Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90646.t1 | XP_013464926.1 | 98.9 | 174 | 2 | 0 | 1 | 174 | 1 | 174 | 2.40E-83 | 318.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90646.t1 | I3SET6 | 98.9 | 174 | 2 | 0 | 1 | 174 | 1 | 174 | 1.8e-83 | 318.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene90646 | 0.825534 | 4.45E-54 | -1.69E-46 |
| MS.gene049350 | MS.gene90646 | 0.848671 | 5.28E-60 | -1.69E-46 |
| MS.gene049711 | MS.gene90646 | 0.851363 | 9.32E-61 | -1.69E-46 |
| MS.gene049807 | MS.gene90646 | 0.811823 | 5.77E-51 | -1.69E-46 |
| MS.gene049821 | MS.gene90646 | 0.819789 | 9.66E-53 | -1.69E-46 |
| MS.gene049825 | MS.gene90646 | 0.800783 | 1.23E-48 | -1.69E-46 |
| MS.gene049850 | MS.gene90646 | 0.814085 | 1.84E-51 | -1.69E-46 |
| MS.gene049887 | MS.gene90646 | 0.808184 | 3.51E-50 | -1.69E-46 |
| MS.gene050551 | MS.gene90646 | 0.802897 | 4.51E-49 | -1.69E-46 |
| MS.gene050689 | MS.gene90646 | 0.800234 | 1.59E-48 | -1.69E-46 |
| MS.gene050807 | MS.gene90646 | 0.835027 | 2.13E-56 | -1.69E-46 |
| MS.gene050838 | MS.gene90646 | 0.805144 | 1.54E-49 | -1.69E-46 |
| MS.gene050901 | MS.gene90646 | 0.831684 | 1.45E-55 | -1.69E-46 |
| MS.gene051279 | MS.gene90646 | 0.800103 | 1.69E-48 | -1.69E-46 |
| MS.gene051328 | MS.gene90646 | 0.818066 | 2.38E-52 | -1.69E-46 |
| MS.gene05157 | MS.gene90646 | 0.800411 | 1.46E-48 | -1.69E-46 |
| MS.gene051700 | MS.gene90646 | 0.818975 | 1.48E-52 | -1.69E-46 |
| MS.gene051719 | MS.gene90646 | 0.884479 | 1.85E-71 | -1.69E-46 |
| MS.gene051720 | MS.gene90646 | 0.896261 | 4.37E-76 | -1.69E-46 |
| MS.gene052000 | MS.gene90646 | 0.808566 | 2.91E-50 | -1.69E-46 |
| MS.gene052133 | MS.gene90646 | 0.819119 | 1.37E-52 | -1.69E-46 |
| MS.gene052463 | MS.gene90646 | 0.821196 | 4.59E-53 | -1.69E-46 |
| MS.gene052516 | MS.gene90646 | 0.834505 | 2.88E-56 | -1.69E-46 |
| MS.gene052519 | MS.gene90646 | 0.801506 | 8.72E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene90646 | 0.800845 | 1.19E-48 | -1.69E-46 |
| MS.gene052673 | MS.gene90646 | -0.811283 | 7.56E-51 | -1.69E-46 |
| MS.gene052732 | MS.gene90646 | 0.818367 | 2.03E-52 | -1.69E-46 |
| MS.gene052863 | MS.gene90646 | 0.803443 | 3.48E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene90646 | 0.805416 | 1.35E-49 | -1.69E-46 |
| MS.gene053122 | MS.gene90646 | 0.813502 | 2.48E-51 | -1.69E-46 |
| MS.gene053144 | MS.gene90646 | 0.856422 | 3.25E-62 | -1.69E-46 |
| MS.gene053164 | MS.gene90646 | 0.804767 | 1.84E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene90646 | 0.822303 | 2.55E-53 | -1.69E-46 |
| MS.gene053536 | MS.gene90646 | 0.804551 | 2.05E-49 | -1.69E-46 |
