Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95049.t1 | XP_013458716.1 | 96.7 | 706 | 21 | 1 | 1 | 704 | 1 | 706 | 0.00E+00 | 1196.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95049.t1 | Q9LTY1 | 60.2 | 726 | 265 | 6 | 1 | 703 | 1 | 725 | 1.1e-218 | 761.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95049.t1 | A0A072UUK2 | 96.7 | 706 | 21 | 1 | 1 | 704 | 1 | 706 | 0.0e+00 | 1196.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene95049 | 0.819044 | 1.43E-52 | -1.69E-46 |
| MS.gene049166 | MS.gene95049 | 0.82104 | 4.99E-53 | -1.69E-46 |
| MS.gene04918 | MS.gene95049 | 0.818533 | 1.86E-52 | -1.69E-46 |
| MS.gene04920 | MS.gene95049 | 0.803875 | 2.83E-49 | -1.69E-46 |
| MS.gene049283 | MS.gene95049 | 0.860286 | 2.30E-63 | -1.69E-46 |
| MS.gene049368 | MS.gene95049 | 0.828669 | 7.90E-55 | -1.69E-46 |
| MS.gene049411 | MS.gene95049 | 0.810681 | 1.02E-50 | -1.69E-46 |
| MS.gene049499 | MS.gene95049 | 0.802661 | 5.05E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene95049 | 0.833546 | 5.01E-56 | -1.69E-46 |
| MS.gene050084 | MS.gene95049 | 0.822603 | 2.17E-53 | -1.69E-46 |
| MS.gene050085 | MS.gene95049 | 0.843752 | 1.15E-58 | -1.69E-46 |
| MS.gene050213 | MS.gene95049 | 0.827241 | 1.74E-54 | -1.69E-46 |
| MS.gene050359 | MS.gene95049 | 0.817841 | 2.67E-52 | -1.69E-46 |
| MS.gene050414 | MS.gene95049 | 0.820943 | 5.25E-53 | -1.69E-46 |
| MS.gene050551 | MS.gene95049 | 0.823359 | 1.45E-53 | -1.69E-46 |
| MS.gene050646 | MS.gene95049 | 0.838716 | 2.44E-57 | -1.69E-46 |
| MS.gene050654 | MS.gene95049 | 0.832491 | 9.17E-56 | -1.69E-46 |
| MS.gene050689 | MS.gene95049 | 0.823415 | 1.40E-53 | -1.69E-46 |
| MS.gene050752 | MS.gene95049 | 0.815164 | 1.06E-51 | -1.69E-46 |
| MS.gene050838 | MS.gene95049 | 0.85528 | 7.01E-62 | -1.69E-46 |
| MS.gene050931 | MS.gene95049 | 0.830902 | 2.26E-55 | -1.69E-46 |
| MS.gene050945 | MS.gene95049 | 0.83923 | 1.79E-57 | -1.69E-46 |
| MS.gene051003 | MS.gene95049 | 0.89313 | 8.37E-75 | -1.69E-46 |
| MS.gene051043 | MS.gene95049 | 0.816892 | 4.37E-52 | -1.69E-46 |
| MS.gene051233 | MS.gene95049 | 0.813158 | 2.95E-51 | -1.69E-46 |
| MS.gene051234 | MS.gene95049 | 0.869369 | 3.26E-66 | -1.69E-46 |
| MS.gene051343 | MS.gene95049 | 0.848301 | 6.69E-60 | -1.69E-46 |
| MS.gene051381 | MS.gene95049 | 0.815475 | 9.07E-52 | -1.69E-46 |
| MS.gene051676 | MS.gene95049 | 0.8037 | 3.08E-49 | -1.69E-46 |
| MS.gene05188 | MS.gene95049 | 0.808726 | 2.69E-50 | -1.69E-46 |
