Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63887.t1 | XP_024640147.1 | 98.1 | 672 | 13 | 0 | 1 | 672 | 1 | 672 | 0.00E+00 | 1206.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63887.t1 | Q9LK65 | 78.4 | 570 | 111 | 4 | 85 | 643 | 76 | 644 | 1.0e-226 | 787.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63887.t1 | A0A396HX71 | 98.1 | 672 | 13 | 0 | 1 | 672 | 1 | 672 | 0.0e+00 | 1206.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene63887 | 0.845436 | 4.07E-59 | -1.69E-46 |
| MS.gene049178 | MS.gene63887 | 0.823261 | 1.52E-53 | -1.69E-46 |
| MS.gene04917 | MS.gene63887 | 0.839816 | 1.26E-57 | -1.69E-46 |
| MS.gene049297 | MS.gene63887 | 0.801821 | 7.52E-49 | -1.69E-46 |
| MS.gene049378 | MS.gene63887 | 0.87489 | 4.74E-68 | -1.69E-46 |
| MS.gene049382 | MS.gene63887 | 0.811091 | 8.33E-51 | -1.69E-46 |
| MS.gene049756 | MS.gene63887 | 0.811238 | 7.74E-51 | -1.69E-46 |
| MS.gene049758 | MS.gene63887 | 0.852352 | 4.88E-61 | -1.69E-46 |
| MS.gene04984 | MS.gene63887 | 0.860445 | 2.06E-63 | -1.69E-46 |
| MS.gene04991 | MS.gene63887 | -0.827791 | 1.29E-54 | -1.69E-46 |
| MS.gene050114 | MS.gene63887 | 0.835352 | 1.76E-56 | -1.69E-46 |
| MS.gene050226 | MS.gene63887 | 0.865485 | 5.71E-65 | -1.69E-46 |
| MS.gene050227 | MS.gene63887 | 0.870578 | 1.31E-66 | -1.69E-46 |
| MS.gene050228 | MS.gene63887 | 0.86443 | 1.22E-64 | -1.69E-46 |
| MS.gene050442 | MS.gene63887 | 0.822957 | 1.79E-53 | -1.69E-46 |
| MS.gene050623 | MS.gene63887 | -0.876124 | 1.79E-68 | -1.69E-46 |
| MS.gene050629 | MS.gene63887 | -0.83837 | 2.99E-57 | -1.69E-46 |
| MS.gene050642 | MS.gene63887 | 0.822529 | 2.26E-53 | -1.69E-46 |
| MS.gene050719 | MS.gene63887 | 0.822158 | 2.75E-53 | -1.69E-46 |
| MS.gene050721 | MS.gene63887 | 0.821439 | 4.03E-53 | -1.69E-46 |
| MS.gene050724 | MS.gene63887 | 0.80604 | 9.98E-50 | -1.69E-46 |
| MS.gene050762 | MS.gene63887 | 0.893649 | 5.16E-75 | -1.69E-46 |
| MS.gene050763 | MS.gene63887 | 0.895377 | 1.02E-75 | -1.69E-46 |
| MS.gene050824 | MS.gene63887 | 0.816044 | 6.77E-52 | -1.69E-46 |
| MS.gene051210 | MS.gene63887 | 0.830256 | 3.25E-55 | -1.69E-46 |
| MS.gene051662 | MS.gene63887 | 0.816889 | 4.38E-52 | -1.69E-46 |
| MS.gene051663 | MS.gene63887 | 0.827964 | 1.17E-54 | -1.69E-46 |
| MS.gene051790 | MS.gene63887 | 0.806575 | 7.70E-50 | -1.69E-46 |
| MS.gene051860 | MS.gene63887 | 0.820866 | 5.47E-53 | -1.69E-46 |
| MS.gene051983 | MS.gene63887 | 0.813303 | 2.74E-51 | -1.69E-46 |
