AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene70247


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70247.t1 MTR_8g093250 98.202 445 8 0 1 445 1 445 0.0 899
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 136 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGGTTCCCTTCAAGATTT+TGG 0.069730 4.1:-8723248 MS.gene70247:CDS
CGCCTTTCTGCGCCCGGGCT+TGG 0.209663 4.1:-8722203 MS.gene70247:CDS
TGCTGAAGTTCTGGCATCTA+AGG 0.222981 4.1:-8721995 MS.gene70247:CDS
CTTCCTGATTGCTGAAGTTC+TGG 0.223414 4.1:-8722004 MS.gene70247:CDS
AAAAGGGACTCTGGTGGTTT+GGG 0.240265 4.1:-8723266 MS.gene70247:CDS
GACACATTAGAGGAAGTAAT+TGG 0.241899 4.1:-8723290 MS.gene70247:CDS
GAAAAGGGACTCTGGTGGTT+TGG 0.264666 4.1:-8723267 MS.gene70247:CDS
TTTGGTGGTTGCACTGGTTA+TGG 0.310624 4.1:-8724096 MS.gene70247:CDS
TTCTTTCACCTCAAATGGTT+GGG 0.316414 4.1:-8722124 MS.gene70247:CDS
TCGGCAGGGTGCAGATTTGA+TGG 0.362196 4.1:-8722318 MS.gene70247:intron
CCATGTGGCGGATATGTTGC+TGG 0.367862 4.1:-8722257 MS.gene70247:CDS
GCCGATGGAACCTTCATTGA+TGG 0.370185 4.1:-8721451 MS.gene70247:CDS
GCAGCGCGCCTTTCTGCGCC+CGG 0.376005 4.1:-8722209 MS.gene70247:CDS
ATTATTTCTTTCACCTCAAA+TGG 0.379919 4.1:-8722129 MS.gene70247:CDS
CCGAGGATGGTGGACTTGAC+TGG 0.385164 4.1:-8723123 MS.gene70247:CDS
CCAATTGCGGGTACCACTCC+TGG 0.392343 4.1:-8721627 MS.gene70247:CDS
ACTTCCTCTAATGTGTCATA+TGG 0.402174 4.1:+8723296 None:intergenic
ATTGCTTCCCCAACCATTTG+AGG 0.410807 4.1:+8722116 None:intergenic
ACCACAATCCACACCAAGCC+CGG 0.425545 4.1:+8722190 None:intergenic
TAGAGGAAGTAATTGGGAAA+AGG 0.426036 4.1:-8723283 MS.gene70247:CDS
AAATGCAGGGTGGCACTCAT+TGG 0.430241 4.1:-8721287 MS.gene70247:intron
CAGCACTTTGGTGGTTGCAC+TGG 0.435214 4.1:-8724102 MS.gene70247:CDS
TGGCACTCATTGGACTCAAT+GGG 0.438629 4.1:-8721277 MS.gene70247:CDS
AGAGGTCATGTGGTTATTCA+TGG 0.439010 4.1:-8723051 MS.gene70247:CDS
AGTGGTACCCGCAATTGGTT+TGG 0.441177 4.1:+8721632 None:intergenic
ATCAGCTATTGTTCGTTCAC+AGG 0.442751 4.1:-8724010 MS.gene70247:intron
GTGGCACTCATTGGACTCAA+TGG 0.444697 4.1:-8721278 MS.gene70247:CDS
AACCTGAACTGTATCACATC+GGG 0.445399 4.1:+8721942 None:intergenic
ATGCCAGAACTTCAGCAATC+AGG 0.447778 4.1:+8722001 None:intergenic
ACTTGTCAACAGTTCTTCTC+AGG 0.450400 4.1:-8723520 MS.gene70247:intron
GGTGAAATACCGAGAAGTTC+CGG 0.451794 4.1:-8723225 MS.gene70247:intron
CCAGGAGTGGTACCCGCAAT+TGG 0.455539 4.1:+8721627 None:intergenic
CAGCGCGCCTTTCTGCGCCC+GGG 0.457346 4.1:-8722208 MS.gene70247:CDS
AGAGGAAGTAATTGGGAAAA+GGG 0.458354 4.1:-8723282 MS.gene70247:CDS
GCCTGGCAAAATACAGCAAA+TGG 0.460230 4.1:+8721388 None:intergenic
TTTCTTTCACCTCAAATGGT+TGG 0.466714 4.1:-8722125 MS.gene70247:CDS
TCATACACCAAACCAATTGC+GGG 0.468084 4.1:-8721639 MS.gene70247:CDS
TTCTGCGCCCGGGCTTGGTG+TGG 0.471332 4.1:-8722198 MS.gene70247:CDS
TTATTTGCCCTCTTGAGGCC+AGG 0.474037 4.1:-8723475 MS.gene70247:CDS
CAGACCTCTGATGCATATCC+AGG 0.477506 4.1:+8721609 None:intergenic
TCTGGAACGAAGGGATTGAT+AGG 0.478948 4.1:+8725035 None:intergenic
TGCCTGTAGGCTGTACAACT+TGG 0.486368 4.1:-8721720 MS.gene70247:intron
CACCAAGCCCGGGCGCAGAA+AGG 0.488183 4.1:+8722201 None:intergenic
AGTTTGAGTGTTAATGACAT+AGG 0.488359 4.1:-8723022 MS.gene70247:CDS
TGCTCCATATGACACATTAG+AGG 0.492829 4.1:-8723300 MS.gene70247:CDS
GTGCTTTATTTGCCCTCTTG+AGG 0.493644 4.1:-8723480 MS.gene70247:CDS
GATGCAAAATCCTGAGTGTT+CGG 0.498240 4.1:-8722467 MS.gene70247:CDS
ATTTCACCCCAAAATCTTGA+AGG 0.501972 4.1:+8723240 None:intergenic
CAGGGTGCAGATTTGATGGC+GGG 0.503740 4.1:-8722314 MS.gene70247:CDS
GGTTATGGTCATGATGAAGC+TGG 0.503942 4.1:-8724081 MS.gene70247:CDS
TTTCATCAGCTTGCCGAGGA+TGG 0.507265 4.1:-8723136 MS.gene70247:intron
AATGGTTGGGGAAGCAATCA+AGG 0.508889 4.1:-8722111 MS.gene70247:intron
TGTTCAGAGAAGCTCTCCTG+TGG 0.510171 4.1:-8721664 MS.gene70247:CDS
AATGGTAGATGTTGTTGTAA+TGG 0.513262 4.1:+8725082 None:intergenic
TAATGCTGTCAGCACTTTGG+TGG 0.513811 4.1:-8724111 MS.gene70247:intron
CATCAGCTTGCCGAGGATGG+TGG 0.516636 4.1:-8723133 MS.gene70247:intron
GTCATGGTGGATAATTGCTA+TGG 0.519956 4.1:-8722445 MS.gene70247:CDS
TAGATTTCAGAACTTCTCCT+AGG 0.521668 4.1:+8721247 None:intergenic
GTTTGAGTGTTAATGACATA+GGG 0.522137 4.1:-8723021 MS.gene70247:CDS
GTTCAGAGAAGCTCTCCTGT+GGG 0.522769 4.1:-8721663 MS.gene70247:CDS
AGCGAGTACCTCTGGAACGA+AGG 0.525027 4.1:+8725025 None:intergenic
TTCTGAATGCAATGCATCAA+CGG 0.525308 4.1:+8724920 None:intergenic
ACACATTAGAGGAAGTAATT+GGG 0.527457 4.1:-8723289 MS.gene70247:CDS
CCAGTCAAGTCCACCATCCT+CGG 0.529194 4.1:+8723123 None:intergenic
TCTCAGGTTATCTTTGCCGA+TGG 0.530646 4.1:-8721466 MS.gene70247:intron
TCTTTCACCTCAAATGGTTG+GGG 0.531494 4.1:-8722123 MS.gene70247:CDS
AAAGGCTCTCATGATATCAC+CGG 0.531537 4.1:+8722160 None:intergenic
CCCGGGCTTGGTGTGGATTG+TGG 0.531980 4.1:-8722191 MS.gene70247:CDS
ACTCAATGGGGACTAGTCCT+AGG 0.534013 4.1:-8721264 MS.gene70247:CDS
GTGGATTGTGGTTCAACTCC+CGG 0.534401 4.1:-8722179 MS.gene70247:CDS
TCATGGTGGATAATTGCTAT+GGG 0.535135 4.1:-8722444 MS.gene70247:CDS
