Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84544.t1 | XP_003600478.1 | 99.6 | 223 | 1 | 0 | 1 | 223 | 1 | 223 | 4.80E-124 | 453.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84544.t1 | Q8L9X2 | 54.1 | 220 | 82 | 3 | 1 | 219 | 1 | 202 | 4.2e-60 | 232.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84544.t1 | G7J266 | 99.6 | 223 | 1 | 0 | 1 | 223 | 1 | 223 | 3.4e-124 | 453.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049170 | MS.gene84544 | 0.80202 | 6.84E-49 | -1.69E-46 |
| MS.gene04932 | MS.gene84544 | -0.811256 | 7.67E-51 | -1.69E-46 |
| MS.gene049356 | MS.gene84544 | 0.803682 | 3.10E-49 | -1.69E-46 |
| MS.gene049396 | MS.gene84544 | 0.841627 | 4.24E-58 | -1.69E-46 |
| MS.gene049757 | MS.gene84544 | 0.873701 | 1.20E-67 | -1.69E-46 |
| MS.gene050060 | MS.gene84544 | 0.818521 | 1.88E-52 | -1.69E-46 |
| MS.gene050133 | MS.gene84544 | -0.832089 | 1.15E-55 | -1.69E-46 |
| MS.gene050400 | MS.gene84544 | 0.811989 | 5.31E-51 | -1.69E-46 |
| MS.gene050426 | MS.gene84544 | -0.817637 | 2.97E-52 | -1.69E-46 |
| MS.gene050502 | MS.gene84544 | 0.800315 | 1.53E-48 | -1.69E-46 |
| MS.gene050553 | MS.gene84544 | 0.831795 | 1.36E-55 | -1.69E-46 |
| MS.gene050670 | MS.gene84544 | 0.833394 | 5.47E-56 | -1.69E-46 |
| MS.gene050971 | MS.gene84544 | 0.810631 | 1.05E-50 | -1.69E-46 |
| MS.gene05105 | MS.gene84544 | 0.814719 | 1.33E-51 | -1.69E-46 |
| MS.gene051521 | MS.gene84544 | 0.8467 | 1.84E-59 | -1.69E-46 |
| MS.gene051525 | MS.gene84544 | 0.806287 | 8.85E-50 | -1.69E-46 |
| MS.gene051838 | MS.gene84544 | 0.803877 | 2.83E-49 | -1.69E-46 |
| MS.gene052134 | MS.gene84544 | 0.815671 | 8.20E-52 | -1.69E-46 |
| MS.gene052135 | MS.gene84544 | 0.811856 | 5.68E-51 | -1.69E-46 |
| MS.gene052136 | MS.gene84544 | 0.812101 | 5.02E-51 | -1.69E-46 |
| MS.gene052188 | MS.gene84544 | 0.800656 | 1.30E-48 | -1.69E-46 |
| MS.gene052340 | MS.gene84544 | 0.800787 | 1.22E-48 | -1.69E-46 |
| MS.gene052346 | MS.gene84544 | 0.808723 | 2.69E-50 | -1.69E-46 |
| MS.gene05240 | MS.gene84544 | -0.807509 | 4.88E-50 | -1.69E-46 |
| MS.gene052414 | MS.gene84544 | 0.863385 | 2.59E-64 | -1.69E-46 |
| MS.gene052469 | MS.gene84544 | 0.834421 | 3.03E-56 | -1.69E-46 |
| MS.gene053169 | MS.gene84544 | 0.819962 | 8.82E-53 | -1.69E-46 |
| MS.gene05316 | MS.gene84544 | 0.806629 | 7.50E-50 | -1.69E-46 |
| MS.gene053449 | MS.gene84544 | 0.843976 | 1.01E-58 | -1.69E-46 |
| MS.gene053889 | MS.gene84544 | 0.838364 | 3.00E-57 | -1.69E-46 |
| MS.gene053912 | MS.gene84544 | 0.842255 | 2.89E-58 | -1.69E-46 |
| MS.gene054181 | MS.gene84544 | -0.809689 | 1.67E-50 | -1.69E-46 |
| MS.gene054349 | MS.gene84544 | 0.821697 | 3.52E-53 | -1.69E-46 |
| MS.gene054556 | MS.gene84544 | 0.815818 | 7.61E-52 | -1.69E-46 |
| MS.gene054742 | MS.gene84544 | -0.800518 | 1.39E-48 | -1.69E-46 |
| MS.gene054884 | MS.gene84544 | -0.806867 | 6.68E-50 | -1.69E-46 |
| MS.gene05494 | MS.gene84544 | 0.810355 | 1.20E-50 | -1.69E-46 |
| MS.gene055116 | MS.gene84544 | 0.812079 | 5.08E-51 | -1.69E-46 |
| MS.gene055539 | MS.gene84544 | 0.836627 | 8.37E-57 | -1.69E-46 |
| MS.gene05556 | MS.gene84544 | 0.829786 | 4.24E-55 | -1.69E-46 |
| MS.gene055741 | MS.gene84544 | 0.886205 | 4.19E-72 | -1.69E-46 |
| MS.gene055744 | MS.gene84544 | 0.895346 | 1.05E-75 | -1.69E-46 |
