Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82387.t1 | XP_003607813.1 | 97.5 | 647 | 15 | 1 | 1 | 647 | 1 | 646 | 0.00E+00 | 1237.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82387.t1 | Q8JFW1 | 35.4 | 633 | 317 | 16 | 53 | 628 | 7 | 604 | 1.6e-83 | 312.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82387.t1 | G7JHJ3 | 97.5 | 647 | 15 | 1 | 1 | 647 | 1 | 646 | 0.0e+00 | 1237.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049207 | MS.gene82387 | 0.822318 | 2.53E-53 | -1.69E-46 |
| MS.gene049254 | MS.gene82387 | 0.816445 | 5.51E-52 | -1.69E-46 |
| MS.gene049666 | MS.gene82387 | 0.818447 | 1.95E-52 | -1.69E-46 |
| MS.gene049824 | MS.gene82387 | 0.855219 | 7.31E-62 | -1.69E-46 |
| MS.gene049825 | MS.gene82387 | 0.860933 | 1.46E-63 | -1.69E-46 |
| MS.gene049873 | MS.gene82387 | 0.86381 | 1.91E-64 | -1.69E-46 |
| MS.gene050303 | MS.gene82387 | 0.815493 | 8.99E-52 | -1.69E-46 |
| MS.gene050355 | MS.gene82387 | 0.823198 | 1.58E-53 | -1.69E-46 |
| MS.gene050427 | MS.gene82387 | 0.814361 | 1.60E-51 | -1.69E-46 |
| MS.gene050559 | MS.gene82387 | 0.808826 | 2.56E-50 | -1.69E-46 |
| MS.gene051363 | MS.gene82387 | 0.819517 | 1.11E-52 | -1.69E-46 |
| MS.gene051365 | MS.gene82387 | 0.800451 | 1.43E-48 | -1.69E-46 |
| MS.gene051678 | MS.gene82387 | 0.800914 | 1.15E-48 | -1.69E-46 |
| MS.gene051744 | MS.gene82387 | 0.831202 | 1.91E-55 | -1.69E-46 |
| MS.gene05188 | MS.gene82387 | 0.801642 | 8.18E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene82387 | 0.832016 | 1.20E-55 | -1.69E-46 |
| MS.gene052582 | MS.gene82387 | 0.84239 | 2.66E-58 | -1.69E-46 |
| MS.gene052584 | MS.gene82387 | 0.833968 | 3.93E-56 | -1.69E-46 |
| MS.gene052867 | MS.gene82387 | 0.806928 | 6.48E-50 | -1.69E-46 |
| MS.gene053006 | MS.gene82387 | 0.800666 | 1.30E-48 | -1.69E-46 |
| MS.gene053080 | MS.gene82387 | 0.818329 | 2.08E-52 | -1.69E-46 |
| MS.gene05308 | MS.gene82387 | 0.80995 | 1.47E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene82387 | 0.848319 | 6.61E-60 | -1.69E-46 |
| MS.gene053294 | MS.gene82387 | 0.843613 | 1.26E-58 | -1.69E-46 |
| MS.gene05365 | MS.gene82387 | 0.811319 | 7.43E-51 | -1.69E-46 |
| MS.gene053995 | MS.gene82387 | 0.853173 | 2.85E-61 | -1.69E-46 |
| MS.gene054651 | MS.gene82387 | 0.822526 | 2.26E-53 | -1.69E-46 |
| MS.gene054657 | MS.gene82387 | 0.800628 | 1.32E-48 | -1.69E-46 |
| MS.gene055166 | MS.gene82387 | 0.820459 | 6.78E-53 | -1.69E-46 |