| MS.gene053538 | MS.gene90646 | 0.802361 | 5.82E-49 | -1.69E-46 |
| MS.gene053581 | MS.gene90646 | 0.851029 | 1.16E-60 | -1.69E-46 |
| MS.gene05364 | MS.gene90646 | 0.824154 | 9.41E-54 | -1.69E-46 |
| MS.gene054584 | MS.gene90646 | 0.849843 | 2.49E-60 | -1.69E-46 |
| MS.gene05458 | MS.gene90646 | 0.858738 | 6.70E-63 | -1.69E-46 |
| MS.gene054651 | MS.gene90646 | 0.820386 | 7.05E-53 | -1.69E-46 |
| MS.gene054775 | MS.gene90646 | 0.808944 | 2.42E-50 | -1.69E-46 |
| MS.gene055083 | MS.gene90646 | 0.811635 | 6.34E-51 | -1.69E-46 |
| MS.gene055144 | MS.gene90646 | 0.861001 | 1.39E-63 | -1.69E-46 |
| MS.gene055465 | MS.gene90646 | 0.867992 | 9.09E-66 | -1.69E-46 |
| MS.gene055466 | MS.gene90646 | 0.856786 | 2.54E-62 | -1.69E-46 |
| MS.gene055468 | MS.gene90646 | 0.877456 | 6.19E-69 | -1.69E-46 |
| MS.gene055469 | MS.gene90646 | 0.837054 | 6.52E-57 | -1.69E-46 |
| MS.gene055512 | MS.gene90646 | 0.80462 | 1.98E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene90646 | 0.815973 | 7.03E-52 | -1.69E-46 |
| MS.gene055537 | MS.gene90646 | 0.849072 | 4.09E-60 | -1.69E-46 |
| MS.gene055580 | MS.gene90646 | -0.875257 | 3.55E-68 | -1.69E-46 |
| MS.gene055891 | MS.gene90646 | 0.823695 | 1.21E-53 | -1.69E-46 |
| MS.gene056005 | MS.gene90646 | 0.805832 | 1.10E-49 | -1.69E-46 |
| MS.gene056043 | MS.gene90646 | -0.872333 | 3.45E-67 | -1.69E-46 |
| MS.gene056181 | MS.gene90646 | 0.802306 | 5.97E-49 | -1.69E-46 |
| MS.gene056308 | MS.gene90646 | 0.83604 | 1.18E-56 | -1.69E-46 |
| MS.gene057287 | MS.gene90646 | 0.806713 | 7.20E-50 | -1.69E-46 |
| MS.gene058087 | MS.gene90646 | 0.822526 | 2.26E-53 | -1.69E-46 |
| MS.gene058330 | MS.gene90646 | 0.804552 | 2.05E-49 | -1.69E-46 |
| MS.gene058339 | MS.gene90646 | 0.84818 | 7.22E-60 | -1.69E-46 |
| MS.gene058625 | MS.gene90646 | 0.821875 | 3.20E-53 | -1.69E-46 |
| MS.gene058852 | MS.gene90646 | 0.833621 | 4.80E-56 | -1.69E-46 |
| MS.gene058945 | MS.gene90646 | 0.805044 | 1.61E-49 | -1.69E-46 |
| MS.gene05894 | MS.gene90646 | 0.822636 | 2.13E-53 | -1.69E-46 |
| MS.gene059426 | MS.gene90646 | 0.812381 | 4.36E-51 | -1.69E-46 |
| MS.gene059625 | MS.gene90646 | 0.803658 | 3.14E-49 | -1.69E-46 |
| MS.gene060429 | MS.gene90646 | 0.815815 | 7.62E-52 | -1.69E-46 |
| MS.gene060519 | MS.gene90646 | 0.851081 | 1.12E-60 | -1.69E-46 |
| MS.gene060587 | MS.gene90646 | 0.832218 | 1.07E-55 | -1.69E-46 |
| MS.gene060603 | MS.gene90646 | 0.838461 | 2.84E-57 | -1.69E-46 |
| MS.gene061100 | MS.gene90646 | 0.840209 | 9.98E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90646.t1 | MTR_2g085025 | 98.851 | 174 | 2 | 0 | 1 | 174 | 1 | 174 | 1.74e-123 | 345 |
