Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75634.t1 | XP_003601746.1 | 92.8 | 363 | 21 | 2 | 1 | 363 | 1 | 358 | 1.00E-184 | 656 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75634.t1 | Q9SAC0 | 74.9 | 299 | 75 | 0 | 65 | 363 | 69 | 367 | 1.8e-137 | 490.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75634.t1 | B7FL73 | 92.8 | 363 | 21 | 2 | 1 | 363 | 1 | 358 | 7.4e-185 | 656.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene75634 | 0.804355 | 2.25E-49 | -1.69E-46 |
| MS.gene049351 | MS.gene75634 | 0.835523 | 1.60E-56 | -1.69E-46 |
| MS.gene049427 | MS.gene75634 | 0.807502 | 4.90E-50 | -1.69E-46 |
| MS.gene050099 | MS.gene75634 | 0.80507 | 1.59E-49 | -1.69E-46 |
| MS.gene050301 | MS.gene75634 | 0.81747 | 3.24E-52 | -1.69E-46 |
| MS.gene050397 | MS.gene75634 | 0.832736 | 7.98E-56 | -1.69E-46 |
| MS.gene050529 | MS.gene75634 | 0.808235 | 3.42E-50 | -1.69E-46 |
| MS.gene050670 | MS.gene75634 | 0.829872 | 4.04E-55 | -1.69E-46 |
| MS.gene050812 | MS.gene75634 | 0.838021 | 3.68E-57 | -1.69E-46 |
| MS.gene05101 | MS.gene75634 | 0.82988 | 4.02E-55 | -1.69E-46 |
| MS.gene05105 | MS.gene75634 | 0.803989 | 2.68E-49 | -1.69E-46 |
| MS.gene051171 | MS.gene75634 | 0.843314 | 1.51E-58 | -1.69E-46 |
| MS.gene051242 | MS.gene75634 | 0.821149 | 4.71E-53 | -1.69E-46 |
| MS.gene051244 | MS.gene75634 | 0.829313 | 5.52E-55 | -1.69E-46 |
| MS.gene051525 | MS.gene75634 | 0.812934 | 3.30E-51 | -1.69E-46 |
| MS.gene051582 | MS.gene75634 | 0.840229 | 9.86E-58 | -1.69E-46 |
| MS.gene052011 | MS.gene75634 | -0.818124 | 2.31E-52 | -1.69E-46 |
| MS.gene052078 | MS.gene75634 | 0.850954 | 1.22E-60 | -1.69E-46 |
| MS.gene052188 | MS.gene75634 | 0.837008 | 6.70E-57 | -1.69E-46 |
| MS.gene052253 | MS.gene75634 | 0.830074 | 3.60E-55 | -1.69E-46 |
| MS.gene052310 | MS.gene75634 | 0.84834 | 6.52E-60 | -1.69E-46 |
| MS.gene052322 | MS.gene75634 | 0.84013 | 1.05E-57 | -1.69E-46 |
| MS.gene052340 | MS.gene75634 | 0.835168 | 1.96E-56 | -1.69E-46 |
| MS.gene052481 | MS.gene75634 | 0.816247 | 6.10E-52 | -1.69E-46 |
| MS.gene052485 | MS.gene75634 | 0.825976 | 3.49E-54 | -1.69E-46 |
| MS.gene053209 | MS.gene75634 | 0.830258 | 3.25E-55 | -1.69E-46 |
| MS.gene053330 | MS.gene75634 | 0.810824 | 9.51E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene75634 | 0.80494 | 1.70E-49 | -1.69E-46 |
| MS.gene055116 | MS.gene75634 | 0.80951 | 1.83E-50 | -1.69E-46 |
| MS.gene055277 | MS.gene75634 | 0.823518 | 1.33E-53 | -1.69E-46 |
| MS.gene055370 | MS.gene75634 | 0.80159 | 8.38E-49 | -1.69E-46 |
| MS.gene055412 | MS.gene75634 | 0.80306 | 4.17E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene75634 | 0.80925 | 2.08E-50 | -1.69E-46 |
| MS.gene055428 | MS.gene75634 | 0.815408 | 9.39E-52 | -1.69E-46 |
| MS.gene05553 | MS.gene75634 | 0.816036 | 6.80E-52 | -1.69E-46 |
| MS.gene055971 | MS.gene75634 | 0.81291 | 3.34E-51 | -1.69E-46 |
| MS.gene056191 | MS.gene75634 | 0.813654 | 2.29E-51 | -1.69E-46 |
| MS.gene056609 | MS.gene75634 | 0.803967 | 2.71E-49 | -1.69E-46 |
| MS.gene056633 | MS.gene75634 | 0.800363 | 1.49E-48 | -1.69E-46 |
| MS.gene056659 | MS.gene75634 | 0.806118 | 9.61E-50 | -1.69E-46 |
| MS.gene056664 | MS.gene75634 | 0.808628 | 2.82E-50 | -1.69E-46 |