| MS.gene055909 | MS.gene84544 | 0.801201 | 1.01E-48 | -1.69E-46 |
| MS.gene055911 | MS.gene84544 | 0.802019 | 6.84E-49 | -1.69E-46 |
| MS.gene056166 | MS.gene84544 | 0.800128 | 1.67E-48 | -1.69E-46 |
| MS.gene056233 | MS.gene84544 | 0.803392 | 3.56E-49 | -1.69E-46 |
| MS.gene056387 | MS.gene84544 | 0.802683 | 4.99E-49 | -1.69E-46 |
| MS.gene056422 | MS.gene84544 | 0.82291 | 1.84E-53 | -1.69E-46 |
| MS.gene056511 | MS.gene84544 | 0.821462 | 3.99E-53 | -1.69E-46 |
| MS.gene057019 | MS.gene84544 | 0.812523 | 4.06E-51 | -1.69E-46 |
| MS.gene057396 | MS.gene84544 | 0.820903 | 5.36E-53 | -1.69E-46 |
| MS.gene057537 | MS.gene84544 | 0.818821 | 1.60E-52 | -1.69E-46 |
| MS.gene057734 | MS.gene84544 | 0.812554 | 4.00E-51 | -1.69E-46 |
| MS.gene058007 | MS.gene84544 | 0.80627 | 8.92E-50 | -1.69E-46 |
| MS.gene058120 | MS.gene84544 | 0.816059 | 6.72E-52 | -1.69E-46 |
| MS.gene058448 | MS.gene84544 | 0.82287 | 1.88E-53 | -1.69E-46 |
| MS.gene058700 | MS.gene84544 | 0.808631 | 2.82E-50 | -1.69E-46 |
| MS.gene058928 | MS.gene84544 | 0.814377 | 1.59E-51 | -1.69E-46 |
| MS.gene059366 | MS.gene84544 | 0.80512 | 1.56E-49 | -1.69E-46 |
| MS.gene059402 | MS.gene84544 | -0.823537 | 1.31E-53 | -1.69E-46 |
| MS.gene059674 | MS.gene84544 | 0.81094 | 8.98E-51 | -1.69E-46 |
| MS.gene059717 | MS.gene84544 | 0.870966 | 9.78E-67 | -1.69E-46 |
| MS.gene059807 | MS.gene84544 | 0.870075 | 1.92E-66 | -1.69E-46 |
| MS.gene060372 | MS.gene84544 | 0.862861 | 3.75E-64 | -1.69E-46 |
| MS.gene06097 | MS.gene84544 | 0.831861 | 1.31E-55 | -1.69E-46 |
| MS.gene061154 | MS.gene84544 | 0.843197 | 1.63E-58 | -1.69E-46 |
| MS.gene061159 | MS.gene84544 | 0.803259 | 3.80E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84544.t1 | MTR_3g061630 | 99.552 | 223 | 1 | 0 | 1 | 223 | 1 | 223 | 1.30e-169 | 466 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84544.t1 | AT5G19855 | 54.091 | 220 | 82 | 3 | 1 | 219 | 1 | 202 | 1.05e-81 | 243 |
| MS.gene84544.t1 | AT5G19855 | 45.679 | 162 | 69 | 3 | 1 | 161 | 1 | 144 | 1.75e-43 | 144 |
Find 44 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTTAACCTTTATGCTAAA+TGG | 0.110147 | 3.1:+46274684 | MS.gene84544:CDS |
| TTATAAAACCACGTATATTT+AGG | 0.215191 | 3.1:-46272747 | None:intergenic |
| TTGACTCTCCATTCCCTTCC+AGG | 0.282181 | 3.1:-46271808 | None:intergenic |
| GTGGGAGCAATATCTGTTAT+TGG | 0.291042 | 3.1:+46271604 | MS.gene84544:CDS |
| GCGCGGCGGCGGAAGAACTA+TGG | 0.291206 | 3.1:+46271762 | MS.gene84544:CDS |
| CCTTGACCCATTTAGCATAA+AGG | 0.329549 | 3.1:-46274691 | None:intergenic |
| TTTGATGGGAAAGAAGCATT+TGG | 0.380847 | 3.1:+46271735 | MS.gene84544:CDS |
| GACAGCAGCTCAGAATTAAT+TGG | 0.381941 | 3.1:+46274907 | MS.gene84544:CDS |
| GCTTAACCTTTATGCTAAAT+GGG | 0.410431 | 3.1:+46274685 | MS.gene84544:CDS |
| TTGAGATTCATATTAGTTGT+TGG | 0.412533 | 3.1:-46271679 | None:intergenic |
| TGTTATTGGTTCATCAATGA+TGG | 0.412805 | 3.1:+46271618 | MS.gene84544:CDS |
| CGCGGCGGCGGAAGAACTAT+GGG | 0.427517 | 3.1:+46271763 | MS.gene84544:CDS |
| GTTACCATTGTTAGTGAGCT+TGG | 0.439389 | 3.1:+46271874 | MS.gene84544:CDS |
| GACTCATGGAGACAGTAATA+TGG | 0.445142 | 3.1:+46274875 | MS.gene84544:CDS |
| ACTAATATGAATCTCAAGAT+TGG | 0.454557 | 3.1:+46271685 | MS.gene84544:CDS |
