Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81387.t1 | XP_003617710.2 | 99.7 | 364 | 1 | 0 | 39 | 402 | 140 | 503 | 3.80E-103 | 385.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81387.t1 | Q9FM80 | 74.5 | 400 | 93 | 2 | 11 | 401 | 96 | 495 | 4.2e-63 | 243.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81387.t1 | G7K4F3 | 99.7 | 364 | 1 | 0 | 39 | 402 | 140 | 503 | 2.7e-103 | 385.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene81387.t1 | TR | mTERF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene81387 | 0.825848 | 3.75E-54 | -1.69E-46 |
| MS.gene049151 | MS.gene81387 | 0.815167 | 1.06E-51 | -1.69E-46 |
| MS.gene049153 | MS.gene81387 | 0.83207 | 1.17E-55 | -1.69E-46 |
| MS.gene049170 | MS.gene81387 | 0.801984 | 6.96E-49 | -1.69E-46 |
| MS.gene049230 | MS.gene81387 | 0.805127 | 1.55E-49 | -1.69E-46 |
| MS.gene049297 | MS.gene81387 | 0.852415 | 4.69E-61 | -1.69E-46 |
| MS.gene04933 | MS.gene81387 | 0.81104 | 8.54E-51 | -1.69E-46 |
| MS.gene049378 | MS.gene81387 | 0.848979 | 4.34E-60 | -1.69E-46 |
| MS.gene049758 | MS.gene81387 | 0.828078 | 1.10E-54 | -1.69E-46 |
| MS.gene049910 | MS.gene81387 | 0.834386 | 3.09E-56 | -1.69E-46 |
| MS.gene049915 | MS.gene81387 | 0.806741 | 7.10E-50 | -1.69E-46 |
| MS.gene050226 | MS.gene81387 | 0.862763 | 4.03E-64 | -1.69E-46 |
| MS.gene050227 | MS.gene81387 | 0.875291 | 3.46E-68 | -1.69E-46 |
| MS.gene050228 | MS.gene81387 | 0.87964 | 1.06E-69 | -1.69E-46 |
| MS.gene050330 | MS.gene81387 | -0.848771 | 4.96E-60 | -1.69E-46 |
| MS.gene050426 | MS.gene81387 | -0.843997 | 9.93E-59 | -1.69E-46 |
| MS.gene050558 | MS.gene81387 | 0.812157 | 4.88E-51 | -1.69E-46 |
| MS.gene050623 | MS.gene81387 | -0.87495 | 4.52E-68 | -1.69E-46 |
| MS.gene050642 | MS.gene81387 | 0.908402 | 1.78E-81 | -1.69E-46 |
| MS.gene050820 | MS.gene81387 | 0.814711 | 1.34E-51 | -1.69E-46 |
| MS.gene051240 | MS.gene81387 | 0.801554 | 8.52E-49 | -1.69E-46 |
| MS.gene051257 | MS.gene81387 | 0.842547 | 2.42E-58 | -1.69E-46 |
| MS.gene051662 | MS.gene81387 | 0.804043 | 2.61E-49 | -1.69E-46 |
| MS.gene051663 | MS.gene81387 | 0.812153 | 4.89E-51 | -1.69E-46 |
| MS.gene051860 | MS.gene81387 | 0.831319 | 1.79E-55 | -1.69E-46 |
| MS.gene051983 | MS.gene81387 | 0.907318 | 5.77E-81 | -1.69E-46 |
| MS.gene052011 | MS.gene81387 | -0.834425 | 3.02E-56 | -1.69E-46 |
| MS.gene052077 | MS.gene81387 | 0.878924 | 1.89E-69 | -1.69E-46 |
| MS.gene052176 | MS.gene81387 | 0.871922 | 4.72E-67 | -1.69E-46 |
| MS.gene052188 | MS.gene81387 | 0.807994 | 3.85E-50 | -1.69E-46 |
| MS.gene052309 | MS.gene81387 | -0.853762 | 1.93E-61 | -1.69E-46 |
| MS.gene052340 | MS.gene81387 | 0.821148 | 4.71E-53 | -1.69E-46 |
| MS.gene052376 | MS.gene81387 | 0.804474 | 2.12E-49 | -1.69E-46 |
| MS.gene052389 | MS.gene81387 | 0.843469 | 1.37E-58 | -1.69E-46 |
| MS.gene052600 | MS.gene81387 | 0.862088 | 6.49E-64 | -1.69E-46 |
| MS.gene053836 | MS.gene81387 | 0.859482 | 4.01E-63 | -1.69E-46 |
| MS.gene054183 | MS.gene81387 | 0.805148 | 1.54E-49 | -1.69E-46 |
| MS.gene054349 | MS.gene81387 | 0.815086 | 1.11E-51 | -1.69E-46 |
| MS.gene054719 | MS.gene81387 | 0.819162 | 1.34E-52 | -1.69E-46 |
| MS.gene054930 | MS.gene81387 | 0.862268 | 5.72E-64 | -1.69E-46 |
| MS.gene054942 | MS.gene81387 | 0.859298 | 4.56E-63 | -1.69E-46 |
| MS.gene054983 | MS.gene81387 | 0.833504 | 5.14E-56 | -1.69E-46 |
| MS.gene055422 | MS.gene81387 | 0.805365 | 1.38E-49 | -1.69E-46 |
| MS.gene055428 | MS.gene81387 | 0.822285 | 2.57E-53 | -1.69E-46 |
| MS.gene05553 | MS.gene81387 | 0.857069 | 2.10E-62 | -1.69E-46 |
| MS.gene055701 | MS.gene81387 | 0.847275 | 1.28E-59 | -1.69E-46 |
| MS.gene056087 | MS.gene81387 | 0.851526 | 8.38E-61 | -1.69E-46 |
| MS.gene056506 | MS.gene81387 | 0.800581 | 1.35E-48 | -1.69E-46 |
| MS.gene056979 | MS.gene81387 | 0.902421 | 9.86E-79 | -1.69E-46 |
| MS.gene05702 | MS.gene81387 | 0.81275 | 3.62E-51 | -1.69E-46 |
| MS.gene057121 | MS.gene81387 | 0.824427 | 8.12E-54 | -1.69E-46 |
| MS.gene057439 | MS.gene81387 | 0.806372 | 8.50E-50 | -1.69E-46 |
| MS.gene05761 | MS.gene81387 | 0.830118 | 3.52E-55 | -1.69E-46 |
| MS.gene057639 | MS.gene81387 | 0.800365 | 1.49E-48 | -1.69E-46 |
| MS.gene058002 | MS.gene81387 | 0.827618 | 1.42E-54 | -1.69E-46 |
| MS.gene05811 | MS.gene81387 | 0.830435 | 2.94E-55 | -1.69E-46 |
| MS.gene058139 | MS.gene81387 | 0.809778 | 1.60E-50 | -1.69E-46 |
| MS.gene058142 | MS.gene81387 | 0.871385 | 7.12E-67 | -1.69E-46 |
| MS.gene058276 | MS.gene81387 | 0.841424 | 4.79E-58 | -1.69E-46 |
| MS.gene058710 | MS.gene81387 | 0.844077 | 9.45E-59 | -1.69E-46 |
| MS.gene058749 | MS.gene81387 | 0.833375 | 5.53E-56 | -1.69E-46 |