| MS.gene052077 | MS.gene63887 | 0.803669 | 3.12E-49 | -1.69E-46 |
| MS.gene052256 | MS.gene63887 | 0.80034 | 1.51E-48 | -1.69E-46 |
| MS.gene052302 | MS.gene63887 | 0.800938 | 1.14E-48 | -1.69E-46 |
| MS.gene052376 | MS.gene63887 | 0.807716 | 4.41E-50 | -1.69E-46 |
| MS.gene052665 | MS.gene63887 | 0.810799 | 9.63E-51 | -1.69E-46 |
| MS.gene052856 | MS.gene63887 | 0.837882 | 4.00E-57 | -1.69E-46 |
| MS.gene052858 | MS.gene63887 | 0.810099 | 1.36E-50 | -1.69E-46 |
| MS.gene052860 | MS.gene63887 | 0.803588 | 3.24E-49 | -1.69E-46 |
| MS.gene052896 | MS.gene63887 | 0.806586 | 7.65E-50 | -1.69E-46 |
| MS.gene053381 | MS.gene63887 | 0.812584 | 3.94E-51 | -1.69E-46 |
| MS.gene053811 | MS.gene63887 | 0.816519 | 5.30E-52 | -1.69E-46 |
| MS.gene053836 | MS.gene63887 | 0.850505 | 1.63E-60 | -1.69E-46 |
| MS.gene054379 | MS.gene63887 | 0.884284 | 2.19E-71 | -1.69E-46 |
| MS.gene054468 | MS.gene63887 | 0.822196 | 2.70E-53 | -1.69E-46 |
| MS.gene054473 | MS.gene63887 | 0.811155 | 8.06E-51 | -1.69E-46 |
| MS.gene054930 | MS.gene63887 | 0.851578 | 8.10E-61 | -1.69E-46 |
| MS.gene054942 | MS.gene63887 | 0.821078 | 4.89E-53 | -1.69E-46 |
| MS.gene055422 | MS.gene63887 | 0.801806 | 7.57E-49 | -1.69E-46 |
| MS.gene055816 | MS.gene63887 | -0.834982 | 2.19E-56 | -1.69E-46 |
| MS.gene056069 | MS.gene63887 | -0.811559 | 6.59E-51 | -1.69E-46 |
| MS.gene056400 | MS.gene63887 | 0.844229 | 8.60E-59 | -1.69E-46 |
| MS.gene056552 | MS.gene63887 | 0.827868 | 1.23E-54 | -1.69E-46 |
| MS.gene056875 | MS.gene63887 | 0.816204 | 6.24E-52 | -1.69E-46 |
| MS.gene056979 | MS.gene63887 | 0.819686 | 1.02E-52 | -1.69E-46 |
| MS.gene057360 | MS.gene63887 | 0.807676 | 4.50E-50 | -1.69E-46 |
| MS.gene05761 | MS.gene63887 | 0.81002 | 1.42E-50 | -1.69E-46 |
| MS.gene057665 | MS.gene63887 | 0.838605 | 2.60E-57 | -1.69E-46 |
| MS.gene057929 | MS.gene63887 | 0.816191 | 6.28E-52 | -1.69E-46 |
| MS.gene058182 | MS.gene63887 | 0.836201 | 1.07E-56 | -1.69E-46 |
| MS.gene058503 | MS.gene63887 | 0.811874 | 5.63E-51 | -1.69E-46 |
| MS.gene058639 | MS.gene63887 | 0.802425 | 5.64E-49 | -1.69E-46 |
| MS.gene058661 | MS.gene63887 | -0.819966 | 8.80E-53 | -1.69E-46 |
| MS.gene058758 | MS.gene63887 | 0.808461 | 3.06E-50 | -1.69E-46 |
| MS.gene059033 | MS.gene63887 | -0.81302 | 3.16E-51 | -1.69E-46 |
| MS.gene059713 | MS.gene63887 | 0.807488 | 4.93E-50 | -1.69E-46 |
| MS.gene059725 | MS.gene63887 | 0.801748 | 7.78E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene63887 | 0.818497 | 1.90E-52 | -1.69E-46 |
