
| AAGGTGAGTAAGTGGAGTGT+CGG | - | chr7.4:92953854-92953873 | None:intergenic | 45.0% | |
| ACACGATGAATCCCTCTTGT+TGG | - | chr7.4:92954064-92954083 | None:intergenic | 45.0% | |
| ACCAATATTCCAGCGACTAC+AGG | + | chr7.4:92953683-92953702 | MS.gene54415:CDS | 45.0% | |
| ACTTGGTCACATCTTGTGCA+TGG | - | chr7.4:92953023-92953042 | None:intergenic | 45.0% | |
| CACAGACACAAGAAACCACT+TGG | - | chr7.4:92953137-92953156 | None:intergenic | 45.0% | |
| CACCAACTTGAACTCTTGGT+GGG | - | chr7.4:92951356-92951375 | None:intergenic | 45.0% | |
| CCAATATTCCAGCGACTACA+GGG | + | chr7.4:92953684-92953703 | MS.gene54415:CDS | 45.0% | |
| GCCCTACTGATCCTAATATG+AGG | + | chr7.4:92952130-92952149 | MS.gene54415:CDS | 45.0% | |
| GTATACCAACCAGAGTGTGT+AGG | - | chr7.4:92951395-92951414 | None:intergenic | 45.0% | |
| GTTATCCATGTGGCAGTTGT+GGG | - | chr7.4:92951929-92951948 | None:intergenic | 45.0% | |
| TGTCAACGAGAAAGTGGTTC+CGG | + | chr7.4:92954214-92954233 | MS.gene54415:CDS | 45.0% | |
| TTGACTTTGTGGCACTTTGC+AGG | + | chr7.4:92952083-92952102 | MS.gene54415:intron | 45.0% | |
| ! | ATTCGCTCACAAGGTGTCTA+CGG | - | chr7.4:92953329-92953348 | None:intergenic | 45.0% |
| ! | TGAATCCCTCTTGTTGGTCT+TGG | - | chr7.4:92954058-92954077 | None:intergenic | 45.0% |
| !! | GGTGGGTTAACTATTTGGGA+CGG | - | chr7.4:92951339-92951358 | None:intergenic | 45.0% |
| !! | TTTCTATATAATTAAAAAAA+TGG | + | chr7.4:92952649-92952668 | MS.gene54415:intron | 5.0% |
| AATGTTGTCCCTGTAGTCGC+TGG | - | chr7.4:92953695-92953714 | None:intergenic | 50.0% | |
| AGAACCCTACACACTCTGGT+TGG | + | chr7.4:92951387-92951406 | MS.gene54415:intron | 50.0% | |
| CATGTGGCAGTTGTGGGTAA+AGG | - | chr7.4:92951923-92951942 | None:intergenic | 50.0% | |
| CCACCAACTTGAACTCTTGG+TGG | - | chr7.4:92951357-92951376 | None:intergenic | 50.0% | |
| CCCTGTAGTCGCTGGAATAT+TGG | - | chr7.4:92953687-92953706 | None:intergenic | 50.0% | |
| CGTTATCCATGTGGCAGTTG+TGG | - | chr7.4:92951930-92951949 | None:intergenic | 50.0% | |
| CTTTACCCACAACTGCCACA+TGG | + | chr7.4:92951921-92951940 | MS.gene54415:intron | 50.0% | |
| GCGACTACAGGGACAACATT+CGG | + | chr7.4:92953695-92953714 | MS.gene54415:CDS | 50.0% | |
| TTCAAGTGCCACAAGGTGGT+TGG | + | chr7.4:92951880-92951899 | MS.gene54415:intron | 50.0% | |
| TTGTGGCACTTTGCAGGTGA+TGG | + | chr7.4:92952089-92952108 | MS.gene54415:intron | 50.0% | |
| ! | AGGCTTTTCCAACCACCTTG+TGG | - | chr7.4:92951891-92951910 | None:intergenic | 50.0% |
| ! | AGGTGAGTAAGTGGAGTGTC+GGG | - | chr7.4:92953853-92953872 | None:intergenic | 50.0% |
