Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89653.t1 | XP_003629329.1 | 98.2 | 341 | 6 | 0 | 1 | 341 | 1 | 341 | 8.00E-155 | 556.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89653.t1 | G7LC55 | 98.2 | 341 | 6 | 0 | 1 | 341 | 1 | 341 | 5.8e-155 | 556.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049251 | MS.gene89653 | 0.819131 | 1.36E-52 | -1.69E-46 |
| MS.gene049298 | MS.gene89653 | 0.806391 | 8.42E-50 | -1.69E-46 |
| MS.gene049989 | MS.gene89653 | 0.843452 | 1.39E-58 | -1.69E-46 |
| MS.gene050297 | MS.gene89653 | 0.80522 | 1.48E-49 | -1.69E-46 |
| MS.gene050875 | MS.gene89653 | 0.821343 | 4.25E-53 | -1.69E-46 |
| MS.gene05124 | MS.gene89653 | 0.812526 | 4.06E-51 | -1.69E-46 |
| MS.gene051339 | MS.gene89653 | 0.853727 | 1.97E-61 | -1.69E-46 |
| MS.gene051742 | MS.gene89653 | 0.829824 | 4.15E-55 | -1.69E-46 |
| MS.gene051816 | MS.gene89653 | 0.807692 | 4.47E-50 | -1.69E-46 |
| MS.gene051896 | MS.gene89653 | 0.84518 | 4.77E-59 | -1.69E-46 |
| MS.gene051914 | MS.gene89653 | 0.88115 | 3.05E-70 | -1.69E-46 |
| MS.gene051955 | MS.gene89653 | 0.863147 | 3.06E-64 | -1.69E-46 |
| MS.gene052143 | MS.gene89653 | 0.829368 | 5.35E-55 | -1.69E-46 |
| MS.gene052169 | MS.gene89653 | 0.833588 | 4.89E-56 | -1.69E-46 |
| MS.gene052308 | MS.gene89653 | 0.909736 | 4.10E-82 | -1.69E-46 |
| MS.gene052367 | MS.gene89653 | 0.904339 | 1.36E-79 | -1.69E-46 |
| MS.gene053173 | MS.gene89653 | 0.896649 | 3.01E-76 | -1.69E-46 |
| MS.gene053348 | MS.gene89653 | 0.866261 | 3.24E-65 | -1.69E-46 |
| MS.gene053416 | MS.gene89653 | 0.857179 | 1.95E-62 | -1.69E-46 |
| MS.gene053417 | MS.gene89653 | 0.856878 | 2.39E-62 | -1.69E-46 |
| MS.gene05369 | MS.gene89653 | 0.818459 | 1.94E-52 | -1.69E-46 |
| MS.gene054459 | MS.gene89653 | 0.81011 | 1.36E-50 | -1.69E-46 |
| MS.gene054551 | MS.gene89653 | 0.905313 | 4.90E-80 | -1.69E-46 |
| MS.gene054552 | MS.gene89653 | 0.84075 | 7.20E-58 | -1.69E-46 |
| MS.gene054593 | MS.gene89653 | 0.904379 | 1.30E-79 | -1.69E-46 |
| MS.gene054633 | MS.gene89653 | 0.866828 | 2.14E-65 | -1.69E-46 |
| MS.gene054662 | MS.gene89653 | 0.868374 | 6.85E-66 | -1.69E-46 |
| MS.gene054885 | MS.gene89653 | 0.805343 | 1.40E-49 | -1.69E-46 |
| MS.gene054941 | MS.gene89653 | 0.830179 | 3.40E-55 | -1.69E-46 |
| MS.gene055308 | MS.gene89653 | 0.915629 | 4.69E-85 | -1.69E-46 |
| MS.gene055578 | MS.gene89653 | 0.920258 | 1.61E-87 | -1.69E-46 |
| MS.gene055579 | MS.gene89653 | 0.82969 | 4.47E-55 | -1.69E-46 |
| MS.gene055957 | MS.gene89653 | 0.86748 | 1.33E-65 | -1.69E-46 |
| MS.gene056041 | MS.gene89653 | 0.931642 | 2.79E-94 | -1.69E-46 |