| MS.gene058833 | MS.gene81387 | 0.804214 | 2.41E-49 | -1.69E-46 |
| MS.gene05907 | MS.gene81387 | 0.823975 | 1.04E-53 | -1.69E-46 |
| MS.gene059247 | MS.gene81387 | 0.848834 | 4.76E-60 | -1.69E-46 |
| MS.gene059285 | MS.gene81387 | 0.836067 | 1.16E-56 | -1.69E-46 |
| MS.gene059511 | MS.gene81387 | 0.800989 | 1.11E-48 | -1.69E-46 |
| MS.gene05984 | MS.gene81387 | 0.850922 | 1.24E-60 | -1.69E-46 |
| MS.gene059894 | MS.gene81387 | 0.818613 | 1.79E-52 | -1.69E-46 |
| MS.gene059899 | MS.gene81387 | 0.802171 | 6.37E-49 | -1.69E-46 |
| MS.gene060297 | MS.gene81387 | 0.819288 | 1.26E-52 | -1.69E-46 |
| MS.gene061040 | MS.gene81387 | -0.820046 | 8.44E-53 | -1.69E-46 |
| MS.gene061049 | MS.gene81387 | 0.830822 | 2.36E-55 | -1.69E-46 |
| MS.gene061114 | MS.gene81387 | -0.835573 | 1.55E-56 | -1.69E-46 |
| MS.gene061159 | MS.gene81387 | 0.800487 | 1.41E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81387.t1 | MTR_5g094610 | 98.990 | 396 | 2 | 1 | 9 | 402 | 108 | 503 | 0.0 | 796 |
| MS.gene81387.t1 | MTR_2g034600 | 32.456 | 228 | 139 | 7 | 129 | 350 | 215 | 433 | 2.06e-26 | 110 |
| MS.gene81387.t1 | MTR_2g034600 | 27.556 | 225 | 134 | 6 | 84 | 302 | 277 | 478 | 1.64e-17 | 84.7 |
| MS.gene81387.t1 | MTR_2g034600 | 30.102 | 196 | 126 | 5 | 157 | 348 | 207 | 395 | 2.12e-17 | 84.3 |
| MS.gene81387.t1 | MTR_2g034600 | 32.314 | 229 | 140 | 7 | 128 | 350 | 275 | 494 | 2.15e-26 | 111 |
| MS.gene81387.t1 | MTR_2g034600 | 27.556 | 225 | 134 | 6 | 84 | 302 | 338 | 539 | 1.53e-17 | 84.7 |
| MS.gene81387.t1 | MTR_2g034600 | 30.102 | 196 | 126 | 5 | 157 | 348 | 268 | 456 | 2.39e-17 | 84.3 |
| MS.gene81387.t1 | MTR_2g034600 | 32.314 | 229 | 140 | 7 | 128 | 350 | 279 | 498 | 2.23e-26 | 111 |
| MS.gene81387.t1 | MTR_2g034600 | 27.556 | 225 | 134 | 6 | 84 | 302 | 342 | 543 | 1.59e-17 | 84.7 |
| MS.gene81387.t1 | MTR_2g034600 | 30.102 | 196 | 126 | 5 | 157 | 348 | 272 | 460 | 2.30e-17 | 84.3 |
| MS.gene81387.t1 | MTR_5g068860 | 25.000 | 328 | 201 | 7 | 91 | 380 | 172 | 492 | 2.25e-26 | 111 |
| MS.gene81387.t1 | MTR_5g068860 | 23.932 | 234 | 169 | 5 | 120 | 350 | 134 | 361 | 3.64e-11 | 65.1 |
| MS.gene81387.t1 | MTR_2g067230 | 27.049 | 244 | 160 | 6 | 126 | 368 | 70 | 296 | 5.19e-26 | 107 |
| MS.gene81387.t1 | MTR_4g084630 | 28.571 | 266 | 176 | 6 | 87 | 347 | 42 | 298 | 7.06e-25 | 104 |
| MS.gene81387.t1 | MTR_4g084630 | 27.948 | 229 | 161 | 2 | 125 | 350 | 41 | 268 | 8.05e-20 | 90.1 |
| MS.gene81387.t1 | MTR_5g041630 | 29.319 | 191 | 132 | 1 | 160 | 350 | 88 | 275 | 1.73e-21 | 94.4 |
| MS.gene81387.t1 | MTR_6g003960 | 24.465 | 327 | 194 | 5 | 92 | 377 | 280 | 594 | 1.78e-20 | 94.0 |
| MS.gene81387.t1 | MTR_4g070060 | 24.080 | 299 | 185 | 6 | 86 | 348 | 274 | 566 | 6.64e-20 | 92.0 |
| MS.gene81387.t1 | MTR_4g070060 | 24.476 | 286 | 198 | 7 | 75 | 349 | 184 | 462 | 4.56e-13 | 71.2 |
| MS.gene81387.t1 | MTR_1g115415 | 23.636 | 275 | 199 | 7 | 75 | 345 | 161 | 428 | 2.04e-18 | 87.4 |
| MS.gene81387.t1 | MTR_1g115415 | 24.254 | 268 | 187 | 8 | 93 | 356 | 81 | 336 | 1.28e-15 | 79.0 |
| MS.gene81387.t1 | MTR_7g081270 | 25.984 | 254 | 173 | 7 | 124 | 374 | 42 | 283 | 7.47e-17 | 80.5 |
| MS.gene81387.t1 | MTR_2g049780 | 23.767 | 223 | 155 | 4 | 126 | 344 | 70 | 281 | 8.20e-17 | 80.9 |
| MS.gene81387.t1 | MTR_2g049780 | 30.570 | 193 | 126 | 6 | 124 | 315 | 100 | 285 | 9.47e-13 | 68.9 |
| MS.gene81387.t1 | MTR_8g105560 | 25.789 | 190 | 137 | 4 | 126 | 313 | 86 | 273 | 2.93e-14 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81387.t1 | AT5G55580 | 68.250 | 400 | 118 | 2 | 11 | 401 | 96 | 495 | 0.0 | 558 |
| MS.gene81387.t1 | AT5G55580 | 73.950 | 357 | 89 | 1 | 45 | 401 | 37 | 389 | 0.0 | 554 |
| MS.gene81387.t1 | AT5G55580 | 64.548 | 299 | 97 | 2 | 11 | 300 | 96 | 394 | 2.98e-134 | 390 |
| MS.gene81387.t1 | AT2G21710 | 26.148 | 283 | 199 | 5 | 94 | 373 | 320 | 595 | 1.58e-26 | 112 |
| MS.gene81387.t1 | AT2G21710 | 23.975 | 317 | 221 | 8 | 75 | 380 | 191 | 498 | 5.91e-13 | 70.9 |
| MS.gene81387.t1 | AT4G02990 | 24.316 | 329 | 202 | 6 | 91 | 380 | 180 | 500 | 7.05e-25 | 107 |
| MS.gene81387.t1 | AT4G02990 | 24.316 | 329 | 202 | 6 | 91 | 380 | 180 | 500 | 7.05e-25 | 107 |
| MS.gene81387.t1 | AT4G38160 | 26.545 | 275 | 188 | 6 | 79 | 347 | 34 | 300 | 1.31e-23 | 100 |
| MS.gene81387.t1 | AT4G38160 | 29.741 | 232 | 155 | 6 | 125 | 350 | 41 | 270 | 1.98e-21 | 94.7 |
| MS.gene81387.t1 | AT4G38160 | 26.545 | 275 | 188 | 6 | 79 | 347 | 34 | 300 | 1.31e-23 | 100 |
| MS.gene81387.t1 | AT4G38160 | 29.741 | 232 | 155 | 6 | 125 | 350 | 41 | 270 | 1.98e-21 | 94.7 |
| MS.gene81387.t1 | AT4G38160 | 26.545 | 275 | 188 | 6 | 79 | 347 | 34 | 300 | 1.39e-23 | 101 |