| MS.gene051902 | MS.gene95049 | 0.81622 | 6.19E-52 | -1.69E-46 |
| MS.gene051975 | MS.gene95049 | 0.826061 | 3.34E-54 | -1.69E-46 |
| MS.gene052016 | MS.gene95049 | 0.815781 | 7.75E-52 | -1.69E-46 |
| MS.gene052072 | MS.gene95049 | 0.87347 | 1.43E-67 | -1.69E-46 |
| MS.gene052242 | MS.gene95049 | -0.800775 | 1.23E-48 | -1.69E-46 |
| MS.gene052296 | MS.gene95049 | 0.811974 | 5.35E-51 | -1.69E-46 |
| MS.gene052307 | MS.gene95049 | 0.820427 | 6.90E-53 | -1.69E-46 |
| MS.gene052342 | MS.gene95049 | 0.844082 | 9.42E-59 | -1.69E-46 |
| MS.gene052434 | MS.gene95049 | 0.809418 | 1.91E-50 | -1.69E-46 |
| MS.gene052609 | MS.gene95049 | 0.818465 | 1.93E-52 | -1.69E-46 |
| MS.gene052776 | MS.gene95049 | 0.810363 | 1.20E-50 | -1.69E-46 |
| MS.gene053058 | MS.gene95049 | 0.839691 | 1.36E-57 | -1.69E-46 |
| MS.gene053079 | MS.gene95049 | 0.847851 | 8.90E-60 | -1.69E-46 |
| MS.gene053143 | MS.gene95049 | 0.832517 | 9.04E-56 | -1.69E-46 |
| MS.gene053167 | MS.gene95049 | 0.801209 | 1.00E-48 | -1.69E-46 |
| MS.gene05364 | MS.gene95049 | 0.83853 | 2.72E-57 | -1.69E-46 |
| MS.gene053786 | MS.gene95049 | 0.828644 | 8.02E-55 | -1.69E-46 |
| MS.gene053895 | MS.gene95049 | -0.81193 | 5.47E-51 | -1.69E-46 |
| MS.gene053931 | MS.gene95049 | 0.823288 | 1.50E-53 | -1.69E-46 |
| MS.gene054004 | MS.gene95049 | 0.835642 | 1.49E-56 | -1.69E-46 |
| MS.gene054178 | MS.gene95049 | 0.817883 | 2.62E-52 | -1.69E-46 |
| MS.gene054403 | MS.gene95049 | 0.815478 | 9.05E-52 | -1.69E-46 |
| MS.gene054413 | MS.gene95049 | 0.801081 | 1.07E-48 | -1.69E-46 |
| MS.gene055221 | MS.gene95049 | 0.804335 | 2.27E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene95049 | 0.851779 | 7.11E-61 | -1.69E-46 |
| MS.gene056045 | MS.gene95049 | 0.814139 | 1.79E-51 | -1.69E-46 |
| MS.gene056097 | MS.gene95049 | 0.835228 | 1.90E-56 | -1.69E-46 |
| MS.gene056181 | MS.gene95049 | 0.873142 | 1.85E-67 | -1.69E-46 |
| MS.gene056578 | MS.gene95049 | 0.808662 | 2.77E-50 | -1.69E-46 |
| MS.gene056787 | MS.gene95049 | 0.810004 | 1.43E-50 | -1.69E-46 |
| MS.gene056986 | MS.gene95049 | 0.802856 | 4.60E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene95049 | 0.827334 | 1.66E-54 | -1.69E-46 |
| MS.gene05781 | MS.gene95049 | 0.807451 | 5.02E-50 | -1.69E-46 |
| MS.gene057890 | MS.gene95049 | -0.832399 | 9.66E-56 | -1.69E-46 |
| MS.gene058054 | MS.gene95049 | 0.829641 | 4.59E-55 | -1.69E-46 |
| MS.gene058149 | MS.gene95049 | 0.831997 | 1.22E-55 | -1.69E-46 |