| MS.gene90646.t1 | MTR_7g104020 | 67.742 | 155 | 48 | 1 | 20 | 174 | 14 | 166 | 1.10e-61 | 188 |
| MS.gene90646.t1 | MTR_7g104020 | 66.456 | 158 | 48 | 2 | 20 | 174 | 14 | 169 | 1.27e-59 | 183 |
| MS.gene90646.t1 | MTR_1g492930 | 56.329 | 158 | 68 | 1 | 17 | 173 | 1 | 158 | 3.93e-51 | 161 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90646.t1 | AT2G27740 | 59.649 | 171 | 68 | 1 | 1 | 171 | 1 | 170 | 4.65e-68 | 205 |
| MS.gene90646.t1 | AT2G36410 | 67.647 | 136 | 44 | 0 | 38 | 173 | 57 | 192 | 2.01e-61 | 189 |
| MS.gene90646.t1 | AT3G52920 | 68.889 | 135 | 42 | 0 | 38 | 172 | 28 | 162 | 3.93e-61 | 187 |
| MS.gene90646.t1 | AT3G09980 | 70.139 | 144 | 43 | 0 | 31 | 174 | 35 | 178 | 9.03e-60 | 184 |
| MS.gene90646.t1 | AT2G36410 | 66.187 | 139 | 44 | 1 | 38 | 173 | 57 | 195 | 2.42e-59 | 183 |
| MS.gene90646.t1 | AT3G52920 | 67.391 | 138 | 42 | 1 | 38 | 172 | 28 | 165 | 6.10e-59 | 182 |
| MS.gene90646.t1 | AT5G03660 | 66.418 | 134 | 45 | 0 | 38 | 171 | 36 | 169 | 2.16e-49 | 157 |
| MS.gene90646.t1 | AT3G52900 | 51.974 | 152 | 73 | 0 | 23 | 174 | 13 | 164 | 1.47e-48 | 155 |
| MS.gene90646.t1 | AT2G36355 | 51.299 | 154 | 69 | 2 | 22 | 173 | 5 | 154 | 1.67e-44 | 144 |
| MS.gene90646.t1 | AT2G27740 | 53.659 | 123 | 56 | 1 | 1 | 123 | 1 | 122 | 1.12e-41 | 136 |
| MS.gene90646.t1 | AT5G03660 | 63.793 | 116 | 42 | 0 | 38 | 153 | 36 | 151 | 8.52e-40 | 132 |
| MS.gene90646.t1 | AT2G36410 | 66.279 | 86 | 29 | 0 | 38 | 123 | 57 | 142 | 3.19e-35 | 120 |
| MS.gene90646.t1 | AT5G03660 | 53.731 | 134 | 40 | 1 | 38 | 171 | 36 | 147 | 9.69e-32 | 112 |
| MS.gene90646.t1 | AT2G36355 | 62.651 | 83 | 31 | 0 | 91 | 173 | 1 | 83 | 1.15e-30 | 107 |
| MS.gene90646.t1 | AT2G36355 | 61.628 | 86 | 33 | 0 | 88 | 173 | 27 | 112 | 1.43e-30 | 107 |
| MS.gene90646.t1 | AT2G36355 | 44.144 | 111 | 55 | 3 | 22 | 130 | 5 | 110 | 3.07e-22 | 87.0 |
Find 29 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTCTAACCTCCACTAATT+TGG | 0.202427 | 2.3:-12845386 | None:intergenic |
| AGAAATTGAGAGAAGAAAAT+TGG | 0.229998 | 2.3:+12844042 | MS.gene90646:CDS |
| ATTGCAACATCCTTCCTCTT+TGG | 0.283049 | 2.3:-12844696 | None:intergenic |
| TTTCATCTCTTCTTGGACTC+TGG | 0.297684 | 2.3:-12843967 | None:intergenic |
| GGGTCAAACCTGCCAGAAAA+AGG | 0.317850 | 2.3:+12844764 | MS.gene90646:CDS |
| GTGCAACATGTGAAGAATTC+AGG | 0.351410 | 2.3:+12843929 | MS.gene90646:CDS |
| TCTAGCAATGTTTAGAGAAA+AGG | 0.359449 | 2.3:+12844015 | MS.gene90646:CDS |
| TTCTGGCAGGTTTGACCCAA+TGG | 0.366095 | 2.3:-12844759 | None:intergenic |
| AAAATTGGAGGTTAGAGATA+AGG | 0.419428 | 2.3:+12844057 | MS.gene90646:CDS |