| MS.gene81387.t1 | AT4G38160 | 29.741 | 232 | 155 | 6 | 125 | 350 | 41 | 270 | 2.25e-21 | 95.1 |
| MS.gene81387.t1 | AT4G38160 | 26.545 | 275 | 188 | 6 | 79 | 347 | 34 | 300 | 2.73e-23 | 100 |
| MS.gene81387.t1 | AT4G38160 | 29.741 | 232 | 155 | 6 | 125 | 350 | 41 | 270 | 3.63e-21 | 94.7 |
| MS.gene81387.t1 | AT1G78930 | 27.650 | 217 | 153 | 3 | 131 | 347 | 342 | 554 | 4.15e-23 | 102 |
| MS.gene81387.t1 | AT1G78930 | 28.485 | 165 | 110 | 3 | 119 | 280 | 397 | 556 | 1.51e-14 | 75.9 |
| MS.gene81387.t1 | AT2G03050 | 26.339 | 224 | 155 | 5 | 126 | 347 | 33 | 248 | 1.71e-21 | 94.0 |
| MS.gene81387.t1 | AT2G03050 | 26.339 | 224 | 155 | 5 | 126 | 347 | 34 | 249 | 1.96e-21 | 94.0 |
| MS.gene81387.t1 | AT4G14605 | 26.484 | 219 | 154 | 5 | 129 | 347 | 236 | 447 | 1.24e-20 | 94.0 |
| MS.gene81387.t1 | AT4G14605 | 26.222 | 225 | 137 | 6 | 84 | 302 | 262 | 463 | 2.09e-14 | 75.1 |
| MS.gene81387.t1 | AT4G14605 | 26.484 | 219 | 154 | 5 | 129 | 347 | 236 | 447 | 1.24e-20 | 94.0 |
| MS.gene81387.t1 | AT4G14605 | 26.222 | 225 | 137 | 6 | 84 | 302 | 262 | 463 | 2.09e-14 | 75.1 |
| MS.gene81387.t1 | AT2G44020 | 26.421 | 299 | 174 | 7 | 91 | 349 | 145 | 437 | 1.35e-20 | 94.0 |
| MS.gene81387.t1 | AT2G44020 | 26.786 | 224 | 148 | 7 | 130 | 350 | 88 | 298 | 3.26e-12 | 68.6 |
| MS.gene81387.t1 | AT2G34620 | 26.606 | 218 | 146 | 4 | 159 | 372 | 85 | 292 | 1.83e-20 | 91.3 |
| MS.gene81387.t1 | AT2G21710 | 24.481 | 241 | 175 | 4 | 94 | 331 | 320 | 556 | 2.19e-20 | 93.6 |
| MS.gene81387.t1 | AT2G21710 | 23.975 | 317 | 221 | 8 | 75 | 380 | 191 | 498 | 5.24e-13 | 70.9 |
| MS.gene81387.t1 | AT2G21710 | 24.268 | 239 | 174 | 4 | 94 | 329 | 320 | 554 | 1.02e-19 | 91.7 |
| MS.gene81387.t1 | AT2G21710 | 23.975 | 317 | 221 | 8 | 75 | 380 | 191 | 498 | 5.98e-13 | 70.9 |
| MS.gene81387.t1 | AT2G36000 | 27.200 | 250 | 158 | 8 | 126 | 369 | 74 | 305 | 1.98e-19 | 88.6 |
| MS.gene81387.t1 | AT2G36000 | 27.200 | 250 | 158 | 8 | 126 | 369 | 74 | 305 | 2.52e-19 | 88.6 |
| MS.gene81387.t1 | AT3G18870 | 25.197 | 254 | 132 | 8 | 129 | 374 | 69 | 272 | 5.46e-17 | 80.9 |
Find 77 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAAGCACCTTTGGAATTA+AGG | 0.140140 | 5.2:+79855568 | MS.gene81387:CDS |
| AGCAATAATTTGCCCTATTT+TGG | 0.169836 | 5.2:-79855807 | None:intergenic |
| GACTCACGTTGCTTTCTTAA+TGG | 0.188627 | 5.2:+79855766 | MS.gene81387:CDS |
| CATCTTCACAATGCTCTCTT+TGG | 0.219102 | 5.2:-79856023 | None:intergenic |
| TGACTTCAATCTCTTGTCTT+TGG | 0.225373 | 5.2:-79854702 | None:intergenic |
| CGTTGCTTTCTTAATGGGCT+TGG | 0.237557 | 5.2:+79855772 | MS.gene81387:CDS |
| GGATGCTATTCTCTGACTTT+TGG | 0.242258 | 5.2:-79855070 | None:intergenic |
| ACATGTGCCTCTCATAAATT+TGG | 0.244120 | 5.2:-79855604 | None:intergenic |
| CTCCTTAGGAAATTTATTCT+TGG | 0.307382 | 5.2:-79856097 | None:intergenic |
| TCCAACGTATTGACATTTCA+TGG | 0.312784 | 5.2:+79855960 | MS.gene81387:CDS |
| CCATGGGAGCAAACGGGTTC+AGG | 0.318170 | 5.2:+79853414 | None:intergenic |
| ATCTTCACAATGCTCTCTTT+GGG | 0.327138 | 5.2:-79856022 | None:intergenic |
| GCTAAGGTACATCGGGTATT+TGG | 0.329609 | 5.2:-79856421 | None:intergenic |
| CCAAGAGGAAATGGTCCTTT+TGG | 0.331786 | 5.2:-79856504 | None:intergenic |
| CTTGATTACTTAAGCACCTT+TGG | 0.335021 | 5.2:+79855560 | MS.gene81387:CDS |
| TCGTCCTCGTCATAAGTTCT+TGG | 0.344950 | 5.2:+79856464 | MS.gene81387:CDS |
| ACTCACGTTGCTTTCTTAAT+GGG | 0.345489 | 5.2:+79855767 | MS.gene81387:CDS |
| GATGTACCTTAGCTTGTCTT+TGG | 0.348758 | 5.2:+79856431 | MS.gene81387:CDS |
| GGCGTACCTAGTACCAAAAT+AGG | 0.359195 | 5.2:+79855794 | MS.gene81387:CDS |
| TAGATTACTTGATGAGTCTT+GGG | 0.360371 | 5.2:+79855666 | MS.gene81387:CDS |
| GTTGCTTTCTTAATGGGCTT+GGG | 0.365837 | 5.2:+79855773 | MS.gene81387:CDS |
| GTTGTCTGAAGAGATTCTTT+TGG | 0.368169 | 5.2:+79855517 | MS.gene81387:CDS |
| TTGAAGTCAAAGACAGTTGC+AGG | 0.386479 | 5.2:+79854716 | MS.gene81387:CDS |
| CCTGAACCCGTTTGCTCCCA+TGG | 0.398680 | 5.2:-79853414 | None:intergenic |
| ACCCACGCCATGGGAGCAAA+CGG | 0.407378 | 5.2:+79853407 | None:intergenic |
| GAATTTGTGGTTGCCTCAAA+AGG | 0.421558 | 5.2:-79855715 | None:intergenic |
| ATAGATTACTTGATGAGTCT+TGG | 0.425881 | 5.2:+79855665 | MS.gene81387:CDS |
| CTGCATTACAGTATTGATGA+TGG | 0.426933 | 5.2:+79856067 | MS.gene81387:CDS |
| ACCGTGTATTCTAGAATTTG+TGG | 0.436537 | 5.2:-79855728 | None:intergenic |
| AGATATTTAATTGAGGAAGT+TGG | 0.438021 | 5.2:+79855884 | MS.gene81387:CDS |
| GCAGGTGCTATCTCTGTCCT+TGG | 0.454121 | 5.2:+79856332 | MS.gene81387:intron |
| CAAAGAGAGCATTGTGAAGA+TGG | 0.456446 | 5.2:+79856024 | MS.gene81387:CDS |
| ACTAGAGATCCAAGAGGAAA+TGG | 0.462060 | 5.2:-79856513 | None:intergenic |
| TAGACAACAAGAAAAGGAAA+AGG | 0.464265 | 5.2:+79855008 | MS.gene81387:CDS |