| MS.gene058261 | MS.gene95049 | 0.813687 | 2.26E-51 | -1.69E-46 |
| MS.gene058292 | MS.gene95049 | 0.83222 | 1.07E-55 | -1.69E-46 |
| MS.gene058638 | MS.gene95049 | 0.806808 | 6.87E-50 | -1.69E-46 |
| MS.gene058639 | MS.gene95049 | 0.812085 | 5.06E-51 | -1.69E-46 |
| MS.gene059007 | MS.gene95049 | 0.81795 | 2.53E-52 | -1.69E-46 |
| MS.gene059146 | MS.gene95049 | 0.871979 | 4.52E-67 | -1.69E-46 |
| MS.gene059170 | MS.gene95049 | 0.833448 | 5.30E-56 | -1.69E-46 |
| MS.gene059778 | MS.gene95049 | 0.848683 | 5.24E-60 | -1.69E-46 |
| MS.gene05985 | MS.gene95049 | -0.810227 | 1.28E-50 | -1.69E-46 |
| MS.gene059901 | MS.gene95049 | -0.808515 | 2.98E-50 | -1.69E-46 |
| MS.gene06011 | MS.gene95049 | 0.805209 | 1.49E-49 | -1.69E-46 |
| MS.gene060563 | MS.gene95049 | 0.801028 | 1.09E-48 | -1.69E-46 |
| MS.gene060763 | MS.gene95049 | 0.836295 | 1.02E-56 | -1.69E-46 |
| MS.gene060933 | MS.gene95049 | 0.840272 | 9.61E-58 | -1.69E-46 |
| MS.gene060935 | MS.gene95049 | 0.830513 | 2.81E-55 | -1.69E-46 |
| MS.gene060937 | MS.gene95049 | 0.844655 | 6.61E-59 | -1.69E-46 |
| MS.gene061006 | MS.gene95049 | 0.825093 | 5.66E-54 | -1.69E-46 |
| MS.gene061100 | MS.gene95049 | 0.875223 | 3.65E-68 | -1.69E-46 |
| MS.gene061160 | MS.gene95049 | 0.821691 | 3.53E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene95049 | MS.gene99360 | PPI |
| MS.gene95049 | MS.gene021252 | PPI |
| MS.gene02013 | MS.gene95049 | PPI |
| MS.gene79126 | MS.gene95049 | PPI |
| MS.gene02011 | MS.gene95049 | PPI |
| MS.gene95049 | MS.gene03802 | PPI |
| MS.gene78111 | MS.gene95049 | PPI |
| MS.gene067039 | MS.gene95049 | PPI |
| MS.gene66800 | MS.gene95049 | PPI |
| MS.gene003211 | MS.gene95049 | PPI |
| MS.gene045227 | MS.gene95049 | PPI |
| MS.gene95049 | MS.gene02806 | PPI |
| MS.gene75567 | MS.gene95049 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95049.t1 | MTR_4g134640 | 96.884 | 706 | 20 | 1 | 1 | 704 | 1 | 706 | 0.0 | 1382 |
| MS.gene95049.t1 | MTR_4g134640 | 96.955 | 624 | 19 | 0 | 81 | 704 | 3 | 626 | 0.0 | 1212 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95049.t1 | AT5G49880 | 62.534 | 726 | 248 | 6 | 1 | 703 | 1 | 725 | 0.0 | 875 |
Find 131 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCACTCTCAGCTCATTTA+AGG | 0.127080 | 8.2:-212885 | None:intergenic |
| AGCTTCACCATTCTTCAAAT+TGG | 0.225489 | 8.2:-212681 | None:intergenic |
| ATCAGGGAATACCAACATTT+TGG | 0.238178 | 8.2:+215450 | MS.gene95049:CDS |
| TGCGAAGGTTTGTCTCATTT+TGG | 0.238880 | 8.2:-209236 | None:intergenic |