| AGAAGCAACGCAGTAATGAT+AGG | 0.467537 | 3.1:+46271848 | MS.gene84544:CDS |
| TTCTGAGCTGCTGTCATCTG+AGG | 0.484742 | 3.1:-46274899 | None:intergenic |
| TCAAATATCAGATGAAAACT+TGG | 0.498143 | 3.1:+46274837 | MS.gene84544:CDS |
| ATGAATCTCAAGATTGGTTG+TGG | 0.515787 | 3.1:+46271691 | MS.gene84544:CDS |
| AGAGTACCTTCCCAAGCAAT+CGG | 0.524539 | 3.1:-46274287 | None:intergenic |
| TGAGCTTGGTGGTCAATATG+AGG | 0.525773 | 3.1:+46271888 | MS.gene84544:CDS |
| TAAAACCACGTATATTTAGG+TGG | 0.529191 | 3.1:-46272744 | None:intergenic |
| CATTTGGAAAAGCGCGGCGG+CGG | 0.533131 | 3.1:+46271751 | MS.gene84544:CDS |
| GTTGATGAGGGAACGACTCA+TGG | 0.541090 | 3.1:+46274861 | MS.gene84544:CDS |
| CTGAAAGAGTGATGTTGACT+CGG | 0.544416 | 3.1:+46274663 | MS.gene84544:CDS |
| ATGAAAACTTGGAGTTGATG+AGG | 0.546304 | 3.1:+46274848 | MS.gene84544:CDS |
| GCTCAACTATTTCACGTACA+AGG | 0.554693 | 3.1:+46272683 | MS.gene84544:CDS |
| ACCATTGTTAGTGAGCTTGG+TGG | 0.561493 | 3.1:+46271877 | MS.gene84544:CDS |
| TGAAAACTTGGAGTTGATGA+GGG | 0.575874 | 3.1:+46274849 | MS.gene84544:CDS |
| CCTTTATGCTAAATGGGTCA+AGG | 0.576109 | 3.1:+46274691 | MS.gene84544:CDS |
| TCTGAGCTGCTGTCATCTGA+GGG | 0.576725 | 3.1:-46274898 | None:intergenic |
| AAAACCACGTATATTTAGGT+GGG | 0.578910 | 3.1:-46272743 | None:intergenic |
| TTACTGATCCTGGAAGGGAA+TGG | 0.584500 | 3.1:+46271800 | MS.gene84544:CDS |
| GTATCAAACAAACCACAAGA+TGG | 0.596691 | 3.1:+46274252 | MS.gene84544:CDS |
| AGTGCATCCACACACAAACA+TGG | 0.606637 | 3.1:-46271655 | None:intergenic |
| TTGTGAGAGAGGAATATGGT+GGG | 0.625325 | 3.1:+46271586 | None:intergenic |
| ACCACCAAGCTCACTAACAA+TGG | 0.632085 | 3.1:-46271878 | None:intergenic |
| CACAGGTCCATGTTTGTGTG+TGG | 0.651586 | 3.1:+46271648 | MS.gene84544:CDS |
| TCAATGATGGACTCACACAC+AGG | 0.660019 | 3.1:+46271631 | MS.gene84544:CDS |
| AAGAAGCATTTGGAAAAGCG+CGG | 0.684459 | 3.1:+46271745 | MS.gene84544:CDS |
| ATTTCACGTACAAGGCTGTG+AGG | 0.686265 | 3.1:+46272691 | MS.gene84544:CDS |
| AAGCATTTGGAAAAGCGCGG+CGG | 0.723101 | 3.1:+46271748 | MS.gene84544:CDS |
| GCGGCGGCGGAAGAACTATG+GGG | 0.724394 | 3.1:+46271764 | MS.gene84544:CDS |
| TGAACCCACCTAAATATACG+TGG | 0.753733 | 3.1:+46272739 | MS.gene84544:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAAAGTAGAAAAAAAA+AGG | - | chr3.1:46273746-46273765 | None:intergenic | 10.0% |
| !!! | CTTTTATATAAATTAGAATA+TGG | + | chr3.1:46272554-46272573 | MS.gene84544:intron | 10.0% |
| !!! | TTTGTATTTAAAATCTTATT+AGG | + | chr3.1:46272111-46272130 | MS.gene84544:intron | 10.0% |
| !! | AAATAGAAACATTATATTCA+AGG | - | chr3.1:46272815-46272834 | None:intergenic | 15.0% |
| !! | AAATGAATATGAATTATTCA+TGG | - | chr3.1:46274622-46274641 | None:intergenic | 15.0% |
| !! | AGATTAATATTGTTAAACAA+TGG | - | chr3.1:46274781-46274800 | None:intergenic | 15.0% |
| !! | ATATACTTCCTTAAAATAAT+TGG | + | chr3.1:46273412-46273431 | MS.gene84544:intron | 15.0% |
| !! | TTCAAATTCAAATGTATTAT+TGG | - | chr3.1:46274576-46274595 | None:intergenic | 15.0% |
| !! | AAGTAATTACCATACTATAT+GGG | - | chr3.1:46274188-46274207 | None:intergenic | 20.0% |
| !! | AATTCTATAGTTCATAGTTA+CGG | + | chr3.1:46272461-46272480 | MS.gene84544:intron | 20.0% |
| !! | AGATGAAATGAATAATAACT+AGG | - | chr3.1:46274324-46274343 | None:intergenic | 20.0% |