| CCAAAAGGACCATTTCCTCT+TGG | 0.467379 | 5.2:+79856504 | MS.gene81387:CDS |
| TGACAAAAGGATTCATCAGT+TGG | 0.470816 | 5.2:-79856537 | None:intergenic |
| TTCGATGGAGAAAAGATATC+CGG | 0.473213 | 5.2:+79855493 | MS.gene81387:CDS |
| TATGACGAGGACGAATTCTC+TGG | 0.474277 | 5.2:-79856455 | None:intergenic |
| TCCAGCCCATCGTTGACAAA+AGG | 0.483266 | 5.2:-79856550 | None:intergenic |
| AATTGAGGAAGTTGGCATCA+AGG | 0.486070 | 5.2:+79855892 | MS.gene81387:CDS |
| TCAATTAAATATCTTACTGT+TGG | 0.487640 | 5.2:-79855875 | None:intergenic |
| GATGTTTCTTAACAAAGAGT+TGG | 0.488384 | 5.2:+79855994 | MS.gene81387:CDS |
| TACAGATAGACAACAAGAAA+AGG | 0.490910 | 5.2:+79855002 | MS.gene81387:intron |
| TTCCAAGAATAAATTTCCTA+AGG | 0.495242 | 5.2:+79856095 | MS.gene81387:CDS |
| AAAGCCGAAGTATTTGTACT+TGG | 0.508230 | 5.2:+79856365 | MS.gene81387:CDS |
| GCGTACCTAGTACCAAAATA+GGG | 0.510052 | 5.2:+79855795 | MS.gene81387:CDS |
| AACAGTAAGATATTTAATTG+AGG | 0.516231 | 5.2:+79855877 | MS.gene81387:CDS |
| CCCACGCCATGGGAGCAAAC+GGG | 0.518003 | 5.2:+79853408 | None:intergenic |
| TTGTGATTCCTTAATTCCAA+AGG | 0.518718 | 5.2:-79855576 | None:intergenic |
| TCTTTGGCATTAAGATCAGT+AGG | 0.525087 | 5.2:-79854686 | None:intergenic |
| AATAAATGTATGTTCTGCAC+AGG | 0.526298 | 5.2:+79855637 | MS.gene81387:CDS |
| CGGCTTTAGATTAGCTTCCA+AGG | 0.526666 | 5.2:-79856349 | None:intergenic |
| ATAAATTTCCTAAGGAGCAT+AGG | 0.526985 | 5.2:+79856103 | MS.gene81387:CDS |
| TTTACCAAGTACAAATACTT+CGG | 0.532246 | 5.2:-79856369 | None:intergenic |
| AAGACAAGCTAAGGTACATC+GGG | 0.535136 | 5.2:-79856428 | None:intergenic |
| GTAGTTTCGTAGAAATTCGA+TGG | 0.537172 | 5.2:+79855478 | MS.gene81387:intron |
| GTACATCGGGTATTTGGTCA+AGG | 0.541793 | 5.2:-79856415 | None:intergenic |
| TCCCTAAAGAAAGCTCCAAA+AGG | 0.551170 | 5.2:+79856489 | MS.gene81387:CDS |
| TCTGGTCCAAAGACAAGCTA+AGG | 0.551617 | 5.2:-79856437 | None:intergenic |
| AGACAACAAGAAAAGGAAAA+GGG | 0.551962 | 5.2:+79855009 | MS.gene81387:CDS |
| ATACGTTGGACAAGAATTTG+AGG | 0.570242 | 5.2:-79855947 | None:intergenic |
| ATGTATGTTCTGCACAGGAA+AGG | 0.582720 | 5.2:+79855642 | MS.gene81387:CDS |
| AGATTACTTGATGAGTCTTG+GGG | 0.589186 | 5.2:+79855667 | MS.gene81387:CDS |
| AAAGACAAGCTAAGGTACAT+CGG | 0.593674 | 5.2:-79856429 | None:intergenic |
| AGAATCTCTTCAGACAACTC+CGG | 0.598051 | 5.2:-79855512 | None:intergenic |
| GTGCTTAAGTAATCAAGAAG+TGG | 0.598694 | 5.2:-79855554 | None:intergenic |
| ATACTGTAATGCAGAAGCTG+AGG | 0.609678 | 5.2:-79856058 | None:intergenic |
| ACAAGAAAATAACAGTGCAA+AGG | 0.615006 | 5.2:+79855095 | MS.gene81387:CDS |
| TACTGTAATGCAGAAGCTGA+GGG | 0.620289 | 5.2:-79856057 | None:intergenic |
| TCCATGAAATGTCAATACGT+TGG | 0.626915 | 5.2:-79855961 | None:intergenic |
| GGTAAATGAGCTTCACAATG+AGG | 0.633064 | 5.2:+79856386 | MS.gene81387:CDS |
| GGTGTGAGATCTCTTAACAA+TGG | 0.634820 | 5.2:+79855030 | MS.gene81387:CDS |
| AATTCATCCAAATTTATGAG+AGG | 0.636805 | 5.2:+79855597 | MS.gene81387:CDS |
| ACCACAAATTCTAGAATACA+CGG | 0.657650 | 5.2:+79855727 | MS.gene81387:CDS |
| GTTGGAACTAGAGATCCAAG+AGG | 0.745944 | 5.2:-79856519 | None:intergenic |
| GAAACCAAGAACTTATGACG+AGG | 0.752928 | 5.2:-79856468 | None:intergenic |
| ACAAATTCTAGAATACACGG+TGG | 0.791192 | 5.2:+79855730 | MS.gene81387:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCTACTAAAATTAAAAAT+TGG | - | chr5.2:79854404-79854423 | None:intergenic | 10.0% |
| !! | AAAATACTAAAATTTCATCA+TGG | - | chr5.2:79854356-79854375 | None:intergenic | 15.0% |
| !! | ATATATTTGAATTGAAGTAA+TGG | + | chr5.2:79854484-79854503 | MS.gene81387:intron | 15.0% |
| !! | CATTGTAATTATATGTATTT+AGG | + | chr5.2:79855371-79855390 | MS.gene81387:intron | 15.0% |
| !! | TAGTAGTATATTATGTTATT+AGG | + | chr5.2:79855187-79855206 | MS.gene81387:intron | 15.0% |
| !! | TATATTTGAATTGAAGTAAT+GGG | + | chr5.2:79854485-79854504 | MS.gene81387:intron | 15.0% |
| !! | AAAAGAAATGCAAAAGAAAA+AGG | - | chr5.2:79853513-79853532 | None:intergenic | 20.0% |
| !! | AACAGTAAGATATTTAATTG+AGG | + | chr5.2:79855877-79855896 | MS.gene81387:CDS | 20.0% |
| !! | AATATAAGTAATGAGATTGA+TGG | - | chr5.2:79853875-79853894 | None:intergenic | 20.0% |
| !! | ATATTCATCATATTCATTCA+TGG | + | chr5.2:79854027-79854046 | MS.gene81387:intron | 20.0% |
| !! | CATAATATACTACTAATAAG+AGG | - | chr5.2:79855182-79855201 | None:intergenic | 20.0% |
| !! | TCAATTAAATATCTTACTGT+TGG | - | chr5.2:79855878-79855897 | None:intergenic | 20.0% |
| !!! | AACAAATGTATTTTTAAAGG+GGG | - | chr5.2:79853704-79853723 | None:intergenic | 20.0% |
| !!! | ATGGATTAAGATAATTTTCA+GGG | + | chr5.2:79853995-79854014 | MS.gene81387:intron | 20.0% |
| !!! | CAACAAATGTATTTTTAAAG+GGG | - | chr5.2:79853705-79853724 | None:intergenic | 20.0% |