AAGTTCTGAAATCTATATGA+TGG 0.540257 4.1:-8721239 None:intergenic
CAAAATGTGCACTCATACAG+AGG 0.542723 4.1:-8723069 MS.gene70247:CDS
AGTAGCATACCGGAACTTCT+CGG 0.544340 4.1:+8723216 None:intergenic
GAGATTCGAACGGGATGCGT+AGG 0.544625 4.1:+8725104 None:intergenic
GTCATACACCAAACCAATTG+CGG 0.548656 4.1:-8721640 MS.gene70247:CDS
CCTCTTGAGGCCAGGAGATG+AGG 0.549373 4.1:-8723467 MS.gene70247:intron
CCACAATCCACACCAAGCCC+GGG 0.549428 4.1:+8722191 None:intergenic
GCTGAAGTTCTGGCATCTAA+GGG 0.550000 4.1:-8721994 MS.gene70247:CDS
TGTTAATGCTGTCAGCACTT+TGG 0.550318 4.1:-8724114 MS.gene70247:intron
AAAAGGGTTACCTCATCTCC+TGG 0.553149 4.1:+8723457 None:intergenic
ACTAGTACTTCCATCAATGA+AGG 0.556777 4.1:+8721441 None:intergenic
GTTATGGTCATGATGAAGCT+GGG 0.559133 4.1:-8724080 MS.gene70247:CDS
ACTAGTGAGCTTTCATGTGA+TGG 0.559350 4.1:-8721424 MS.gene70247:CDS
CCTCATCTCCTGGCCTCAAG+AGG 0.563110 4.1:+8723467 None:intergenic
GTAATTGGGAAAAGGGACTC+TGG 0.564622 4.1:-8723275 MS.gene70247:CDS
GGCAGTTTGATAAAGAATCC+TGG 0.564656 4.1:-8722293 MS.gene70247:CDS
GGCAAATAAAGCACATGTGA+TGG 0.565843 4.1:+8723489 None:intergenic
ACAGCAAATGGCTCTCTAAG+AGG 0.576106 4.1:+8721400 None:intergenic
ATATTATCGCATACCACCAT+GGG 0.576389 4.1:+8722397 None:intergenic
GTTGTAATGGAGATTCGAAC+GGG 0.577259 4.1:+8725095 None:intergenic
CATATTATCGCATACCACCA+TGG 0.578930 4.1:+8722396 None:intergenic
TTTCACCCCAAAATCTTGAA+GGG 0.581207 4.1:+8723241 None:intergenic
GCATTCAGAATTCAGAGCAG+TGG 0.587918 4.1:-8724907 MS.gene70247:CDS
GGGACGTGAAGCTCTTGACC+AGG 0.591339 4.1:-8724058 MS.gene70247:CDS
CATGGAGCAATCGTTCCACC+AGG 0.592431 4.1:+8722275 None:intergenic
TGTTGTAATGGAGATTCGAA+CGG 0.593925 4.1:+8725094 None:intergenic
CACTCCTGGATATGCATCAG+AGG 0.597649 4.1:-8721613 MS.gene70247:intron
CCAGCAACATATCCGCCACA+TGG 0.599034 4.1:+8722257 None:intergenic
GTGAAAAGCTTTAAGAACAC+GGG 0.600306 4.1:+8724860 None:intergenic
TCCATCAATGAAGGTTCCAT+CGG 0.600675 4.1:+8721450 None:intergenic
TATCAATCCCTTCGTTCCAG+AGG 0.600711 4.1:-8725033 MS.gene70247:intron
GCAGGGTGCAGATTTGATGG+CGG 0.604272 4.1:-8722315 MS.gene70247:intron
AAATCCTGAGTGTTCGGTCA+TGG 0.605022 4.1:-8722461 MS.gene70247:CDS
CATGTGGCGGATATGTTGCT+GGG 0.607387 4.1:-8722256 MS.gene70247:CDS
GAAGCGAGAGGCATAGCGAA+TGG 0.611375 4.1:+8725064 None:intergenic
TAATTGCTATGGGGAACTTG+TGG 0.611820 4.1:-8722434 MS.gene70247:CDS
TCCTGAGTGTTCGGTCATGG+TGG 0.614793 4.1:-8722458 MS.gene70247:CDS
CTCATCTCCTGGCCTCAAGA+GGG 0.618882 4.1:+8723468 None:intergenic
ATGCGTAGGATAAGCAGAGA+AGG 0.621133 4.1:+8725118 None:intergenic
TGCTATGGGGAACTTGTGGA+AGG 0.622880 4.1:-8722430 MS.gene70247:CDS
TTATGGTCATGATGAAGCTG+GGG 0.624757 4.1:-8724079 MS.gene70247:CDS
TTCAGAGAAGCTCTCCTGTG+GGG 0.632335 4.1:-8721662 MS.gene70247:CDS
TGTGAAAAGCTTTAAGAACA+CGG 0.632469 4.1:+8724859 None:intergenic
GGTTTGGTGTATGACCCCAC+AGG 0.633665 4.1:+8721648 None:intergenic
AAACCTGAACTGTATCACAT+CGG 0.634425 4.1:+8721941 None:intergenic
CTCTGATGCATATCCAGGAG+TGG 0.634582 4.1:+8721614 None:intergenic
GGAAGGCATTGAACCTCCCA+TGG 0.640149 4.1:-8722413 MS.gene70247:CDS
AAGGCTCTCATGATATCACC+GGG 0.640580 4.1:+8722161 None:intergenic
GCGAGTACCTCTGGAACGAA+GGG 0.641161 4.1:+8725026 None:intergenic
TCCACCATGACCGAACACTC+AGG 0.644287 4.1:+8722457 None:intergenic
CAGAACTTCAGCAATCAGGA+AGG 0.652209 4.1:+8722005 None:intergenic
GCACTCATACAGAGGTCATG+TGG 0.658940 4.1:-8723061 MS.gene70247:CDS
TTATCGCATACCACCATGGG+AGG 0.664402 4.1:+8722400 None:intergenic
GGAACGATTGCTCCATGTGG+CGG 0.666888 4.1:-8722269 MS.gene70247:CDS
GGCACTCATTGGACTCAATG+GGG 0.670357 4.1:-8721276 MS.gene70247:CDS
ATTGGGAAAAGGGACTCTGG+TGG 0.681378 4.1:-8723272 MS.gene70247:CDS
AAAAGCTTTAAGAACACGGG+TGG 0.682092 4.1:+8724863 None:intergenic
GATAGGAACAGAGAAGCGAG+AGG 0.690097 4.1:+8725052 None:intergenic
GGTGGAACGATTGCTCCATG+TGG 0.694007 4.1:-8722272 MS.gene70247:CDS
CCTGAACTGTATCACATCGG+GGG 0.701546 4.1:+8721944 None:intergenic
ACCTGAACTGTATCACATCG+GGG 0.703191 4.1:+8721943 None:intergenic
CATGGTGGATAATTGCTATG+GGG 0.706640 4.1:-8722443 MS.gene70247:CDS
TATGGTCATGATGAAGCTGG+GGG 0.710054 4.1:-8724078 MS.gene70247:CDS
AGGCATTGAACCTCCCATGG+TGG 0.710958 4.1:-8722410 MS.gene70247:intron
AGTTTGATAAAGAATCCTGG+TGG 0.766897 4.1:-8722290 MS.gene70247:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTATTCATTTACAAAA+CGG + chr4.1:8721596-8721615 None:intergenic 10.0%
!! ATATTAAGTTACTTATTAAT+AGG - chr4.1:8722416-8722435 MS.gene70247:CDS 10.0%
!! TATTAAGTTACTTATTAATA+GGG - chr4.1:8722417-8722436 MS.gene70247:CDS 10.0%
!!! ATTTTAGGTATTTATTTTTT+GGG - chr4.1:8721614-8721633 MS.gene70247:CDS 10.0%
!!! TATTTTAGGTATTTATTTTT+TGG - chr4.1:8721613-8721632 MS.gene70247:intron 10.0%
!!! TGTAAATGAATAATTATTTT+AGG - chr4.1:8721599-8721618 MS.gene70247:intron 10.0%
!!! TTTAAAGTTAATATTATTCA+AGG - chr4.1:8723449-8723468 MS.gene70247:intron 10.0%
!!! TTTTAATTTTGATTTTAAGT+TGG - chr4.1:8724511-8724530 MS.gene70247:intron 10.0%
!! AACTTAATATAAAGAAAACA+GGG + chr4.1:8722406-8722425 None:intergenic 15.0%