| !! | ATAATTCATATTCATTTGAC+AGG | + | chr3.1:46274625-46274644 | MS.gene84544:intron | 20.0% |
| !! | ATAGTTATAGCATCAATATT+CGG | - | chr3.1:46272154-46272173 | None:intergenic | 20.0% |
| !! | CATATAAAGATTAAAAGTTG+AGG | - | chr3.1:46272315-46272334 | None:intergenic | 20.0% |
| !! | GATAGATGAAAGAATTATTT+AGG | - | chr3.1:46273638-46273657 | None:intergenic | 20.0% |
| !! | GATGAAATGAATAATAACTA+GGG | - | chr3.1:46274323-46274342 | None:intergenic | 20.0% |
| !! | TAAGTAATTACCATACTATA+TGG | - | chr3.1:46274189-46274208 | None:intergenic | 20.0% |
| !! | TTATAAAACCACGTATATTT+AGG | - | chr3.1:46272750-46272769 | None:intergenic | 20.0% |
| !!! | AAACAAGTCTTTTAACTAAA+AGG | - | chr3.1:46273516-46273535 | None:intergenic | 20.0% |
| !!! | AACATCAACTTTTTTCTTAA+AGG | - | chr3.1:46274112-46274131 | None:intergenic | 20.0% |
| !!! | AAGTACATTCATATTTCTAA+TGG | - | chr3.1:46272393-46272412 | None:intergenic | 20.0% |
| !!! | ACATGTAAAATAATTTGTGA+AGG | + | chr3.1:46274749-46274768 | MS.gene84544:intron | 20.0% |
| !!! | AGGGAAAAAAAGTATTAAAA+AGG | - | chr3.1:46273310-46273329 | None:intergenic | 20.0% |
| !!! | ATTTATGTTTTGTTCTATGT+TGG | + | chr3.1:46274219-46274238 | MS.gene84544:intron | 20.0% |
| !!! | CAAATTATTTTACATGTCTT+TGG | - | chr3.1:46274746-46274765 | None:intergenic | 20.0% |
| !!! | TAACATGATCTAAATTTTGT+TGG | + | chr3.1:46271935-46271954 | MS.gene84544:intron | 20.0% |
| !!! | TAATCAATTTGCTTTTATGT+CGG | - | chr3.1:46273052-46273071 | None:intergenic | 20.0% |
| !!! | TTTAGTTAAAAGACTTGTTT+GGG | + | chr3.1:46273516-46273535 | MS.gene84544:intron | 20.0% |
| !!! | TTTTAGTTAAAAGACTTGTT+TGG | + | chr3.1:46273515-46273534 | MS.gene84544:intron | 20.0% |
| ! | AAAAGTTGAGGAAATACAAA+AGG | - | chr3.1:46272303-46272322 | None:intergenic | 25.0% |
| ! | AAACAACATTGGAAAAATCT+TGG | - | chr3.1:46273261-46273280 | None:intergenic | 25.0% |
| ! | AAATCTATTAATCACTGACA+CGG | + | chr3.1:46272194-46272213 | MS.gene84544:intron | 25.0% |
| ! | AATGATCATTATTGAACAGA+AGG | - | chr3.1:46272428-46272447 | None:intergenic | 25.0% |
| ! | AATTGCAAATGTTAGTATGT+TGG | - | chr3.1:46273878-46273897 | None:intergenic | 25.0% |
| ! | ACTAATATGAATCTCAAGAT+TGG | + | chr3.1:46271685-46271704 | MS.gene84544:CDS | 25.0% |
| ! | ATACATGATGACTCTAATAT+AGG | + | chr3.1:46272861-46272880 | MS.gene84544:intron | 25.0% |
| ! | ATTATGTGTTGAACAAAAAG+AGG | + | chr3.1:46273772-46273791 | MS.gene84544:intron | 25.0% |
| ! | GTAAGTGAATTCTTTATTCT+AGG | + | chr3.1:46272770-46272789 | MS.gene84544:intron | 25.0% |
| ! | TCAAATATCAGATGAAAACT+TGG | + | chr3.1:46274837-46274856 | MS.gene84544:CDS | 25.0% |
| ! | TTATGTGTTGAACAAAAAGA+GGG | + | chr3.1:46273773-46273792 | MS.gene84544:intron | 25.0% |
| ! | TTGAGATTCATATTAGTTGT+TGG | - | chr3.1:46271682-46271701 | None:intergenic | 25.0% |
| !! | AGTTAATCAGATGCAAATTT+TGG | - | chr3.1:46274455-46274474 | None:intergenic | 25.0% |
| !! | GAGCTCATAATTTTGTTAAA+AGG | + | chr3.1:46273208-46273227 | MS.gene84544:intron | 25.0% |
| !! | GTTTGATTTAAAAGTAGACA+TGG | - | chr3.1:46273981-46274000 | None:intergenic | 25.0% |
| !! | TTAACTAAAAGGACTTGTTT+GGG | - | chr3.1:46273505-46273524 | None:intergenic | 25.0% |
| !! | TTTAACTAAAAGGACTTGTT+TGG | - | chr3.1:46273506-46273525 | None:intergenic | 25.0% |