| MS.gene056042 | MS.gene89653 | 0.80604 | 9.98E-50 | -1.69E-46 |
| MS.gene05640 | MS.gene89653 | 0.912536 | 1.74E-83 | -1.69E-46 |
| MS.gene056526 | MS.gene89653 | 0.859172 | 4.97E-63 | -1.69E-46 |
| MS.gene056528 | MS.gene89653 | 0.862974 | 3.47E-64 | -1.69E-46 |
| MS.gene05652 | MS.gene89653 | 0.87963 | 1.07E-69 | -1.69E-46 |
| MS.gene05732 | MS.gene89653 | 0.845693 | 3.46E-59 | -1.69E-46 |
| MS.gene057367 | MS.gene89653 | 0.856545 | 2.99E-62 | -1.69E-46 |
| MS.gene057458 | MS.gene89653 | 0.870687 | 1.21E-66 | -1.69E-46 |
| MS.gene057669 | MS.gene89653 | 0.856767 | 2.58E-62 | -1.69E-46 |
| MS.gene058013 | MS.gene89653 | 0.829763 | 4.29E-55 | -1.69E-46 |
| MS.gene058128 | MS.gene89653 | 0.907887 | 3.11E-81 | -1.69E-46 |
| MS.gene058818 | MS.gene89653 | 0.800544 | 1.37E-48 | -1.69E-46 |
| MS.gene058827 | MS.gene89653 | 0.821316 | 4.31E-53 | -1.69E-46 |
| MS.gene058849 | MS.gene89653 | 0.811675 | 6.22E-51 | -1.69E-46 |
| MS.gene058853 | MS.gene89653 | 0.902716 | 7.29E-79 | -1.69E-46 |
| MS.gene05926 | MS.gene89653 | 0.832568 | 8.78E-56 | -1.69E-46 |
| MS.gene059304 | MS.gene89653 | 0.818052 | 2.40E-52 | -1.69E-46 |
| MS.gene059553 | MS.gene89653 | 0.86938 | 3.23E-66 | -1.69E-46 |
| MS.gene059616 | MS.gene89653 | 0.883676 | 3.67E-71 | -1.69E-46 |
| MS.gene060473 | MS.gene89653 | 0.909975 | 3.14E-82 | -1.69E-46 |
| MS.gene060565 | MS.gene89653 | 0.887381 | 1.50E-72 | -1.69E-46 |
| MS.gene06093 | MS.gene89653 | 0.902295 | 1.12E-78 | -1.69E-46 |
| MS.gene060985 | MS.gene89653 | 0.830314 | 3.15E-55 | -1.69E-46 |
| MS.gene061099 | MS.gene89653 | 0.89834 | 5.84E-77 | -1.69E-46 |
| MS.gene061260 | MS.gene89653 | 0.893808 | 4.45E-75 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89653.t1 | MTR_8g075950 | 97.654 | 341 | 8 | 0 | 1 | 341 | 1 | 341 | 0.0 | 675 |
| MS.gene89653.t1 | MTR_5g022010 | 51.429 | 350 | 91 | 16 | 1 | 338 | 1 | 283 | 2.25e-76 | 236 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89653.t1 | AT5G66230 | 48.580 | 352 | 143 | 12 | 1 | 337 | 1 | 329 | 1.59e-80 | 248 |
| MS.gene89653.t1 | AT5G66230 | 48.011 | 352 | 145 | 12 | 1 | 337 | 217 | 545 | 1.53e-76 | 245 |
| MS.gene89653.t1 | AT3G51230 | 47.291 | 203 | 94 | 7 | 1 | 202 | 1 | 191 | 1.95e-44 | 151 |
Find 78 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGATTTGAGGGGTGTTTGC+AGG | 0.236776 | 8.3:+27888992 | None:intergenic |
| AAACGAATATGCTTTCCTTT+TGG | 0.268585 | 8.3:+27888337 | None:intergenic |
| GAGGGGTGTTTGCAGGAGTT+GGG | 0.290208 | 8.3:+27888999 | None:intergenic |
| TGAGGGGTGTTTGCAGGAGT+TGG | 0.326042 | 8.3:+27888998 | None:intergenic |