| CGATCATTCACAACTTAAAA+AGG | 0.261097 | 8.2:+209368 | MS.gene95049:CDS |
| TTCTACAGGGAGTGATGTTT+TGG | 0.261658 | 8.2:+209769 | MS.gene95049:CDS |
| CAGCACTTCTATGGTTTGTT+TGG | 0.266549 | 8.2:-213936 | None:intergenic |
| CTTGAATTTGAATATGAATC+AGG | 0.287905 | 8.2:+215433 | MS.gene95049:CDS |
| TTGAACTGTTTAGGAGAAAC+TGG | 0.306116 | 8.2:+214622 | MS.gene95049:intron |
| GGAAATTATGATTGAGTGTT+TGG | 0.313529 | 8.2:-208967 | None:intergenic |
| TTCAGAGATATCATTATTAG+AGG | 0.326892 | 8.2:+213006 | MS.gene95049:CDS |
| GACAAAGCAACATCTTTAGA+AGG | 0.333909 | 8.2:+209291 | MS.gene95049:CDS |
| CTAAAGATGTTGCTTTGTCT+TGG | 0.341234 | 8.2:-209287 | None:intergenic |
| GAAACAACTGGAGGTGGCTT+TGG | 0.341324 | 8.2:+211790 | MS.gene95049:CDS |
| CATTGCAAACCTCTTTGAAT+TGG | 0.351624 | 8.2:-209584 | None:intergenic |
| TCAATTAAACACTGAACTTC+AGG | 0.351637 | 8.2:+209206 | MS.gene95049:CDS |
| GCTCAGATTGTGCCCTTTCC+CGG | 0.364509 | 8.2:-211068 | None:intergenic |
| CTTGTTGTAGCTTGAACAAA+TGG | 0.366662 | 8.2:+209494 | MS.gene95049:intron |
| AGTCCATTAAATTTATGATA+AGG | 0.377997 | 8.2:-216871 | None:intergenic |
| TCCCAGGAAGTTTCTTCTAC+AGG | 0.379616 | 8.2:+209755 | MS.gene95049:CDS |
| TATTAAAATCAGAGATTAAA+CGG | 0.384162 | 8.2:+211879 | MS.gene95049:CDS |
| AACTGCTCGCTTGAAACAAC+TGG | 0.389194 | 8.2:+211778 | MS.gene95049:CDS |
| ATTCTTGCCAATTTGAAGAA+TGG | 0.390364 | 8.2:+212674 | MS.gene95049:CDS |
| TAAAGATGTTGCTTTGTCTT+GGG | 0.400406 | 8.2:-209286 | None:intergenic |
| TCCCTGTAGAAGAAACTTCC+TGG | 0.401242 | 8.2:-209757 | None:intergenic |
| CTTTGAATTGGTCCTTAAGA+TGG | 0.406182 | 8.2:-209572 | None:intergenic |
| GATTAAACGGATTGAATTAA+CGG | 0.416637 | 8.2:+211892 | MS.gene95049:CDS |
| TCATCGGAACGTGGCCTCTT+CGG | 0.417235 | 8.2:-208696 | None:intergenic |
| TGCTTTGTCTTGGGCGGAAG+CGG | 0.418194 | 8.2:-209277 | None:intergenic |
| TTTGGTTAAACAATTGCAAC+AGG | 0.422570 | 8.2:+209787 | MS.gene95049:CDS |
| AGAGCAACTGGACCATCTTA+AGG | 0.435575 | 8.2:+209560 | MS.gene95049:CDS |
| GCTTTGGATGCTGCTGAGAT+TGG | 0.436789 | 8.2:+211806 | MS.gene95049:CDS |
| GATGAACACCAGCGATCAAA+TGG | 0.439362 | 8.2:+215352 | MS.gene95049:CDS |
| TTGTTTGGCTTCATTATCTA+CGG | 0.458408 | 8.2:-213921 | None:intergenic |
| GGATCCGGCGGCAGCGGTGG+AGG | 0.459538 | 8.2:+208746 | MS.gene95049:CDS |
| GAAGAATTGAAGAGTCAATC+AGG | 0.460323 | 8.2:+214001 | MS.gene95049:CDS |
| AGACCTGCTTAAAGAGCAAC+TGG | 0.463462 | 8.2:+209548 | MS.gene95049:CDS |
| AAGTAGTGCTAATCCCATTC+AGG | 0.466808 | 8.2:+212715 | MS.gene95049:CDS |