!! ATAGAATATTAGAAGAAAAA+AGG + chr4.1:8722942-8722961 None:intergenic 15.0%
!! ATTAAGTTACTTATTAATAG+GGG - chr4.1:8722418-8722437 MS.gene70247:CDS 15.0%
!! TAACTTAATATAAAGAAAAC+AGG + chr4.1:8722407-8722426 None:intergenic 15.0%
!! TAGAATATTAGAAGAAAAAA+GGG + chr4.1:8722941-8722960 None:intergenic 15.0%
!! TTCTAATAAAATGATAAATC+TGG + chr4.1:8724296-8724315 None:intergenic 15.0%
!!! AAAACATAATCAATTTGTTT+AGG + chr4.1:8724817-8724836 None:intergenic 15.0%
!!! AAACATAATCAATTTGTTTA+GGG + chr4.1:8724816-8724835 None:intergenic 15.0%
!!! ATACATTTTTTGCTTATATT+TGG - chr4.1:8724319-8724338 MS.gene70247:intron 15.0%
!!! TAAACAAATTGATTATGTTT+TGG - chr4.1:8724816-8724835 MS.gene70247:intron 15.0%
!!! TTCTGTTCTTTAATATTTTT+AGG + chr4.1:8723743-8723762 None:intergenic 15.0%
!! AATAAGCTAAAAATAGCTTA+TGG - chr4.1:8721774-8721793 MS.gene70247:intron 20.0%
!! AATACTAACAATGTTAACAT+TGG - chr4.1:8722528-8722547 MS.gene70247:intron 20.0%
!! ATCAAAGAGTTATTAATATC+TGG + chr4.1:8724885-8724904 None:intergenic 20.0%
!! ATTAACAAAACAACCAATTA+GGG + chr4.1:8722137-8722156 None:intergenic 20.0%
!! CAAAATTAAAAATCAGATAC+AGG + chr4.1:8724502-8724521 None:intergenic 20.0%
!! GTAATATTGAACATCATTTA+AGG + chr4.1:8724843-8724862 None:intergenic 20.0%
!! TAACTTATAATCAATTCTGA+AGG - chr4.1:8722722-8722741 MS.gene70247:intron 20.0%
!! TATAACTTGAAGCTATAATT+TGG + chr4.1:8722704-8722723 None:intergenic 20.0%
!! TATTAAAGAACAGAAAATAG+TGG - chr4.1:8723748-8723767 MS.gene70247:intron 20.0%
!! TTTGTGATCAGAAAAATTAT+AGG + chr4.1:8723856-8723875 None:intergenic 20.0%
!!! ATTTTCTGTATTCTTTACAA+GGG - chr4.1:8724349-8724368 MS.gene70247:intron 20.0%
!!! TAATATTTTTAGGTCACAAA+AGG + chr4.1:8723733-8723752 None:intergenic 20.0%
!!! TTTTTTATCAACAGAATTAC+TGG - chr4.1:8723679-8723698 MS.gene70247:intron 20.0%
! AAACATTGGATATATAAGAG+AGG - chr4.1:8721953-8721972 MS.gene70247:CDS 25.0%
! AACATTGGATATATAAGAGA+GGG - chr4.1:8721954-8721973 MS.gene70247:CDS 25.0%
! AAGAAATAATCCCTGAAAAA+AGG + chr4.1:8724240-8724259 None:intergenic 25.0%
! AAGAAATATTAGTAGCATAC+CGG + chr4.1:8723176-8723195 None:intergenic 25.0%
! AAGAGTTATTAATATCTGGT+AGG + chr4.1:8724881-8724900 None:intergenic 25.0%
! ACATTGTTAGTATTATATGC+TGG + chr4.1:8722522-8722541 None:intergenic 25.0%
! AGCAATAGTATACTATATAC+AGG - chr4.1:8725031-8725050 MS.gene70247:intron 25.0%
! CATTAACAAAACAACCAATT+AGG + chr4.1:8722138-8722157 None:intergenic 25.0%
! CATTGGCGATTTAAATAAAA+AGG - chr4.1:8722545-8722564 MS.gene70247:intron 25.0%
! CATTGTTAGTATTATATGCT+GGG + chr4.1:8722521-8722540 None:intergenic 25.0%
! TATAGCTTCTACTAGTATTA+TGG + chr4.1:8723557-8723576 None:intergenic 25.0%
! TTATCTATTAGCATAAGCAT+TGG + chr4.1:8721843-8721862 None:intergenic 25.0%
! TTGAATATGTAACTGGAATA+AGG - chr4.1:8723015-8723034 MS.gene70247:CDS 25.0%
!! AGAAGCTATATTGATTGTTA+GGG - chr4.1:8723567-8723586 MS.gene70247:intron 25.0%
!! ATTATTTCTTTCACCTCAAA+TGG - chr4.1:8724250-8724269 MS.gene70247:intron 25.0%
!! GATTTTCTGTATTCTTTACA+AGG - chr4.1:8724348-8724367 MS.gene70247:intron 25.0%
!! TAGAAGCTATATTGATTGTT+AGG - chr4.1:8723566-8723585 MS.gene70247:intron 25.0%
!! TATTATGGACTTTTAGATCA+GGG + chr4.1:8723542-8723561 None:intergenic 25.0%
AATGGTAGATGTTGTTGTAA+TGG + chr4.1:8721300-8721319 None:intergenic 30.0%
AATTAAGGAGTGAAGTGATA+AGG - chr4.1:8722473-8722492 MS.gene70247:intron 30.0%
ACACATTAGAGGAAGTAATT+GGG - chr4.1:8723090-8723109 MS.gene70247:CDS 30.0%
ACATTGGATATATAAGAGAG+GGG - chr4.1:8721955-8721974 MS.gene70247:CDS 30.0%
ACTTATTAATAGGGGATATG+AGG - chr4.1:8722426-8722445 MS.gene70247:CDS 30.0%
AGTTTGAGTGTTAATGACAT+AGG - chr4.1:8723357-8723376 MS.gene70247:intron 30.0%
ATAGTATGCAAGTGTATGTT+TGG + chr4.1:8722835-8722854 None:intergenic 30.0%
ATTAAGGAGTGAAGTGATAA+GGG - chr4.1:8722474-8722493 MS.gene70247:intron 30.0%
ATTAATATCTGGTAGGACTT+TGG + chr4.1:8724874-8724893 None:intergenic 30.0%
ATTCCAGTTACATATTCAAC+AGG + chr4.1:8723014-8723033 None:intergenic 30.0%
GAATAAAGCAATACATACTG+CGG + chr4.1:8724009-8724028 None:intergenic 30.0%
GCAACAAAATTAAGTCTGAA+TGG + chr4.1:8721422-8721441 None:intergenic 30.0%
GTTTGAGTGTTAATGACATA+GGG - chr4.1:8723358-8723377 MS.gene70247:intron 30.0%
TATCACATTTCTACATTCGT+CGG - chr4.1:8724042-8724061 MS.gene70247:CDS 30.0%
TCAAATAAGACAATCCAAAC+AGG - chr4.1:8721865-8721884 MS.gene70247:intron 30.0%
TTCCAGTTACATATTCAACA+GGG + chr4.1:8723013-8723032 None:intergenic 30.0%
! ACTTAATTTTGTTGCAATGC+AGG - chr4.1:8721427-8721446 MS.gene70247:CDS 30.0%
! AGATTCTTAGTTGTGCTTTT+TGG - chr4.1:8723405-8723424 MS.gene70247:intron 30.0%
! ATAAAGACCAATGTGTTGTT+AGG + chr4.1:8722077-8722096 None:intergenic 30.0%
! ATAAAGACCAATGTGTTGTT+GGG + chr4.1:8722077-8722096 None:intergenic 30.0%
! ATTATGTTTTCTCCCAAAAG+TGG - chr4.1:8722807-8722826 MS.gene70247:intron 30.0%
! ATTTTGCATCTGAACATTGA+AGG + chr4.1:8723902-8723921 None:intergenic 30.0%
! CTAATATAGCTATCAGCTTT+TGG - chr4.1:8723046-8723065 MS.gene70247:CDS 30.0%
! GTATGTATTGCTTTATTCCA+AGG - chr4.1:8724011-8724030 MS.gene70247:CDS 30.0%