| MS.gene05548 | MS.gene82387 | 0.812565 | 3.98E-51 | -1.69E-46 |
| MS.gene055586 | MS.gene82387 | 0.835716 | 1.43E-56 | -1.69E-46 |
| MS.gene055589 | MS.gene82387 | 0.820451 | 6.81E-53 | -1.69E-46 |
| MS.gene055694 | MS.gene82387 | 0.801081 | 1.07E-48 | -1.69E-46 |
| MS.gene055778 | MS.gene82387 | 0.817935 | 2.55E-52 | -1.69E-46 |
| MS.gene055808 | MS.gene82387 | 0.846522 | 2.06E-59 | -1.69E-46 |
| MS.gene055841 | MS.gene82387 | 0.8039 | 2.80E-49 | -1.69E-46 |
| MS.gene056091 | MS.gene82387 | 0.831929 | 1.26E-55 | -1.69E-46 |
| MS.gene056366 | MS.gene82387 | 0.824215 | 9.11E-54 | -1.69E-46 |
| MS.gene056403 | MS.gene82387 | 0.817231 | 3.67E-52 | -1.69E-46 |
| MS.gene05659 | MS.gene82387 | 0.821318 | 4.30E-53 | -1.69E-46 |
| MS.gene056605 | MS.gene82387 | 0.803101 | 4.09E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene82387 | 0.802825 | 4.67E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene82387 | 0.816064 | 6.70E-52 | -1.69E-46 |
| MS.gene057208 | MS.gene82387 | 0.819053 | 1.42E-52 | -1.69E-46 |
| MS.gene057555 | MS.gene82387 | 0.807911 | 4.01E-50 | -1.69E-46 |
| MS.gene057693 | MS.gene82387 | 0.800142 | 1.66E-48 | -1.69E-46 |
| MS.gene058037 | MS.gene82387 | 0.815959 | 7.08E-52 | -1.69E-46 |
| MS.gene058498 | MS.gene82387 | 0.803686 | 3.10E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene82387 | 0.803183 | 3.94E-49 | -1.69E-46 |
| MS.gene058783 | MS.gene82387 | 0.805026 | 1.63E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene82387 | 0.812812 | 3.51E-51 | -1.69E-46 |
| MS.gene059317 | MS.gene82387 | 0.811922 | 5.49E-51 | -1.69E-46 |
| MS.gene05954 | MS.gene82387 | 0.868893 | 4.65E-66 | -1.69E-46 |
| MS.gene05979 | MS.gene82387 | 0.800877 | 1.17E-48 | -1.69E-46 |
| MS.gene059935 | MS.gene82387 | 0.860244 | 2.36E-63 | -1.69E-46 |
| MS.gene060365 | MS.gene82387 | 0.821139 | 4.73E-53 | -1.69E-46 |
| MS.gene060429 | MS.gene82387 | 0.81739 | 3.38E-52 | -1.69E-46 |
| MS.gene060521 | MS.gene82387 | 0.842108 | 3.16E-58 | -1.69E-46 |
| MS.gene060586 | MS.gene82387 | 0.817269 | 3.60E-52 | -1.69E-46 |
| MS.gene060830 | MS.gene82387 | 0.813175 | 2.92E-51 | -1.69E-46 |
| MS.gene061040 | MS.gene82387 | -0.801772 | 7.69E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82387.t1 | MTR_4g083180 | 97.527 | 647 | 15 | 1 | 1 | 647 | 1 | 646 | 0.0 | 1288 |
| MS.gene82387.t1 | MTR_4g083180 | 97.283 | 552 | 14 | 1 | 1 | 552 | 1 | 551 | 0.0 | 1100 |