| !! | TTTTACAATCCCATATAGTA+TGG | + | chr3.1:46274176-46274195 | MS.gene84544:intron | 25.0% |
| !!! | AACATTTTTTGAGTCAAGAT+TGG | + | chr3.1:46272071-46272090 | MS.gene84544:intron | 25.0% |
| !!! | AGTTTTCATTGATTTGAAGA+AGG | - | chr3.1:46272950-46272969 | None:intergenic | 25.0% |
| !!! | GAAACTTAAATGACTTGTTT+GGG | + | chr3.1:46273545-46273564 | MS.gene84544:intron | 25.0% |
| !!! | GCATTTGACCAATTATTTTA+AGG | - | chr3.1:46273423-46273442 | None:intergenic | 25.0% |
| !!! | TGAAACTTAAATGACTTGTT+TGG | + | chr3.1:46273544-46273563 | MS.gene84544:intron | 25.0% |
| !!! | TGAGTATAGCTATATTTTAG+TGG | - | chr3.1:46274362-46274381 | None:intergenic | 25.0% |
| AAAACCACGTATATTTAGGT+GGG | - | chr3.1:46272746-46272765 | None:intergenic | 30.0% | |
| AATTGGTCAAATGCATCTAA+AGG | + | chr3.1:46273429-46273448 | MS.gene84544:intron | 30.0% | |
| ATTTGTCCTTTAATCAGCTT+AGG | + | chr3.1:46274081-46274100 | MS.gene84544:intron | 30.0% | |
| CAAAAAGAAAATGAACACGA+CGG | - | chr3.1:46273952-46273971 | None:intergenic | 30.0% | |
| CAAAAGAAGTTAAAGGTCTA+GGG | + | chr3.1:46273829-46273848 | MS.gene84544:intron | 30.0% | |
| GAAACTTAAAGGATCACTTT+GGG | + | chr3.1:46273574-46273593 | MS.gene84544:intron | 30.0% | |
| GCTTAACCTTTATGCTAAAT+GGG | + | chr3.1:46274685-46274704 | MS.gene84544:CDS | 30.0% | |
| GGGAAAAACGAAAAACTTAA+AGG | + | chr3.1:46273594-46273613 | MS.gene84544:intron | 30.0% | |
| GGGAAAAACGAAAAACTTAA+AGG | - | chr3.1:46273613-46273594 | None:intergenic | 30.0% | |
| TAAAACCACGTATATTTAGG+TGG | - | chr3.1:46272747-46272766 | None:intergenic | 30.0% | |
| TAGCAACAAAATTGTGATAG+TGG | - | chr3.1:46272597-46272616 | None:intergenic | 30.0% | |
| TATGTGTTGAACAAAAAGAG+GGG | + | chr3.1:46273774-46273793 | MS.gene84544:intron | 30.0% | |
| TCAAAAGAAGTTAAAGGTCT+AGG | + | chr3.1:46273828-46273847 | MS.gene84544:intron | 30.0% | |
| TCTAATATGCTAGACATTAG+AGG | - | chr3.1:46273377-46273396 | None:intergenic | 30.0% | |
| TGAAACTTAAAGGATCACTT+TGG | + | chr3.1:46273573-46273592 | MS.gene84544:intron | 30.0% | |
| TGTTACAAACATTGAATCAG+AGG | - | chr3.1:46271987-46272006 | None:intergenic | 30.0% | |
| TTTAGGTCAAATGCATCTAA+AGG | - | chr3.1:46273621-46273640 | None:intergenic | 30.0% | |
| ! | AATGTTTCTATTTAGACGCA+TGG | + | chr3.1:46272822-46272841 | MS.gene84544:intron | 30.0% |
| ! | ATAAAACGTTTTCCATCTTG+TGG | - | chr3.1:46274267-46274286 | None:intergenic | 30.0% |
| ! | ATGCAAATTTTGGATACTGA+GGG | - | chr3.1:46274445-46274464 | None:intergenic | 30.0% |
| ! | CAAAATTGCTCAATTTTGTC+CGG | - | chr3.1:46273119-46273138 | None:intergenic | 30.0% |
| ! | GAAACTTAAAGGACCATTTT+GGG | - | chr3.1:46273476-46273495 | None:intergenic | 30.0% |
| ! | GAGTGTCTAGAAAAGTTTTA+TGG | - | chr3.1:46272918-46272937 | None:intergenic | 30.0% |
| ! | GATGAGTTGTTAATTTGAGA+TGG | - | chr3.1:46272489-46272508 | None:intergenic | 30.0% |
| ! | GTTTTGTGGAAGAATTTGAT+GGG | + | chr3.1:46271721-46271740 | MS.gene84544:CDS | 30.0% |
| ! | TGAAACTTAAAGGACCATTT+TGG | - | chr3.1:46273477-46273496 | None:intergenic | 30.0% |
| ! | TGTTTTGTGGAAGAATTTGA+TGG | + | chr3.1:46271720-46271739 | MS.gene84544:CDS | 30.0% |
| !! | CACTTTTGAGGATGTTAAAA+CGG | + | chr3.1:46271912-46271931 | MS.gene84544:CDS | 30.0% |