| GAGGGAAATACAACCTGAAT+GGG | 0.468113 | 8.2:-212728 | None:intergenic |
| TGCTGGAGGAAAAGAGCTGC+CGG | 0.470660 | 8.2:+211049 | MS.gene95049:CDS |
| CAAGAACTCGCTGCTTCTAA+AGG | 0.472308 | 8.2:+209111 | MS.gene95049:CDS |
| TCTTCGGTGGCGGAGGAGTA+CGG | 0.473231 | 8.2:-208680 | None:intergenic |
| CGTGGCCTCTTCGGTGGCGG+AGG | 0.474010 | 8.2:-208687 | None:intergenic |
| ACTCCAGGATCAACTCTTGA+AGG | 0.475492 | 8.2:+209146 | MS.gene95049:CDS |
| AGGAAAAGAGCTGCCGGGAA+AGG | 0.476342 | 8.2:+211055 | MS.gene95049:CDS |
| AAGCAGGTCTGCTTCTCTCT+CGG | 0.477842 | 8.2:-209535 | None:intergenic |
| GATTCTAGAAATAGAAAAGT+TGG | 0.479879 | 8.2:-209394 | None:intergenic |
| CACTGGAGAGGGAGAGTGAC+CGG | 0.480225 | 8.2:+212978 | MS.gene95049:CDS |
| TGTAAAGCTGCAAATTTAGC+AGG | 0.480888 | 8.2:-211201 | None:intergenic |
| AGAGGGAAATACAACCTGAA+TGG | 0.481847 | 8.2:-212729 | None:intergenic |
| CACATATCAGTGTCGCCAAA+TGG | 0.482171 | 8.2:+208791 | MS.gene95049:CDS |
| CTATGAGGATCCGGCGGCAG+CGG | 0.485300 | 8.2:+208740 | MS.gene95049:CDS |
| CTGGAATTCCATTTGATCGC+TGG | 0.486148 | 8.2:-215360 | None:intergenic |
| TCAGCCTGAGGTATCTCGTC+AGG | 0.487574 | 8.2:+215669 | MS.gene95049:CDS |
| GGAAAAGAGCTGCCGGGAAA+GGG | 0.488404 | 8.2:+211056 | MS.gene95049:CDS |
| AAGAATAAAGTCACTGGAGA+GGG | 0.490630 | 8.2:+212967 | MS.gene95049:CDS |
| TGCTTCTAAAGGCCGTGAAA+AGG | 0.491539 | 8.2:+209122 | MS.gene95049:CDS |
| CCCAGGTTGAGATATTCGTT+CGG | 0.491573 | 8.2:+216787 | MS.gene95049:intron |
| GGTTCCTCCACCGCTGCCGC+CGG | 0.494163 | 8.2:-208750 | None:intergenic |
| ATCTGAGCTATCTAAACTAC+AGG | 0.495023 | 8.2:+211083 | MS.gene95049:CDS |
| TGAGGATCCGGCGGCAGCGG+TGG | 0.495529 | 8.2:+208743 | MS.gene95049:CDS |
| GGTCCAGTTGCTCTTTAAGC+AGG | 0.500008 | 8.2:-209551 | None:intergenic |
| GTATCTTAATTTCCTCATGT+TGG | 0.507329 | 8.2:-212916 | None:intergenic |
| CCCAGGAAGTTTCTTCTACA+GGG | 0.507888 | 8.2:+209756 | MS.gene95049:CDS |
| AAGCTGTGCGTCGCCGTCAT+CGG | 0.508108 | 8.2:-208712 | None:intergenic |
| GAACGTGGCCTCTTCGGTGG+CGG | 0.508356 | 8.2:-208690 | None:intergenic |
| GATATCATTATTAGAGGCAA+AGG | 0.509270 | 8.2:+213012 | MS.gene95049:CDS |
| GCTTGTTATCTATGAGGATC+CGG | 0.510386 | 8.2:+208731 | MS.gene95049:CDS |
| AGGCCGTGAAAAGGCACTCC+AGG | 0.512926 | 8.2:+209131 | MS.gene95049:CDS |
| TTCCTTCTACAGTTAGGTCA+TGG | 0.513722 | 8.2:+213848 | MS.gene95049:intron |
| AAATCTCACAGCACGCCCTC+CGG | 0.515186 | 8.2:-214852 | None:intergenic |