| MS.gene056796 | MS.gene75634 | 0.857335 | 1.75E-62 | -1.69E-46 |
| MS.gene056897 | MS.gene75634 | 0.80405 | 2.60E-49 | -1.69E-46 |
| MS.gene057011 | MS.gene75634 | 0.803517 | 3.36E-49 | -1.69E-46 |
| MS.gene057121 | MS.gene75634 | 0.804146 | 2.49E-49 | -1.69E-46 |
| MS.gene057124 | MS.gene75634 | 0.833052 | 6.66E-56 | -1.69E-46 |
| MS.gene057196 | MS.gene75634 | 0.833006 | 6.83E-56 | -1.69E-46 |
| MS.gene057295 | MS.gene75634 | 0.800903 | 1.16E-48 | -1.69E-46 |
| MS.gene057749 | MS.gene75634 | 0.817357 | 3.44E-52 | -1.69E-46 |
| MS.gene057823 | MS.gene75634 | 0.814338 | 1.62E-51 | -1.69E-46 |
| MS.gene058002 | MS.gene75634 | 0.836774 | 7.69E-57 | -1.69E-46 |
| MS.gene058082 | MS.gene75634 | 0.802013 | 6.86E-49 | -1.69E-46 |
| MS.gene05811 | MS.gene75634 | 0.835682 | 1.46E-56 | -1.69E-46 |
| MS.gene058233 | MS.gene75634 | 0.84165 | 4.18E-58 | -1.69E-46 |
| MS.gene058276 | MS.gene75634 | 0.842632 | 2.30E-58 | -1.69E-46 |
| MS.gene058293 | MS.gene75634 | 0.828763 | 7.50E-55 | -1.69E-46 |
| MS.gene058365 | MS.gene75634 | 0.811313 | 7.45E-51 | -1.69E-46 |
| MS.gene058444 | MS.gene75634 | 0.814892 | 1.22E-51 | -1.69E-46 |
| MS.gene058660 | MS.gene75634 | 0.840892 | 6.61E-58 | -1.69E-46 |
| MS.gene058746 | MS.gene75634 | 0.827092 | 1.89E-54 | -1.69E-46 |
| MS.gene05886 | MS.gene75634 | 0.82783 | 1.26E-54 | -1.69E-46 |
| MS.gene058993 | MS.gene75634 | 0.839858 | 1.23E-57 | -1.69E-46 |
| MS.gene05907 | MS.gene75634 | 0.815669 | 8.21E-52 | -1.69E-46 |
| MS.gene059420 | MS.gene75634 | 0.80145 | 8.95E-49 | -1.69E-46 |
| MS.gene059518 | MS.gene75634 | 0.816171 | 6.35E-52 | -1.69E-46 |
| MS.gene059676 | MS.gene75634 | 0.84279 | 2.09E-58 | -1.69E-46 |
| MS.gene059688 | MS.gene75634 | 0.819457 | 1.15E-52 | -1.69E-46 |
| MS.gene059692 | MS.gene75634 | 0.837176 | 6.07E-57 | -1.69E-46 |
| MS.gene059695 | MS.gene75634 | 0.835047 | 2.11E-56 | -1.69E-46 |
| MS.gene05984 | MS.gene75634 | 0.826056 | 3.34E-54 | -1.69E-46 |
| MS.gene059894 | MS.gene75634 | 0.812829 | 3.48E-51 | -1.69E-46 |
| MS.gene059960 | MS.gene75634 | 0.803429 | 3.50E-49 | -1.69E-46 |
| MS.gene060403 | MS.gene75634 | 0.808092 | 3.67E-50 | -1.69E-46 |
| MS.gene060407 | MS.gene75634 | 0.840031 | 1.11E-57 | -1.69E-46 |
| MS.gene061049 | MS.gene75634 | 0.824275 | 8.81E-54 | -1.69E-46 |
| MS.gene061154 | MS.gene75634 | 0.809181 | 2.15E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75634.t1 | MTR_3g084950 | 94.490 | 363 | 15 | 2 | 1 | 363 | 1 | 358 | 0.0 | 662 |
| MS.gene75634.t1 | MTR_8g097190 | 71.304 | 345 | 87 | 3 | 22 | 363 | 29 | 364 | 0.0 | 523 |
| MS.gene75634.t1 | MTR_8g097190 | 62.753 | 247 | 80 | 3 | 22 | 265 | 29 | 266 | 9.11e-110 | 322 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75634.t1 | AT1G10830 | 76.897 | 290 | 67 | 0 | 74 | 363 | 78 | 367 | 1.49e-177 | 498 |
| MS.gene75634.t1 | AT1G10830 | 73.936 | 188 | 49 | 0 | 74 | 261 | 78 | 265 | 6.79e-103 | 305 |
| MS.gene75634.t1 | AT1G10830 | 74.545 | 110 | 28 | 0 | 74 | 183 | 78 | 187 | 1.10e-52 | 174 |
Find 75 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATTTCTAAAAGATTAA+AGG | 0.126652 | 3.3:-70996919 | None:intergenic |
| GATTTATTTCGCCGCAATTT+TGG | 0.154342 | 3.3:+70995858 | MS.gene75634:CDS |