| MS.gene82387.t1 | MTR_4g083180 | 97.107 | 553 | 15 | 1 | 1 | 553 | 1 | 552 | 0.0 | 1100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82387.t1 | AT2G03667 | 59.908 | 651 | 214 | 9 | 1 | 645 | 1 | 610 | 0.0 | 717 |
| MS.gene82387.t1 | AT2G03667 | 57.323 | 635 | 222 | 10 | 1 | 629 | 1 | 592 | 0.0 | 661 |
Find 146 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAATTTGGAAGAGAAATTT+AGG | 0.134029 | 4.2:-26315817 | MS.gene82387:CDS |
| TTTGAATTCAAACGGATTTC+TGG | 0.147977 | 4.2:-26320419 | MS.gene82387:CDS |
| TTAACATTGGAATAGCTTTA+TGG | 0.154371 | 4.2:-26316933 | MS.gene82387:CDS |
| GAATCAAATCGGAAGAATTT+TGG | 0.199066 | 4.2:-26314607 | MS.gene82387:CDS |
| TATGATACTTGCGGCATTAC+TGG | 0.227735 | 4.2:-26318906 | MS.gene82387:CDS |
| TTCTCCGCAGAGCTTCTTTC+AGG | 0.244260 | 4.2:+26322190 | None:intergenic |
| GATGTTCTTTCTACAATTAA+AGG | 0.246010 | 4.2:-26321482 | MS.gene82387:CDS |
| AGGATTCTCCTTGTTGGTTC+TGG | 0.256567 | 4.2:-26316826 | MS.gene82387:CDS |
| AACTCGACATGCAAAGAATT+TGG | 0.259227 | 4.2:-26315831 | MS.gene82387:CDS |
| ATTTGTAGGAAATCAAATTT+TGG | 0.264241 | 4.2:-26314541 | MS.gene82387:CDS |
| CGTTTCGTCGTGTTCTATAA+AGG | 0.266928 | 4.2:+26322104 | None:intergenic |
| CTACTTACTGTAAGCTTTGA+TGG | 0.268070 | 4.2:-26318147 | MS.gene82387:CDS |
| TTAGGCTAGATTTCCATTCT+TGG | 0.295521 | 4.2:-26315668 | MS.gene82387:intron |
| GAATTTGGAAGAGAAATTTA+GGG | 0.314158 | 4.2:-26315816 | MS.gene82387:CDS |
| GAATTGAACATCTTAGTTAC+TGG | 0.314500 | 4.2:-26320483 | MS.gene82387:CDS |
| ATACCAGTGGCCTGCTGATC+TGG | 0.314738 | 4.2:+26321216 | None:intergenic |
| TCTTGGATGAGGATGTTATA+AGG | 0.320991 | 4.2:-26315651 | MS.gene82387:CDS |
| CGGTGCAACTTTGCAGCTTA+GGG | 0.326746 | 4.2:-26322034 | MS.gene82387:CDS |
| TTCTTCACACCCAAGCTATC+AGG | 0.334928 | 4.2:+26322162 | None:intergenic |
| ATAGCTTTATGGCTCGCTTC+TGG | 0.341166 | 4.2:-26316922 | MS.gene82387:CDS |
| TCGGTGCAACTTTGCAGCTT+AGG | 0.341471 | 4.2:-26322035 | MS.gene82387:CDS |
| ATTGCATAGGCTGTGATATC+TGG | 0.346833 | 4.2:-26318986 | MS.gene82387:intron |
| TCCGCTTGTTCAGCCTTTAG+TGG | 0.349517 | 4.2:-26322004 | MS.gene82387:CDS |
| CGAAACATTCTGGTGTATAA+TGG | 0.352754 | 4.2:-26321973 | MS.gene82387:intron |
| GATGAACAGTGTGCTGGTTA+TGG | 0.367158 | 4.2:-26316799 | MS.gene82387:CDS |
| GGATGCTTCTCGAAACATTC+TGG | 0.367158 | 4.2:-26321983 | MS.gene82387:CDS |
| GTTCTATAAAGGATGAGATT+TGG | 0.372374 | 4.2:+26322115 | None:intergenic |