| MS.gene060084 | MS.gene63887 | 0.834331 | 3.19E-56 | -1.69E-46 |
| MS.gene060404 | MS.gene63887 | 0.832782 | 7.77E-56 | -1.69E-46 |
| MS.gene060637 | MS.gene63887 | 0.854542 | 1.15E-61 | -1.69E-46 |
| MS.gene060683 | MS.gene63887 | 0.819425 | 1.17E-52 | -1.69E-46 |
| MS.gene060685 | MS.gene63887 | 0.812537 | 4.03E-51 | -1.69E-46 |
| MS.gene060802 | MS.gene63887 | 0.800668 | 1.29E-48 | -1.69E-46 |
| MS.gene060869 | MS.gene63887 | 0.826102 | 3.26E-54 | -1.69E-46 |
| MS.gene060870 | MS.gene63887 | 0.802301 | 5.99E-49 | -1.69E-46 |
| MS.gene060998 | MS.gene63887 | 0.811299 | 7.50E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63887.t1 | MTR_5g094740 | 98.057 | 669 | 13 | 0 | 1 | 669 | 1 | 669 | 0.0 | 1343 |
| MS.gene63887.t1 | MTR_2g010520 | 25.954 | 262 | 163 | 10 | 220 | 471 | 72 | 312 | 1.73e-11 | 66.2 |
| MS.gene63887.t1 | MTR_2g010520 | 25.954 | 262 | 163 | 10 | 220 | 471 | 72 | 312 | 2.26e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63887.t1 | AT1G55930 | 68.645 | 657 | 180 | 11 | 1 | 649 | 1 | 639 | 0.0 | 877 |
| MS.gene63887.t1 | AT3G13070 | 76.491 | 570 | 122 | 4 | 85 | 643 | 76 | 644 | 0.0 | 852 |
| MS.gene63887.t1 | AT1G55930 | 70.000 | 600 | 155 | 10 | 1 | 592 | 1 | 583 | 0.0 | 818 |
Find 140 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAATTCTTCGTTTGTTTA+AGG | 0.144682 | 5.1:-75887257 | MS.gene63887:CDS |
| CTTAAATTGCTTGGCTTAAA+AGG | 0.171364 | 5.1:-75884753 | MS.gene63887:CDS |
| GTTTCTTCTCTTTCGGTTCC+TGG | 0.217823 | 5.1:+75880795 | None:intergenic |
| TTCCTCACAACCATACTTAT+TGG | 0.242888 | 5.1:-75886072 | MS.gene63887:CDS |
| ATTGTTATTGGCTTTGCTTT+TGG | 0.245514 | 5.1:-75887227 | MS.gene63887:CDS |
| CCTTCAGTAGCCAAAACTTT+AGG | 0.245516 | 5.1:+75887352 | None:intergenic |
| GAGAATGCCAATGAAGGTTT+TGG | 0.249627 | 5.1:-75887647 | MS.gene63887:CDS |
| ATGTCTTCATGTGGTCTCTT+TGG | 0.269483 | 5.1:+75880438 | None:intergenic |
| AAAATATGTTTCTTCTCTTT+CGG | 0.292690 | 5.1:+75880788 | None:intergenic |
| GACACTCGAATCAGGGGTTC+TGG | 0.292964 | 5.1:-75887731 | MS.gene63887:CDS |
| TAAGGAACAAGGATTGTTAT+TGG | 0.294468 | 5.1:-75887239 | MS.gene63887:CDS |
| CTTCAGTAGCCAAAACTTTA+GGG | 0.296810 | 5.1:+75887353 | None:intergenic |
| GTTTGTGGGGTGTTGGTGTT+TGG | 0.313415 | 5.1:-75887379 | MS.gene63887:CDS |
| CCTTTCAAGAACTAACTTGA+TGG | 0.314069 | 5.1:+75880856 | None:intergenic |
| AATGCTGGATATGGTGTTAT+TGG | 0.317649 | 5.1:-75887322 | MS.gene63887:CDS |
| AGCTTTCATCTTTCAAGTTA+TGG | 0.321638 | 5.1:-75887562 | MS.gene63887:CDS |