| TTAATTTCACATCATCTATT+TGG | 0.187467 | 3.3:+70997469 | MS.gene75634:CDS |
| CATTACCCATTCTTCAATAA+AGG | 0.235780 | 3.3:+70995765 | MS.gene75634:CDS |
| AAACCGCAAATATGAGAATT+AGG | 0.277606 | 3.3:-70996520 | None:intergenic |
| GGTGTCTTGCTCATACAATT+TGG | 0.284942 | 3.3:+70997410 | MS.gene75634:CDS |
| TATGAGGAGCGTTGAGAAGT+AGG | 0.327710 | 3.3:-70995679 | None:intergenic |
| TCTCTCACAGGTTCAACTTC+AGG | 0.333892 | 3.3:+70995740 | MS.gene75634:CDS |
| AATGCAGTAATTACTAAGTA+TGG | 0.338106 | 3.3:-70997640 | None:intergenic |
| GTGGCTGTTGCAGCTTCAAT+TGG | 0.349115 | 3.3:+70997445 | MS.gene75634:CDS |
| AGATGGTTGGTCAGGTAATC+TGG | 0.354286 | 3.3:+70997389 | MS.gene75634:intron |
| TGCTGTTCAGATGGTTGGTC+AGG | 0.355164 | 3.3:+70997381 | MS.gene75634:intron |
| GAGCGTTGAGAAGTAGGTTT+TGG | 0.361636 | 3.3:-70995673 | None:intergenic |
| CACATCATCTATTTGGTGCT+TGG | 0.366412 | 3.3:+70997476 | MS.gene75634:CDS |
| AAAATACATCTATATGAAAC+TGG | 0.374022 | 3.3:+70996957 | MS.gene75634:CDS |
| CGGAACAGAAAATAACTTCA+TGG | 0.384156 | 3.3:+70995836 | MS.gene75634:CDS |
| TTTATTAATCACAGATATGA+TGG | 0.389024 | 3.3:+70996804 | MS.gene75634:CDS |
| CCATCAAGGATTGCTGCAAA+AGG | 0.390457 | 3.3:-70997571 | None:intergenic |
| ATTGATAACTCAACTGGCTT+TGG | 0.394276 | 3.3:+70995913 | MS.gene75634:CDS |
| GATCCTAATTCTCATATTTG+CGG | 0.403823 | 3.3:+70996517 | MS.gene75634:CDS |
| CTTGCTCATACAATTTGGAT+TGG | 0.409860 | 3.3:+70997415 | MS.gene75634:CDS |
| TCTAAAAGATTAAAGGTTGA+AGG | 0.413154 | 3.3:-70996912 | None:intergenic |
| TCTTCATTCTAAATGTGGTA+TGG | 0.429366 | 3.3:+70995890 | MS.gene75634:CDS |
| AACAAAGATGGGTGATGGGT+TGG | 0.432814 | 3.3:-70995619 | None:intergenic |
| TTGCTCATACAATTTGGATT+GGG | 0.435090 | 3.3:+70997416 | MS.gene75634:CDS |
| GGAATATGAAATGGAATAAG+AGG | 0.440648 | 3.3:-70995647 | None:intergenic |
| AAACTAGCAGCCTGCATAAG+AGG | 0.442374 | 3.3:-70997688 | None:intergenic |
| CTTTGCACACCCTCTTATGC+AGG | 0.452520 | 3.3:+70997678 | MS.gene75634:CDS |
| GATTAAAGGTTGAAGGATAT+AGG | 0.458002 | 3.3:-70996905 | None:intergenic |
| TAAGAGGGAGAGAACAAAGA+TGG | 0.458636 | 3.3:-70995631 | None:intergenic |
| ATGGCTAGCCTACGGAATAC+TGG | 0.465850 | 3.3:+70996554 | MS.gene75634:CDS |
| GTATGGATTGATAACTCAAC+TGG | 0.468553 | 3.3:+70995907 | MS.gene75634:CDS |
| CATCTATTTGGTGCTTGGAA+TGG | 0.469784 | 3.3:+70997481 | MS.gene75634:CDS |
| GATTAATACCTGTGGATGCC+TGG | 0.472549 | 3.3:-70996994 | None:intergenic |
| AATACTGGTGAGAAAATCAT+TGG | 0.476132 | 3.3:+70996569 | MS.gene75634:CDS |
| GATGAATCCCCGGAGTACTC+TGG | 0.479621 | 3.3:-70996845 | None:intergenic |
| TGGCAGCTCCAGAGTACTCC+GGG | 0.483611 | 3.3:+70996837 | MS.gene75634:CDS |
| CAACAATACCTCGTGAGAAT+CGG | 0.485418 | 3.3:-70995968 | None:intergenic |
| ATTTGGAGATGAGAAGTATG+AGG | 0.486179 | 3.3:-70995695 | None:intergenic |
| AAGAGGGAGAGAACAAAGAT+GGG | 0.490152 | 3.3:-70995630 | None:intergenic |
| CTGCTAGTTTCAACCTCCAT+TGG | 0.497102 | 3.3:+70997701 | MS.gene75634:CDS |
| GAGAGAACAAAGATGGGTGA+TGG | 0.501885 | 3.3:-70995624 | None:intergenic |
| TTGGTGCTTGGAATGGAGAT+AGG | 0.502563 | 3.3:+70997488 | MS.gene75634:CDS |
| AATCCGCAGGTAATCTTTGA+CGG | 0.502619 | 3.3:-70997594 | None:intergenic |
| AACCTGTGAGAGAGAGATAG+TGG | 0.513143 | 3.3:-70995730 | None:intergenic |