| TGTGAACATTGGGGATTTGA+GGG | 0.376309 | 8.3:+27888981 | None:intergenic |
| TTCTGGTGAGGCTTTGTTGA+GGG | 0.378681 | 8.3:-27889134 | MS.gene89653:CDS |
| AAGATGATGGTGATTCAATT+TGG | 0.378688 | 8.3:-27888678 | MS.gene89653:CDS |
| GTGAAGAAGACTCCAGGTTC+TGG | 0.383582 | 8.3:-27889151 | MS.gene89653:CDS |
| AATGTGGTTCCAAAGTTTGC+TGG | 0.401675 | 8.3:-27888472 | MS.gene89653:CDS |
| AAAGGGACAAGCACAGCAAC+AGG | 0.404060 | 8.3:-27889281 | MS.gene89653:CDS |
| GTATGTTTCCCAGCAAACTT+TGG | 0.422670 | 8.3:+27888463 | None:intergenic |
| GAGGAAGAGTTTGCTGATGG+AGG | 0.426194 | 8.3:-27888550 | MS.gene89653:CDS |
| TTCGAAATCAAGACAAAGAA+AGG | 0.427601 | 8.3:-27889299 | MS.gene89653:CDS |
| GCCAACGATGGGAGAATCAT+TGG | 0.432716 | 8.3:+27889234 | None:intergenic |
| AAGAATTACTCACTTGAAGA+TGG | 0.434934 | 8.3:+27889569 | None:intergenic |
| TTGTGAACATTGGGGATTTG+AGG | 0.435272 | 8.3:+27888980 | None:intergenic |
| TTCAGGGAAGATCGAAGATT+CGG | 0.443167 | 8.3:-27889332 | MS.gene89653:intron |
| AGGGGTGTTTGCAGGAGTTG+GGG | 0.457618 | 8.3:+27889000 | None:intergenic |
| GTGGCAGTGTTGTGAACATT+GGG | 0.470455 | 8.3:+27888971 | None:intergenic |
| AATGTTCACAACACTGCCAC+TGG | 0.475348 | 8.3:-27888968 | MS.gene89653:CDS |
| AACAAAGCCTCACCAGAACC+TGG | 0.476812 | 8.3:+27889139 | None:intergenic |
| AGCTGAGGTAGAAGAAGATG+TGG | 0.478814 | 8.3:-27888602 | MS.gene89653:CDS |
| GTCGAGTATTGCGAAGCAAA+GGG | 0.479477 | 8.3:-27889182 | MS.gene89653:CDS |
| TCAAGAACAACTCATTCCTC+AGG | 0.485642 | 8.3:-27888915 | MS.gene89653:intron |
| GAGTTAACAAATTGAAGAAA+AGG | 0.490460 | 8.3:+27889040 | None:intergenic |
| TTGCGAAGCAAAGGGGAAGC+CGG | 0.490483 | 8.3:-27889174 | MS.gene89653:CDS |
| AAGGGGTTGCCAACTCCAAA+AGG | 0.491437 | 8.3:-27888352 | MS.gene89653:CDS |
| TGTTCTTGAACAACAGAAGA+AGG | 0.497351 | 8.3:+27888929 | None:intergenic |
| TCTGGTGAGGCTTTGTTGAG+GGG | 0.501445 | 8.3:-27889133 | MS.gene89653:CDS |
| CTATGAGGGTGTTGAAGAAG+AGG | 0.502493 | 8.3:-27888569 | MS.gene89653:CDS |
| TGAAGATGAGATTGTGGAAG+AGG | 0.502605 | 8.3:-27888419 | MS.gene89653:CDS |
| AGCAACATTGGTGTGAATGA+AGG | 0.503626 | 8.3:-27888496 | MS.gene89653:CDS |
| GAAGAGGAAGAGTTTGCTGA+TGG | 0.505421 | 8.3:-27888553 | MS.gene89653:CDS |
| ACTCTTCTTGCGGTGGATGA+AGG | 0.505990 | 8.3:+27889641 | None:intergenic |
| CCCATCGTTGGCCTTGCGAA+TGG | 0.506140 | 8.3:-27889223 | MS.gene89653:CDS |
| TGCGAAGCAAAGGGGAAGCC+GGG | 0.508660 | 8.3:-27889173 | MS.gene89653:CDS |
| TGAGGTAGAAGAAGATGTGG+AGG | 0.514377 | 8.3:-27888599 | MS.gene89653:CDS |
| ATGTGGTTCCAAAGTTTGCT+GGG | 0.519914 | 8.3:-27888471 | MS.gene89653:CDS |