! GTATTATGGACTTTTAGATC+AGG + chr4.1:8723543-8723562 None:intergenic 30.0%
! TAAAGACCAATGTGTTGTTA+GGG + chr4.1:8722191-8722210 None:intergenic 30.0%
! TTTTGCATCTGAACATTGAA+GGG + chr4.1:8723901-8723920 None:intergenic 30.0%
!! GCTGTTTTCATAAGCTATTT+TGG - chr4.1:8721739-8721758 MS.gene70247:intron 30.0%
!! TATGAGTGCACATTTTGTTT+CGG + chr4.1:8723307-8723326 None:intergenic 30.0%
!! TCATTTGTTTTCCAAATGCA+GGG - chr4.1:8725079-8725098 MS.gene70247:CDS 30.0%
!! TGTGAAAAGCTTTAAGAACA+CGG + chr4.1:8721523-8721542 None:intergenic 30.0%
!! TGTTGTTTCTATAAGCTCTT+CGG - chr4.1:8721807-8721826 MS.gene70247:intron 30.0%
!! TTCATTTGTTTTCCAAATGC+AGG - chr4.1:8725078-8725097 MS.gene70247:CDS 30.0%
!!! ATTCGTATTTTAACTCACAC+AGG + chr4.1:8723487-8723506 None:intergenic 30.0%
!!! CTTTTAAAGTATGAGCGTTA+GGG - chr4.1:8723785-8723804 MS.gene70247:intron 30.0%
AAACCTGAACTGTATCACAT+CGG + chr4.1:8724441-8724460 None:intergenic 35.0%
AATTGATCTTCAATGCCTGT+AGG - chr4.1:8724646-8724665 MS.gene70247:intron 35.0%
ACTAGTACTTCCATCAATGA+AGG + chr4.1:8724941-8724960 None:intergenic 35.0%
ACTTCCTCTAATGTGTCATA+TGG + chr4.1:8723086-8723105 None:intergenic 35.0%
AGAGGAAGTAATTGGGAAAA+GGG - chr4.1:8723097-8723116 MS.gene70247:CDS 35.0%
AGTTTGATAAAGAATCCTGG+TGG - chr4.1:8724089-8724108 MS.gene70247:CDS 35.0%
ATACTGAAAGAAACTCCTAC+GGG + chr4.1:8724592-8724611 None:intergenic 35.0%
ATATTATCGCATACCACCAT+GGG + chr4.1:8723985-8724004 None:intergenic 35.0%
ATTAATAGGGGATATGAGGT+TGG - chr4.1:8722430-8722449 MS.gene70247:CDS 35.0%
ATTTCACCCCAAAATCTTGA+AGG + chr4.1:8723142-8723161 None:intergenic 35.0%
CAATCTAAACATGCCCTAAT+TGG - chr4.1:8722121-8722140 MS.gene70247:CDS 35.0%
CATAAAGACCAATGTGTTGT+TGG + chr4.1:8722078-8722097 None:intergenic 35.0%
CATACTGAAAGAAACTCCTA+CGG + chr4.1:8724593-8724612 None:intergenic 35.0%
CTGAACATTGAAGGGTAAAA+AGG + chr4.1:8723893-8723912 None:intergenic 35.0%
GACACATTAGAGGAAGTAAT+TGG - chr4.1:8723089-8723108 MS.gene70247:CDS 35.0%
TAGAGGAAGTAATTGGGAAA+AGG - chr4.1:8723096-8723115 MS.gene70247:CDS 35.0%
TAGATTTCAGAACTTCTCCT+AGG + chr4.1:8725135-8725154 None:intergenic 35.0%
TCTAGAAAGAATGATAGCAC+AGG + chr4.1:8724474-8724493 None:intergenic 35.0%
TCTTTGATATCACTCTTCTC+AGG - chr4.1:8724897-8724916 MS.gene70247:CDS 35.0%
TGTTGCTGGGAAAAAGAAAT+TGG - chr4.1:8724136-8724155 MS.gene70247:intron 35.0%
TTAAGGAGTGAAGTGATAAG+GGG - chr4.1:8722475-8722494 MS.gene70247:intron 35.0%
TTCCCTGTTGAATATGTAAC+TGG - chr4.1:8723008-8723027 MS.gene70247:CDS 35.0%
TTCTGAATGCAATGCATCAA+CGG + chr4.1:8721462-8721481 None:intergenic 35.0%
TTCTTTCACCTCAAATGGTT+GGG - chr4.1:8724255-8724274 MS.gene70247:intron 35.0%
TTGAAGGGTAAAAAGGTTAC+AGG + chr4.1:8723886-8723905 None:intergenic 35.0%
TTTCACCCCAAAATCTTGAA+GGG + chr4.1:8723141-8723160 None:intergenic 35.0%
TTTCTTTCACCTCAAATGGT+TGG - chr4.1:8724254-8724273 MS.gene70247:intron 35.0%
! AATTTGTTTAGGGACTGTGA+AGG + chr4.1:8724806-8724825 None:intergenic 35.0%
! ACCTTAAGGCATTAGGTATA+TGG + chr4.1:8721983-8722002 None:intergenic 35.0%
! ACTCAAAACCTTAAGGCATT+AGG + chr4.1:8721990-8722009 None:intergenic 35.0%
! CAACAATTTCTGAAAAAGCC+TGG + chr4.1:8722342-8722361 None:intergenic 35.0%
! CCTTAAGGCATTAGGTATAT+GGG + chr4.1:8721982-8722001 None:intergenic 35.0%
! TAAAGACCAATGTGTTGTTG+GGG + chr4.1:8722076-8722095 None:intergenic 35.0%
! TGTTGTAATGGAGATTCGAA+CGG + chr4.1:8721288-8721307 None:intergenic 35.0%
!! ATGAGTGCACATTTTGTTTC+GGG + chr4.1:8723306-8723325 None:intergenic 35.0%
!! GTATGTTTGGTTCCACTTTT+GGG + chr4.1:8722822-8722841 None:intergenic 35.0%
!! GTGAAAAGCTTTAAGAACAC+GGG + chr4.1:8721522-8721541 None:intergenic 35.0%
!! TCATGGTGGATAATTGCTAT+GGG - chr4.1:8723935-8723954 MS.gene70247:intron 35.0%
!! TGTATGTTTGGTTCCACTTT+TGG + chr4.1:8722823-8722842 None:intergenic 35.0%
!!! ATCATGAGAGCCTTTTTTCA+GGG - chr4.1:8724227-8724246 MS.gene70247:intron 35.0%
!!! CAGGCTTTTTCAGAAATTGT+TGG - chr4.1:8722340-8722359 MS.gene70247:intron 35.0%
!!! GCTTTTAAAGTATGAGCGTT+AGG - chr4.1:8723784-8723803 MS.gene70247:intron 35.0%
!!! TAATGCCTTAAGGTTTTGAG+TGG - chr4.1:8721989-8722008 MS.gene70247:CDS 35.0%
!!! TATCATGAGAGCCTTTTTTC+AGG - chr4.1:8724226-8724245 MS.gene70247:intron 35.0%
AAAGGCTCTCATGATATCAC+CGG + chr4.1:8724222-8724241 None:intergenic 40.0%
AACCTGAACTGTATCACATC+GGG + chr4.1:8724440-8724459 None:intergenic 40.0%
AATGTGATACTGCACATCCT+TGG + chr4.1:8724031-8724050 None:intergenic 40.0%
ACTAGTGAGCTTTCATGTGA+TGG - chr4.1:8724955-8724974 MS.gene70247:intron 40.0%
ACTTGTCAACAGTTCTTCTC+AGG - chr4.1:8722859-8722878 MS.gene70247:intron 40.0%
AGAGGTCATGTGGTTATTCA+TGG - chr4.1:8723328-8723347 MS.gene70247:intron 40.0%
AGGTCACAAAAGGAATCAGT+TGG + chr4.1:8723723-8723742 None:intergenic 40.0%
AGTATTATATGCTGGGAGTG+TGG + chr4.1:8722514-8722533 None:intergenic 40.0%
ATCAGCTATTGTTCGTTCAC+AGG - chr4.1:8722369-8722388 MS.gene70247:intron 40.0%
CAAAATGTGCACTCATACAG+AGG - chr4.1:8723310-8723329 MS.gene70247:CDS 40.0%