| GGTTCTCTTCATTCTAAATG+TGG | 0.519664 | 3.3:+70995885 | MS.gene75634:CDS |
| CATCAAGGATTGCTGCAAAA+GGG | 0.524831 | 3.3:-70997570 | None:intergenic |
| ATTTCCTTTCCACCTACCAA+TGG | 0.531822 | 3.3:-70997717 | None:intergenic |
| ACAATAGTAGTGACAGCTAA+AGG | 0.535492 | 3.3:-70996632 | None:intergenic |
| ATTACCTGCGGATTTCTACA+AGG | 0.539323 | 3.3:+70997603 | MS.gene75634:CDS |
| TAGTTTCAACCTCCATTGGT+AGG | 0.542093 | 3.3:+70997705 | MS.gene75634:CDS |
| CACAGAAGTTGATGAATCCC+CGG | 0.546615 | 3.3:-70996855 | None:intergenic |
| GTAATCTTTGACGGCCATCA+AGG | 0.548368 | 3.3:-70997585 | None:intergenic |
| AGAGAACAAAGATGGGTGAT+GGG | 0.548569 | 3.3:-70995623 | None:intergenic |
| AACTCCTTGTAGAAATCCGC+AGG | 0.550585 | 3.3:-70997607 | None:intergenic |
| AAGAATAACCAGGCATCCAC+AGG | 0.553400 | 3.3:+70996986 | MS.gene75634:CDS |
| CGGGGATTCATCAACTTCTG+TGG | 0.555871 | 3.3:+70996856 | MS.gene75634:CDS |
| TCCTTTCCACCTACCAATGG+AGG | 0.559081 | 3.3:-70997714 | None:intergenic |
| GATATGATGGAATTCAACTC+TGG | 0.560955 | 3.3:+70996817 | MS.gene75634:CDS |
| CTGGCAGCTCCAGAGTACTC+CGG | 0.564920 | 3.3:+70996836 | MS.gene75634:CDS |
| GAATATGAAATGGAATAAGA+GGG | 0.569325 | 3.3:-70995646 | None:intergenic |
| AACCACTATCTCTCTCTCAC+AGG | 0.578529 | 3.3:+70995728 | MS.gene75634:CDS |
| AACTAGCAGCCTGCATAAGA+GGG | 0.580769 | 3.3:-70997687 | None:intergenic |
| GTAATTACTGCATTAACACT+AGG | 0.589570 | 3.3:+70997649 | MS.gene75634:CDS |
| AGAAGCAGAGAGTATAAGAG+AGG | 0.598033 | 3.3:-70995590 | None:intergenic |
| CTGGCATCATAAGAATAACC+AGG | 0.600338 | 3.3:+70996976 | MS.gene75634:CDS |
| TTCCGTTAAACTAAAAGCTG+CGG | 0.611809 | 3.3:-70995818 | None:intergenic |
| ACAGTGGCATGGCTAGCCTA+CGG | 0.614954 | 3.3:+70996546 | MS.gene75634:CDS |
| AGGCGATTAGCTCAAAGACA+TGG | 0.626170 | 3.3:+70997508 | MS.gene75634:CDS |
| GAGAACCACACCCAAAATTG+CGG | 0.633481 | 3.3:-70995869 | None:intergenic |
| AGGGCTCTCCGATTCTCACG+AGG | 0.645915 | 3.3:+70995960 | MS.gene75634:CDS |
| TGGCCGTCAAAGATTACCTG+CGG | 0.666868 | 3.3:+70997591 | MS.gene75634:CDS |
| AATTTGGATTGGGAATTCTG+TGG | 0.685087 | 3.3:+70997426 | MS.gene75634:CDS |
| GGCAGCTCCAGAGTACTCCG+GGG | 0.727870 | 3.3:+70996838 | MS.gene75634:CDS |
| GTAGGCTAGCCATGCCACTG+TGG | 0.748430 | 3.3:-70996544 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTTAATAGATATAGATATA+AGG | - | chr3.3:70997182-70997201 | None:intergenic | 15.0% |
| !! | TTAACATTTCAATATGATAA+CGG | + | chr3.3:70996726-70996745 | MS.gene75634:intron | 15.0% |
| !! | AAAATACATCTATATGAAAC+TGG | + | chr3.3:70996957-70996976 | MS.gene75634:CDS | 20.0% |
| !! | ATAAACTCTTGGAAAATTTA+TGG | + | chr3.3:70996129-70996148 | MS.gene75634:intron | 20.0% |
| !! | TTAATTTCACATCATCTATT+TGG | + | chr3.3:70997469-70997488 | MS.gene75634:CDS | 20.0% |
| !! | TTTATTAATCACAGATATGA+TGG | + | chr3.3:70996804-70996823 | MS.gene75634:CDS | 20.0% |
| !!! | AAATTTGAAACGATTGTTAA+TGG | - | chr3.3:70996015-70996034 | None:intergenic | 20.0% |
| !!! | AATTATATGTTGTTTCTCTT+TGG | - | chr3.3:70996268-70996287 | None:intergenic | 20.0% |
| !!! | GTTTCATATAGATGTATTTT+AGG | - | chr3.3:70996957-70996976 | None:intergenic | 20.0% |
| !!! | TGCAATTTCTAAAAGATTAA+AGG | - | chr3.3:70996922-70996941 | None:intergenic | 20.0% |