| TCAACATCTTACCAAAATGT+TGG | 0.516170 | 8.2:-215461 | None:intergenic |
| TTGAATTTGAATATGAATCA+GGG | 0.517570 | 8.2:+215434 | MS.gene95049:CDS |
| TGCAGCGTAAATCGTGTCAC+TGG | 0.518433 | 8.2:-215379 | None:intergenic |
| TGCTGAAACTGAAGCTGTGT+TGG | 0.522026 | 8.2:+211838 | MS.gene95049:CDS |
| GAAAGACTCCACTGTTATGT+TGG | 0.523713 | 8.2:-216838 | None:intergenic |
| TTTAGGAGAAACTGGAAAGC+TGG | 0.527669 | 8.2:+214630 | MS.gene95049:intron |
| TCTCTATGGTCTCTGAAAGA+TGG | 0.530121 | 8.2:-209323 | None:intergenic |
| GGCGGAAGCGGCATGAGACT+CGG | 0.530624 | 8.2:-209265 | None:intergenic |
| GTTATGTTGGCAGTAAAAGC+AGG | 0.531953 | 8.2:-216825 | None:intergenic |
| GCTGGTGGAGAGCTACATAT+CGG | 0.532673 | 8.2:+214648 | MS.gene95049:CDS |
| AGCAAGAAGAATAAAGTCAC+TGG | 0.533486 | 8.2:+212961 | MS.gene95049:CDS |
| CGCACAGCTTGTTATCTATG+AGG | 0.533714 | 8.2:+208725 | MS.gene95049:CDS |
| ACCTGGCATCTCATGTTTCG+AGG | 0.534847 | 8.2:+211173 | MS.gene95049:CDS |
| CCTCCTTCAAGAGTTGATCC+TGG | 0.535275 | 8.2:-209149 | None:intergenic |
| ATGATATCTCTGAACGGAGC+CGG | 0.537996 | 8.2:-212997 | None:intergenic |
| ACATTGACAACTTACATTAG+CGG | 0.540144 | 8.2:-209418 | None:intergenic |
| AAGAGGCCACGTTCCGATGA+CGG | 0.543240 | 8.2:+208699 | MS.gene95049:CDS |
| TCCTCGAAACATGAGATGCC+AGG | 0.545495 | 8.2:-211174 | None:intergenic |
| TGAAATTCTGTCTGCAAACA+CGG | 0.545580 | 8.2:-214824 | None:intergenic |
| AATTTGAAGAATGGTGAAGC+TGG | 0.552951 | 8.2:+212683 | MS.gene95049:CDS |
| TCGCTTGAAACAACTGGAGG+TGG | 0.553739 | 8.2:+211784 | MS.gene95049:CDS |
| CTATATTTGGCAGATTGTGA+TGG | 0.562845 | 8.2:+215330 | MS.gene95049:intron |
| CCCTGTAGAAGAAACTTCCT+GGG | 0.564281 | 8.2:-209756 | None:intergenic |
| TAGAGGATCAAATATCATCA+TGG | 0.572164 | 8.2:+211130 | MS.gene95049:CDS |
| ACATCTTTAGAAGGGAAGCT+AGG | 0.573337 | 8.2:+209300 | MS.gene95049:CDS |
| TCGGAACGTGGCCTCTTCGG+TGG | 0.574434 | 8.2:-208693 | None:intergenic |
| CTTACCTGACGAGATACCTC+AGG | 0.581003 | 8.2:-215673 | None:intergenic |
| GTGCATAGCATGTGCTCGGA+GGG | 0.581042 | 8.2:-208771 | None:intergenic |
| GTACTCCTCCGCCACCGAAG+AGG | 0.584759 | 8.2:+208682 | MS.gene95049:CDS |
| ACAAAGCAACATCTTTAGAA+GGG | 0.593342 | 8.2:+209292 | MS.gene95049:CDS |
| GCTGGAGGAAAAGAGCTGCC+GGG | 0.594033 | 8.2:+211050 | MS.gene95049:CDS |
| AATTTACAGTACACAGAAGG+AGG | 0.597563 | 8.2:+211748 | MS.gene95049:CDS |
| TCTTAAGGACCAATTCAAAG+AGG | 0.599055 | 8.2:+209575 | MS.gene95049:CDS |
| GGTAATTTACAGTACACAGA+AGG | 0.606067 | 8.2:+211745 | MS.gene95049:CDS |