| GCCTGCTGATCTGGAGCAAC+TGG | 0.375811 | 4.2:+26321225 | None:intergenic |
| CGCTTCTGGTGGTGATGGAT+GGG | 0.378774 | 4.2:-26316908 | MS.gene82387:CDS |
| CTTGGATGAGGATGTTATAA+GGG | 0.386802 | 4.2:-26315650 | MS.gene82387:CDS |
| TGATGCTGACTTGTCAGATT+TGG | 0.390352 | 4.2:-26317104 | MS.gene82387:CDS |
| TTGGGGAAGTTGAGTGGAAT+GGG | 0.390754 | 4.2:+26322461 | None:intergenic |
| CTGAAGGTTGCACAATTGCT+TGG | 0.402771 | 4.2:-26314778 | MS.gene82387:intron |
| TTCTATTGCAGGATAGTTCA+AGG | 0.406323 | 4.2:-26321344 | MS.gene82387:intron |
| GCAGAAAATGAAGCTCATAA+TGG | 0.407580 | 4.2:-26320505 | MS.gene82387:intron |
| TCGCTTCTGGTGGTGATGGA+TGG | 0.408976 | 4.2:-26316909 | MS.gene82387:CDS |
| TCCTGTGGTTCTTATTTGAC+TGG | 0.408994 | 4.2:-26321539 | MS.gene82387:CDS |
| TCTTCCCAAGCGGGCAATCC+AGG | 0.409100 | 4.2:-26314737 | MS.gene82387:intron |
| GCACACCTGGATTGCCCGCT+TGG | 0.411228 | 4.2:+26314732 | None:intergenic |
| AATGCAAGGATTCTCCTTGT+TGG | 0.411893 | 4.2:-26316832 | MS.gene82387:CDS |
| ATGAACAGTGTGCTGGTTAT+GGG | 0.415694 | 4.2:-26316798 | MS.gene82387:CDS |
| GTCATTGTATACTATCTATC+AGG | 0.417008 | 4.2:-26319987 | MS.gene82387:intron |
| CTTGGGAATTGTTGCTCCTG+TGG | 0.427510 | 4.2:-26321554 | MS.gene82387:CDS |
| CAGGCAGTGTAAGGATTTGT+AGG | 0.429146 | 4.2:-26314555 | MS.gene82387:CDS |
| AGGATAGTTCAAGGACCCTT+TGG | 0.431242 | 4.2:-26321335 | MS.gene82387:CDS |
| AAGTAATCGAGCAGCAAATC+AGG | 0.431308 | 4.2:-26314584 | MS.gene82387:CDS |
| ATAAAGCTATTCCAATGTTA+AGG | 0.439997 | 4.2:+26316935 | None:intergenic |
| GGAATTGCATTGACCGTCTC+AGG | 0.441436 | 4.2:-26322508 | MS.gene82387:CDS |
| GGCGGAGCCTTCTTGTTCAC+TGG | 0.445360 | 4.2:-26321290 | MS.gene82387:CDS |
| AGTTCAAGGACCCTTTGGTT+TGG | 0.446623 | 4.2:-26321330 | MS.gene82387:CDS |
| GACCATGGGCTATCATCTAT+TGG | 0.452967 | 4.2:-26321460 | MS.gene82387:CDS |
| AGTTTCTTATGCAGACTCTT+GGG | 0.458584 | 4.2:-26321571 | MS.gene82387:CDS |
| AGGCGTCTGCAGGCAGTGTA+AGG | 0.458985 | 4.2:-26314564 | MS.gene82387:CDS |
| CACACCTGGATTGCCCGCTT+GGG | 0.462355 | 4.2:+26314733 | None:intergenic |
| TTTGGGGAAGTTGAGTGGAA+TGG | 0.465230 | 4.2:+26322460 | None:intergenic |
| AGTTGAGTGGAATGGGAGAG+AGG | 0.468545 | 4.2:+26322468 | None:intergenic |
| AGCACTCACAACTGGGATCC+AGG | 0.469254 | 4.2:+26318876 | None:intergenic |
| GAGAAGAGGTCCTGATAGCT+TGG | 0.474458 | 4.2:-26322172 | MS.gene82387:CDS |
| TGGTTTGGCCGAGATGCATT+TGG | 0.474834 | 4.2:-26321315 | MS.gene82387:CDS |