| GCAACGTGTTGATAATATAA+TGG | 0.324648 | 5.1:-75882728 | MS.gene63887:CDS |
| AATTGTTACCTTTCTTTCAA+TGG | 0.330333 | 5.1:-75884781 | MS.gene63887:CDS |
| GTTTGGATGCCCTAAAGTTT+TGG | 0.332563 | 5.1:-75887362 | MS.gene63887:CDS |
| CACCAATATGAGACGGTATC+AGG | 0.333419 | 5.1:-75880923 | MS.gene63887:CDS |
| GAAGTTTACAAATGAAGTTT+TGG | 0.355145 | 5.1:-75887431 | MS.gene63887:CDS |
| AAGTATCACAGTTGGAGATT+TGG | 0.355313 | 5.1:-75882556 | MS.gene63887:CDS |
| ATTGTTACCTTTCTTTCAAT+GGG | 0.363607 | 5.1:-75884780 | MS.gene63887:CDS |
| ATACGTTGTGCCAATAAGTA+TGG | 0.364028 | 5.1:+75886062 | None:intergenic |
| AGCTCCTCTTCAGTTACATA+TGG | 0.364332 | 5.1:+75883360 | None:intergenic |
| ATCTTGGCTGCTACTGTTTG+TGG | 0.365181 | 5.1:-75887394 | MS.gene63887:CDS |
| CGGTTCCTGGTGGTCACCAT+TGG | 0.365554 | 5.1:+75880808 | None:intergenic |
| GGCTTTGTATGTGAAGCCTT+TGG | 0.366515 | 5.1:-75880902 | MS.gene63887:CDS |
| TTTGTACCCAAAACCTTCAT+TGG | 0.380761 | 5.1:+75887640 | None:intergenic |
| TTAGCAATGACACTCGAATC+AGG | 0.381702 | 5.1:-75887739 | None:intergenic |
| TCTTGGCTGCTACTGTTTGT+GGG | 0.383049 | 5.1:-75887393 | MS.gene63887:CDS |
| TTGATGGTTTCTCCTGTCCT+TGG | 0.385943 | 5.1:+75880872 | None:intergenic |
| TTGCAGATTCAATGTCTGTT+TGG | 0.392142 | 5.1:-75882424 | MS.gene63887:intron |
| GCCAGTGGCATGGCTTTCTC+TGG | 0.399023 | 5.1:-75884823 | MS.gene63887:CDS |
| TTCTTAGAGAATTTCGAATC+AGG | 0.399483 | 5.1:-75882397 | MS.gene63887:CDS |
| TGCTACTGTTTGTGGGGTGT+TGG | 0.407645 | 5.1:-75887386 | MS.gene63887:CDS |
| ACTGCAGCATTCGGCGAAGC+TGG | 0.410977 | 5.1:-75885911 | MS.gene63887:CDS |
| CAACGTGTTGATAATATAAT+GGG | 0.420023 | 5.1:-75882727 | MS.gene63887:CDS |
| CACAGAAGTGGCTCGGTTTG+TGG | 0.421207 | 5.1:-75885001 | MS.gene63887:intron |
| GATTTCAGTGAGAAGCAAAA+TGG | 0.423188 | 5.1:+75885053 | None:intergenic |
| AGCAATAGAAGAGGAAGAAC+AGG | 0.424068 | 5.1:-75883304 | MS.gene63887:intron |
| TAATGAATATGTAGTTGATC+AGG | 0.426174 | 5.1:-75880412 | MS.gene63887:CDS |
| AAGCATCCCCATTGAAAGAA+AGG | 0.428833 | 5.1:+75884773 | None:intergenic |
| GCTGGTGTCAGCGCAGCAAC+AGG | 0.434643 | 5.1:-75885893 | MS.gene63887:CDS |
| AGCCTGATACCGTCTCATAT+TGG | 0.438335 | 5.1:+75880921 | None:intergenic |
| AGCATATGCGATGGATCTGC+TGG | 0.441250 | 5.1:-75882701 | MS.gene63887:CDS |
| GGTTCGTGAGTTGGCTGAAA+AGG | 0.443988 | 5.1:-75886142 | MS.gene63887:CDS |
| GGTGTGGTGAATGCTGGATA+TGG | 0.447491 | 5.1:-75887331 | MS.gene63887:CDS |
| GCTGAAAAGGAGTCTGAAAA+TGG | 0.450196 | 5.1:-75886129 | MS.gene63887:CDS |