| CACCTTAAATGAGCTGAGAG+TGG | 0.608157 | 8.2:+212883 | MS.gene95049:CDS |
| GAGACTCGGCTTGTATGCGA+AGG | 0.619176 | 8.2:-209251 | None:intergenic |
| GGTTAATAATCGCCAACATG+AGG | 0.626687 | 8.2:+212904 | MS.gene95049:CDS |
| GCGTCGCCGTCATCGGAACG+TGG | 0.627800 | 8.2:-208705 | None:intergenic |
| AGATGTTGCTTTGTCTTGGG+CGG | 0.631632 | 8.2:-209283 | None:intergenic |
| GAAGAATAAAGTCACTGGAG+AGG | 0.635917 | 8.2:+212966 | MS.gene95049:CDS |
| AGTACACAGAAGGAGGGTGA+AGG | 0.638528 | 8.2:+211755 | MS.gene95049:CDS |
| CACTAGAGAAGCGAGAAGAG+AGG | 0.638861 | 8.2:+214704 | MS.gene95049:CDS |
| CTAATAATGATATCTCTGAA+CGG | 0.639682 | 8.2:-213003 | None:intergenic |
| TAATACAAAAGTTCTGCGGA+TGG | 0.640306 | 8.2:+213886 | MS.gene95049:CDS |
| AGGAGAAACTGGAAAGCTGG+TGG | 0.645216 | 8.2:+214633 | MS.gene95049:intron |
| ATATGTGCATAGCATGTGCT+CGG | 0.645443 | 8.2:-208775 | None:intergenic |
| CACTGAGAGGAAGAAATCTG+TGG | 0.647981 | 8.2:+209068 | MS.gene95049:CDS |
| TTTGAAGGAGAAACTGCTGG+AGG | 0.658729 | 8.2:+211035 | MS.gene95049:CDS |
| TGCTCGCTTGAAACAACTGG+AGG | 0.661475 | 8.2:+211781 | MS.gene95049:CDS |
| TGTGCATAGCATGTGCTCGG+AGG | 0.667920 | 8.2:-208772 | None:intergenic |
| TCTTTCAGAGACCATAGAGA+GGG | 0.673302 | 8.2:+209326 | MS.gene95049:CDS |
| ATGACATGACAGACACTGAG+AGG | 0.677214 | 8.2:+209055 | MS.gene95049:intron |
| TCATTACACATCTCAGCCTG+AGG | 0.681344 | 8.2:+215657 | MS.gene95049:CDS |
| CCAGGATCAACTCTTGAAGG+AGG | 0.683215 | 8.2:+209149 | MS.gene95049:CDS |
| CTGCTAATACAAAAGTTCTG+CGG | 0.683446 | 8.2:+213882 | MS.gene95049:CDS |
| GCAGCTAGCAGTTGTCACAG+AGG | 0.683964 | 8.2:+212634 | MS.gene95049:intron |
| ATTTACAGTACACAGAAGGA+GGG | 0.690417 | 8.2:+211749 | MS.gene95049:CDS |
| TGTTATCTATGAGGATCCGG+CGG | 0.704459 | 8.2:+208734 | MS.gene95049:CDS |
| ATCTTTCAGAGACCATAGAG+AGG | 0.704981 | 8.2:+209325 | MS.gene95049:CDS |
| TTGATGATTAAAGACATACC+TGG | 0.713365 | 8.2:+211156 | MS.gene95049:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 208672 | 216881 | 208672 | ID=MS.gene95049 |
| chr8.2 | mRNA | 208672 | 216881 | 208672 | ID=MS.gene95049.t1;Parent=MS.gene95049 |
| chr8.2 | exon | 208672 | 208812 | 208672 | ID=MS.gene95049.t1.exon1;Parent=MS.gene95049.t1 |
| chr8.2 | CDS | 208672 | 208812 | 208672 | ID=cds.MS.gene95049.t1;Parent=MS.gene95049.t1 |
| chr8.2 | exon | 208899 | 208998 | 208899 | ID=MS.gene95049.t1.exon2;Parent=MS.gene95049.t1 |
| chr8.2 | CDS | 208899 | 208998 | 208899 | ID=cds.MS.gene95049.t1;Parent=MS.gene95049.t1 |