| TGGCTCGCTTCTGGTGGTGA+TGG | 0.475719 | 4.2:-26316913 | MS.gene82387:CDS |
| ATAGATGTATTGCTGATAAC+GGG | 0.477324 | 4.2:-26315786 | MS.gene82387:CDS |
| GAGTTTCTTATGCAGACTCT+TGG | 0.484407 | 4.2:-26321572 | MS.gene82387:CDS |
| GATAGAAAATCTGCCAAGGC+AGG | 0.484885 | 4.2:-26318111 | MS.gene82387:CDS |
| TTTACTCAACATTCCATTGT+GGG | 0.487822 | 4.2:-26315626 | MS.gene82387:CDS |
| TAGTTCTTTCAACCCTGCCT+TGG | 0.492382 | 4.2:+26318098 | None:intergenic |
| TTCTACAATTAAAGGACCAT+GGG | 0.492445 | 4.2:-26321474 | MS.gene82387:CDS |
| GTGGATGCTTTGAATTCAAA+CGG | 0.493029 | 4.2:-26320427 | MS.gene82387:CDS |
| GCAGCAAATCAGGCGTCTGC+AGG | 0.493660 | 4.2:-26314574 | MS.gene82387:CDS |
| TAGATTTCCATTCTTGGATG+AGG | 0.494104 | 4.2:-26315662 | MS.gene82387:CDS |
| TGGATTGCATACCGTCTTGA+CGG | 0.499284 | 4.2:+26318063 | None:intergenic |
| GCCAGTTGCTCCAGATCAGC+AGG | 0.501944 | 4.2:-26321226 | MS.gene82387:CDS |
| ATATACAAACTCAACATTGA+AGG | 0.502927 | 4.2:-26320374 | MS.gene82387:CDS |
| CCAGAGAAAAGAATTGCAAC+AGG | 0.504982 | 4.2:+26318941 | None:intergenic |
| GATAGATGTATTGCTGATAA+CGG | 0.505667 | 4.2:-26315787 | MS.gene82387:CDS |
| TATGCCTTAATCAGTTGGCT+AGG | 0.505853 | 4.2:-26315871 | MS.gene82387:intron |
| GGCGATTTGGGGAAGTTGAG+TGG | 0.513848 | 4.2:+26322455 | None:intergenic |
| TTTCTACAATTAAAGGACCA+TGG | 0.517454 | 4.2:-26321475 | MS.gene82387:CDS |
| ATGCATCTCGGCCAAACCAA+AGG | 0.517811 | 4.2:+26321319 | None:intergenic |
| GAATTGCGAGGGAATCAAAT+CGG | 0.518766 | 4.2:-26314618 | MS.gene82387:CDS |
| GAGACAGTTCCATGCGAAGC+AGG | 0.526342 | 4.2:-26320244 | MS.gene82387:intron |
| GATTAGTACCATGTAGGTGT+TGG | 0.527041 | 4.2:+26317042 | None:intergenic |
| AATTGAACATCTTAGTTACT+GGG | 0.534296 | 4.2:-26320482 | MS.gene82387:CDS |
| AGAAGAGGTCCTGATAGCTT+GGG | 0.535911 | 4.2:-26322171 | MS.gene82387:CDS |
| GCCACTAGGTTGATCAAGGT+TGG | 0.537230 | 4.2:+26315597 | None:intergenic |
| GCCGAGATGCATTTGGTAGG+CGG | 0.538103 | 4.2:-26321308 | MS.gene82387:CDS |
| ATAACATCCTCATCCAAGAA+TGG | 0.538611 | 4.2:+26315655 | None:intergenic |
| TTTCGAGAAGCATCCACTAA+AGG | 0.538876 | 4.2:+26321991 | None:intergenic |
| TGCATCTCGGCCAAACCAAA+GGG | 0.542020 | 4.2:+26321320 | None:intergenic |
| ATGGGCTATCATCTATTGGC+AGG | 0.544781 | 4.2:-26321456 | MS.gene82387:intron |
| ATGCCTTAATCAGTTGGCTA+GGG | 0.546300 | 4.2:-26315870 | MS.gene82387:intron |