| ATGGGGATGCTTAAATTGCT+TGG | 0.451732 | 5.1:-75884762 | MS.gene63887:CDS |
| ACTGAAGGTGTGGTGAATGC+TGG | 0.457072 | 5.1:-75887337 | MS.gene63887:CDS |
| GAAGCTGCAACTGCAGCATT+CGG | 0.461207 | 5.1:-75885920 | MS.gene63887:CDS |
| CAGTTGGACACAATAGGAAA+AGG | 0.462993 | 5.1:+75887607 | None:intergenic |
| ATGAGTATGGTGGAACTGTT+GGG | 0.464601 | 5.1:-75882349 | MS.gene63887:CDS |
| GGTGAAGAGAGGAATTATCT+TGG | 0.464775 | 5.1:-75887410 | MS.gene63887:CDS |
| ACACTCGAATCAGGGGTTCT+GGG | 0.470559 | 5.1:-75887730 | MS.gene63887:CDS |
| CTTCGTTTGTTTAAGGAACA+AGG | 0.470581 | 5.1:-75887250 | MS.gene63887:CDS |
| AGCTTGAAGGTGAAGTGTAT+TGG | 0.479042 | 5.1:-75887511 | MS.gene63887:CDS |
| TTTGTACGATTCTCATGCAC+AGG | 0.480881 | 5.1:+75887670 | None:intergenic |
| CCATCAAGTTAGTTCTTGAA+AGG | 0.481575 | 5.1:-75880856 | MS.gene63887:CDS |
| CCAACACAGTTGGACACAAT+AGG | 0.482123 | 5.1:+75887601 | None:intergenic |
| CATCAAGTTAGTTCTTGAAA+GGG | 0.483658 | 5.1:-75880855 | MS.gene63887:CDS |
| GCTGTCGTTCTTAATGAGTA+TGG | 0.485683 | 5.1:-75882362 | MS.gene63887:CDS |
| AAATATTGCAGCAACTGCTC+TGG | 0.490255 | 5.1:-75885948 | MS.gene63887:CDS |
| CGAGAAAGGTGAGTGCTGTT+CGG | 0.496101 | 5.1:-75880596 | MS.gene63887:CDS |
| CGATTACTACACTTTGGCCT+TGG | 0.498418 | 5.1:-75887171 | MS.gene63887:CDS |
| CCTATTGTGTCCAACTGTGT+TGG | 0.498989 | 5.1:-75887601 | MS.gene63887:CDS |
| AGCTCGCATTACTATGTAGC+CGG | 0.504772 | 5.1:+75881245 | None:intergenic |
| AGACTTCGATTACTACACTT+TGG | 0.504973 | 5.1:-75887177 | MS.gene63887:CDS |
| GATGTTGTTGAGGAAATTGT+TGG | 0.507415 | 5.1:-75881557 | MS.gene63887:CDS |
| GTCTTCTGAGAGTTGATCAA+TGG | 0.508494 | 5.1:+75881191 | None:intergenic |
| TACTACACTTTGGCCTTGGA+AGG | 0.509755 | 5.1:-75887167 | MS.gene63887:intron |
| GAGGAAATACAAAAGAAAAC+CGG | 0.512173 | 5.1:-75881264 | MS.gene63887:CDS |
| AAGGTAACAATTCTTCCTGC+AGG | 0.515803 | 5.1:+75884792 | None:intergenic |
| AGGAGCTAAAACTGATGCTA+AGG | 0.517603 | 5.1:-75883344 | MS.gene63887:CDS |
| TCTTTGACGCAGATACTAGC+AGG | 0.519145 | 5.1:-75880624 | MS.gene63887:intron |
| TGTAAACTTCAAATTAGCAT+CGG | 0.521085 | 5.1:+75887444 | None:intergenic |
| TACAAAGAGAATGCCAATGA+AGG | 0.521281 | 5.1:-75887653 | MS.gene63887:CDS |
| AATGAGTATGGTGGAACTGT+TGG | 0.522457 | 5.1:-75882350 | MS.gene63887:CDS |
| AGTTGGTGGAGCTAGCTTGA+AGG | 0.527234 | 5.1:-75887524 | MS.gene63887:CDS |
| ACTCTAGAAAGTATCACAGT+TGG | 0.529514 | 5.1:-75882564 | MS.gene63887:CDS |
| GAAGATGAGGCAGAGTATGA+TGG | 0.530442 | 5.1:-75880471 | MS.gene63887:CDS |