| GAGTCCAAGAAGAGATGAAA+AGG | 0.433573 | 2.3:+12843970 | MS.gene90646:CDS |
| AACAAAGAGTTGAAGCCATT+GGG | 0.443322 | 2.3:+12844744 | MS.gene90646:CDS |
| AGAAATTGCATAGGAGATTG+AGG | 0.462032 | 2.3:+12844662 | MS.gene90646:intron |
| GAGGATAAGGATGAAGAAGC+TGG | 0.468797 | 2.3:+12845536 | MS.gene90646:CDS |
| CGAAAAGGAAACAAAGAGAT+TGG | 0.472358 | 2.3:+12844102 | MS.gene90646:CDS |
| TCAACTTGTTACCAAATTAG+TGG | 0.474598 | 2.3:+12845375 | MS.gene90646:CDS |
| GAAATTGCATAGGAGATTGA+GGG | 0.490039 | 2.3:+12844663 | MS.gene90646:intron |
| TAACAAAGAGTTGAAGCCAT+TGG | 0.493465 | 2.3:+12844743 | MS.gene90646:CDS |
| GATAAGGTTCATGCTCATCT+TGG | 0.506717 | 2.3:+12844073 | MS.gene90646:CDS |
| TCATCTTGGTCGAGTCGAAA+AGG | 0.517837 | 2.3:+12844087 | MS.gene90646:CDS |
| TGACTGAAAGTGAGAGGATA+AGG | 0.518680 | 2.3:+12845523 | MS.gene90646:CDS |
| AAGAAGAGATGAAAAGGAAG+AGG | 0.527146 | 2.3:+12843976 | MS.gene90646:CDS |
| AATTGAGAGAAGAAAATTGG+AGG | 0.531288 | 2.3:+12844045 | MS.gene90646:CDS |
| AGAATACAATGAAGCTCTTG+AGG | 0.569694 | 2.3:+12845324 | MS.gene90646:CDS |
| TTTCACAGATCCAAAGAGGA+AGG | 0.618763 | 2.3:+12844686 | MS.gene90646:CDS |
| AGGGTTTCACAGATCCAAAG+AGG | 0.622777 | 2.3:+12844682 | MS.gene90646:CDS |
| AGCTTGTGACTGAAAGTGAG+AGG | 0.623994 | 2.3:+12845517 | MS.gene90646:intron |
| ACTTGTTACCAAATTAGTGG+AGG | 0.627774 | 2.3:+12845378 | MS.gene90646:CDS |
| GATAAGGATGAAGAAGCTGG+AGG | 0.694341 | 2.3:+12845539 | MS.gene90646:CDS |
| AGTTAGAAAGAAGATAGACA+TGG | 0.715757 | 2.3:+12844719 | MS.gene90646:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTAAAAACAATGTA+CGG | - | chr2.3:12845219-12845238 | None:intergenic | 10.0% |
| !! | ATATGTTTATTTAGTTGTTT+AGG | + | chr2.3:12845005-12845024 | MS.gene90646:intron | 15.0% |
| !! | GAAATTAAAGCAAATAATTA+AGG | - | chr2.3:12844941-12844960 | None:intergenic | 15.0% |
| !! | TTATAATATCTTTACAACAT+AGG | + | chr2.3:12844834-12844853 | MS.gene90646:intron | 15.0% |
| !!! | AATTATTTGCTTTAATTTCT+TGG | + | chr2.3:12844942-12844961 | MS.gene90646:intron | 15.0% |
| !!! | TTGTGAAACTATATATTTTT+GGG | + | chr2.3:12845289-12845308 | MS.gene90646:intron | 15.0% |
| !! | AAAAAAGAAATATGTTAGCT+AGG | - | chr2.3:12845462-12845481 | None:intergenic | 20.0% |
| !! | ATTAAAGCAAATAATTAAGG+TGG | - | chr2.3:12844938-12844957 | None:intergenic | 20.0% |
| !! | CAAACAAAGATTGTTTATAA+TGG | - | chr2.3:12844642-12844661 | None:intergenic | 20.0% |
| !! | TTTGATATTGTAGAAAATCA+CGG | + | chr2.3:12844340-12844359 | MS.gene90646:intron | 20.0% |
| !!! | CTTGTGAAACTATATATTTT+TGG | + | chr2.3:12845288-12845307 | MS.gene90646:intron | 20.0% |