| !!! | CTTGGTAGTTTTAATTTTAA+GGG | + | chr5.2:79854760-79854779 | MS.gene81387:intron | 20.0% |
| !!! | GCAACAAATGTATTTTTAAA+GGG | - | chr5.2:79853706-79853725 | None:intergenic | 20.0% |
| !!! | TTGGTAGTTTTAATTTTAAG+GGG | + | chr5.2:79854761-79854780 | MS.gene81387:intron | 20.0% |
| !!! | TTTAGTAGAAAATTTGAAGT+GGG | + | chr5.2:79854413-79854432 | MS.gene81387:intron | 20.0% |
| !!! | TTTTAGTAGAAAATTTGAAG+TGG | + | chr5.2:79854412-79854431 | MS.gene81387:intron | 20.0% |
| ! | AAAGCAATTATAAGATTCCA+TGG | - | chr5.2:79855444-79855463 | None:intergenic | 25.0% |
| ! | AAGTTTACGTTACCAAAAAT+CGG | + | chr5.2:79853741-79853760 | MS.gene81387:intron | 25.0% |
| ! | AATTCATCCAAATTTATGAG+AGG | + | chr5.2:79855597-79855616 | MS.gene81387:CDS | 25.0% |
| ! | AGATATTTAATTGAGGAAGT+TGG | + | chr5.2:79855884-79855903 | MS.gene81387:CDS | 25.0% |
| ! | ATTAGGTCAAATTAGTCAAA+CGG | - | chr5.2:79853940-79853959 | None:intergenic | 25.0% |
| ! | CCTAAAAGAAAAACAACTAT+TGG | + | chr5.2:79853901-79853920 | MS.gene81387:intron | 25.0% |
| ! | CTTTATATTGTAGGTGTATT+TGG | + | chr5.2:79854810-79854829 | MS.gene81387:intron | 25.0% |
| ! | GAACAATTACATTAAATTGC+AGG | - | chr5.2:79853478-79853497 | None:intergenic | 25.0% |
| ! | GTTTGAATTGGAGAAATAAA+TGG | + | chr5.2:79854566-79854585 | MS.gene81387:intron | 25.0% |
| ! | TTCCAAGAATAAATTTCCTA+AGG | + | chr5.2:79856095-79856114 | MS.gene81387:CDS | 25.0% |
| ! | TTTACCAAGTACAAATACTT+CGG | - | chr5.2:79856372-79856391 | None:intergenic | 25.0% |
| !! | ATAAAGTGTCTATGCTATAT+AGG | - | chr5.2:79854796-79854815 | None:intergenic | 25.0% |
| !! | ATATAAGAAGAATCCTTTTG+AGG | + | chr5.2:79855702-79855721 | MS.gene81387:CDS | 25.0% |
| !! | ATGTTTGAAAAAGTTTTGCT+TGG | + | chr5.2:79854742-79854761 | MS.gene81387:intron | 25.0% |
| !!! | CATGGATTAAGATAATTTTC+AGG | + | chr5.2:79853994-79854013 | MS.gene81387:intron | 25.0% |
| !!! | CCAATAGTTGTTTTTCTTTT+AGG | - | chr5.2:79853904-79853923 | None:intergenic | 25.0% |
| !!! | GCTTGGTAGTTTTAATTTTA+AGG | + | chr5.2:79854759-79854778 | MS.gene81387:intron | 25.0% |
| !!! | GGCAACAAATGTATTTTTAA+AGG | - | chr5.2:79853707-79853726 | None:intergenic | 25.0% |
| !!! | TTTTGAAGTTGTGTTTGAAT+TGG | + | chr5.2:79854554-79854573 | MS.gene81387:intron | 25.0% |
| AAACTCTCGAAATTCTTGAA+AGG | + | chr5.2:79855316-79855335 | MS.gene81387:intron | 30.0% | |
| AACTCTCGAAATTCTTGAAA+GGG | + | chr5.2:79855317-79855336 | MS.gene81387:intron | 30.0% | |
| AAGGAAACGATGTTATGTAA+TGG | + | chr5.2:79856231-79856250 | MS.gene81387:intron | 30.0% | |
| AATAAATGTATGTTCTGCAC+AGG | + | chr5.2:79855637-79855656 | MS.gene81387:CDS | 30.0% | |
| ACAAGAAAATAACAGTGCAA+AGG | + | chr5.2:79855095-79855114 | MS.gene81387:CDS | 30.0% | |
| ACTAATAAGAGGTCTAACAA+TGG | - | chr5.2:79855171-79855190 | None:intergenic | 30.0% | |
| AGAATGTTGAAAGGATTGTA+AGG | - | chr5.2:79854079-79854098 | None:intergenic | 30.0% | |
| AGACAACAAGAAAAGGAAAA+GGG | + | chr5.2:79855009-79855028 | MS.gene81387:CDS | 30.0% | |
| ATAGATTACTTGATGAGTCT+TGG | + | chr5.2:79855665-79855684 | MS.gene81387:CDS | 30.0% | |
| ATGCAAAAATAACCTGTGTA+AGG | - | chr5.2:79856165-79856184 | None:intergenic | 30.0% | |
| ATTAAATTGCAGGAATGTAG+AGG | - | chr5.2:79853468-79853487 | None:intergenic | 30.0% | |
| ATTGAACTTGTGTTGTATCT+AGG | + | chr5.2:79854649-79854668 | MS.gene81387:intron | 30.0% | |
| CGTTATAAGGATCAAACAAA+AGG | - | chr5.2:79856274-79856293 | None:intergenic | 30.0% | |
| CTCAACACTGTAAGAAAAAA+GGG | - | chr5.2:79855843-79855862 | None:intergenic | 30.0% | |
| CTCCTTAGGAAATTTATTCT+TGG | - | chr5.2:79856100-79856119 | None:intergenic | 30.0% | |
| GAATGTTGAAAGGATTGTAA+GGG | - | chr5.2:79854078-79854097 | None:intergenic | 30.0% | |
| GATGTTTCTTAACAAAGAGT+TGG | + | chr5.2:79855994-79856013 | MS.gene81387:CDS | 30.0% | |
| GCATAGACACTTTATATTGT+AGG | + | chr5.2:79854801-79854820 | MS.gene81387:intron | 30.0% | |
| GTCTAGTTAACAAACAAATG+AGG | + | chr5.2:79853836-79853855 | MS.gene81387:intron | 30.0% | |
| GTGATAAATGGATAGCATTT+GGG | - | chr5.2:79853797-79853816 | None:intergenic | 30.0% | |
| TACAGATAGACAACAAGAAA+AGG | + | chr5.2:79855002-79855021 | MS.gene81387:intron | 30.0% | |
| TAGACAACAAGAAAAGGAAA+AGG | + | chr5.2:79855008-79855027 | MS.gene81387:CDS | 30.0% | |
| TAGATTACTTGATGAGTCTT+GGG | + | chr5.2:79855666-79855685 | MS.gene81387:CDS | 30.0% | |
| TCTCAACACTGTAAGAAAAA+AGG | - | chr5.2:79855844-79855863 | None:intergenic | 30.0% | |
| TTAAATTGCAGGAATGTAGA+GGG | - | chr5.2:79853467-79853486 | None:intergenic | 30.0% | |
| TTGTGATTCCTTAATTCCAA+AGG | - | chr5.2:79855579-79855598 | None:intergenic | 30.0% | |