| TTTGGATACATTCCAAGGAC+AGG | 0.534270 | 5.1:-75880884 | MS.gene63887:CDS |
| AGTTGGACACAATAGGAAAA+GGG | 0.534542 | 5.1:+75887608 | None:intergenic |
| ACTAGCAGGAAATGCGAGAA+AGG | 0.534984 | 5.1:-75880610 | MS.gene63887:CDS |
| TCTAGGTCAGGCCAGTGGCA+TGG | 0.538250 | 5.1:-75884833 | MS.gene63887:intron |
| ACATAGTGGCGACGAAATGT+TGG | 0.539038 | 5.1:-75880562 | MS.gene63887:CDS |
| TAGCAATGACACTCGAATCA+GGG | 0.545433 | 5.1:-75887738 | None:intergenic |
| CTTGGCTGCTACTGTTTGTG+GGG | 0.549440 | 5.1:-75887392 | MS.gene63887:CDS |
| GGATATGATCGAAAATGTGT+TGG | 0.552369 | 5.1:-75882962 | MS.gene63887:CDS |
| AATAAGCATGATACCTTCCA+AGG | 0.560169 | 5.1:+75887154 | None:intergenic |
| ACCAGAGAAAGCCATGCCAC+TGG | 0.561580 | 5.1:+75884822 | None:intergenic |
| TTACCAGGTACAAAATATGC+AGG | 0.563099 | 5.1:+75882525 | None:intergenic |
| TGCTTGGCTTAAAAGGAAGT+AGG | 0.566558 | 5.1:-75884746 | MS.gene63887:intron |
| ATTGAAAGGGCCAACACAGT+TGG | 0.567652 | 5.1:+75887591 | None:intergenic |
| CTAAGGGGTGCAGAATTAAG+TGG | 0.568729 | 5.1:-75883327 | MS.gene63887:CDS |
| CGCAGCAACAGGAGTGATGA+CGG | 0.569783 | 5.1:-75885882 | MS.gene63887:intron |
| TCTCTGGTACTGTATCCTGC+AGG | 0.575131 | 5.1:-75884807 | MS.gene63887:CDS |
| TGACACCAATGGTGACCACC+AGG | 0.580712 | 5.1:-75880813 | MS.gene63887:CDS |
| GGAGCTAAAACTGATGCTAA+GGG | 0.580822 | 5.1:-75883343 | MS.gene63887:CDS |
| AAGGTGAAGTGTATTGGTAG+TGG | 0.586954 | 5.1:-75887505 | MS.gene63887:CDS |
| GGTTCATAATGCCACAGAAG+TGG | 0.592771 | 5.1:-75885013 | MS.gene63887:CDS |
| CTACATAGTAATGCGAGCTG+AGG | 0.595387 | 5.1:-75881241 | MS.gene63887:CDS |
| CGGTGAGGAATCTGAAGATG+AGG | 0.596245 | 5.1:-75880484 | MS.gene63887:CDS |
| TAGAGAATTTCGAATCAGGA+AGG | 0.597594 | 5.1:-75882393 | MS.gene63887:CDS |
| TCTGCTGGATTATGTCCAAA+AGG | 0.598511 | 5.1:-75882686 | MS.gene63887:intron |
| ATTAAGTGGAGCAATAGAAG+AGG | 0.604158 | 5.1:-75883313 | MS.gene63887:CDS |
| AAGCCTTTGGATACATTCCA+AGG | 0.604313 | 5.1:-75880889 | MS.gene63887:CDS |
| ATTCGATGAAAATGACTCGA+AGG | 0.605810 | 5.1:-75881528 | MS.gene63887:intron |
| TGAGCCATATGTAACTGAAG+AGG | 0.606858 | 5.1:-75883364 | MS.gene63887:CDS |
| ATAATGCCACAGAAGTGGCT+CGG | 0.609038 | 5.1:-75885008 | MS.gene63887:CDS |
| AATGGGTATAGCATATGCGA+TGG | 0.610921 | 5.1:-75882710 | MS.gene63887:CDS |
| AGCAATGACACTCGAATCAG+GGG | 0.613707 | 5.1:-75887737 | None:intergenic |
| TCATTAGAAATGTCTTCATG+TGG | 0.617541 | 5.1:+75880429 | None:intergenic |