| GTTGGGGCAAGAAGTTGCAT+TGG | 0.524680 | 8.3:+27889016 | None:intergenic |
| GTGAACATTGGGGATTTGAG+GGG | 0.528548 | 8.3:+27888982 | None:intergenic |
| GTTCTGGTGAGGCTTTGTTG+AGG | 0.549031 | 8.3:-27889135 | MS.gene89653:CDS |
| GTTACAGAAGACTCTAAGAT+GGG | 0.553091 | 8.3:-27888709 | MS.gene89653:CDS |
| TCCAATGATTCTCCCATCGT+TGG | 0.556712 | 8.3:-27889235 | MS.gene89653:CDS |
| GGTTACAGAAGACTCTAAGA+TGG | 0.557417 | 8.3:-27888710 | MS.gene89653:CDS |
| AGCCGGGTGAAGAAGACTCC+AGG | 0.558034 | 8.3:-27889157 | MS.gene89653:CDS |
| TGTCGAGTATTGCGAAGCAA+AGG | 0.560390 | 8.3:-27889183 | MS.gene89653:CDS |
| ACCATTCGCAAGGCCAACGA+TGG | 0.562728 | 8.3:+27889222 | None:intergenic |
| TCTTGTGACTCTTCTTGCGG+TGG | 0.565083 | 8.3:+27889634 | None:intergenic |
| TGTGGAGGATGATTACTATG+AGG | 0.569339 | 8.3:-27888584 | MS.gene89653:CDS |
| AGAATTACTCACTTGAAGAT+GGG | 0.571889 | 8.3:+27889570 | None:intergenic |
| GTGGAGGATGATTACTATGA+GGG | 0.573268 | 8.3:-27888583 | MS.gene89653:CDS |
| TGATCTTGTGACTCTTCTTG+CGG | 0.576495 | 8.3:+27889631 | None:intergenic |
| AGATTTCTCTGACAAATCTG+AGG | 0.585613 | 8.3:-27888731 | MS.gene89653:CDS |
| TCGAAATCAAGACAAAGAAA+GGG | 0.587811 | 8.3:-27889298 | MS.gene89653:CDS |
| TGAGATTTCTAAACTGACAA+TGG | 0.589958 | 8.3:-27889071 | MS.gene89653:CDS |
| TGAATCACCATCATCTTCTG+TGG | 0.596610 | 8.3:+27888684 | None:intergenic |
| CTACTTGATGAACTGTGTGA+AGG | 0.600791 | 8.3:-27888523 | MS.gene89653:CDS |
| ATGGGGTCCACAGAAGATGA+TGG | 0.602409 | 8.3:-27888691 | MS.gene89653:CDS |
| AGTGGCAGTGTTGTGAACAT+TGG | 0.604135 | 8.3:+27888970 | None:intergenic |
| AGATGGGATGTTGTTGACGC+TGG | 0.605894 | 8.3:+27889586 | None:intergenic |
| TAGTGATGAAGATGAGATTG+TGG | 0.608219 | 8.3:-27888425 | MS.gene89653:CDS |
| CCATTCGCAAGGCCAACGAT+GGG | 0.609625 | 8.3:+27889223 | None:intergenic |
| AACCTGGAGTCTTCTTCACC+CGG | 0.612775 | 8.3:+27889155 | None:intergenic |
| GACAAGCACAGCAACAGGAT+CGG | 0.613342 | 8.3:-27889276 | MS.gene89653:CDS |
| TGTGAAGGTTTGAGCAACAT+TGG | 0.614396 | 8.3:-27888508 | MS.gene89653:CDS |
| GTTGACGCTGGAAGCAGTCA+AGG | 0.616386 | 8.3:+27889598 | None:intergenic |
| TCAGAGAAATCTAACAGCAG+TGG | 0.624435 | 8.3:+27888742 | None:intergenic |
| TGATGATGAGGAAATAGCTG+AGG | 0.625861 | 8.3:-27888617 | MS.gene89653:CDS |
| TCTCGATCTCACCATTCGCA+AGG | 0.625938 | 8.3:+27889212 | None:intergenic |
| TGATGATGAAGATGATGATG+AGG | 0.643690 | 8.3:-27888629 | MS.gene89653:CDS |
| GAAGACTCCAGGTTCTGGTG+AGG | 0.655414 | 8.3:-27889146 | MS.gene89653:CDS |
| TGGTGTGAATGAAGGAAATG+TGG | 0.662191 | 8.3:-27888488 | MS.gene89653:CDS |
| TGCTTCGCAATACTCGACAG+AGG | 0.689458 | 8.3:+27889187 | None:intergenic |