| !!! | TTTTTCCTTTATTGAAGAAT+GGG | - | chr3.3:70995773-70995792 | None:intergenic | 20.0% |
| ! | AATGCAGTAATTACTAAGTA+TGG | - | chr3.3:70997643-70997662 | None:intergenic | 25.0% |
| ! | ACAAATTTATCACGTATTTG+AGG | - | chr3.3:70997266-70997285 | None:intergenic | 25.0% |
| ! | ACTCTATACCAATAAGTTTA+TGG | + | chr3.3:70997022-70997041 | MS.gene75634:intron | 25.0% |
| ! | ATATAATGTTGTTACTCTTG+AGG | - | chr3.3:70997230-70997249 | None:intergenic | 25.0% |
| ! | ATGATTAGGAGAAAAGATAT+GGG | - | chr3.3:70996674-70996693 | None:intergenic | 25.0% |
| ! | ATGTCTATCCATAAACTTAT+TGG | - | chr3.3:70997033-70997052 | None:intergenic | 25.0% |
| ! | GAAAAAGAAAGAGATGAAAT+TGG | - | chr3.3:70996886-70996905 | None:intergenic | 25.0% |
| ! | GAATATGAAATGGAATAAGA+GGG | - | chr3.3:70995649-70995668 | None:intergenic | 25.0% |
| ! | TATGATTAGGAGAAAAGATA+TGG | - | chr3.3:70996675-70996694 | None:intergenic | 25.0% |
| ! | TCTAAAAGATTAAAGGTTGA+AGG | - | chr3.3:70996915-70996934 | None:intergenic | 25.0% |
| ! | TTAGACACATTTCTTTCATT+TGG | + | chr3.3:70997328-70997347 | MS.gene75634:intron | 25.0% |
| !! | CTTTTTCCTTTATTGAAGAA+TGG | - | chr3.3:70995774-70995793 | None:intergenic | 25.0% |
| !!! | AGTGGTTTTGAATTTGAATT+TGG | - | chr3.3:70995715-70995734 | None:intergenic | 25.0% |
| !!! | CTAATATTTTTGTCGTAAGA+AGG | + | chr3.3:70997108-70997127 | MS.gene75634:intron | 25.0% |
| !!! | GCTCATTTGTTATTTATGTT+AGG | + | chr3.3:70996051-70996070 | MS.gene75634:intron | 25.0% |
| !!! | TCAATATGATAACGGTTTAA+CGG | + | chr3.3:70996734-70996753 | MS.gene75634:intron | 25.0% |
| !!! | TCGAAATATGTGATTTTGAT+GGG | + | chr3.3:70996332-70996351 | MS.gene75634:intron | 25.0% |
| !!! | TTTCTATTTAGAAGAGCATT+TGG | - | chr3.3:70997289-70997308 | None:intergenic | 25.0% |
| !!! | TTTTGGTTTGGAATATGAAA+TGG | - | chr3.3:70995659-70995678 | None:intergenic | 25.0% |
| AAACCGCAAATATGAGAATT+AGG | - | chr3.3:70996523-70996542 | None:intergenic | 30.0% | |
| AAATCAATTCTGATACTCTC+TGG | - | chr3.3:70996306-70996325 | None:intergenic | 30.0% | |
| AATACTGGTGAGAAAATCAT+TGG | + | chr3.3:70996569-70996588 | MS.gene75634:CDS | 30.0% | |
| AGATTGTTTGAGTGAACTTA+TGG | - | chr3.3:70996183-70996202 | None:intergenic | 30.0% | |
| AGCATTTCGCTTATATGATT+AGG | - | chr3.3:70996688-70996707 | None:intergenic | 30.0% | |
| AGTGTTAAGATTAATACCTG+TGG | - | chr3.3:70997005-70997024 | None:intergenic | 30.0% | |
| ATAAAATCAGGTTTGGGTAT+TGG | - | chr3.3:70996379-70996398 | None:intergenic | 30.0% | |
| CATTACCCATTCTTCAATAA+AGG | + | chr3.3:70995765-70995784 | MS.gene75634:CDS | 30.0% | |
| GAAATGTGTCTAAATAGAGA+AGG | - | chr3.3:70997321-70997340 | None:intergenic | 30.0% | |
| GATCCTAATTCTCATATTTG+CGG | + | chr3.3:70996517-70996536 | MS.gene75634:CDS | 30.0% | |
| GATTAAAGGTTGAAGGATAT+AGG | - | chr3.3:70996908-70996927 | None:intergenic | 30.0% | |
| GGAATATGAAATGGAATAAG+AGG | - | chr3.3:70995650-70995669 | None:intergenic | 30.0% | |
| GTAATTACTGCATTAACACT+AGG | + | chr3.3:70997649-70997668 | MS.gene75634:CDS | 30.0% | |
| TCTTCATTCTAAATGTGGTA+TGG | + | chr3.3:70995890-70995909 | MS.gene75634:CDS | 30.0% | |
| TGAGATTTCGAGATAAAATC+AGG | - | chr3.3:70996391-70996410 | None:intergenic | 30.0% | |