| GCTTAAGAATACTTGGCCGA+CGG | 0.623933 | 5.1:-75887284 | MS.gene63887:CDS |
| CGGTTTGAAAGACTACATAG+TGG | 0.625252 | 5.1:-75880576 | MS.gene63887:CDS |
| GTCGTTCTTAATGAGTATGG+TGG | 0.629139 | 5.1:-75882359 | MS.gene63887:CDS |
| AACTCTTGAAGATGTTGTTG+AGG | 0.632860 | 5.1:-75881567 | MS.gene63887:CDS |
| TCTTCTCTTTCGGTTCCTGG+TGG | 0.632904 | 5.1:+75880798 | None:intergenic |
| ATTGCAACAACATCAACAAG+AGG | 0.634332 | 5.1:+75882904 | None:intergenic |
| TACTCCGAAGTGATGTTACT+CGG | 0.634521 | 5.1:-75886095 | MS.gene63887:CDS |
| TACATAGTAATGCGAGCTGA+GGG | 0.634796 | 5.1:-75881240 | MS.gene63887:CDS |
| TCGAATCAGGAAGGTTCACA+TGG | 0.635122 | 5.1:-75882384 | MS.gene63887:CDS |
| TGTCCTTGGAATGTATCCAA+AGG | 0.638487 | 5.1:+75880886 | None:intergenic |
| GGGTTACACATCAATACTCA+AGG | 0.641002 | 5.1:-75882843 | MS.gene63887:intron |
| TGCCAATAAGTATGGTTGTG+AGG | 0.646643 | 5.1:+75886070 | None:intergenic |
| CACAAACCGAGCCACTTCTG+TGG | 0.647516 | 5.1:+75885002 | None:intergenic |
| ACAAGTGATGAAAATCTACA+AGG | 0.660380 | 5.1:+75882866 | None:intergenic |
| TTGTTACCTTTCTTTCAATG+GGG | 0.663367 | 5.1:-75884779 | MS.gene63887:CDS |
| TCAGGGTCACCAATATGAGA+CGG | 0.666733 | 5.1:-75880930 | MS.gene63887:intron |
| CGAAGAATTTGCAACACCGT+CGG | 0.668231 | 5.1:+75887268 | None:intergenic |
| AAGAAAATGGAACAGCGGTG+AGG | 0.668773 | 5.1:-75880499 | MS.gene63887:CDS |
| GAGCTAAAACTGATGCTAAG+GGG | 0.682892 | 5.1:-75883342 | MS.gene63887:CDS |
| TTGTACGATTCTCATGCACA+GGG | 0.692351 | 5.1:+75887671 | None:intergenic |
| ATGACTCTAGGTCAGGCCAG+TGG | 0.700216 | 5.1:-75884838 | MS.gene63887:intron |
| GTGAAAAGAAAATGGAACAG+CGG | 0.706107 | 5.1:-75880504 | MS.gene63887:CDS |
| GATGACGACGATGACACCAA+TGG | 0.713116 | 5.1:-75880824 | MS.gene63887:CDS |
| TGAGTATGGTGGAACTGTTG+GGG | 0.713650 | 5.1:-75882348 | MS.gene63887:intron |
| CTTGAACATCAAGATGCCAG+AGG | 0.714743 | 5.1:-75881169 | MS.gene63887:intron |
| GGAACCGAGTAACATCACTT+CGG | 0.717695 | 5.1:+75886091 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 75880389 | 75887755 | 75880389 | ID=MS.gene63887 |
| chr5.1 | mRNA | 75880389 | 75887755 | 75880389 | ID=MS.gene63887.t1;Parent=MS.gene63887 |
| chr5.1 | exon | 75887168 | 75887755 | 75887168 | ID=MS.gene63887.t1.exon1;Parent=MS.gene63887.t1 |
| chr5.1 | CDS | 75887168 | 75887755 | 75887168 | ID=cds.MS.gene63887.t1;Parent=MS.gene63887.t1 |
| chr5.1 | exon | 75886066 | 75886163 | 75886066 | ID=MS.gene63887.t1.exon2;Parent=MS.gene63887.t1 |
| chr5.1 | CDS | 75886066 | 75886163 | 75886066 | ID=cds.MS.gene63887.t1;Parent=MS.gene63887.t1 |