| TCGAGTATTGCGAAGCAAAG+GGG | 0.696553 | 8.3:-27889181 | MS.gene89653:CDS |
| TTACAGAAGACTCTAAGATG+GGG | 0.707522 | 8.3:-27888708 | MS.gene89653:CDS |
| TGAAAACTCAGTGAAACCAG+TGG | 0.711880 | 8.3:+27888952 | None:intergenic |
| TGGCAGTGTTGTGAACATTG+GGG | 0.729813 | 8.3:+27888972 | None:intergenic |
| GACGCTGGAAGCAGTCAAGG+TGG | 0.753849 | 8.3:+27889601 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATTCAATTTTTGAAAA+TGG | - | chr8.3:27888507-27888526 | MS.gene89653:CDS | 10.0% |
| !!! | AAAATTCAATTTTTGAAAAT+GGG | - | chr8.3:27888508-27888527 | MS.gene89653:CDS | 10.0% |
| !!! | AAAAATTAGATTTTTCGAAA+TGG | - | chr8.3:27888414-27888433 | MS.gene89653:CDS | 15.0% |
| !!! | AAAATTAGATTTTTCGAAAT+GGG | - | chr8.3:27888415-27888434 | MS.gene89653:CDS | 15.0% |
| !! | ATGTAACACATAAAATACAT+TGG | + | chr8.3:27889088-27889107 | None:intergenic | 20.0% |
| !!! | AAAGATTTGATTTTGGAAAA+TGG | - | chr8.3:27888568-27888587 | MS.gene89653:CDS | 20.0% |
| !!! | AAGATTTGATTTTGGAAAAT+GGG | - | chr8.3:27888569-27888588 | MS.gene89653:CDS | 20.0% |
| !!! | CTTTATCAAAGATTTGATTT+TGG | - | chr8.3:27888561-27888580 | MS.gene89653:CDS | 20.0% |
| !!! | TGTATTTGATTTTTGTTGTT+AGG | - | chr8.3:27889147-27889166 | MS.gene89653:CDS | 20.0% |
| ! | GAGTTAACAAATTGAAGAAA+AGG | + | chr8.3:27888919-27888938 | None:intergenic | 25.0% |
| !!! | TTGATCATTTTCAAGTTTGA+TGG | - | chr8.3:27888440-27888459 | MS.gene89653:CDS | 25.0% |
| AAGAATTACTCACTTGAAGA+TGG | + | chr8.3:27888390-27888409 | None:intergenic | 30.0% | |
| AGAATTACTCACTTGAAGAT+GGG | + | chr8.3:27888389-27888408 | None:intergenic | 30.0% | |
| TCGAAATCAAGACAAAGAAA+GGG | - | chr8.3:27888658-27888677 | MS.gene89653:CDS | 30.0% | |
| TGAGATTTCTAAACTGACAA+TGG | - | chr8.3:27888885-27888904 | MS.gene89653:intron | 30.0% | |
| TTCGAAATCAAGACAAAGAA+AGG | - | chr8.3:27888657-27888676 | MS.gene89653:CDS | 30.0% | |
| ! | AAACGAATATGCTTTCCTTT+TGG | + | chr8.3:27889622-27889641 | None:intergenic | 30.0% |
| ! | AAGATGATGGTGATTCAATT+TGG | - | chr8.3:27889278-27889297 | MS.gene89653:CDS | 30.0% |
| ! | CTCATGATTTTCTTGATTCA+GGG | - | chr8.3:27888608-27888627 | MS.gene89653:CDS | 30.0% |
| ! | TCTCATGATTTTCTTGATTC+AGG | - | chr8.3:27888607-27888626 | MS.gene89653:CDS | 30.0% |
| ! | TTCTTCAACCTTTTGCAAAA+GGG | + | chr8.3:27888860-27888879 | None:intergenic | 30.0% |
| !! | AAAGCATATTCGTTTTTCTG+AGG | - | chr8.3:27889627-27889646 | MS.gene89653:CDS | 30.0% |
| !! | TCTGAGATTTTGCATTTGAA+GGG | - | chr8.3:27889586-27889605 | MS.gene89653:CDS | 30.0% |
| AGATTTCTCTGACAAATCTG+AGG | - | chr8.3:27889225-27889244 | MS.gene89653:CDS | 35.0% | |