CAACTATAGAGCTATACTGC+TGG + chr4.1:8722980-8722999 None:intergenic 40.0%
CATATTATCGCATACCACCA+TGG + chr4.1:8723986-8724005 None:intergenic 40.0%
CATCTCCACTCAAAACCTTA+AGG + chr4.1:8721997-8722016 None:intergenic 40.0%
CCCATATACCTAATGCCTTA+AGG - chr4.1:8721979-8721998 MS.gene70247:CDS 40.0%
GATGCAAAATCCTGAGTGTT+CGG - chr4.1:8723912-8723931 MS.gene70247:intron 40.0%
GATGTGGTGTCTAAGTTTCT+TGG - chr4.1:8722013-8722032 MS.gene70247:intron 40.0%
GATTATATCCCACATGGACT+CGG - chr4.1:8721922-8721941 MS.gene70247:intron 40.0%
GGCAAATAAAGCACATGTGA+TGG + chr4.1:8722893-8722912 None:intergenic 40.0%
GGCAGTTTGATAAAGAATCC+TGG - chr4.1:8724086-8724105 MS.gene70247:CDS 40.0%
GTCATACACCAAACCAATTG+CGG - chr4.1:8724739-8724758 MS.gene70247:intron 40.0%
GTGAGTGATTATATCCCACA+TGG - chr4.1:8721916-8721935 MS.gene70247:intron 40.0%
GTTATGGTCATGATGAAGCT+GGG - chr4.1:8722299-8722318 MS.gene70247:CDS 40.0%
TAATTGCTATGGGGAACTTG+TGG - chr4.1:8723945-8723964 MS.gene70247:intron 40.0%
TCATACACCAAACCAATTGC+GGG - chr4.1:8724740-8724759 MS.gene70247:intron 40.0%
TCCATCAATGAAGGTTCCAT+CGG + chr4.1:8724932-8724951 None:intergenic 40.0%
TCTTTCACCTCAAATGGTTG+GGG - chr4.1:8724256-8724275 MS.gene70247:intron 40.0%
TGCTCCATATGACACATTAG+AGG - chr4.1:8723079-8723098 MS.gene70247:CDS 40.0%
TGTTAATGCTGTCAGCACTT+TGG - chr4.1:8722265-8722284 MS.gene70247:CDS 40.0%
TTAACTCACACAGGTCACAA+TGG + chr4.1:8723478-8723497 None:intergenic 40.0%
TTATGGTCATGATGAAGCTG+GGG - chr4.1:8722300-8722319 MS.gene70247:CDS 40.0%
! AGAAAAGCTGTGGTTGATGT+GGG - chr4.1:8724555-8724574 MS.gene70247:intron 40.0%
! GTTGTAATGGAGATTCGAAC+GGG + chr4.1:8721287-8721306 None:intergenic 40.0%
! TAGAAAAGCTGTGGTTGATG+TGG - chr4.1:8724554-8724573 MS.gene70247:intron 40.0%
! TGGGTTCCCTTCAAGATTTT+GGG - chr4.1:8723132-8723151 MS.gene70247:intron 40.0%
! TTGGGTTCCCTTCAAGATTT+TGG - chr4.1:8723131-8723150 MS.gene70247:intron 40.0%
!! AAAAGCTTTAAGAACACGGG+TGG + chr4.1:8721519-8721538 None:intergenic 40.0%
!! CATGGTGGATAATTGCTATG+GGG - chr4.1:8723936-8723955 MS.gene70247:intron 40.0%
!! GTCATGGTGGATAATTGCTA+TGG - chr4.1:8723934-8723953 MS.gene70247:intron 40.0%
!! TGGCAGCGAAATTTTGTTTC+TGG - chr4.1:8724531-8724550 MS.gene70247:intron 40.0%
!! TGTTTCTGGTAGAAAAGCTG+TGG - chr4.1:8724545-8724564 MS.gene70247:intron 40.0%
!! TTTGTTTTCCAAATGCAGGG+TGG - chr4.1:8725082-8725101 MS.gene70247:CDS 40.0%
!!! ATTTTTTCATCAGCTTGCCG+AGG - chr4.1:8723239-8723258 MS.gene70247:CDS 40.0%
!!! TAAGGTTTTGAGTGGAGATG+TGG - chr4.1:8721997-8722016 MS.gene70247:CDS 40.0%
!!! TACAGCAGTCTTGTTTTGCA+TGG - chr4.1:8723652-8723671 MS.gene70247:intron 40.0%
AAAAAGCAAGGAGACGCTCA+CGG + chr4.1:8724688-8724707 None:intergenic 45.0%
AAAAGGGACTCTGGTGGTTT+GGG - chr4.1:8723113-8723132 MS.gene70247:CDS 45.0%
AAAAGGGTTACCTCATCTCC+TGG + chr4.1:8722925-8722944 None:intergenic 45.0%
AAATCCTGAGTGTTCGGTCA+TGG - chr4.1:8723918-8723937 MS.gene70247:intron 45.0%
AAGGCTCTCATGATATCACC+GGG + chr4.1:8724221-8724240 None:intergenic 45.0%
AATGGTTGGGGAAGCAATCA+AGG - chr4.1:8724268-8724287 MS.gene70247:intron 45.0%
ACAGCAAATGGCTCTCTAAG+AGG + chr4.1:8724982-8725001 None:intergenic 45.0%
ACAGGCTCATCTCATTGTGT+TGG - chr4.1:8721883-8721902 MS.gene70247:intron 45.0%
ACATTTCTACATTCGTCGGC+AGG - chr4.1:8724046-8724065 MS.gene70247:CDS 45.0%
ACCTGAACTGTATCACATCG+GGG + chr4.1:8724439-8724458 None:intergenic 45.0%
ACTCGGAATGGAGGAAACAT+TGG - chr4.1:8721939-8721958 MS.gene70247:intron 45.0%
AGTAGCATACCGGAACTTCT+CGG + chr4.1:8723166-8723185 None:intergenic 45.0%
AGTGAAGTGATAAGGGGTTG+AGG - chr4.1:8722481-8722500 MS.gene70247:intron 45.0%
ATGCCAGAACTTCAGCAATC+AGG + chr4.1:8724381-8724400 None:intergenic 45.0%
ATGCGTAGGATAAGCAGAGA+AGG + chr4.1:8721264-8721283 None:intergenic 45.0%
ATTGCTTCCCCAACCATTTG+AGG + chr4.1:8724266-8724285 None:intergenic 45.0%
CACAATGAGATGAGCCTGTT+TGG + chr4.1:8721882-8721901 None:intergenic 45.0%
CAGAACTTCAGCAATCAGGA+AGG + chr4.1:8724377-8724396 None:intergenic 45.0%
CAGGCTCATCTCATTGTGTT+GGG - chr4.1:8721884-8721903 MS.gene70247:intron 45.0%
CATTTCTACATTCGTCGGCA+GGG - chr4.1:8724047-8724066 MS.gene70247:CDS 45.0%
CTGCTGTAGAGAGTTATCAG+TGG + chr4.1:8723640-8723659 None:intergenic 45.0%
CTTCCTGATTGCTGAAGTTC+TGG - chr4.1:8724375-8724394 MS.gene70247:intron 45.0%
GAACAGCCTCACAAAAAGCA+AGG + chr4.1:8724700-8724719 None:intergenic 45.0%
GCATTCAGAATTCAGAGCAG+TGG - chr4.1:8721472-8721491 MS.gene70247:intron 45.0%
GCCTGGCAAAATACAGCAAA+TGG + chr4.1:8724994-8725013 None:intergenic 45.0%
GGTGAAATACCGAGAAGTTC+CGG - chr4.1:8723154-8723173 MS.gene70247:intron 45.0%
GGTTATGGTCATGATGAAGC+TGG - chr4.1:8722298-8722317 MS.gene70247:CDS 45.0%
GTAATTGGGAAAAGGGACTC+TGG - chr4.1:8723104-8723123 MS.gene70247:CDS 45.0%
GTGAAGTGATAAGGGGTTGA+GGG - chr4.1:8722482-8722501 MS.gene70247:intron 45.0%
GTGGTGTCTAAGTTTCTTGG+TGG - chr4.1:8722016-8722035 MS.gene70247:intron 45.0%
TAATGCTGTCAGCACTTTGG+TGG - chr4.1:8722268-8722287 MS.gene70247:CDS 45.0%