| TGTTAATGGTGAAGTGAAAA+GGG | - | chr3.3:70996001-70996020 | None:intergenic | 30.0% | |
| TTCGAGATAAAATCAGGTTT+GGG | - | chr3.3:70996385-70996404 | None:intergenic | 30.0% | |
| TTGCTCATACAATTTGGATT+GGG | + | chr3.3:70997416-70997435 | MS.gene75634:CDS | 30.0% | |
| TTGTTAATGGTGAAGTGAAA+AGG | - | chr3.3:70996002-70996021 | None:intergenic | 30.0% | |
| TTTCGAGATAAAATCAGGTT+TGG | - | chr3.3:70996386-70996405 | None:intergenic | 30.0% | |
| ! | ATGGATAGACATGATTTTTG+TGG | + | chr3.3:70997041-70997060 | MS.gene75634:intron | 30.0% |
| ! | ATTTATTTCGCCGCAATTTT+GGG | + | chr3.3:70995859-70995878 | MS.gene75634:CDS | 30.0% |
| ! | CTCGAAATATGTGATTTTGA+TGG | + | chr3.3:70996331-70996350 | MS.gene75634:intron | 30.0% |
| ! | GCGAAATGCTTTACTTATTT+TGG | + | chr3.3:70996698-70996717 | MS.gene75634:intron | 30.0% |
| ! | TGATTTTTCATCTATGATGC+AGG | + | chr3.3:70996776-70996795 | MS.gene75634:intron | 30.0% |
| !! | AAGCTGTTTTCATAAACTCT+TGG | + | chr3.3:70996118-70996137 | MS.gene75634:intron | 30.0% |
| !! | GATTTTGATGGGAAAAATAC+TGG | + | chr3.3:70996343-70996362 | MS.gene75634:intron | 30.0% |
| ACAATAGTAGTGACAGCTAA+AGG | - | chr3.3:70996635-70996654 | None:intergenic | 35.0% | |
| CGGAACAGAAAATAACTTCA+TGG | + | chr3.3:70995836-70995855 | MS.gene75634:CDS | 35.0% | |
| CTTGCTCATACAATTTGGAT+TGG | + | chr3.3:70997415-70997434 | MS.gene75634:CDS | 35.0% | |
| GGTTCTCTTCATTCTAAATG+TGG | + | chr3.3:70995885-70995904 | MS.gene75634:CDS | 35.0% | |
| TTCCGTTAAACTAAAAGCTG+CGG | - | chr3.3:70995821-70995840 | None:intergenic | 35.0% | |
| ! | AATTTGGATTGGGAATTCTG+TGG | + | chr3.3:70997426-70997445 | MS.gene75634:CDS | 35.0% |
| ! | ATTGATAACTCAACTGGCTT+TGG | + | chr3.3:70995913-70995932 | MS.gene75634:CDS | 35.0% |
| ! | ATTTGGAGATGAGAAGTATG+AGG | - | chr3.3:70995698-70995717 | None:intergenic | 35.0% |
| ! | GATATGATGGAATTCAACTC+TGG | + | chr3.3:70996817-70996836 | MS.gene75634:CDS | 35.0% |
| ! | GATTTATTTCGCCGCAATTT+TGG | + | chr3.3:70995858-70995877 | MS.gene75634:CDS | 35.0% |
| ! | GTATGGATTGATAACTCAAC+TGG | + | chr3.3:70995907-70995926 | MS.gene75634:CDS | 35.0% |
| ! | GTATTTGAGGATGTTTTACG+AGG | - | chr3.3:70997253-70997272 | None:intergenic | 35.0% |
| ! | TCATTGGTGAAAGAGCTTTT+CGG | + | chr3.3:70996585-70996604 | MS.gene75634:CDS | 35.0% |
| !! | ATGTTGTTTCTCTTTGGCTA+TGG | - | chr3.3:70996262-70996281 | None:intergenic | 35.0% |
| !! | TGTTGTTTCTCTTTGGCTAT+GGG | - | chr3.3:70996261-70996280 | None:intergenic | 35.0% |
| !!! | CTTTTCGGGTTATTTTTGCA+GGG | + | chr3.3:70996600-70996619 | MS.gene75634:CDS | 35.0% |
| !!! | CTTTTGTTGATGCTGTTTCA+GGG | + | chr3.3:70995941-70995960 | MS.gene75634:CDS | 35.0% |
| !!! | GATTTGTTTTGCTGTTCAGA+TGG | + | chr3.3:70997372-70997391 | MS.gene75634:intron | 35.0% |
| !!! | TTGAGAAGTAGGTTTTGGTT+TGG | - | chr3.3:70995671-70995690 | None:intergenic | 35.0% |
| AAGAGGGAGAGAACAAAGAT+GGG | - | chr3.3:70995633-70995652 | None:intergenic | 40.0% | |
| AATCCGCAGGTAATCTTTGA+CGG | - | chr3.3:70997597-70997616 | None:intergenic | 40.0% | |
| AGAGAACAAAGATGGGTGAT+GGG | - | chr3.3:70995626-70995645 | None:intergenic | 40.0% | |
| ATTACCTGCGGATTTCTACA+AGG | + | chr3.3:70997603-70997622 | MS.gene75634:CDS | 40.0% | |
| CAACAATACCTCGTGAGAAT+CGG | - | chr3.3:70995971-70995990 | None:intergenic | 40.0% | |