| TAGTGATGAAGATGAGATTG+TGG | - | chr8.3:27889531-27889550 | MS.gene89653:intron | 35.0% | |
| TGTTCTTGAACAACAGAAGA+AGG | + | chr8.3:27889030-27889049 | None:intergenic | 35.0% | |
| ! | CTGAGATTTTGCATTTGAAG+GGG | - | chr8.3:27889587-27889606 | MS.gene89653:CDS | 35.0% |
| ! | CTTCTTCAACCTTTTGCAAA+AGG | + | chr8.3:27888861-27888880 | None:intergenic | 35.0% |
| ! | TGATGATGAAGATGATGATG+AGG | - | chr8.3:27889327-27889346 | MS.gene89653:CDS | 35.0% |
| !! | GTTACAGAAGACTCTAAGAT+GGG | - | chr8.3:27889247-27889266 | MS.gene89653:CDS | 35.0% |
| !! | TTACAGAAGACTCTAAGATG+GGG | - | chr8.3:27889248-27889267 | MS.gene89653:CDS | 35.0% |
| !!! | ATATGCTTTCCTTTTGGAGT+TGG | + | chr8.3:27889616-27889635 | None:intergenic | 35.0% |
| !!! | CTCTGAGATTTTGCATTTGA+AGG | - | chr8.3:27889585-27889604 | MS.gene89653:CDS | 35.0% |
| AATGTGGTTCCAAAGTTTGC+TGG | - | chr8.3:27889484-27889503 | MS.gene89653:intron | 40.0% | |
| AGCAACATTGGTGTGAATGA+AGG | - | chr8.3:27889460-27889479 | MS.gene89653:intron | 40.0% | |
| CTACTTGATGAACTGTGTGA+AGG | - | chr8.3:27889433-27889452 | MS.gene89653:intron | 40.0% | |
| GTATGTTTCCCAGCAAACTT+TGG | + | chr8.3:27889496-27889515 | None:intergenic | 40.0% | |
| GTGGAGGATGATTACTATGA+GGG | - | chr8.3:27889373-27889392 | MS.gene89653:intron | 40.0% | |
| TCAAGAACAACTCATTCCTC+AGG | - | chr8.3:27889041-27889060 | MS.gene89653:CDS | 40.0% | |
| TCAGAGAAATCTAACAGCAG+TGG | + | chr8.3:27889217-27889236 | None:intergenic | 40.0% | |
| TGAAAACTCAGTGAAACCAG+TGG | + | chr8.3:27889007-27889026 | None:intergenic | 40.0% | |
| TGAAGATGAGATTGTGGAAG+AGG | - | chr8.3:27889537-27889556 | MS.gene89653:intron | 40.0% | |
| TGAATCACCATCATCTTCTG+TGG | + | chr8.3:27889275-27889294 | None:intergenic | 40.0% | |
| TGATCTTGTGACTCTTCTTG+CGG | + | chr8.3:27888328-27888347 | None:intergenic | 40.0% | |
| TGGTGTGAATGAAGGAAATG+TGG | - | chr8.3:27889468-27889487 | MS.gene89653:intron | 40.0% | |
| TGTGAACATTGGGGATTTGA+GGG | + | chr8.3:27888978-27888997 | None:intergenic | 40.0% | |
| TGTGAAGGTTTGAGCAACAT+TGG | - | chr8.3:27889448-27889467 | MS.gene89653:intron | 40.0% | |
| TGTGGAGGATGATTACTATG+AGG | - | chr8.3:27889372-27889391 | MS.gene89653:intron | 40.0% | |
| TTCAGGGAAGATCGAAGATT+CGG | - | chr8.3:27888624-27888643 | MS.gene89653:CDS | 40.0% | |
| TTGTGAACATTGGGGATTTG+AGG | + | chr8.3:27888979-27888998 | None:intergenic | 40.0% | |
| ! | AGTGAAGACCCTTTTGCAAA+AGG | - | chr8.3:27888849-27888868 | MS.gene89653:intron | 40.0% |
| ! | ATGTGGTTCCAAAGTTTGCT+GGG | - | chr8.3:27889485-27889504 | MS.gene89653:intron | 40.0% |