TATCAATCCCTTCGTTCCAG+AGG - chr4.1:8721346-8721365 MS.gene70247:intron 45.0%
TATGGTCATGATGAAGCTGG+GGG - chr4.1:8722301-8722320 MS.gene70247:CDS 45.0%
TCTCAGGTTATCTTTGCCGA+TGG - chr4.1:8724913-8724932 MS.gene70247:CDS 45.0%
TGATGCAAAACCAACATGCC+TGG + chr4.1:8725011-8725030 None:intergenic 45.0%
TGGCACTCATTGGACTCAAT+GGG - chr4.1:8725102-8725121 MS.gene70247:CDS 45.0%
TGGCTGAAGTAGGGGAATTA+AGG - chr4.1:8722458-8722477 MS.gene70247:CDS 45.0%
TTCCAAGTTGTACAGCCTAC+AGG + chr4.1:8724664-8724683 None:intergenic 45.0%
! AATGTGTTGTTAGGGAGTCC+GGG + chr4.1:8722183-8722202 None:intergenic 45.0%
! CAATGTGTTGTTAGGGAGTC+CGG + chr4.1:8722184-8722203 None:intergenic 45.0%
! CTGTATTTTGCCAGGCATGT+TGG - chr4.1:8724998-8725017 MS.gene70247:intron 45.0%
! GCTGAAGTTCTGGCATCTAA+GGG - chr4.1:8724385-8724404 MS.gene70247:intron 45.0%
! GCTTTTCACAATGCTCGACT+TGG - chr4.1:8721533-8721552 MS.gene70247:intron 45.0%
! GGGTTCCCTTCAAGATTTTG+GGG - chr4.1:8723133-8723152 MS.gene70247:intron 45.0%
! TAGGGGATATGAGGTTGGTT+TGG - chr4.1:8722435-8722454 MS.gene70247:CDS 45.0%
! TATCAGCTTTTGGCAGTTGC+TGG - chr4.1:8723056-8723075 MS.gene70247:CDS 45.0%
! TCTGGAACGAAGGGATTGAT+AGG + chr4.1:8721347-8721366 None:intergenic 45.0%
! TGCTGAAGTTCTGGCATCTA+AGG - chr4.1:8724384-8724403 MS.gene70247:intron 45.0%
!! GTGCTTTATTTGCCCTCTTG+AGG - chr4.1:8722899-8722918 MS.gene70247:intron 45.0%
!! TTGGTTTGGTGGCTGAAGTA+GGG - chr4.1:8722449-8722468 MS.gene70247:CDS 45.0%
!! TTTGGTGGTTGCACTGGTTA+TGG - chr4.1:8722283-8722302 MS.gene70247:CDS 45.0%
!!! GCCATTTGCTGTATTTTGCC+AGG - chr4.1:8724990-8725009 MS.gene70247:intron 45.0%
AAATGCAGGGTGGCACTCAT+TGG - chr4.1:8725092-8725111 MS.gene70247:CDS 50.0%
AATGAGTGCCACCCTGCATT+TGG + chr4.1:8725093-8725112 None:intergenic 50.0%
AGTGGTACCCGCAATTGGTT+TGG + chr4.1:8724750-8724769 None:intergenic 50.0%
ATTGGGAAAAGGGACTCTGG+TGG - chr4.1:8723107-8723126 MS.gene70247:CDS 50.0%
CACTCCTGGATATGCATCAG+AGG - chr4.1:8724766-8724785 MS.gene70247:intron 50.0%
CAGACCTCTGATGCATATCC+AGG + chr4.1:8724773-8724792 None:intergenic 50.0%
CCTGAACTGTATCACATCGG+GGG + chr4.1:8724438-8724457 None:intergenic 50.0%
CGGACTCCCTAACAACACAT+TGG - chr4.1:8722182-8722201 MS.gene70247:CDS 50.0%
CTCTGATGCATATCCAGGAG+TGG + chr4.1:8724768-8724787 None:intergenic 50.0%
GAAAAGGGACTCTGGTGGTT+TGG - chr4.1:8723112-8723131 MS.gene70247:CDS 50.0%
GATAGGAACAGAGAAGCGAG+AGG + chr4.1:8721330-8721349 None:intergenic 50.0%
GCACTCATACAGAGGTCATG+TGG - chr4.1:8723318-8723337 MS.gene70247:CDS 50.0%
GCCGATGGAACCTTCATTGA+TGG - chr4.1:8724928-8724947 MS.gene70247:CDS 50.0%
GGCACTCATTGGACTCAATG+GGG - chr4.1:8725103-8725122 MS.gene70247:CDS 50.0%
GTGGCACTCATTGGACTCAA+TGG - chr4.1:8725101-8725120 MS.gene70247:CDS 50.0%
GTTCAGAGAAGCTCTCCTGT+GGG - chr4.1:8724716-8724735 MS.gene70247:intron 50.0%
TATCCCACATGGACTCGGAA+TGG - chr4.1:8721927-8721946 MS.gene70247:intron 50.0%
TGCCTGTAGGCTGTACAACT+TGG - chr4.1:8724659-8724678 MS.gene70247:intron 50.0%
TGCTATGGGGAACTTGTGGA+AGG - chr4.1:8723949-8723968 MS.gene70247:intron 50.0%
TGGGCAAAAACTTGTCCCGT+AGG - chr4.1:8724574-8724593 MS.gene70247:intron 50.0%
TGTTCAGAGAAGCTCTCCTG+TGG - chr4.1:8724715-8724734 MS.gene70247:intron 50.0%
TTATCGCATACCACCATGGG+AGG + chr4.1:8723982-8724001 None:intergenic 50.0%
TTATTTGCCCTCTTGAGGCC+AGG - chr4.1:8722904-8722923 MS.gene70247:intron 50.0%
TTCAGAGAAGCTCTCCTGTG+GGG - chr4.1:8724717-8724736 MS.gene70247:intron 50.0%
TTTCATCAGCTTGCCGAGGA+TGG - chr4.1:8723243-8723262 MS.gene70247:CDS 50.0%
! ATGTGTTGTTAGGGAGTCCG+GGG + chr4.1:8722182-8722201 None:intergenic 50.0%
! CAATGTGTTGTTGGGGAGTC+CGG + chr4.1:8722069-8722088 None:intergenic 50.0%
! GTGGATTGTGGTTCAACTCC+CGG - chr4.1:8724200-8724219 MS.gene70247:intron 50.0%
!! ACTCAATGGGGACTAGTCCT+AGG - chr4.1:8725115-8725134 MS.gene70247:CDS 50.0%
!! CATGTGGCGGATATGTTGCT+GGG - chr4.1:8724123-8724142 MS.gene70247:intron 50.0%
!! GGGATATGAGGTTGGTTTGG+TGG - chr4.1:8722438-8722457 MS.gene70247:CDS 50.0%
!! GTTGGTTTGGTGGCTGAAGT+AGG - chr4.1:8722448-8722467 MS.gene70247:CDS 50.0%
!! TGGTTTGGTGGCTGAAGTAG+GGG - chr4.1:8722450-8722469 MS.gene70247:CDS 50.0%
!!! GCGTCTCCTTGCTTTTTGTG+AGG - chr4.1:8724691-8724710 MS.gene70247:intron 50.0%
ACCACAATCCACACCAAGCC+CGG + chr4.1:8724192-8724211 None:intergenic 55.0%
CATGGAGCAATCGTTCCACC+AGG + chr4.1:8724107-8724126 None:intergenic 55.0%
CCAGCAACATATCCGCCACA+TGG + chr4.1:8724125-8724144 None:intergenic 55.0%
CCAGTCAAGTCCACCATCCT+CGG + chr4.1:8723259-8723278 None:intergenic 55.0%
CCCCCGATGTGATACAGTTC+AGG - chr4.1:8724435-8724454 MS.gene70247:intron 55.0%
CCTCCATTCCGAGTCCATGT+GGG + chr4.1:8721933-8721952 None:intergenic 55.0%
CGGACTCCCCAACAACACAT+TGG - chr4.1:8722067-8722086 MS.gene70247:intron 55.0%
CTCATCTCCTGGCCTCAAGA+GGG + chr4.1:8722914-8722933 None:intergenic 55.0%
GAAGAGTGAGCGAGTACCTC+TGG + chr4.1:8721365-8721384 None:intergenic 55.0%
GAGATTCGAACGGGATGCGT+AGG + chr4.1:8721278-8721297 None:intergenic 55.0%