| !! | GTTTTTCGTTTTTCCCAAAA+TGG | + | chr3.1:46273460-46273479 | MS.gene84544:intron | 30.0% |
| !! | TGTTATTGGTTCATCAATGA+TGG | + | chr3.1:46271618-46271637 | MS.gene84544:CDS | 30.0% |
| !! | TTCTAGAATCAGAAGAAAGA+AGG | + | chr3.1:46273334-46273353 | MS.gene84544:intron | 30.0% |
| !!! | AGTACTTCATTTTTTGATCC+TGG | + | chr3.1:46274045-46274064 | MS.gene84544:intron | 30.0% |
| !!! | TTGGGACTTTTGAAACTTAA+AGG | + | chr3.1:46273534-46273553 | MS.gene84544:intron | 30.0% |
| !!! | TTGGGACTTTTGAAACTTAA+AGG | - | chr3.1:46273553-46273534 | None:intergenic | 30.0% |
| AAATCTTGGAGTAGAGACAT+TGG | - | chr3.1:46273247-46273266 | None:intergenic | 35.0% | |
| AAGGGGTCAAAAGAAGTTAA+AGG | + | chr3.1:46273822-46273841 | MS.gene84544:intron | 35.0% | |
| AAGTGTATGAGTGATGAAGA+AGG | - | chr3.1:46273692-46273711 | None:intergenic | 35.0% | |
| ATCCGTATCAGTGTCATATA+AGG | - | chr3.1:46272229-46272248 | None:intergenic | 35.0% | |
| ATGAGCTCAAAGCAAATGTT+GGG | - | chr3.1:46273196-46273215 | None:intergenic | 35.0% | |
| ATGATCAATGACAATGCAGT+TGG | - | chr3.1:46273287-46273306 | None:intergenic | 35.0% | |
| CACCTTATATGACACTGATA+CGG | + | chr3.1:46272224-46272243 | MS.gene84544:intron | 35.0% | |
| GGATACTGAGGGTAAAAAAA+TGG | - | chr3.1:46274434-46274453 | None:intergenic | 35.0% | |
| GGCTTAACCTTTATGCTAAA+TGG | + | chr3.1:46274684-46274703 | MS.gene84544:CDS | 35.0% | |
| GTATCAAACAAACCACAAGA+TGG | + | chr3.1:46274252-46274271 | MS.gene84544:CDS | 35.0% | |
| GTCTTGCGAATGGAAAAATT+AGG | - | chr3.1:46274526-46274545 | None:intergenic | 35.0% | |
| GTGTAACCTAAGCTGATTAA+AGG | - | chr3.1:46274090-46274109 | None:intergenic | 35.0% | |
| TATGAGCTCAAAGCAAATGT+TGG | - | chr3.1:46273197-46273216 | None:intergenic | 35.0% | |
| TGATCAATGACAATGCAGTT+GGG | - | chr3.1:46273286-46273305 | None:intergenic | 35.0% | |
| TGATCCAAAACCTAGACAAA+CGG | + | chr3.1:46273716-46273735 | MS.gene84544:intron | 35.0% | |
| TTGAACAAAAAGAGGGGAAT+GGG | + | chr3.1:46273780-46273799 | MS.gene84544:intron | 35.0% | |
| ! | AAACGTTTTATCCGATTGCT+TGG | + | chr3.1:46274276-46274295 | MS.gene84544:CDS | 35.0% |
| ! | AACGTTTTATCCGATTGCTT+GGG | + | chr3.1:46274277-46274296 | MS.gene84544:CDS | 35.0% |
| ! | AGTAGTTCTTTTACTGATCC+TGG | + | chr3.1:46271790-46271809 | MS.gene84544:CDS | 35.0% |
| ! | ATGAATCTCAAGATTGGTTG+TGG | + | chr3.1:46271691-46271710 | MS.gene84544:CDS | 35.0% |
| ! | GATGCAAATTTTGGATACTG+AGG | - | chr3.1:46274446-46274465 | None:intergenic | 35.0% |
| ! | TAAAGGTCTAGGGTTCAAAT+CGG | + | chr3.1:46273839-46273858 | MS.gene84544:intron | 35.0% |
| ! | TCAATATGAGGACACTTTTG+AGG | + | chr3.1:46271900-46271919 | MS.gene84544:CDS | 35.0% |
| ! | TGATGAAGAAGGTAGAGTTT+TGG | - | chr3.1:46273681-46273700 | None:intergenic | 35.0% |
| ! | TTCTTTTACTGATCCTGGAA+GGG | + | chr3.1:46271795-46271814 | MS.gene84544:CDS | 35.0% |
| !! | AATTTGCTTTTATGTCGGAG+AGG | - | chr3.1:46273047-46273066 | None:intergenic | 35.0% |
| !! | ATGAAAACTTGGAGTTGATG+AGG | + | chr3.1:46274848-46274867 | MS.gene84544:CDS | 35.0% |
| !! | CTTCTGATTCTAGAACACAA+GGG | - | chr3.1:46273329-46273348 | None:intergenic | 35.0% |
| !! | TCTTCTGATTCTAGAACACA+AGG | - | chr3.1:46273330-46273349 | None:intergenic | 35.0% |
| !! | TGAAAACTTGGAGTTGATGA+GGG | + | chr3.1:46274849-46274868 | MS.gene84544:CDS | 35.0% |