| TTTCAAGAATTTCGAGAGTT+TGG | - | chr5.2:79855317-79855336 | None:intergenic | 30.0% | |
| ! | AGATTCTTTTGGATGAGAAA+TGG | + | chr5.2:79855528-79855547 | MS.gene81387:CDS | 30.0% |
| ! | ATAAATTTCCTAAGGAGCAT+AGG | + | chr5.2:79856103-79856122 | MS.gene81387:CDS | 30.0% |
| ! | TGATGATGAAGATGAAGAAA+TGG | + | chr5.2:79854255-79854274 | MS.gene81387:intron | 30.0% |
| ! | TTTGGGACTGAATATTGATT+GGG | + | chr5.2:79855286-79855305 | MS.gene81387:intron | 30.0% |
| !! | AACAGTGCAAAGGTATTAAA+TGG | + | chr5.2:79855105-79855124 | MS.gene81387:intron | 30.0% |
| !! | ACCACAAATTCTAGAATACA+CGG | + | chr5.2:79855727-79855746 | MS.gene81387:CDS | 30.0% |
| !! | AGCAATAATTTGCCCTATTT+TGG | - | chr5.2:79855810-79855829 | None:intergenic | 30.0% |
| !!! | ATTGTGTTTACACCGATTTT+TGG | - | chr5.2:79853756-79853775 | None:intergenic | 30.0% |
| !!! | CGATTGGTTTTGAGAATTTT+GGG | - | chr5.2:79854196-79854215 | None:intergenic | 30.0% |
| !!! | TCGATTGGTTTTGAGAATTT+TGG | - | chr5.2:79854197-79854216 | None:intergenic | 30.0% |
| !!! | TGCACTGTTATTTTCTTGTA+AGG | - | chr5.2:79855094-79855113 | None:intergenic | 30.0% |
| !!! | TTTTGGGACTGAATATTGAT+TGG | + | chr5.2:79855285-79855304 | MS.gene81387:intron | 30.0% |
| AAAGACAAGCTAAGGTACAT+CGG | - | chr5.2:79856432-79856451 | None:intergenic | 35.0% | |
| AACTTGTGTTGTATCTAGGA+CGG | + | chr5.2:79854653-79854672 | MS.gene81387:intron | 35.0% | |
| ACACTGTAAGAAAAAAGGGA+CGG | - | chr5.2:79855839-79855858 | None:intergenic | 35.0% | |
| ACATGTGCCTCTCATAAATT+TGG | - | chr5.2:79855607-79855626 | None:intergenic | 35.0% | |
| AGACCTTAAAGTTTGTGAAG+TGG | - | chr5.2:79853820-79853839 | None:intergenic | 35.0% | |
| AGATTACTTGATGAGTCTTG+GGG | + | chr5.2:79855667-79855686 | MS.gene81387:CDS | 35.0% | |
| ATACGTTGGACAAGAATTTG+AGG | - | chr5.2:79855950-79855969 | None:intergenic | 35.0% | |
| ATCTTCACAATGCTCTCTTT+GGG | - | chr5.2:79856025-79856044 | None:intergenic | 35.0% | |
| CTTGATTACTTAAGCACCTT+TGG | + | chr5.2:79855560-79855579 | MS.gene81387:CDS | 35.0% | |
| GACCTTAAAGTTTGTGAAGT+GGG | - | chr5.2:79853819-79853838 | None:intergenic | 35.0% | |
| GAGCATAGGAATGAAAAATG+CGG | + | chr5.2:79856117-79856136 | MS.gene81387:CDS | 35.0% | |
| GGAATTGGAAGAATGTTGAA+AGG | - | chr5.2:79854088-79854107 | None:intergenic | 35.0% | |
| GGCATCAAGGAAAAAGATTT+GGG | + | chr5.2:79855905-79855924 | MS.gene81387:CDS | 35.0% | |
| GGTGATAAATGGATAGCATT+TGG | - | chr5.2:79853798-79853817 | None:intergenic | 35.0% | |
| GTAGTTTCGTAGAAATTCGA+TGG | + | chr5.2:79855478-79855497 | MS.gene81387:intron | 35.0% | |
| GTGCTTAAGTAATCAAGAAG+TGG | - | chr5.2:79855557-79855576 | None:intergenic | 35.0% | |
| TAAACTTCATTTGCCATCGA+TGG | - | chr5.2:79853728-79853747 | None:intergenic | 35.0% | |
| TAACTGAGTGTCACGTTATA+AGG | - | chr5.2:79856287-79856306 | None:intergenic | 35.0% | |
| TATTGAATGCCCAAAAGTCA+GGG | + | chr5.2:79855254-79855273 | MS.gene81387:intron | 35.0% | |
| TCCATGAAATGTCAATACGT+TGG | - | chr5.2:79855964-79855983 | None:intergenic | 35.0% | |
| TCTTCATCATCAGAGTCATA+CGG | - | chr5.2:79854247-79854266 | None:intergenic | 35.0% | |
| TCTTTGGCATTAAGATCAGT+AGG | - | chr5.2:79854689-79854708 | None:intergenic | 35.0% | |
| TGACAAAAGGATTCATCAGT+TGG | - | chr5.2:79856540-79856559 | None:intergenic | 35.0% | |
| TGACTTCAATCTCTTGTCTT+TGG | - | chr5.2:79854705-79854724 | None:intergenic | 35.0% | |
| TGGCATCAAGGAAAAAGATT+TGG | + | chr5.2:79855904-79855923 | MS.gene81387:CDS | 35.0% | |
| TTATTCTCCCTTTGCACAAA+AGG | + | chr5.2:79856199-79856218 | MS.gene81387:intron | 35.0% | |
| TTATTGAATGCCCAAAAGTC+AGG | + | chr5.2:79855253-79855272 | MS.gene81387:intron | 35.0% | |
| TTCGATGGAGAAAAGATATC+CGG | + | chr5.2:79855493-79855512 | MS.gene81387:CDS | 35.0% | |
| TTTGTGAAGTGGGTGATAAA+TGG | - | chr5.2:79853809-79853828 | None:intergenic | 35.0% | |
| ! | AAAGCCGAAGTATTTGTACT+TGG | + | chr5.2:79856365-79856384 | MS.gene81387:CDS | 35.0% |
| ! | AATAAAATGCCCCTGACTTT+TGG | - | chr5.2:79855267-79855286 | None:intergenic | 35.0% |
| ! | AATACATTTGTTGCCATCGA+TGG | + | chr5.2:79853712-79853731 | MS.gene81387:intron | 35.0% |
| ! | ACTCACGTTGCTTTCTTAAT+GGG | + | chr5.2:79855767-79855786 | MS.gene81387:CDS | 35.0% |
| ! | ATAAAATGCCCCTGACTTTT+GGG | - | chr5.2:79855266-79855285 | None:intergenic | 35.0% |
| ! | ATGAATCCTTTTGTCAACGA+TGG | + | chr5.2:79856544-79856563 | MS.gene81387:CDS | 35.0% |
| ! | GATGCTATTCTCTGACTTTT+GGG | - | chr5.2:79855072-79855091 | None:intergenic | 35.0% |
| ! | GTTGTCTGAAGAGATTCTTT+TGG | + | chr5.2:79855517-79855536 | MS.gene81387:CDS | 35.0% |
| ! | TCCAACGTATTGACATTTCA+TGG | + | chr5.2:79855960-79855979 | MS.gene81387:CDS | 35.0% |