| GGCATTACTGGATCAATGCC+TGG | 0.546449 | 4.2:-26318894 | MS.gene82387:CDS |
| CGATGCCACTAGGTTGATCA+AGG | 0.546600 | 4.2:+26315593 | None:intergenic |
| AACAAGGAGAATCCTTGCAT+TGG | 0.546989 | 4.2:+26316834 | None:intergenic |
| AACGGAGAACTTCATTTCAT+CGG | 0.547006 | 4.2:-26322054 | MS.gene82387:CDS |
| AACTGTGTTAAATGCGGGAA+AGG | 0.547646 | 4.2:-26321515 | MS.gene82387:CDS |
| GGTGCTGATGAACAGTGTGC+TGG | 0.549892 | 4.2:-26316805 | MS.gene82387:CDS |
| GCTCCAGATCAGCAGGCCAC+TGG | 0.553421 | 4.2:-26321219 | MS.gene82387:intron |
| ACTTAGGGCAGGATGTCTGC+AGG | 0.555484 | 4.2:+26320305 | None:intergenic |
| TAGTAATAACCTGCTTCGCA+TGG | 0.561332 | 4.2:+26320235 | None:intergenic |
| AAAGAAGCTCTGCGGAGAAG+AGG | 0.562727 | 4.2:-26322186 | MS.gene82387:CDS |
| AATTCAAACGGATTTCTGGT+TGG | 0.568435 | 4.2:-26320415 | MS.gene82387:CDS |
| TTGGCCGAGATGCATTTGGT+AGG | 0.570304 | 4.2:-26321311 | MS.gene82387:CDS |
| CTTGATCAACCTAGTGGCAT+CGG | 0.570501 | 4.2:-26315592 | MS.gene82387:CDS |
| TCCACTAAAGGCTGAACAAG+CGG | 0.574215 | 4.2:+26322003 | None:intergenic |
| AGCAGCGGTTCTTCCCAAGC+GGG | 0.574387 | 4.2:-26314746 | MS.gene82387:CDS |
| AGTACCATGTAGGTGTTGGA+AGG | 0.577841 | 4.2:+26317046 | None:intergenic |
| AGCAACATATGAGCTCGCAT+TGG | 0.577951 | 4.2:+26320043 | None:intergenic |
| ACCAGTCAAATAAGAACCAC+AGG | 0.577955 | 4.2:+26321538 | None:intergenic |
| AAAGTTGAATCATCTTCTGT+AGG | 0.580809 | 4.2:+26321267 | None:intergenic |
| AAATCCTTCCAACACCTACA+TGG | 0.583957 | 4.2:-26317050 | MS.gene82387:intron |
| TCCGCCTACCAAATGCATCT+CGG | 0.585873 | 4.2:+26321307 | None:intergenic |
| GCTTTATGGCTCGCTTCTGG+TGG | 0.587213 | 4.2:-26316919 | MS.gene82387:CDS |
| GGTGCAACTTTGCAGCTTAG+GGG | 0.596413 | 4.2:-26322033 | MS.gene82387:CDS |
| GTTTGGTTCTAGAATTGCGA+GGG | 0.601355 | 4.2:-26314629 | MS.gene82387:CDS |
| AGGTTGGCAACCTCCCACAA+TGG | 0.602775 | 4.2:+26315613 | None:intergenic |
| CTGGTAACTGTGTTAAATGC+GGG | 0.603339 | 4.2:-26321520 | MS.gene82387:CDS |
| AGGATTGATTAGTACCATGT+AGG | 0.603931 | 4.2:+26317036 | None:intergenic |
| ACTCAACATTCCATTGTGGG+AGG | 0.607103 | 4.2:-26315623 | MS.gene82387:CDS |
| AAGAGTCTGCATAAGAAACT+CGG | 0.611073 | 4.2:+26321574 | None:intergenic |
| TTAAATACAAGTCCAATGCA+AGG | 0.613359 | 4.2:-26316846 | MS.gene82387:CDS |
| GAAGCAGAAACGAAGATGTG+TGG | 0.614701 | 4.2:-26322529 | None:intergenic |
| CATTGAAGGAACTTATCAAG+TGG | 0.615560 | 4.2:-26320360 | MS.gene82387:CDS |