| ! | GGTTACAGAAGACTCTAAGA+TGG | - | chr8.3:27889246-27889265 | MS.gene89653:CDS | 40.0% |
| ! | TGATGATGAGGAAATAGCTG+AGG | - | chr8.3:27889339-27889358 | MS.gene89653:intron | 40.0% |
| !! | GCATATTCGTTTTTCTGAGG+AGG | - | chr8.3:27889630-27889649 | MS.gene89653:CDS | 40.0% |
| AATGTTCACAACACTGCCAC+TGG | - | chr8.3:27888988-27889007 | MS.gene89653:CDS | 45.0% | |
| AGAAGACTGTGACAAACCTG+AGG | + | chr8.3:27889060-27889079 | None:intergenic | 45.0% | |
| AGCTGAGGTAGAAGAAGATG+TGG | - | chr8.3:27889354-27889373 | MS.gene89653:intron | 45.0% | |
| AGTGGCAGTGTTGTGAACAT+TGG | + | chr8.3:27888989-27889008 | None:intergenic | 45.0% | |
| GTGAACATTGGGGATTTGAG+GGG | + | chr8.3:27888977-27888996 | None:intergenic | 45.0% | |
| GTGGCAGTGTTGTGAACATT+GGG | + | chr8.3:27888988-27889007 | None:intergenic | 45.0% | |
| TCCAATGATTCTCCCATCGT+TGG | - | chr8.3:27888721-27888740 | MS.gene89653:CDS | 45.0% | |
| TGAGGTAGAAGAAGATGTGG+AGG | - | chr8.3:27889357-27889376 | MS.gene89653:intron | 45.0% | |
| TGGCAGTGTTGTGAACATTG+GGG | + | chr8.3:27888987-27889006 | None:intergenic | 45.0% | |
| ! | GTCGAGTATTGCGAAGCAAA+GGG | - | chr8.3:27888774-27888793 | MS.gene89653:CDS | 45.0% |
| ! | TCGAGTATTGCGAAGCAAAG+GGG | - | chr8.3:27888775-27888794 | MS.gene89653:CDS | 45.0% |
| ! | TGTCGAGTATTGCGAAGCAA+AGG | - | chr8.3:27888773-27888792 | MS.gene89653:CDS | 45.0% |
| !! | CTATGAGGGTGTTGAAGAAG+AGG | - | chr8.3:27889387-27889406 | MS.gene89653:intron | 45.0% |
| !! | GAAGAGGAAGAGTTTGCTGA+TGG | - | chr8.3:27889403-27889422 | MS.gene89653:intron | 45.0% |
| !! | TTCTGGTGAGGCTTTGTTGA+GGG | - | chr8.3:27888822-27888841 | MS.gene89653:intron | 45.0% |
| AAAGGGACAAGCACAGCAAC+AGG | - | chr8.3:27888675-27888694 | MS.gene89653:CDS | 50.0% | |
| AACAAAGCCTCACCAGAACC+TGG | + | chr8.3:27888820-27888839 | None:intergenic | 50.0% | |
| AACCTGGAGTCTTCTTCACC+CGG | + | chr8.3:27888804-27888823 | None:intergenic | 50.0% | |
| AAGGGGTTGCCAACTCCAAA+AGG | - | chr8.3:27889604-27889623 | MS.gene89653:CDS | 50.0% | |
| ACTCTTCTTGCGGTGGATGA+AGG | + | chr8.3:27888318-27888337 | None:intergenic | 50.0% | |
| AGATGGGATGTTGTTGACGC+TGG | + | chr8.3:27888373-27888392 | None:intergenic | 50.0% | |
| ATGGGGTCCACAGAAGATGA+TGG | - | chr8.3:27889265-27889284 | MS.gene89653:CDS | 50.0% | |
| GACAAGCACAGCAACAGGAT+CGG | - | chr8.3:27888680-27888699 | MS.gene89653:CDS | 50.0% | |
| GCCAACGATGGGAGAATCAT+TGG | + | chr8.3:27888725-27888744 | None:intergenic | 50.0% | |
| GTGAAGAAGACTCCAGGTTC+TGG | - | chr8.3:27888805-27888824 | MS.gene89653:intron | 50.0% | |
| GTTGGGGCAAGAAGTTGCAT+TGG | + | chr8.3:27888943-27888962 | None:intergenic | 50.0% | |