| ! | CTGAAAGGCGCATGACCTTA+TGG | - | chr7.4:92951635-92951654 | None:intergenic | 50.0% |
| ! | TTCGCTCACAAGGTGTCTAC+GGG | - | chr7.4:92953328-92953347 | None:intergenic | 50.0% |
| !! | CCACCAAGAGTTCAAGTTGG+TGG | + | chr7.4:92951354-92951373 | MS.gene54415:CDS | 50.0% |
| !! | TCAATTCACTGGCGGGCTAT+AGG | - | chr7.4:92952867-92952886 | None:intergenic | 50.0% |
| AAAGTGGTTCCGGTGGAAGG+AGG | + | chr7.4:92954224-92954243 | MS.gene54415:CDS | 55.0% | |
| CAACGAGAAAGTGGTTCCGG+TGG | + | chr7.4:92954217-92954236 | MS.gene54415:CDS | 55.0% | |
| CCAGAGTGTGTAGGGTTCTC+AGG | - | chr7.4:92951386-92951405 | None:intergenic | 55.0% | |
| CCTGAGAACCCTACACACTC+TGG | + | chr7.4:92951383-92951402 | MS.gene54415:CDS | 55.0% | |
| GAGAAAGTGGTTCCGGTGGA+AGG | + | chr7.4:92954221-92954240 | MS.gene54415:CDS | 55.0% | |
| ! | CAAGGTGTCTACGGGATGGA+TGG | - | chr7.4:92953320-92953339 | None:intergenic | 55.0% |
| ! | CTCACAAGGTGTCTACGGGA+TGG | - | chr7.4:92953324-92953343 | None:intergenic | 55.0% |
| !! | CAGTAGGGCTTGGTGCATCA+GGG | - | chr7.4:92952119-92952138 | None:intergenic | 55.0% |
| !! | GATGGTTAGCCTCCTTCCAC+CGG | - | chr7.4:92954236-92954255 | None:intergenic | 55.0% |
| !! | GGTGAGTAAGTGGAGTGTCG+GGG | - | chr7.4:92953852-92953871 | None:intergenic | 55.0% |
| !! | TCAGTAGGGCTTGGTGCATC+AGG | - | chr7.4:92952120-92952139 | None:intergenic | 55.0% |
| !! | GAGTGTCGGGGTTCGAACAC+CGG | - | chr7.4:92953840-92953859 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 92951216 | 92954258 | 92951216 | ID=MS.gene54415 |
| chr7.4 | mRNA | 92951216 | 92954258 | 92951216 | ID=MS.gene54415.t1;Parent=MS.gene54415 |
| chr7.4 | exon | 92951216 | 92951404 | 92951216 | ID=MS.gene54415.t1.exon1;Parent=MS.gene54415.t1 |
| chr7.4 | CDS | 92951216 | 92951404 | 92951216 | ID=cds.MS.gene54415.t1;Parent=MS.gene54415.t1 |
| chr7.4 | exon | 92952105 | 92952166 | 92952105 | ID=MS.gene54415.t1.exon2;Parent=MS.gene54415.t1 |
| chr7.4 | CDS | 92952105 | 92952166 | 92952105 | ID=cds.MS.gene54415.t1;Parent=MS.gene54415.t1 |
| chr7.4 | exon | 92953676 | 92953716 | 92953676 | ID=MS.gene54415.t1.exon3;Parent=MS.gene54415.t1 |
| chr7.4 | CDS | 92953676 | 92953716 | 92953676 | ID=cds.MS.gene54415.t1;Parent=MS.gene54415.t1 |
| chr7.4 | exon | 92954029 | 92954258 | 92954029 | ID=MS.gene54415.t1.exon4;Parent=MS.gene54415.t1 |
| chr7.4 | CDS | 92954029 | 92954258 | 92954029 | ID=cds.MS.gene54415.t1;Parent=MS.gene54415.t1 |
| Gene Sequence |
| Protein sequence |