| ! | TGAATCCTTTTGTCAACGAT+GGG | + | chr5.2:79856545-79856564 | MS.gene81387:CDS | 35.0% |
| ! | TTTTCATTCCTATGCTCCTT+AGG | - | chr5.2:79856114-79856133 | None:intergenic | 35.0% |
| !! | ACAAATTCTAGAATACACGG+TGG | + | chr5.2:79855730-79855749 | MS.gene81387:CDS | 35.0% |
| !! | ACCGTGTATTCTAGAATTTG+TGG | - | chr5.2:79855731-79855750 | None:intergenic | 35.0% |
| !! | CTGCATTACAGTATTGATGA+TGG | + | chr5.2:79856067-79856086 | MS.gene81387:CDS | 35.0% |
| !! | CTTAAGCACCTTTGGAATTA+AGG | + | chr5.2:79855568-79855587 | MS.gene81387:CDS | 35.0% |
| !! | CTTGAAGTGGGTTTTTGATT+AGG | - | chr5.2:79853957-79853976 | None:intergenic | 35.0% |
| !!! | AAGTCAGGGGCATTTTATTT+TGG | + | chr5.2:79855268-79855287 | MS.gene81387:intron | 35.0% |
| !!! | AATTTTGACTAGCCTTACAC+AGG | + | chr5.2:79856150-79856169 | MS.gene81387:CDS | 35.0% |
| !!! | AGTCAGGGGCATTTTATTTT+GGG | + | chr5.2:79855269-79855288 | MS.gene81387:intron | 35.0% |
| !!! | ATTTGCCCTATTTTGGTACT+AGG | - | chr5.2:79855803-79855822 | None:intergenic | 35.0% |
| !!! | GGTTTTGAGAATTTTGGGAT+TGG | - | chr5.2:79854191-79854210 | None:intergenic | 35.0% |
| !!! | TCCTTTTGGAGCTTTCTTTA+GGG | - | chr5.2:79856493-79856512 | None:intergenic | 35.0% |
| AAAACCCACTTCAAGCAGTT+TGG | + | chr5.2:79853962-79853981 | MS.gene81387:intron | 40.0% | |
| AAGACAAGCTAAGGTACATC+GGG | - | chr5.2:79856431-79856450 | None:intergenic | 40.0% | |
| AATCTCCAAACTGCTTGAAG+TGG | - | chr5.2:79853970-79853989 | None:intergenic | 40.0% | |
| AATTGAGGAAGTTGGCATCA+AGG | + | chr5.2:79855892-79855911 | MS.gene81387:CDS | 40.0% | |
| ACCAATCGAAAATCACCCTA+TGG | + | chr5.2:79854208-79854227 | MS.gene81387:intron | 40.0% | |
| ACTAGAGATCCAAGAGGAAA+TGG | - | chr5.2:79856516-79856535 | None:intergenic | 40.0% | |
| AGAATCTCTTCAGACAACTC+CGG | - | chr5.2:79855515-79855534 | None:intergenic | 40.0% | |
| ATACTGTAATGCAGAAGCTG+AGG | - | chr5.2:79856061-79856080 | None:intergenic | 40.0% | |
| ATCTCCAAACTGCTTGAAGT+GGG | - | chr5.2:79853969-79853988 | None:intergenic | 40.0% | |
| ATGTATGTTCTGCACAGGAA+AGG | + | chr5.2:79855642-79855661 | MS.gene81387:CDS | 40.0% | |
| ATTGAATGCCCAAAAGTCAG+GGG | + | chr5.2:79855255-79855274 | MS.gene81387:intron | 40.0% | |
| CACCCACTTCACAAACTTTA+AGG | + | chr5.2:79853814-79853833 | MS.gene81387:intron | 40.0% | |
| CATCTTCACAATGCTCTCTT+TGG | - | chr5.2:79856026-79856045 | None:intergenic | 40.0% | |
| GAAACCAAGAACTTATGACG+AGG | - | chr5.2:79856471-79856490 | None:intergenic | 40.0% | |
| GAATTTGTGGTTGCCTCAAA+AGG | - | chr5.2:79855718-79855737 | None:intergenic | 40.0% | |
| GCACAAAAGGAACAAGGAAA+AGG | + | chr5.2:79856212-79856231 | MS.gene81387:intron | 40.0% | |
| GCAGTTTGGAGATTCTATCA+TGG | + | chr5.2:79853976-79853995 | MS.gene81387:intron | 40.0% | |
| GCATGATTAGAGGAAGGAAT+TGG | - | chr5.2:79854103-79854122 | None:intergenic | 40.0% | |
| GCGTACCTAGTACCAAAATA+GGG | + | chr5.2:79855795-79855814 | MS.gene81387:CDS | 40.0% | |
| GCTGCAGTTATTGTGTGATT+AGG | + | chr5.2:79855209-79855228 | MS.gene81387:intron | 40.0% | |
| GGTAAATGAGCTTCACAATG+AGG | + | chr5.2:79856386-79856405 | MS.gene81387:CDS | 40.0% | |
| GGTGTGAGATCTCTTAACAA+TGG | + | chr5.2:79855030-79855049 | MS.gene81387:CDS | 40.0% | |
| GTTGATTGTCTTAAACTGCG+AGG | + | chr5.2:79853668-79853687 | MS.gene81387:intron | 40.0% | |
| TACTGTAATGCAGAAGCTGA+GGG | - | chr5.2:79856060-79856079 | None:intergenic | 40.0% | |
| TCCCTAAAGAAAGCTCCAAA+AGG | + | chr5.2:79856489-79856508 | MS.gene81387:CDS | 40.0% | |
| TGTCAGACACTAACACGTTA+TGG | - | chr5.2:79854839-79854858 | None:intergenic | 40.0% | |
| TTATTGTGTGATTAGGCAGC+AGG | + | chr5.2:79855216-79855235 | MS.gene81387:intron | 40.0% | |
| TTGAAGTCAAAGACAGTTGC+AGG | + | chr5.2:79854716-79854735 | MS.gene81387:CDS | 40.0% | |
| TTGAATGTAACCACACGAGT+CGG | - | chr5.2:79854867-79854886 | None:intergenic | 40.0% | |
| ! | AGAAGCAGAAGCATGATTAG+AGG | - | chr5.2:79854113-79854132 | None:intergenic | 40.0% |
| ! | CCTTGTTCCTTTTGTGCAAA+GGG | - | chr5.2:79856209-79856228 | None:intergenic | 40.0% |
| ! | GACTCACGTTGCTTTCTTAA+TGG | + | chr5.2:79855766-79855785 | MS.gene81387:CDS | 40.0% |
| ! | GGAGAGAGGAATTTTCCATA+GGG | - | chr5.2:79854226-79854245 | None:intergenic | 40.0% |
| ! | GGATGCTATTCTCTGACTTT+TGG | - | chr5.2:79855073-79855092 | None:intergenic | 40.0% |
| ! | TCCATAGGGTGATTTTCGAT+TGG | - | chr5.2:79854212-79854231 | None:intergenic | 40.0% |
| ! | TCCTTGTTCCTTTTGTGCAA+AGG | - | chr5.2:79856210-79856229 | None:intergenic | 40.0% |
| !! | CAAAGAGAGCATTGTGAAGA+TGG | + | chr5.2:79856024-79856043 | MS.gene81387:CDS | 40.0% |
| !! | GATGTACCTTAGCTTGTCTT+TGG | + | chr5.2:79856431-79856450 | MS.gene81387:CDS | 40.0% |