| TCTCGATCTCACCATTCGCA+AGG | + | chr8.3:27888747-27888766 | None:intergenic | 50.0% | |
| TCTTGTGACTCTTCTTGCGG+TGG | + | chr8.3:27888325-27888344 | None:intergenic | 50.0% | |
| TGCTTCGCAATACTCGACAG+AGG | + | chr8.3:27888772-27888791 | None:intergenic | 50.0% | |
| !! | GAGGAAGAGTTTGCTGATGG+AGG | - | chr8.3:27889406-27889425 | MS.gene89653:intron | 50.0% |
| !! | GTTCTGGTGAGGCTTTGTTG+AGG | - | chr8.3:27888821-27888840 | MS.gene89653:intron | 50.0% |
| !! | TCTGGTGAGGCTTTGTTGAG+GGG | - | chr8.3:27888823-27888842 | MS.gene89653:intron | 50.0% |
| ACCATTCGCAAGGCCAACGA+TGG | + | chr8.3:27888737-27888756 | None:intergenic | 55.0% | |
| CCATTCGCAAGGCCAACGAT+GGG | + | chr8.3:27888736-27888755 | None:intergenic | 55.0% | |
| GTTGACGCTGGAAGCAGTCA+AGG | + | chr8.3:27888361-27888380 | None:intergenic | 55.0% | |
| TTGCGAAGCAAAGGGGAAGC+CGG | - | chr8.3:27888782-27888801 | MS.gene89653:CDS | 55.0% | |
| ! | GAAGACTCCAGGTTCTGGTG+AGG | - | chr8.3:27888810-27888829 | MS.gene89653:intron | 55.0% |
| !! | AGGGGTGTTTGCAGGAGTTG+GGG | + | chr8.3:27888959-27888978 | None:intergenic | 55.0% |
| !! | GAGGGGTGTTTGCAGGAGTT+GGG | + | chr8.3:27888960-27888979 | None:intergenic | 55.0% |
| !! | GGGATTTGAGGGGTGTTTGC+AGG | + | chr8.3:27888967-27888986 | None:intergenic | 55.0% |
| !! | TGAGGGGTGTTTGCAGGAGT+TGG | + | chr8.3:27888961-27888980 | None:intergenic | 55.0% |
| AGCCGGGTGAAGAAGACTCC+AGG | - | chr8.3:27888799-27888818 | MS.gene89653:intron | 60.0% | |
| GACGCTGGAAGCAGTCAAGG+TGG | + | chr8.3:27888358-27888377 | None:intergenic | 60.0% | |
| TGCGAAGCAAAGGGGAAGCC+GGG | - | chr8.3:27888783-27888802 | MS.gene89653:CDS | 60.0% | |
| !! | CCCATCGTTGGCCTTGCGAA+TGG | - | chr8.3:27888733-27888752 | MS.gene89653:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 27888306 | 27889672 | 27888306 | ID=MS.gene89653 |
| chr8.3 | mRNA | 27888306 | 27889672 | 27888306 | ID=MS.gene89653.t1;Parent=MS.gene89653 |
| chr8.3 | exon | 27889582 | 27889672 | 27889582 | ID=MS.gene89653.t1.exon1;Parent=MS.gene89653.t1 |
| chr8.3 | CDS | 27889582 | 27889672 | 27889582 | ID=cds.MS.gene89653.t1;Parent=MS.gene89653.t1 |
| chr8.3 | exon | 27888916 | 27889349 | 27888916 | ID=MS.gene89653.t1.exon2;Parent=MS.gene89653.t1 |
| chr8.3 | CDS | 27888916 | 27889349 | 27888916 | ID=cds.MS.gene89653.t1;Parent=MS.gene89653.t1 |
| chr8.3 | exon | 27888306 | 27888809 | 27888306 | ID=MS.gene89653.t1.exon3;Parent=MS.gene89653.t1 |
| chr8.3 | CDS | 27888306 | 27888809 | 27888306 | ID=cds.MS.gene89653.t1;Parent=MS.gene89653.t1 |
| Gene Sequence |
| Protein sequence |