| !! | TTTGATGGGAAAGAAGCATT+TGG | + | chr3.1:46271735-46271754 | MS.gene84544:CDS | 35.0% |
| AGAAGCAACGCAGTAATGAT+AGG | + | chr3.1:46271848-46271867 | MS.gene84544:CDS | 40.0% | |
| AGCTTACTTGGTTGAGCTAA+GGG | + | chr3.1:46273804-46273823 | MS.gene84544:intron | 40.0% | |
| CAAATCGACTGAGATATACC+AGG | - | chr3.1:46274066-46274085 | None:intergenic | 40.0% | |
| CCTAATCCCTTTCGTCTTAA+GGG | + | chr3.1:46272888-46272907 | MS.gene84544:intron | 40.0% | |
| CCTGCTCTATAAGAACAAGA+AGG | - | chr3.1:46273149-46273168 | None:intergenic | 40.0% | |
| CCTTCTTGTTCTTATAGAGC+AGG | + | chr3.1:46273146-46273165 | MS.gene84544:intron | 40.0% | |
| CCTTGACCCATTTAGCATAA+AGG | - | chr3.1:46274694-46274713 | None:intergenic | 40.0% | |
| CCTTTATGCTAAATGGGTCA+AGG | + | chr3.1:46274691-46274710 | MS.gene84544:CDS | 40.0% | |
| GACAGCAGCTCAGAATTAAT+TGG | + | chr3.1:46274907-46274926 | MS.gene84544:CDS | 40.0% | |
| GACTCATGGAGACAGTAATA+TGG | + | chr3.1:46274875-46274894 | MS.gene84544:CDS | 40.0% | |
| GAGACTAAGTAAAGAGACTC+AGG | - | chr3.1:46273082-46273101 | None:intergenic | 40.0% | |
| GCTCAACTATTTCACGTACA+AGG | + | chr3.1:46272683-46272702 | MS.gene84544:CDS | 40.0% | |
| GGAAAACCCTTAAGACGAAA+GGG | - | chr3.1:46272897-46272916 | None:intergenic | 40.0% | |
| GTGGGAGCAATATCTGTTAT+TGG | + | chr3.1:46271604-46271623 | MS.gene84544:CDS | 40.0% | |
| GTTACCATTGTTAGTGAGCT+TGG | + | chr3.1:46271874-46271893 | MS.gene84544:CDS | 40.0% | |
| GTTGAACAAAAAGAGGGGAA+TGG | + | chr3.1:46273779-46273798 | MS.gene84544:intron | 40.0% | |
| TAGCTTACTTGGTTGAGCTA+AGG | + | chr3.1:46273803-46273822 | MS.gene84544:intron | 40.0% | |
| TCCTAATCCCTTTCGTCTTA+AGG | + | chr3.1:46272887-46272906 | MS.gene84544:intron | 40.0% | |
| TGAACCCACCTAAATATACG+TGG | + | chr3.1:46272739-46272758 | MS.gene84544:CDS | 40.0% | |
| TGCATCTGATTAACTCGAGT+CGG | + | chr3.1:46274460-46274479 | MS.gene84544:intron | 40.0% | |
| TGCTAAATGGGTCAAGGTAA+TGG | + | chr3.1:46274697-46274716 | MS.gene84544:intron | 40.0% | |
| TGGAAAACCCTTAAGACGAA+AGG | - | chr3.1:46272898-46272917 | None:intergenic | 40.0% | |
| ! | AAAAGGATTGCCGTTTGTCT+AGG | - | chr3.1:46273729-46273748 | None:intergenic | 40.0% |
| ! | CTGAAAGAGTGATGTTGACT+CGG | + | chr3.1:46274663-46274682 | MS.gene84544:CDS | 40.0% |
| ! | GTTCTTTTACTGATCCTGGA+AGG | + | chr3.1:46271794-46271813 | MS.gene84544:CDS | 40.0% |
| ! | TTTTATCCGATTGCTTGGGA+AGG | + | chr3.1:46274281-46274300 | MS.gene84544:CDS | 40.0% |
| !! | AAGAAGCATTTGGAAAAGCG+CGG | + | chr3.1:46271745-46271764 | MS.gene84544:CDS | 40.0% |
| !! | ATTGCCGTTTGTCTAGGTTT+TGG | - | chr3.1:46273723-46273742 | None:intergenic | 40.0% |
| !!! | GTTGTGGAGATGTTGTTTTG+TGG | + | chr3.1:46271707-46271726 | MS.gene84544:CDS | 40.0% |
| ACCACCAAGCTCACTAACAA+TGG | - | chr3.1:46271881-46271900 | None:intergenic | 45.0% | |
| ACCATTGTTAGTGAGCTTGG+TGG | + | chr3.1:46271877-46271896 | MS.gene84544:CDS | 45.0% | |
| AGTGCATCCACACACAAACA+TGG | - | chr3.1:46271658-46271677 | None:intergenic | 45.0% | |
| ATTTCACGTACAAGGCTGTG+AGG | + | chr3.1:46272691-46272710 | MS.gene84544:CDS | 45.0% | |
| CCCTTAAGACGAAAGGGATT+AGG | - | chr3.1:46272891-46272910 | None:intergenic | 45.0% | |
| GCAGTTGGGTCAAACAACAT+TGG | - | chr3.1:46273272-46273291 | None:intergenic | 45.0% | |