| !! | GTTGCTTTCTTAATGGGCTT+GGG | + | chr5.2:79855773-79855792 | MS.gene81387:CDS | 40.0% |
| !!! | ACCCACAACTCGAGTTTTTT+GGG | + | chr5.2:79855344-79855363 | MS.gene81387:intron | 40.0% |
| !!! | GTCCTTTTGGAGCTTTCTTT+AGG | - | chr5.2:79856494-79856513 | None:intergenic | 40.0% |
| AATTGCAGGAATGTAGAGGG+TGG | - | chr5.2:79853464-79853483 | None:intergenic | 45.0% | |
| ATAAGATTCCATGGCACCAC+AGG | - | chr5.2:79855435-79855454 | None:intergenic | 45.0% | |
| ATAGCATTTGGGTGACACTG+TGG | - | chr5.2:79853786-79853805 | None:intergenic | 45.0% | |
| CCAAAAGGACCATTTCCTCT+TGG | + | chr5.2:79856504-79856523 | MS.gene81387:CDS | 45.0% | |
| CCCTTTGCACAAAAGGAACA+AGG | + | chr5.2:79856206-79856225 | MS.gene81387:intron | 45.0% | |
| GCAGCCAATTAATGTACCTG+TGG | + | chr5.2:79855416-79855435 | MS.gene81387:intron | 45.0% | |
| GCTAAGGTACATCGGGTATT+TGG | - | chr5.2:79856424-79856443 | None:intergenic | 45.0% | |
| GGCACCACAGGTACATTAAT+TGG | - | chr5.2:79855423-79855442 | None:intergenic | 45.0% | |
| GGCGTACCTAGTACCAAAAT+AGG | + | chr5.2:79855794-79855813 | MS.gene81387:CDS | 45.0% | |
| GTACATCGGGTATTTGGTCA+AGG | - | chr5.2:79856418-79856437 | None:intergenic | 45.0% | |
| GTTGGAACTAGAGATCCAAG+AGG | - | chr5.2:79856522-79856541 | None:intergenic | 45.0% | |
| TATGACGAGGACGAATTCTC+TGG | - | chr5.2:79856458-79856477 | None:intergenic | 45.0% | |
| TCGTCCTCGTCATAAGTTCT+TGG | + | chr5.2:79856464-79856483 | MS.gene81387:CDS | 45.0% | |
| TCTGGTCCAAAGACAAGCTA+AGG | - | chr5.2:79856440-79856459 | None:intergenic | 45.0% | |
| ! | CCAAGAGGAAATGGTCCTTT+TGG | - | chr5.2:79856507-79856526 | None:intergenic | 45.0% |
| ! | CCCCAAAAAACTCGAGTTGT+GGG | - | chr5.2:79855348-79855367 | None:intergenic | 45.0% |
| ! | CGGAGAGAGGAATTTTCCAT+AGG | - | chr5.2:79854227-79854246 | None:intergenic | 45.0% |
| ! | GCAGAAGCATGATTAGAGGA+AGG | - | chr5.2:79854109-79854128 | None:intergenic | 45.0% |
| ! | TCCCCAAAAAACTCGAGTTG+TGG | - | chr5.2:79855349-79855368 | None:intergenic | 45.0% |
| ! | TTAATGTACCTGTGGTGCCA+TGG | + | chr5.2:79855424-79855443 | MS.gene81387:intron | 45.0% |
| !! | CGGCTTTAGATTAGCTTCCA+AGG | - | chr5.2:79856352-79856371 | None:intergenic | 45.0% |
| !! | CGTTGCTTTCTTAATGGGCT+TGG | + | chr5.2:79855772-79855791 | MS.gene81387:CDS | 45.0% |
| !! | TTAGTCAAACGGTGTCGTTG+AGG | - | chr5.2:79853929-79853948 | None:intergenic | 45.0% |
| !!! | CCCACAACTCGAGTTTTTTG+GGG | + | chr5.2:79855345-79855364 | MS.gene81387:intron | 45.0% |
| !!! | GACCCACAACTCGAGTTTTT+TGG | + | chr5.2:79855343-79855362 | MS.gene81387:intron | 45.0% |
| CATCAGAGTCATACGGAGAG+AGG | - | chr5.2:79854240-79854259 | None:intergenic | 50.0% | |
| CTGCAGGCACAGTAGTCAAT+AGG | - | chr5.2:79856316-79856335 | None:intergenic | 50.0% | |
| TCCAGCCCATCGTTGACAAA+AGG | - | chr5.2:79856553-79856572 | None:intergenic | 50.0% | |
| ! | CAAACGGGTTCAGGAGTGTA+TGG | + | chr5.2:79853423-79853442 | MS.gene81387:intron | 50.0% |
| ! | CTATTGACTACTGTGCCTGC+AGG | + | chr5.2:79856314-79856333 | MS.gene81387:intron | 50.0% |
| ! | TCCTTTTGTCAACGATGGGC+TGG | + | chr5.2:79856549-79856568 | MS.gene81387:CDS | 50.0% |
| AGGACAGAGATAGCACCTGC+AGG | - | chr5.2:79856332-79856351 | None:intergenic | 55.0% | |
| GCAGGAATGTAGAGGGTGGT+TGG | - | chr5.2:79853460-79853479 | None:intergenic | 55.0% | |
| ! | GCAGGTGCTATCTCTGTCCT+TGG | + | chr5.2:79856332-79856351 | MS.gene81387:intron | 55.0% |
| !! | TGACACAACACCGACTCGTG+TGG | + | chr5.2:79854854-79854873 | MS.gene81387:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 79853416 | 79856653 | 79853416 | ID=MS.gene81387 |
| chr5.2 | mRNA | 79853416 | 79856653 | 79853416 | ID=MS.gene81387.t1;Parent=MS.gene81387 |
| chr5.2 | exon | 79853416 | 79853439 | 79853416 | ID=MS.gene81387.t1.exon1;Parent=MS.gene81387.t1 |
| chr5.2 | CDS | 79853416 | 79853439 | 79853416 | ID=cds.MS.gene81387.t1;Parent=MS.gene81387.t1 |
| chr5.2 | exon | 79854671 | 79854737 | 79854671 | ID=MS.gene81387.t1.exon2;Parent=MS.gene81387.t1 |
| chr5.2 | CDS | 79854671 | 79854737 | 79854671 | ID=cds.MS.gene81387.t1;Parent=MS.gene81387.t1 |
| chr5.2 | exon | 79855007 | 79855116 | 79855007 | ID=MS.gene81387.t1.exon3;Parent=MS.gene81387.t1 |
| chr5.2 | CDS | 79855007 | 79855116 | 79855007 | ID=cds.MS.gene81387.t1;Parent=MS.gene81387.t1 |
| chr5.2 | exon | 79855482 | 79856171 | 79855482 | ID=MS.gene81387.t1.exon4;Parent=MS.gene81387.t1 |
| chr5.2 | CDS | 79855482 | 79856171 | 79855482 | ID=cds.MS.gene81387.t1;Parent=MS.gene81387.t1 |
| chr5.2 | exon | 79856336 | 79856653 | 79856336 | ID=MS.gene81387.t1.exon5;Parent=MS.gene81387.t1 |
| chr5.2 | CDS | 79856336 | 79856653 | 79856336 | ID=cds.MS.gene81387.t1;Parent=MS.gene81387.t1 |
| Gene Sequence |
| Protein sequence |