| CATCAAGGATTGCTGCAAAA+GGG | - | chr3.3:70997573-70997592 | None:intergenic | 40.0% | |
| CTGGCATCATAAGAATAACC+AGG | + | chr3.3:70996976-70996995 | MS.gene75634:CDS | 40.0% | |
| GGTGTCTTGCTCATACAATT+TGG | + | chr3.3:70997410-70997429 | MS.gene75634:CDS | 40.0% | |
| TAAGAGGGAGAGAACAAAGA+TGG | - | chr3.3:70995634-70995653 | None:intergenic | 40.0% | |
| ! | ACTCTTGAGGATGTTTTACG+AGG | - | chr3.3:70997217-70997236 | None:intergenic | 40.0% |
| ! | AGAAGCAGAGAGTATAAGAG+AGG | - | chr3.3:70995593-70995612 | None:intergenic | 40.0% |
| ! | ATATTTGCGGTTTTCCACAG+TGG | + | chr3.3:70996530-70996549 | MS.gene75634:CDS | 40.0% |
| ! | CATTGGTGAAAGAGCTTTTC+GGG | + | chr3.3:70996586-70996605 | MS.gene75634:CDS | 40.0% |
| ! | GTTTCAATTGCTCTGAGTGA+AGG | + | chr3.3:70997350-70997369 | MS.gene75634:intron | 40.0% |
| ! | TTTTCTCACCAGTATTCCGT+AGG | - | chr3.3:70996565-70996584 | None:intergenic | 40.0% |
| !! | CACATCATCTATTTGGTGCT+TGG | + | chr3.3:70997476-70997495 | MS.gene75634:CDS | 40.0% |
| !! | CATCTATTTGGTGCTTGGAA+TGG | + | chr3.3:70997481-70997500 | MS.gene75634:CDS | 40.0% |
| !! | CTGCATTAGTCGTTGATTTG+TGG | + | chr3.3:70996457-70996476 | MS.gene75634:intron | 40.0% |
| !!! | CTCCGCAGCTTTTAGTTTAA+CGG | + | chr3.3:70995816-70995835 | MS.gene75634:CDS | 40.0% |
| !!! | GCTTTTCGGGTTATTTTTGC+AGG | + | chr3.3:70996599-70996618 | MS.gene75634:CDS | 40.0% |
| !!! | GCTTTTGTTGATGCTGTTTC+AGG | + | chr3.3:70995940-70995959 | MS.gene75634:CDS | 40.0% |
| !!! | TGTTTTGCTGTTCAGATGGT+TGG | + | chr3.3:70997376-70997395 | MS.gene75634:intron | 40.0% |
| AAACTAGCAGCCTGCATAAG+AGG | - | chr3.3:70997691-70997710 | None:intergenic | 45.0% | |
| AACCACTATCTCTCTCTCAC+AGG | + | chr3.3:70995728-70995747 | MS.gene75634:CDS | 45.0% | |
| AACCTGTGAGAGAGAGATAG+TGG | - | chr3.3:70995733-70995752 | None:intergenic | 45.0% | |
| AACTAGCAGCCTGCATAAGA+GGG | - | chr3.3:70997690-70997709 | None:intergenic | 45.0% | |
| AACTCCTTGTAGAAATCCGC+AGG | - | chr3.3:70997610-70997629 | None:intergenic | 45.0% | |
| AAGAATAACCAGGCATCCAC+AGG | + | chr3.3:70996986-70997005 | MS.gene75634:CDS | 45.0% | |
| ACCTGCAGAGTAACATGTCA+AGG | - | chr3.3:70996488-70996507 | None:intergenic | 45.0% | |
| CCATCAAGGATTGCTGCAAA+AGG | - | chr3.3:70997574-70997593 | None:intergenic | 45.0% | |
| CCTGCAGAGTAACATGTCAA+GGG | - | chr3.3:70996487-70996506 | None:intergenic | 45.0% | |
| GAAAAAGACTCGAGCTTCGT+GGG | + | chr3.3:70995787-70995806 | MS.gene75634:CDS | 45.0% | |
| GAGAACCACACCCAAAATTG+CGG | - | chr3.3:70995872-70995891 | None:intergenic | 45.0% | |
| GAGAGAACAAAGATGGGTGA+TGG | - | chr3.3:70995627-70995646 | None:intergenic | 45.0% | |
| GATTAATACCTGTGGATGCC+TGG | - | chr3.3:70996997-70997016 | None:intergenic | 45.0% | |
| GTAATCTTTGACGGCCATCA+AGG | - | chr3.3:70997588-70997607 | None:intergenic | 45.0% | |
| TCTCTCACAGGTTCAACTTC+AGG | + | chr3.3:70995740-70995759 | MS.gene75634:CDS | 45.0% | |
| TTGACATGTTACTCTGCAGG+TGG | + | chr3.3:70996487-70996506 | MS.gene75634:intron | 45.0% | |
| ! | AGATGGTTGGTCAGGTAATC+TGG | + | chr3.3:70997389-70997408 | MS.gene75634:intron | 45.0% |
| ! | AGGCGATTAGCTCAAAGACA+TGG | + | chr3.3:70997508-70997527 | MS.gene75634:CDS | 45.0% |