GCAGGGTGCAGATTTGATGG+CGG - chr4.1:8724064-8724083 MS.gene70247:CDS 55.0%
GGAACGATTGCTCCATGTGG+CGG - chr4.1:8724110-8724129 MS.gene70247:intron 55.0%
GGTGGAACGATTGCTCCATG+TGG - chr4.1:8724107-8724126 MS.gene70247:intron 55.0%
GTTTAGCCCATTGCCGTCTC+CGG - chr4.1:8722047-8722066 MS.gene70247:intron 55.0%
TCCACCATGACCGAACACTC+AGG + chr4.1:8723925-8723944 None:intergenic 55.0%
TCCTCCATTCCGAGTCCATG+TGG + chr4.1:8721934-8721953 None:intergenic 55.0%
TCCTGAGTGTTCGGTCATGG+TGG - chr4.1:8723921-8723940 MS.gene70247:intron 55.0%
TCGGCAGGGTGCAGATTTGA+TGG - chr4.1:8724061-8724080 MS.gene70247:CDS 55.0%
TTTAACCCATTGCCGCTCCC+CGG - chr4.1:8722162-8722181 MS.gene70247:CDS 55.0%
! CAGCACTTTGGTGGTTGCAC+TGG - chr4.1:8722277-8722296 MS.gene70247:CDS 55.0%
! CAGGGTGCAGATTTGATGGC+GGG - chr4.1:8724065-8724084 MS.gene70247:CDS 55.0%
! GAAGCGAGAGGCATAGCGAA+TGG + chr4.1:8721318-8721337 None:intergenic 55.0%
!! AGCGAGTACCTCTGGAACGA+AGG + chr4.1:8721357-8721376 None:intergenic 55.0%
!! AGGCATTGAACCTCCCATGG+TGG - chr4.1:8723969-8723988 MS.gene70247:intron 55.0%
!! CCATGTGGCGGATATGTTGC+TGG - chr4.1:8724122-8724141 MS.gene70247:intron 55.0%
!! CGGCAATGGGCTAAACGTTC+AGG + chr4.1:8722043-8722062 None:intergenic 55.0%
!! GCGAGTACCTCTGGAACGAA+GGG + chr4.1:8721356-8721375 None:intergenic 55.0%
!! GGAAGGCATTGAACCTCCCA+TGG - chr4.1:8723966-8723985 MS.gene70247:intron 55.0%
!! GGTTTGGTGTATGACCCCAC+AGG + chr4.1:8724734-8724753 None:intergenic 55.0%
CATCAGCTTGCCGAGGATGG+TGG - chr4.1:8723246-8723265 MS.gene70247:CDS 60.0%
CCAATTGCGGGTACCACTCC+TGG - chr4.1:8724752-8724771 MS.gene70247:intron 60.0%
CCACAATCCACACCAAGCCC+GGG + chr4.1:8724191-8724210 None:intergenic 60.0%
CCAGGAGTGGTACCCGCAAT+TGG + chr4.1:8724755-8724774 None:intergenic 60.0%
CCCACATGGACTCGGAATGG+AGG - chr4.1:8721930-8721949 MS.gene70247:intron 60.0%
CCTCATCTCCTGGCCTCAAG+AGG + chr4.1:8722915-8722934 None:intergenic 60.0%
CCTCTTGAGGCCAGGAGATG+AGG - chr4.1:8722912-8722931 MS.gene70247:intron 60.0%
GGGACGTGAAGCTCTTGACC+AGG - chr4.1:8722321-8722340 MS.gene70247:intron 60.0%
GTTGTTGGGGAGTCCGGAGA+CGG + chr4.1:8722063-8722082 None:intergenic 60.0%
TATCACATCGGGGGACGCGA+GGG + chr4.1:8724429-8724448 None:intergenic 60.0%
TTGTTAGGGAGTCCGGGGAG+CGG + chr4.1:8722177-8722196 None:intergenic 60.0%
!! CCGAGGATGGTGGACTTGAC+TGG - chr4.1:8723256-8723275 MS.gene70247:CDS 60.0%
GGGAGTCCGGAGACGGCAAT+GGG + chr4.1:8722056-8722075 None:intergenic 65.0%
GTATCACATCGGGGGACGCG+AGG + chr4.1:8724430-8724449 None:intergenic 65.0%
!! CCCGGGCTTGGTGTGGATTG+TGG - chr4.1:8724188-8724207 MS.gene70247:intron 65.0%
CACCAAGCCCGGGCGCAGAA+AGG + chr4.1:8724181-8724200 None:intergenic 70.0%
GGAGTCCGGGGAGCGGCAAT+GGG + chr4.1:8722170-8722189 None:intergenic 70.0%
GGGGAGTCCGGAGACGGCAA+TGG + chr4.1:8722057-8722076 None:intergenic 70.0%
!! TTCTGCGCCCGGGCTTGGTG+TGG - chr4.1:8724181-8724200 MS.gene70247:intron 70.0%
CAGCGCGCCTTTCTGCGCCC+GGG - chr4.1:8724171-8724190 MS.gene70247:intron 75.0%
CATCGGGGGACGCGAGGGAG+TGG + chr4.1:8724424-8724443 None:intergenic 75.0%
CGCCTTTCTGCGCCCGGGCT+TGG - chr4.1:8724176-8724195 MS.gene70247:intron 75.0%
GCAGCGCGCCTTTCTGCGCC+CGG - chr4.1:8724170-8724189 MS.gene70247:intron 75.0%
GGGAGTCCGGGGAGCGGCAA+TGG + chr4.1:8722171-8722190 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 8721242 8725159 8721242 ID=MS.gene70247
chr4.1 mRNA 8721242 8725159 8721242 ID=MS.gene70247.t1;Parent=MS.gene70247
chr4.1 exon 8725034 8725159 8725034 ID=MS.gene70247.t1.exon1;Parent=MS.gene70247.t1
chr4.1 CDS 8725034 8725159 8725034 ID=cds.MS.gene70247.t1;Parent=MS.gene70247.t1
chr4.1 exon 8724839 8724952 8724839 ID=MS.gene70247.t1.exon2;Parent=MS.gene70247.t1
chr4.1 CDS 8724839 8724952 8724839 ID=cds.MS.gene70247.t1;Parent=MS.gene70247.t1
chr4.1 exon 8724011 8724121 8724011 ID=MS.gene70247.t1.exon3;Parent=MS.gene70247.t1
chr4.1 CDS 8724011 8724121 8724011 ID=cds.MS.gene70247.t1;Parent=MS.gene70247.t1
chr4.1 exon 8723468 8723530 8723468 ID=MS.gene70247.t1.exon4;Parent=MS.gene70247.t1
chr4.1 CDS 8723468 8723530 8723468 ID=cds.MS.gene70247.t1;Parent=MS.gene70247.t1
chr4.1 exon 8723226 8723339 8723226 ID=MS.gene70247.t1.exon5;Parent=MS.gene70247.t1
chr4.1 CDS 8723226 8723339 8723226 ID=cds.MS.gene70247.t1;Parent=MS.gene70247.t1
chr4.1 exon 8723000 8723149 8723000 ID=MS.gene70247.t1.exon6;Parent=MS.gene70247.t1
chr4.1 CDS 8723000 8723149 8723000 ID=cds.MS.gene70247.t1;Parent=MS.gene70247.t1
chr4.1 exon 8722411 8722488 8722411 ID=MS.gene70247.t1.exon7;Parent=MS.gene70247.t1
chr4.1 CDS 8722411 8722488 8722411 ID=cds.MS.gene70247.t1;Parent=MS.gene70247.t1
chr4.1 exon 8722112 8722333 8722112 ID=MS.gene70247.t1.exon8;Parent=MS.gene70247.t1
chr4.1 CDS 8722112 8722333 8722112 ID=cds.MS.gene70247.t1;Parent=MS.gene70247.t1
chr4.1 exon 8721945 8722031 8721945 ID=MS.gene70247.t1.exon9;Parent=MS.gene70247.t1
chr4.1 CDS 8721945 8722031 8721945 ID=cds.MS.gene70247.t1;Parent=MS.gene70247.t1
chr4.1 exon 8721614 8721733 8721614 ID=MS.gene70247.t1.exon10;Parent=MS.gene70247.t1