| chr8.2 | exon | 209067 | 209425 | 209067 | ID=MS.gene95049.t1.exon3;Parent=MS.gene95049.t1 |
| chr8.2 | CDS | 209067 | 209425 | 209067 | ID=cds.MS.gene95049.t1;Parent=MS.gene95049.t1 |
| chr8.2 | exon | 209504 | 209596 | 209504 | ID=MS.gene95049.t1.exon4;Parent=MS.gene95049.t1 |
| chr8.2 | CDS | 209504 | 209596 | 209504 | ID=cds.MS.gene95049.t1;Parent=MS.gene95049.t1 |
| chr8.2 | exon | 209707 | 209823 | 209707 | ID=MS.gene95049.t1.exon5;Parent=MS.gene95049.t1 |
| chr8.2 | CDS | 209707 | 209823 | 209707 | ID=cds.MS.gene95049.t1;Parent=MS.gene95049.t1 |
| chr8.2 | exon | 210979 | 211226 | 210979 | ID=MS.gene95049.t1.exon6;Parent=MS.gene95049.t1 |
| chr8.2 | CDS | 210979 | 211226 | 210979 | ID=cds.MS.gene95049.t1;Parent=MS.gene95049.t1 |
| chr8.2 | exon | 211742 | 211913 | 211742 | ID=MS.gene95049.t1.exon7;Parent=MS.gene95049.t1 |
| chr8.2 | CDS | 211742 | 211913 | 211742 | ID=cds.MS.gene95049.t1;Parent=MS.gene95049.t1 |
| chr8.2 | exon | 212638 | 212736 | 212638 | ID=MS.gene95049.t1.exon8;Parent=MS.gene95049.t1 |
| chr8.2 | CDS | 212638 | 212736 | 212638 | ID=cds.MS.gene95049.t1;Parent=MS.gene95049.t1 |
| chr8.2 | exon | 212830 | 213033 | 212830 | ID=MS.gene95049.t1.exon9;Parent=MS.gene95049.t1 |
| chr8.2 | CDS | 212830 | 213033 | 212830 | ID=cds.MS.gene95049.t1;Parent=MS.gene95049.t1 |
| chr8.2 | exon | 213860 | 214022 | 213860 | ID=MS.gene95049.t1.exon10;Parent=MS.gene95049.t1 |
| chr8.2 | CDS | 213860 | 214022 | 213860 | ID=cds.MS.gene95049.t1;Parent=MS.gene95049.t1 |
| chr8.2 | exon | 214635 | 214725 | 214635 | ID=MS.gene95049.t1.exon11;Parent=MS.gene95049.t1 |
| chr8.2 | CDS | 214635 | 214725 | 214635 | ID=cds.MS.gene95049.t1;Parent=MS.gene95049.t1 |
| chr8.2 | exon | 214816 | 214885 | 214816 | ID=MS.gene95049.t1.exon12;Parent=MS.gene95049.t1 |
| chr8.2 | CDS | 214816 | 214885 | 214816 | ID=cds.MS.gene95049.t1;Parent=MS.gene95049.t1 |
| chr8.2 | exon | 215343 | 215471 | 215343 | ID=MS.gene95049.t1.exon13;Parent=MS.gene95049.t1 |
| chr8.2 | CDS | 215343 | 215471 | 215343 | ID=cds.MS.gene95049.t1;Parent=MS.gene95049.t1 |
| chr8.2 | exon | 215652 | 215690 | 215652 | ID=MS.gene95049.t1.exon14;Parent=MS.gene95049.t1 |
| chr8.2 | CDS | 215652 | 215690 | 215652 | ID=cds.MS.gene95049.t1;Parent=MS.gene95049.t1 |
| chr8.2 | exon | 216792 | 216881 | 216792 | ID=MS.gene95049.t1.exon15;Parent=MS.gene95049.t1 |
| chr8.2 | CDS | 216792 | 216881 | 216792 | ID=cds.MS.gene95049.t1;Parent=MS.gene95049.t1 |
| Gene Sequence |
| Protein sequence |