| ! | CCTTTTGCAGCAATCCTTGA+TGG | + | chr3.3:70997571-70997590 | MS.gene75634:CDS | 45.0% |
| ! | CTGCTAGTTTCAACCTCCAT+TGG | + | chr3.3:70997701-70997720 | MS.gene75634:CDS | 45.0% |
| ! | TTGGTGCTTGGAATGGAGAT+AGG | + | chr3.3:70997488-70997507 | MS.gene75634:CDS | 45.0% |
| !! | AACAAAGATGGGTGATGGGT+TGG | - | chr3.3:70995622-70995641 | None:intergenic | 45.0% |
| !! | CACAGAAGTTGATGAATCCC+CGG | - | chr3.3:70996858-70996877 | None:intergenic | 45.0% |
| !! | TATGAGGAGCGTTGAGAAGT+AGG | - | chr3.3:70995682-70995701 | None:intergenic | 45.0% |
| !!! | GAGCGTTGAGAAGTAGGTTT+TGG | - | chr3.3:70995676-70995695 | None:intergenic | 45.0% |
| CCCTTGACATGTTACTCTGC+AGG | + | chr3.3:70996484-70996503 | MS.gene75634:intron | 50.0% | |
| CGGGGATTCATCAACTTCTG+TGG | + | chr3.3:70996856-70996875 | MS.gene75634:CDS | 50.0% | |
| CTTTGCACACCCTCTTATGC+AGG | + | chr3.3:70997678-70997697 | MS.gene75634:CDS | 50.0% | |
| GGAAAAAGACTCGAGCTTCG+TGG | + | chr3.3:70995786-70995805 | MS.gene75634:CDS | 50.0% | |
| GTGGCTGTTGCAGCTTCAAT+TGG | + | chr3.3:70997445-70997464 | MS.gene75634:CDS | 50.0% | |
| TGGCCGTCAAAGATTACCTG+CGG | + | chr3.3:70997591-70997610 | MS.gene75634:CDS | 50.0% | |
| ! | TGCTGTTCAGATGGTTGGTC+AGG | + | chr3.3:70997381-70997400 | MS.gene75634:intron | 50.0% |
| !! | ATGGCTAGCCTACGGAATAC+TGG | + | chr3.3:70996554-70996573 | MS.gene75634:CDS | 50.0% |
| !! | TTTCGCCGCAATTTTGGGTG+TGG | + | chr3.3:70995864-70995883 | MS.gene75634:CDS | 50.0% |
| ! | GATGAATCCCCGGAGTACTC+TGG | - | chr3.3:70996848-70996867 | None:intergenic | 55.0% |
| ! | TGCGGTTTTCCACAGTGGCA+TGG | + | chr3.3:70996535-70996554 | MS.gene75634:CDS | 55.0% |
| !! | ACAGTGGCATGGCTAGCCTA+CGG | + | chr3.3:70996546-70996565 | MS.gene75634:CDS | 55.0% |
| AGGGCTCTCCGATTCTCACG+AGG | + | chr3.3:70995960-70995979 | MS.gene75634:CDS | 60.0% | |
| ! | CTGGCAGCTCCAGAGTACTC+CGG | + | chr3.3:70996836-70996855 | MS.gene75634:CDS | 60.0% |
| ! | GTAGGCTAGCCATGCCACTG+TGG | - | chr3.3:70996547-70996566 | None:intergenic | 60.0% |
| ! | TGGCAGCTCCAGAGTACTCC+GGG | + | chr3.3:70996837-70996856 | MS.gene75634:CDS | 60.0% |
| ! | GGCAGCTCCAGAGTACTCCG+GGG | + | chr3.3:70996838-70996857 | MS.gene75634:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 70995583 | 70997726 | 70995583 | ID=MS.gene75634 |
| chr3.3 | mRNA | 70995583 | 70997726 | 70995583 | ID=MS.gene75634.t1;Parent=MS.gene75634 |
| chr3.3 | exon | 70995583 | 70995981 | 70995583 | ID=MS.gene75634.t1.exon1;Parent=MS.gene75634.t1 |
| chr3.3 | CDS | 70995583 | 70995981 | 70995583 | ID=cds.MS.gene75634.t1;Parent=MS.gene75634.t1 |
| chr3.3 | exon | 70996506 | 70996652 | 70996506 | ID=MS.gene75634.t1.exon2;Parent=MS.gene75634.t1 |
| chr3.3 | CDS | 70996506 | 70996652 | 70996506 | ID=cds.MS.gene75634.t1;Parent=MS.gene75634.t1 |
| chr3.3 | exon | 70996798 | 70997007 | 70996798 | ID=MS.gene75634.t1.exon3;Parent=MS.gene75634.t1 |
| chr3.3 | CDS | 70996798 | 70997007 | 70996798 | ID=cds.MS.gene75634.t1;Parent=MS.gene75634.t1 |
| chr3.3 | exon | 70997391 | 70997726 | 70997391 | ID=MS.gene75634.t1.exon4;Parent=MS.gene75634.t1 |
| chr3.3 | CDS | 70997391 | 70997726 | 70997391 | ID=cds.MS.gene75634.t1;Parent=MS.gene75634.t1 |
| Gene Sequence |
| Protein sequence |