chr4.1 CDS 8721614 8721733 8721614 ID=cds.MS.gene70247.t1;Parent=MS.gene70247.t1
chr4.1 exon 8721390 8721482 8721390 ID=MS.gene70247.t1.exon11;Parent=MS.gene70247.t1
chr4.1 CDS 8721390 8721482 8721390 ID=cds.MS.gene70247.t1;Parent=MS.gene70247.t1
chr4.1 exon 8721242 8721301 8721242 ID=MS.gene70247.t1.exon12;Parent=MS.gene70247.t1
chr4.1 CDS 8721242 8721301 8721242 ID=cds.MS.gene70247.t1;Parent=MS.gene70247.t1
Gene Sequence

>MS.gene70247

ATGTTGAGCATAACGTGCGCCTTCTCTGCTTATCCTACGCATCCCGTTCGAATCTCCATTACAACAACATCTACCATTCGCTATGCCTCTCGCTTCTCTGTTCCTATCAATCCCTTCGTTCCAGAGGTACTCGCTCACTCTTCTATTTTCTCACTTCATAATTTCGCTGCTTCAAAACCATTCAGACTTAATTTTGTTGCAATGCAGGTTATTGAAGCCGTTGATGCATTGCATTCAGAATTCAGAGCAGTGGATAATTTAGTTGCATACAATACCACCCGTGTTCTTAAAGCTTTTCACAATGCTCGACTTGGTTCTCATGTATGTAACTATGTGCTTTCATTTCGATAACCGTTTTGTAAATGAATAATTATTTTAGGTATTTATTTTTTGGGATAAACTACTTAATTATGCATTTATCGTATAAGTGTTTATGTATAAGTTGTTTCTATAACTAAAGATAAAATCAAGTCAAATTCTTTTCATATAAGCTATAAGCTGTTTTCATAAGCTATTTTGGAGAGCATATGAAAATAAGCTAAAAATAGCTTATGGACATGTTATATGTTGTTTCTATAAGCTCTTCGGAACAGTCTTACCAATGCTTATGCTAATAGATAAGTTCAAATAAGACAATCCAAACAGGCTCATCTCATTGTGTTGGGAAATCAAGTGTGAGTGATTATATCCCACATGGACTCGGAATGGAGGAAACATTGGATATATAAGAGAGGGGACCCATATACCTAATGCCTTAAGGTTTTGAGTGGAGATGTGGTGTCTAAGTTTCTTGGTGGTCCTGAACGTTTAGCCCATTGCCGTCTCCGGACTCCCCAACAACACATTGGTCTTTATGCTAGTAAATAAGCTCAAATAAGTCAATCTAAACATGCCCTAATTGGTTGTTTTGTTAATGAACGTTTAACCCATTGCCGCTCCCCGGACTCCCTAACAACACATTGGTCTTTATGCTAGTAAATAAGCTCAAATAAGTCAATCTAAACATGCCCTAATTGGTTGTTTTGTTAATGCTGTCAGCACTTTGGTGGTTGCACTGGTTATGGTCATGATGAAGCTGGGGGACGTGAAGCTCTTGACCAGGCTTTTTCAGAAATTGTTGGAGCAGAATCAGCTATTGTTCGTTCACAGGTTCTTAACTTTCCCTGTTTTCTTTATATTAAGTTACTTATTAATAGGGGATATGAGGTTGGTTTGGTGGCTGAAGTAGGGGAATTAAGGAGTGAAGTGATAAGGGGTTGAGGGTTTGAACCACACTCCCAGCATATAATACTAACAATGTTAACATTGGCGATTTAAATAAAAAGGTTACTTTTTAATGTTCTCATTGAATATGACGAAAAGTGAGTTCAATGTAAAGTGATTTATGTTTGATACATTTATATAAAAATGCGCTGAACAATAAATTTAAAGCTAAAAATCAGCTATAGAGATGTAAGCTCCAAATTATAGCTTCAAGTTATAACTTATAATCAATTCTGAAGGCAAAATCAATTCTATTCAAGAAAATTCAAACATGTCAAAATCAATTCTACACTTCTAAGTCAATTATGTTTTCTCCCAAAAGTGGAACCAAACATACACTTGCATACTATTCTCACTTGTCAACAGTTCTTCTCAGGTACTCATGCCATCACATGTGCTTTATTTGCCCTCTTGAGGCCAGGAGATGAGGTAACCCTTTTTTCTTCTAATATTCTATGCTTTTCATTCTTTACCAGCAGTATAGCTCTATAGTTGTAGAATGTTTCCCTGTTGAATATGTAACTGGAATAAGGTTTTTAGACTAATATAGCTATCAGCTTTTGGCAGTTGCTGGTGCTCCATATGACACATTAGAGGAAGTAATTGGGAAAAGGGACTCTGGTGGTTTGGGTTCCCTTCAAGATTTTGGGGTGAAATACCGAGAAGTTCCGGTATGCTACTAATATTTCTTTCTAGATCTAATTCATTAGTATTCTATGTGACTCTTCTATGACATTTTTTCATCAGCTTGCCGAGGATGGTGGACTTGACTGGAATGCACTGATGCATGCTGTCAAACCCGAAACAAAATGTGCACTCATACAGAGGTCATGTGGTTATTCATGGCGTCAGAGTTTGAGTGTTAATGACATAGGGAGAGCGATACAAATTATCAAAGTAAGATTCTTAGTTGTGCTTTTTGGTTTGATACTGTAACATTATGTTTTAAAGTTAATATTATTCAAGGCAACCATTGTGACCTGTGTGAGTTAAAATACGAATTGCTCACATAATTTGTAGTTATTGTTTAATTTCCCTGATCTAAAAGTCCATAATACTAGTAGAAGCTATATTGATTGTTAGGGCATGCTCTATAATAATATTTTAGCTTCTATGCTTTTGTTAGATTAAACCACTGATAACTCTCTACAGCAGTCTTGTTTTGCATGGCATTTTTTTTATCAACAGAATTACTGGAATACTACTAGCACAAATCCAACTGATTCCTTTTGTGACCTAAAAATATTAAAGAACAGAAAATAGTGGCATATAGACAGATGCTTTTAAAGTATGAGCGTTAGGGTTTTACACTCAAAATATATTAAACAAATGCTTACTGTCTTCAAAACCTATAATTTTTCTGATCACAAAATCTTCACCTGTAACCTTTTTACCCTTCAATGTTCAGATGCAAAATCCTGAGTGTTCGGTCATGGTGGATAATTGCTATGGGGAACTTGTGGAAGGCATTGAACCTCCCATGGTGGTATGCGATAATATGCCGCAGTATGTATTGCTTTATTCCAAGGATGTGCAGTATCACATTTCTACATTCGTCGGCAGGGTGCAGATTTGATGGCGGGCAGTTTGATAAAGAATCCTGGTGGAACGATTGCTCCATGTGGCGGATATGTTGCTGGGAAAAAGAAATTGGTTGAAGCAGCTGCAGCGCGCCTTTCTGCGCCCGGGCTTGGTGTGGATTGTGGTTCAACTCCCGGTGATATCATGAGAGCCTTTTTTCAGGGATTATTTCTTTCACCTCAAATGGTTGGGGAAGCAATCAAGGTACCAGATTTATCATTTTATTAGAAGATATACATTTTTTGCTTATATTTGGTAGTGAGATTTTCTGTATTCTTTACAAGGGTTCCTTCCTGATTGCTGAAGTTCTGGCATCTAAGGGTTATAAAGTGCAGCCACTCCCTCGCGTCCCCCGATGTGATACAGTTCAGGTTTTCTTGCTGAGCCTGTGCTATCATTCTTTCTAGATGAAACCTGTATCTGATTTTTAATTTTGATTTTAAGTTGGCAGCGAAATTTTGTTTCTGGTAGAAAAGCTGTGGTTGATGTGGGCAAAAACTTGTCCCGTAGGAGTTTCTTTCAGTATGTATATAGATGATAATTATTCAGATCATAAGTAAAATTGATCTTCAATGCCTGTAGGCTGTACAACTTGGAAGCCGTGAGCGTCTCCTTGCTTTTTGTGAGGCTGTTCAGAGAAGCTCTCCTGTGGGGTCATACACCAAACCAATTGCGGGTACCACTCCTGGATATGCATCAGAGGTCTGCTCTGATTAACCTTCACAGTCCCTAAACAAATTGATTATGTTTTGGTCCTTAAATGATGTTCAATATTACTTTGATATCCAAAGTCCTACCAGATATTAATAACTCTTTGATATCACTCTTCTCAGGTTATCTTTGCCGATGGAACCTTCATTGATGGAAGTACTAGTGAGCTTTCATGTGATGGACCTCTTAGAGAGCCATTTGCTGTATTTTGCCAGGCATGTTGGTTTTGCATCAAGCAATAGTATACTATATACAGGTATGATTCACTATTACATATTAACTTCATTTGTTTTCCAAATGCAGGGTGGCACTCATTGGACTCAATGGGGACTAGTCCTAGGAGAAGTTCTGAAATCTATATGA

Protein sequence

>MS.gene70247.t1

MLSITCAFSAYPTHPVRISITTTSTIRYASRFSVPINPFVPEVIEAVDALHSEFRAVDNLVAYNTTRVLKAFHNARLGSHHFGGCTGYGHDEAGGREALDQAFSEIVGAESAIVRSQFFSGTHAITCALFALLRPGDELLAVAGAPYDTLEEVIGKRDSGGLGSLQDFGVKYREVPLAEDGGLDWNALMHAVKPETKCALIQRSCGYSWRQSLSVNDIGRAIQIIKMQNPECSVMVDNCYGELVEGIEPPMVGADLMAGSLIKNPGGTIAPCGGYVAGKKKLVEAAAARLSAPGLGVDCGSTPGDIMRAFFQGLFLSPQMVGEAIKGSFLIAEVLASKGYKVQPLPRVPRCDTVQAVQLGSRERLLAFCEAVQRSSPVGSYTKPIAGTTPGYASEVIFADGTFIDGSTSELSCDGPLREPFAVFCQGGTHWTQWGLVLGEVLKSI