| !!! | CTTTTGATGACATAATATAT+GGG | - | chr2.3:12844969-12844988 | None:intergenic | 20.0% |
| !!! | TGTGAAACTATATATTTTTG+GGG | + | chr2.3:12845290-12845309 | MS.gene90646:intron | 20.0% |
| ! | AAGTTTCAAAATAATGGTCA+CGG | + | chr2.3:12844293-12844312 | MS.gene90646:intron | 25.0% |
| ! | AGAAATTGAGAGAAGAAAAT+TGG | + | chr2.3:12844042-12844061 | MS.gene90646:CDS | 25.0% |
| ! | ATATCAAAAGCAAAACACAT+TGG | - | chr2.3:12844885-12844904 | None:intergenic | 25.0% |
| ! | ATGATGTTTCATTGTTTGTT+TGG | + | chr2.3:12844181-12844200 | MS.gene90646:intron | 25.0% |
| ! | CAAATTCAGTGTTTGTTTAT+TGG | - | chr2.3:12844148-12844167 | None:intergenic | 25.0% |
| ! | CAATGAGAAAAACAAAGAAA+AGG | + | chr2.3:12845351-12845370 | MS.gene90646:CDS | 25.0% |
| ! | CCATATATTATGTCATCAAA+AGG | + | chr2.3:12844967-12844986 | MS.gene90646:intron | 25.0% |
| ! | TATATTATGTCATCAAAAGG+AGG | + | chr2.3:12844970-12844989 | MS.gene90646:intron | 25.0% |
| ! | TATCAAAAGCAAAACACATT+GGG | - | chr2.3:12844884-12844903 | None:intergenic | 25.0% |
| ! | TGTGCAAAGTTTCAAAATAA+TGG | + | chr2.3:12844287-12844306 | MS.gene90646:intron | 25.0% |
| !!! | ATTGTTTGTTTGGTTTTTAC+TGG | + | chr2.3:12844191-12844210 | MS.gene90646:intron | 25.0% |
| !!! | CCTTTTGATGACATAATATA+TGG | - | chr2.3:12844970-12844989 | None:intergenic | 25.0% |
| !!! | TTCACTTGTTTGGTTTTTAT+TGG | + | chr2.3:12844244-12844263 | MS.gene90646:intron | 25.0% |
| AAAATTGGAGGTTAGAGATA+AGG | + | chr2.3:12844057-12844076 | MS.gene90646:CDS | 30.0% | |
| AACAGTTAGTACTAAACAGT+TGG | - | chr2.3:12844799-12844818 | None:intergenic | 30.0% | |
| AATTGAGAGAAGAAAATTGG+AGG | + | chr2.3:12844045-12844064 | MS.gene90646:CDS | 30.0% | |
| AATTTGAATTCCGTCTGTTT+CGG | - | chr2.3:12845142-12845161 | None:intergenic | 30.0% | |
| ACAATATAACGTTGAAATCG+TGG | + | chr2.3:12844413-12844432 | MS.gene90646:intron | 30.0% | |
| AGTTAGAAAGAAGATAGACA+TGG | + | chr2.3:12844719-12844738 | MS.gene90646:CDS | 30.0% | |
| TAAAGCTAATCCTTAAATCC+TGG | - | chr2.3:12844477-12844496 | None:intergenic | 30.0% | |
| TCTAGCAATGTTTAGAGAAA+AGG | + | chr2.3:12844015-12844034 | MS.gene90646:CDS | 30.0% | |
| TTAAAAACAATGTACGGAAG+AGG | - | chr2.3:12845213-12845232 | None:intergenic | 30.0% | |
| ! | CTTTGCATTATGTGAACTTT+TGG | + | chr2.3:12845491-12845510 | MS.gene90646:intron | 30.0% |
| ! | CTTTGTTTGAGAAATTGCAT+AGG | + | chr2.3:12844653-12844672 | MS.gene90646:intron | 30.0% |
| ! | TACAACATAGGATTTGTTCA+AGG | + | chr2.3:12844846-12844865 | MS.gene90646:intron | 30.0% |
| ! | TGCTGATCATATGATCTTTT+TGG | - | chr2.3:12843893-12843912 | None:intergenic | 30.0% |
| ! | TGGAAAATCTAACCTTTTTC+TGG | - | chr2.3:12844779-12844798 | None:intergenic | 30.0% |