| chr5.1 | exon | 75885883 | 75885976 | 75885883 | ID=MS.gene63887.t1.exon3;Parent=MS.gene63887.t1 |
| chr5.1 | CDS | 75885883 | 75885976 | 75885883 | ID=cds.MS.gene63887.t1;Parent=MS.gene63887.t1 |
| chr5.1 | exon | 75885002 | 75885079 | 75885002 | ID=MS.gene63887.t1.exon4;Parent=MS.gene63887.t1 |
| chr5.1 | CDS | 75885002 | 75885079 | 75885002 | ID=cds.MS.gene63887.t1;Parent=MS.gene63887.t1 |
| chr5.1 | exon | 75884747 | 75884850 | 75884747 | ID=MS.gene63887.t1.exon5;Parent=MS.gene63887.t1 |
| chr5.1 | CDS | 75884747 | 75884850 | 75884747 | ID=cds.MS.gene63887.t1;Parent=MS.gene63887.t1 |
| chr5.1 | exon | 75883305 | 75883386 | 75883305 | ID=MS.gene63887.t1.exon6;Parent=MS.gene63887.t1 |
| chr5.1 | CDS | 75883305 | 75883386 | 75883305 | ID=cds.MS.gene63887.t1;Parent=MS.gene63887.t1 |
| chr5.1 | exon | 75882844 | 75882983 | 75882844 | ID=MS.gene63887.t1.exon7;Parent=MS.gene63887.t1 |
| chr5.1 | CDS | 75882844 | 75882983 | 75882844 | ID=cds.MS.gene63887.t1;Parent=MS.gene63887.t1 |
| chr5.1 | exon | 75882687 | 75882765 | 75882687 | ID=MS.gene63887.t1.exon8;Parent=MS.gene63887.t1 |
| chr5.1 | CDS | 75882687 | 75882765 | 75882687 | ID=cds.MS.gene63887.t1;Parent=MS.gene63887.t1 |
| chr5.1 | exon | 75882529 | 75882592 | 75882529 | ID=MS.gene63887.t1.exon9;Parent=MS.gene63887.t1 |
| chr5.1 | CDS | 75882529 | 75882592 | 75882529 | ID=cds.MS.gene63887.t1;Parent=MS.gene63887.t1 |
| chr5.1 | exon | 75882349 | 75882440 | 75882349 | ID=MS.gene63887.t1.exon10;Parent=MS.gene63887.t1 |
| chr5.1 | CDS | 75882349 | 75882440 | 75882349 | ID=cds.MS.gene63887.t1;Parent=MS.gene63887.t1 |
| chr5.1 | exon | 75881529 | 75881594 | 75881529 | ID=MS.gene63887.t1.exon11;Parent=MS.gene63887.t1 |
| chr5.1 | CDS | 75881529 | 75881594 | 75881529 | ID=cds.MS.gene63887.t1;Parent=MS.gene63887.t1 |
| chr5.1 | exon | 75881170 | 75881286 | 75881170 | ID=MS.gene63887.t1.exon12;Parent=MS.gene63887.t1 |
| chr5.1 | CDS | 75881170 | 75881286 | 75881170 | ID=cds.MS.gene63887.t1;Parent=MS.gene63887.t1 |
| chr5.1 | exon | 75880778 | 75880948 | 75880778 | ID=MS.gene63887.t1.exon13;Parent=MS.gene63887.t1 |
| chr5.1 | CDS | 75880778 | 75880948 | 75880778 | ID=cds.MS.gene63887.t1;Parent=MS.gene63887.t1 |
| chr5.1 | exon | 75880389 | 75880634 | 75880389 | ID=MS.gene63887.t1.exon14;Parent=MS.gene63887.t1 |
| chr5.1 | CDS | 75880389 | 75880634 | 75880389 | ID=cds.MS.gene63887.t1;Parent=MS.gene63887.t1 |
| Gene Sequence |
| Protein sequence |