| ATAGAAAATCTGCCAAGGCA+GGG | 0.618548 | 4.2:-26318110 | MS.gene82387:CDS |
| ATTGAAGGAACTTATCAAGT+GGG | 0.621233 | 4.2:-26320359 | MS.gene82387:CDS |
| CTGTAGGCCAGTGAACAAGA+AGG | 0.621892 | 4.2:+26321283 | None:intergenic |
| TCCTGATAGAAAATCTGCCA+AGG | 0.622329 | 4.2:-26318115 | MS.gene82387:CDS |
| CATCAGCACCAGAACCAACA+AGG | 0.625991 | 4.2:+26316818 | None:intergenic |
| GCTGGATTCTATGATACTTG+CGG | 0.628488 | 4.2:-26318915 | MS.gene82387:CDS |
| GTTAATTCGAATGCCTGAGA+CGG | 0.629293 | 4.2:+26322495 | None:intergenic |
| AAAGAGTTGCACCGTCAAGA+CGG | 0.637047 | 4.2:-26318074 | MS.gene82387:intron |
| TGCCAATAGATGATAGCCCA+TGG | 0.642233 | 4.2:+26321458 | None:intergenic |
| AAAGTGCAGGTGGAGACTCG+TGG | 0.644656 | 4.2:-26317131 | MS.gene82387:intron |
| ATGTATTGCTGATAACGGGA+AGG | 0.646619 | 4.2:-26315782 | MS.gene82387:CDS |
| ATAATGATGACACTCATGCA+CGG | 0.647092 | 4.2:-26316870 | MS.gene82387:CDS |
| TATTGCTGATAACGGGAAGG+AGG | 0.649083 | 4.2:-26315779 | MS.gene82387:intron |
| GCTTGGTTTATGTGAAGCAG+CGG | 0.649754 | 4.2:-26314761 | MS.gene82387:CDS |
| AAGCAGCGGTTCTTCCCAAG+CGG | 0.664513 | 4.2:-26314747 | MS.gene82387:CDS |
| CAGTTGGCTAGGGCTAGATG+AGG | 0.680335 | 4.2:-26315860 | MS.gene82387:CDS |
| TCTGCAAATGAAGACAGTAA+CGG | 0.682909 | 4.2:-26322072 | MS.gene82387:CDS |
| ACTGGTAACTGTGTTAAATG+CGG | 0.692384 | 4.2:-26321521 | MS.gene82387:CDS |
| TACTGGGAAGAGCTACCATG+TGG | 0.698665 | 4.2:-26320466 | MS.gene82387:CDS |
| GCCAACCTTGATCAACCTAG+TGG | 0.703456 | 4.2:-26315598 | MS.gene82387:CDS |
| TGCATACTATATATTCCACA+TGG | 0.727847 | 4.2:+26320451 | None:intergenic |
| ATGACCTGAAAGAAGCTCTG+CGG | 0.729969 | 4.2:-26322194 | MS.gene82387:CDS |
| AGTTTGGTTCTAGAATTGCG+AGG | 0.738420 | 4.2:-26314630 | MS.gene82387:CDS |
| TGGAATATATAGTATGCACG+TGG | 0.745413 | 4.2:-26320446 | MS.gene82387:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 26314537 | 26322536 | 26314537 | ID=MS.gene82387 |
| chr4.2 | mRNA | 26314537 | 26322536 | 26314537 | ID=MS.gene82387.t1;Parent=MS.gene82387 |
| chr4.2 | exon | 26322444 | 26322536 | 26322444 | ID=MS.gene82387.t1.exon1;Parent=MS.gene82387.t1 |
| chr4.2 | CDS | 26322444 | 26322536 | 26322444 | ID=cds.MS.gene82387.t1;Parent=MS.gene82387.t1 |
| chr4.2 | exon | 26321974 | 26322232 | 26321974 | ID=MS.gene82387.t1.exon2;Parent=MS.gene82387.t1 |
| chr4.2 | CDS | 26321974 | 26322232 | 26321974 | ID=cds.MS.gene82387.t1;Parent=MS.gene82387.t1 |