| !! | TCAACTTGTTACCAAATTAG+TGG | + | chr2.3:12845375-12845394 | MS.gene90646:CDS | 30.0% |
| !! | TTTTAAAAAACGGTCTGCAA+CGG | - | chr2.3:12844448-12844467 | None:intergenic | 30.0% |
| !!! | CTATATATTTTTGGGGTTAC+AGG | + | chr2.3:12845297-12845316 | MS.gene90646:intron | 30.0% |
| !!! | CTGGTCAAGGTTTTAAAAAA+CGG | - | chr2.3:12844458-12844477 | None:intergenic | 30.0% |
| AAAACCTTGACCAGGATTTA+AGG | + | chr2.3:12844464-12844483 | MS.gene90646:intron | 35.0% | |
| AACAAAGAGTTGAAGCCATT+GGG | + | chr2.3:12844744-12844763 | MS.gene90646:CDS | 35.0% | |
| AAGAAGAGATGAAAAGGAAG+AGG | + | chr2.3:12843976-12843995 | MS.gene90646:CDS | 35.0% | |
| ACTTCTAACCTCCACTAATT+TGG | - | chr2.3:12845389-12845408 | None:intergenic | 35.0% | |
| AGAAATTGCATAGGAGATTG+AGG | + | chr2.3:12844662-12844681 | MS.gene90646:intron | 35.0% | |
| AGAATACAATGAAGCTCTTG+AGG | + | chr2.3:12845324-12845343 | MS.gene90646:CDS | 35.0% | |
| AGACTAAAGTCTAAGCAATG+TGG | - | chr2.3:12844910-12844929 | None:intergenic | 35.0% | |
| CAATATCAAAGATTACTGCG+TGG | - | chr2.3:12844330-12844349 | None:intergenic | 35.0% | |
| CGAAAAGGAAACAAAGAGAT+TGG | + | chr2.3:12844102-12844121 | MS.gene90646:CDS | 35.0% | |
| CGGAATTCAAATTTCTCAGT+TGG | + | chr2.3:12845149-12845168 | MS.gene90646:intron | 35.0% | |
| GAAATTGCATAGGAGATTGA+GGG | + | chr2.3:12844663-12844682 | MS.gene90646:intron | 35.0% | |
| TAACAAAGAGTTGAAGCCAT+TGG | + | chr2.3:12844743-12844762 | MS.gene90646:CDS | 35.0% | |
| TAATCCTTAAATCCTGGTCA+AGG | - | chr2.3:12844471-12844490 | None:intergenic | 35.0% | |
| TAGCGACCACAATTTGATAT+CGG | + | chr2.3:12844388-12844407 | MS.gene90646:intron | 35.0% | |
| TGTGCAAAGTTTCACTTGTT+TGG | + | chr2.3:12844234-12844253 | MS.gene90646:intron | 35.0% | |
| TTGTCACCGATATCAAATTG+TGG | - | chr2.3:12844397-12844416 | None:intergenic | 35.0% | |
| ! | ACTTGTTACCAAATTAGTGG+AGG | + | chr2.3:12845378-12845397 | MS.gene90646:CDS | 35.0% |
| ! | TCTTCCTTTTCATCTCTTCT+TGG | - | chr2.3:12843977-12843996 | None:intergenic | 35.0% |
| !! | AAATCTAACCTTTTTCTGGC+AGG | - | chr2.3:12844775-12844794 | None:intergenic | 35.0% |
| !! | CTAACTAGCTTGTTTCATAC+AGG | - | chr2.3:12844534-12844553 | None:intergenic | 35.0% |
| !!! | CGTTTTTTAAAACCTTGACC+AGG | + | chr2.3:12844456-12844475 | MS.gene90646:intron | 35.0% |
| ATTGCAACATCCTTCCTCTT+TGG | - | chr2.3:12844699-12844718 | None:intergenic | 40.0% | |
| GACTTTGTAACCGAAACAGA+CGG | + | chr2.3:12845129-12845148 | MS.gene90646:intron | 40.0% | |
| GAGTCCAAGAAGAGATGAAA+AGG | + | chr2.3:12843970-12843989 | MS.gene90646:CDS | 40.0% | |