| GCTTACTTGGTTGAGCTAAG+GGG | + | chr3.1:46273805-46273824 | MS.gene84544:intron | 45.0% | |
| TCAGAATCGAGTCTTGCGAA+TGG | - | chr3.1:46274536-46274555 | None:intergenic | 45.0% | |
| TGCGATCGAGCGATATCAAA+TGG | - | chr3.1:46272992-46273011 | None:intergenic | 45.0% | |
| TTACTGATCCTGGAAGGGAA+TGG | + | chr3.1:46271800-46271819 | MS.gene84544:CDS | 45.0% | |
| TTGTCCGGCAAGTGTTTGAA+CGG | - | chr3.1:46273104-46273123 | None:intergenic | 45.0% | |
| ! | AGAGTACCTTCCCAAGCAAT+CGG | - | chr3.1:46274290-46274309 | None:intergenic | 45.0% |
| ! | GACGCATGGTAAGTGTGTTT+TGG | + | chr3.1:46272836-46272855 | MS.gene84544:intron | 45.0% |
| ! | TGAGCTTGGTGGTCAATATG+AGG | + | chr3.1:46271888-46271907 | MS.gene84544:CDS | 45.0% |
| !! | TCAATGATGGACTCACACAC+AGG | + | chr3.1:46271631-46271650 | MS.gene84544:CDS | 45.0% |
| !! | AAAAAAAAAAAAAAAAAACT+TGG | - | chr3.1:46274009-46274028 | None:intergenic | 5.0% |
| AGGGGAATGGGTAGCTTACT+TGG | + | chr3.1:46273792-46273811 | MS.gene84544:intron | 50.0% | |
| CACAGGTCCATGTTTGTGTG+TGG | + | chr3.1:46271648-46271667 | MS.gene84544:CDS | 50.0% | |
| GTCTCCGTTCAAACACTTGC+CGG | + | chr3.1:46273097-46273116 | MS.gene84544:intron | 50.0% | |
| TCTGAGCTGCTGTCATCTGA+GGG | - | chr3.1:46274901-46274920 | None:intergenic | 50.0% | |
| TTCTGAGCTGCTGTCATCTG+AGG | - | chr3.1:46274902-46274921 | None:intergenic | 50.0% | |
| TTGACTCTCCATTCCCTTCC+AGG | - | chr3.1:46271811-46271830 | None:intergenic | 50.0% | |
| ! | AAGCATTTGGAAAAGCGCGG+CGG | + | chr3.1:46271748-46271767 | MS.gene84544:CDS | 50.0% |
| ! | GTTGATGAGGGAACGACTCA+TGG | + | chr3.1:46274861-46274880 | MS.gene84544:CDS | 50.0% |
| ! | CATTTGGAAAAGCGCGGCGG+CGG | + | chr3.1:46271751-46271770 | MS.gene84544:CDS | 60.0% |
| CGCGGCGGCGGAAGAACTAT+GGG | + | chr3.1:46271763-46271782 | MS.gene84544:CDS | 65.0% | |
| GCGGCGGCGGAAGAACTATG+GGG | + | chr3.1:46271764-46271783 | MS.gene84544:CDS | 65.0% | |
| GCGCGGCGGCGGAAGAACTA+TGG | + | chr3.1:46271762-46271781 | MS.gene84544:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 46271601 | 46274933 | 46271601 | ID=MS.gene84544 |
| chr3.1 | mRNA | 46271601 | 46274933 | 46271601 | ID=MS.gene84544.t1;Parent=MS.gene84544 |
| chr3.1 | exon | 46271601 | 46271933 | 46271601 | ID=MS.gene84544.t1.exon1;Parent=MS.gene84544.t1 |
| chr3.1 | CDS | 46271601 | 46271933 | 46271601 | ID=cds.MS.gene84544.t1;Parent=MS.gene84544.t1 |
| chr3.1 | exon | 46272678 | 46272769 | 46272678 | ID=MS.gene84544.t1.exon2;Parent=MS.gene84544.t1 |
| chr3.1 | CDS | 46272678 | 46272769 | 46272678 | ID=cds.MS.gene84544.t1;Parent=MS.gene84544.t1 |
| chr3.1 | exon | 46274245 | 46274302 | 46274245 | ID=MS.gene84544.t1.exon3;Parent=MS.gene84544.t1 |
| chr3.1 | CDS | 46274245 | 46274302 | 46274245 | ID=cds.MS.gene84544.t1;Parent=MS.gene84544.t1 |
| chr3.1 | exon | 46274647 | 46274712 | 46274647 | ID=MS.gene84544.t1.exon4;Parent=MS.gene84544.t1 |
| chr3.1 | CDS | 46274647 | 46274712 | 46274647 | ID=cds.MS.gene84544.t1;Parent=MS.gene84544.t1 |
| chr3.1 | exon | 46274811 | 46274933 | 46274811 | ID=MS.gene84544.t1.exon5;Parent=MS.gene84544.t1 |
| chr3.1 | CDS | 46274811 | 46274933 | 46274811 | ID=cds.MS.gene84544.t1;Parent=MS.gene84544.t1 |
| Gene Sequence |
| Protein sequence |