| chr4.2 | exon | 26321457 | 26321641 | 26321457 | ID=MS.gene82387.t1.exon3;Parent=MS.gene82387.t1 |
| chr4.2 | CDS | 26321457 | 26321641 | 26321457 | ID=cds.MS.gene82387.t1;Parent=MS.gene82387.t1 |
| chr4.2 | exon | 26321220 | 26321355 | 26321220 | ID=MS.gene82387.t1.exon4;Parent=MS.gene82387.t1 |
| chr4.2 | CDS | 26321220 | 26321355 | 26321220 | ID=cds.MS.gene82387.t1;Parent=MS.gene82387.t1 |
| chr4.2 | exon | 26320245 | 26320523 | 26320245 | ID=MS.gene82387.t1.exon5;Parent=MS.gene82387.t1 |
| chr4.2 | CDS | 26320245 | 26320523 | 26320245 | ID=cds.MS.gene82387.t1;Parent=MS.gene82387.t1 |
| chr4.2 | exon | 26319988 | 26320085 | 26319988 | ID=MS.gene82387.t1.exon6;Parent=MS.gene82387.t1 |
| chr4.2 | CDS | 26319988 | 26320085 | 26319988 | ID=cds.MS.gene82387.t1;Parent=MS.gene82387.t1 |
| chr4.2 | exon | 26318885 | 26318999 | 26318885 | ID=MS.gene82387.t1.exon7;Parent=MS.gene82387.t1 |
| chr4.2 | CDS | 26318885 | 26318999 | 26318885 | ID=cds.MS.gene82387.t1;Parent=MS.gene82387.t1 |
| chr4.2 | exon | 26318075 | 26318180 | 26318075 | ID=MS.gene82387.t1.exon8;Parent=MS.gene82387.t1 |
| chr4.2 | CDS | 26318075 | 26318180 | 26318075 | ID=cds.MS.gene82387.t1;Parent=MS.gene82387.t1 |
| chr4.2 | exon | 26317051 | 26317144 | 26317051 | ID=MS.gene82387.t1.exon9;Parent=MS.gene82387.t1 |
| chr4.2 | CDS | 26317051 | 26317144 | 26317051 | ID=cds.MS.gene82387.t1;Parent=MS.gene82387.t1 |
| chr4.2 | exon | 26316769 | 26316959 | 26316769 | ID=MS.gene82387.t1.exon10;Parent=MS.gene82387.t1 |
| chr4.2 | CDS | 26316769 | 26316959 | 26316769 | ID=cds.MS.gene82387.t1;Parent=MS.gene82387.t1 |
| chr4.2 | exon | 26315780 | 26315879 | 26315780 | ID=MS.gene82387.t1.exon11;Parent=MS.gene82387.t1 |
| chr4.2 | CDS | 26315780 | 26315879 | 26315780 | ID=cds.MS.gene82387.t1;Parent=MS.gene82387.t1 |
| chr4.2 | exon | 26315570 | 26315686 | 26315570 | ID=MS.gene82387.t1.exon12;Parent=MS.gene82387.t1 |
| chr4.2 | CDS | 26315570 | 26315686 | 26315570 | ID=cds.MS.gene82387.t1;Parent=MS.gene82387.t1 |
| chr4.2 | exon | 26314738 | 26314794 | 26314738 | ID=MS.gene82387.t1.exon13;Parent=MS.gene82387.t1 |
| chr4.2 | CDS | 26314738 | 26314794 | 26314738 | ID=cds.MS.gene82387.t1;Parent=MS.gene82387.t1 |
| chr4.2 | exon | 26314537 | 26314650 | 26314537 | ID=MS.gene82387.t1.exon14;Parent=MS.gene82387.t1 |
| chr4.2 | CDS | 26314537 | 26314650 | 26314537 | ID=cds.MS.gene82387.t1;Parent=MS.gene82387.t1 |
| Gene Sequence |
| Protein sequence |