| GATAAGGTTCATGCTCATCT+TGG | + | chr2.3:12844073-12844092 | MS.gene90646:CDS | 40.0% | |
| GTCAATCTCTTACCACCAAA+CGG | - | chr2.3:12845112-12845131 | None:intergenic | 40.0% | |
| GTGCAACATGTGAAGAATTC+AGG | + | chr2.3:12843929-12843948 | MS.gene90646:CDS | 40.0% | |
| TCAAATTGTGGTCGCTATTG+CGG | - | chr2.3:12844385-12844404 | None:intergenic | 40.0% | |
| TGACTGAAAGTGAGAGGATA+AGG | + | chr2.3:12845523-12845542 | MS.gene90646:CDS | 40.0% | |
| TTTCACAGATCCAAAGAGGA+AGG | + | chr2.3:12844686-12844705 | MS.gene90646:CDS | 40.0% | |
| TTTCATCTCTTCTTGGACTC+TGG | - | chr2.3:12843970-12843989 | None:intergenic | 40.0% | |
| AGCTTGTGACTGAAAGTGAG+AGG | + | chr2.3:12845517-12845536 | MS.gene90646:intron | 45.0% | |
| AGGGTTTCACAGATCCAAAG+AGG | + | chr2.3:12844682-12844701 | MS.gene90646:CDS | 45.0% | |
| ATCTCTTACCACCAAACGGA+AGG | - | chr2.3:12845108-12845127 | None:intergenic | 45.0% | |
| GAGGATAAGGATGAAGAAGC+TGG | + | chr2.3:12845536-12845555 | MS.gene90646:CDS | 45.0% | |
| GATAAGGATGAAGAAGCTGG+AGG | + | chr2.3:12845539-12845558 | MS.gene90646:CDS | 45.0% | |
| TCATCTTGGTCGAGTCGAAA+AGG | + | chr2.3:12844087-12844106 | MS.gene90646:CDS | 45.0% | |
| TGCTTCTTGTTCCTTCCGTT+TGG | + | chr2.3:12845094-12845113 | MS.gene90646:intron | 45.0% | |
| TTCTTGTTCCTTCCGTTTGG+TGG | + | chr2.3:12845097-12845116 | MS.gene90646:intron | 45.0% | |
| GGGTCAAACCTGCCAGAAAA+AGG | + | chr2.3:12844764-12844783 | MS.gene90646:CDS | 50.0% | |
| TTCTGGCAGGTTTGACCCAA+TGG | - | chr2.3:12844762-12844781 | None:intergenic | 50.0% | |
| ! | TAATGGTCACGGTCGCTTTG+CGG | + | chr2.3:12844304-12844323 | MS.gene90646:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 12843881 | 12845593 | 12843881 | ID=MS.gene90646 |
| chr2.3 | mRNA | 12843881 | 12845593 | 12843881 | ID=MS.gene90646.t1;Parent=MS.gene90646 |
| chr2.3 | exon | 12843881 | 12844138 | 12843881 | ID=MS.gene90646.t1.exon1;Parent=MS.gene90646.t1 |
| chr2.3 | CDS | 12843881 | 12844138 | 12843881 | ID=cds.MS.gene90646.t1;Parent=MS.gene90646.t1 |
| chr2.3 | exon | 12844675 | 12844785 | 12844675 | ID=MS.gene90646.t1.exon2;Parent=MS.gene90646.t1 |
| chr2.3 | CDS | 12844675 | 12844785 | 12844675 | ID=cds.MS.gene90646.t1;Parent=MS.gene90646.t1 |
| chr2.3 | exon | 12845319 | 12845399 | 12845319 | ID=MS.gene90646.t1.exon3;Parent=MS.gene90646.t1 |
| chr2.3 | CDS | 12845319 | 12845399 | 12845319 | ID=cds.MS.gene90646.t1;Parent=MS.gene90646.t1 |
| chr2.3 | exon | 12845519 | 12845593 | 12845519 | ID=MS.gene90646.t1.exon4;Parent=MS.gene90646.t1 |
| chr2.3 | CDS | 12845519 | 12845593 | 12845519 | ID=cds.MS.gene90646.t1;Parent=MS.gene90646.t1 |
| Gene Sequence |
| Protein sequence |
